Psyllid ID: psy6241

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNTS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHcccccEEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccHHHHEEEEcccccccccccccEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHcHHHHHHHHHHHcccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHEEcccccccccccccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccEEEEHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHcccc
Coil and Loop (DISEMBL)
mlkpmlkpkvLSQVLGQANTEGVQSTMLMSYEGTLLAysghkdndgtVIAAITSNIWSAFEKngrsafkedSLQMVLMECSVSFLSDILalegpqespllsnglfsKRLMSYEGTLLaysghkdndgtVIAAITSNIWSAFEKngrsafkedSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPlkqvvnts
Flexible Loop (DISEMBL)
MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYleaplkqvvnts
Low Complexity Region (SEG)
MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNTS
Disordered region (IsUnstruct)
**********************VQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPL*******
Disordered Region (DISOPRED)
*******PKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQE*****NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR**FKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLK******
Disordered Region (DISEMBL)
MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNTS
Disordered Region (DISPRO)
*LKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSFLSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
B5X7X4	125	Ragulator complex protein	N/A	N/A	0.507	0.856	0.626	1e-33
Q9JHS3	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.607	5e-33
Q6DEG4	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.607	7e-33
Q63ZJ2	125	Ragulator complex protein	N/A	N/A	0.507	0.856	0.598	1e-32
B5FYY5	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.607	1e-32
Q9Y2Q5	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.598	1e-32
Q3T132	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.598	1e-32
Q7ZXB7	125	Ragulator complex protein	N/A	N/A	0.507	0.856	0.598	1e-32
Q9V8I2	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.588	2e-31
Q6DF40	125	Ragulator complex protein	yes	N/A	0.507	0.856	0.588	2e-31

>sp|B5X7X4|LTOR2_SALSA Ragulator complex protein LAMTOR2 OS=Salmo salar GN=lamtor2 PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 84/107 (78%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           ++G+ S  L++ EG+LLAYSG+ D D  V AAI SNIWSA++KNG  AF ED L+ +LM+
Sbjct: 16  TSGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWSAYDKNGHQAFNEDKLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKAEAL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAEALVLYLEEPLTQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade.
Salmo salar (taxid: 8030)

>sp|Q9JHS3|LTOR2_MOUSE Ragulator complex protein LAMTOR2 OS=Mus musculus GN=Lamtor2 PE=1 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, recruits the Rag GTPases and the mTORC1 complex to lysosomes, a key step in activation of the TOR signaling cascade by amino acids. Adapter protein that enhances the efficiency of the MAP kinase cascade facilitating the activation of MAPK2.

Mus musculus (taxid: 10090)

>sp|Q6DEG4|LTOR2_DANRE Ragulator complex protein LAMTOR2 OS=Danio rerio GN=lamtor2 PE=2 SV=1

 Score =  140 bits (353), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 83/107 (77%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           ++G+ S  L++ EG+LL YSG+ D D  V AAI SNIW+A++KNG  AF ED L+ +LM+
Sbjct: 16  TSGVQSTLLLNNEGSLLTYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDKLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKAEAL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAEALVQYLEEPLTQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade.

Danio rerio (taxid: 7955)

>sp|Q63ZJ2|LTR2A_XENLA Ragulator complex protein LAMTOR2-A OS=Xenopus laevis GN=lamtor2-a PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A++KNG  AF ED+L+++LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDNLKLILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+V+N+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVSNLLLCMYAKETVGFGMLKAKAQALVYYLEEPLNQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade.

Xenopus laevis (taxid: 8355)

>sp|B5FYY5|LTOR2_TAEGU Ragulator complex protein LAMTOR2 OS=Taeniopygia guttata GN=LAMTOR2 PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 83/107 (77%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW A++KNG  AF ED+L+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWVAYDKNGHQAFNEDNLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade.

Taeniopygia guttata (taxid: 59729)

>sp|Q9Y2Q5|LTOR2_HUMAN Ragulator complex protein LAMTOR2 OS=Homo sapiens GN=LAMTOR2 PE=1 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF ED+L+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, recruits the Rag GTPases and the mTORC1 complex to lysosomes, a key step in activation of the TOR signaling cascade by amino acids. Adapter protein that enhances the efficiency of the MAP kinase cascade facilitating the activation of MAPK2.

Homo sapiens (taxid: 9606)

>sp|Q3T132|LTOR2_BOVIN Ragulator complex protein LAMTOR2 OS=Bos taurus GN=LAMTOR2 PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF ED+L+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, recruits the Rag GTPases and the mTORC1 complex to lysosomes, a key step in activation of the TOR signaling cascade by amino acids. Adapter protein that enhances the efficiency of the MAP kinase cascade facilitating the activation of MAPK2.

Bos taurus (taxid: 9913)

>sp|Q7ZXB7|LTR2B_XENLA Ragulator complex protein LAMTOR2-B OS=Xenopus laevis GN=lamtor2-b PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A++KNG  AF ED+L+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDNLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+V+N+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVSNLLLCMYAKETVGFGMLKAKAQALVHYLEEPLNQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex may, activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade.

Xenopus laevis (taxid: 8355)

>sp|Q9V8I2|LTOR2_DROME Ragulator complex protein LAMTOR2 homolog OS=Drosophila melanogaster GN=CG5189 PE=2 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 83/107 (77%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L+S EG LLAYSG+ D D  + AAI SNIW+A+EK+GR+AF+E  L  VL++
Sbjct: 16  TGGVENTLLLSQEGALLAYSGYGDKDARITAAIASNIWAAYEKHGRNAFREGRLTFVLID 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C NG VAITQVA+VLLCLYAK+ V  G+L+ KA +LA+YLE PLKQ+
Sbjct: 76  CENGHVAITQVASVLLCLYAKQTVGLGLLKQKAMSLASYLERPLKQI 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids.

Drosophila melanogaster (taxid: 7227)

>sp|Q6DF40|LTOR2_XENTR Ragulator complex protein LAMTOR2 OS=Xenopus tropicalis GN=lamtor2 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 83/107 (77%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A++KNG  AF ED+L+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDNLKFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+V+N+LLC+YAKE V FGML+AKA+AL  YLE  L QV
Sbjct: 76  CMEGRVAITRVSNLLLCMYAKETVGFGMLKAKAQALVYYLEESLNQV 122

Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
383848101	126	PREDICTED: ragulator complex protein LAM	0.516	0.865	0.651	1e-34
380029004	126	PREDICTED: ragulator complex protein LAM	0.516	0.865	0.642	2e-34
340720795	126	PREDICTED: ragulator complex protein LAM	0.516	0.865	0.651	3e-34
332020762	126	Mitogen-activated protein-binding protei	0.516	0.865	0.642	7e-34
91088435	125	PREDICTED: similar to mitogen-activated	0.507	0.856	0.654	7e-34
321477482	125	hypothetical protein DAPPUDRAFT_305432 [	0.507	0.856	0.644	9e-34
443713106	128	hypothetical protein CAPTEDRAFT_162993 [	0.521	0.859	0.636	2e-33
307176329	126	Mitogen-activated protein-binding protei	0.516	0.865	0.633	3e-33
156554912	126	PREDICTED: ragulator complex protein LAM	0.507	0.849	0.635	4e-33
357623870	129	roadblock domain-containing protein 3 [D	0.469	0.767	0.621	8e-33

>gi|383848101|ref|XP_003699690.1| PREDICTED: ragulator complex protein LAMTOR2 homolog [Megachile rotundata]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 89/109 (81%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ +G LLAYSG+ D D  V AAITSNIWSA+EKNGR+AFKED LQ VLM+
Sbjct: 16  TGGVENTLLLNRDGGLLAYSGYGDKDARVTAAITSNIWSAYEKNGRNAFKEDELQFVLMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVN 209
           C++GKV IT+VAN+LLCLYAKENV FG+LR KA+ALA YL+ PLK + N
Sbjct: 76  CADGKVVITEVANLLLCLYAKENVGFGLLREKAQALARYLDQPLKIIAN 124

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029004|ref|XP_003698173.1| PREDICTED: ragulator complex protein LAMTOR2-like [Apis florea]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 88/109 (80%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ +G LLAYSG+ D D  V AAITSNIWSA+EKNGR+AFKED LQ +LM+
Sbjct: 16  TGGVENTLLLNRDGGLLAYSGYGDKDARVTAAITSNIWSAYEKNGRNAFKEDELQFILMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVN 209
           C+ GKV IT+VAN+LLCLYAKENV FG+LR KA+ALA YL+ PLK + N
Sbjct: 76  CAEGKVVITEVANLLLCLYAKENVGFGLLREKAQALARYLDKPLKTIAN 124

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720795|ref|XP_003398815.1| PREDICTED: ragulator complex protein LAMTOR2-like [Bombus terrestris] gi|350398083|ref|XP_003485082.1| PREDICTED: ragulator complex protein LAMTOR2-like [Bombus impatiens]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 87/109 (79%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ +G LLAYSG+ D D  V AAITSNIWSA+EKNGR+AFKED LQ VLM+
Sbjct: 16  TGGVENTLLLNRDGGLLAYSGYGDKDARVTAAITSNIWSAYEKNGRNAFKEDELQFVLMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVN 209
           C  GKV IT+VAN+LLCLYAKENV FG+LR KA+ALA YL+ PLK + N
Sbjct: 76  CVEGKVVITEVANLLLCLYAKENVGFGLLREKAQALARYLDQPLKTIAN 124

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020762|gb|EGI61166.1| Mitogen-activated protein-binding protein-interacting protein [Acromyrmex echinatior]

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 87/109 (79%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ +G LLAYSG+ D D  V AAITSNIW+A+EKNGR+AFKED LQ VLM+
Sbjct: 16  TGGVENTLLLNRDGGLLAYSGYGDKDARVTAAITSNIWTAYEKNGRNAFKEDELQFVLMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVN 209
           C  GKV IT+VAN+LLCLYAKENV FG+LR KA+ALA YL+ PLK + N
Sbjct: 76  CMEGKVVITEVANLLLCLYAKENVGFGLLREKAQALAKYLDQPLKTIAN 124

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088435|ref|XP_967919.1| PREDICTED: similar to mitogen-activated protein-binding protein-interacting protein [Tribolium castaneum] gi|270011751|gb|EFA08199.1| hypothetical protein TcasGA2_TC005826 [Tribolium castaneum]

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 87/107 (81%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ EG LLAYSG+ D D  V AAI SNIWSA+EKNGR+AF+E+  QMVL+E
Sbjct: 16  TGGVENTLLLNQEGALLAYSGYGDRDARVTAAIASNIWSAYEKNGRNAFREEHPQMVLIE 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C++G++AITQVAN+LLCLYAK NV FGML+ KA ALA YLE PLKQV
Sbjct: 76  CTDGRIAITQVANLLLCLYAKNNVGFGMLKEKANALAIYLENPLKQV 122

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477482|gb|EFX88441.1| hypothetical protein DAPPUDRAFT_305432 [Daphnia pulex]

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 85/107 (79%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG LLAYSG+ D D  V AAI SNIWSA+ KNG+ AF ED L+ VL++
Sbjct: 16  TGGILSTLLLNTEGALLAYSGYGDKDARVTAAIASNIWSAYAKNGKVAFNEDVLECVLLD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C +GKV I QVAN+LLCLYAKENVCFGML AKA+ALA YL++PL+QV
Sbjct: 76  CMDGKVVIAQVANLLLCLYAKENVCFGMLHAKAKALADYLDSPLRQV 122

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443713106|gb|ELU06112.1| hypothetical protein CAPTEDRAFT_162993 [Capitella teleta]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 87/110 (79%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG LLA+SG+ D D  V AAI SNIWSAFEKNG++AF ED LQ+VLM+
Sbjct: 19  TGGVQSTLLLNNEGALLAFSGYGDKDARVTAAIASNIWSAFEKNGKAAFNEDELQLVLMD 78

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT 210
           C +GKVAIT+VAN+LLC+YAKENV  GMLRAKA+ALA YL  PL  V ++
Sbjct: 79  CEDGKVAITRVANLLLCIYAKENVGLGMLRAKAKALAEYLHEPLTHVASS 128

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307176329|gb|EFN65947.1| Mitogen-activated protein-binding protein-interacting protein [Camponotus floridanus]

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 86/109 (78%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ +G LLAYSG+ D D  V AAITSNIW+A+EKNGR+AFKED L  VLM+
Sbjct: 16  TGGVENTLLLNRDGGLLAYSGYGDKDARVTAAITSNIWTAYEKNGRNAFKEDELHYVLMD 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVN 209
           C  GKV IT+VAN+LLCLYAKENV FG+LR KA+ALA YL+ PLK + N
Sbjct: 76  CMEGKVVITEVANLLLCLYAKENVGFGLLREKAQALARYLDQPLKTIAN 124

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554912|ref|XP_001605487.1| PREDICTED: ragulator complex protein LAMTOR2 homolog [Nasonia vitripennis]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/107 (63%), Positives = 87/107 (81%)

Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ +  L++ +G LLAYSG+ D D  V AAITSNIWSA+EKNGR+AFKED L+ VLME
Sbjct: 16  TGGVENTLLLNRDGGLLAYSGYGDKDARVTAAITSNIWSAYEKNGRNAFKEDELKFVLME 75

Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C+ GKV IT+VAN+LLCLYA++NV FG+LR KA+ALA YL+ PLK +
Sbjct: 76  CAEGKVVITEVANLLLCLYARQNVGFGLLREKAQALAKYLDKPLKTI 122

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623870|gb|EHJ74855.1| roadblock domain-containing protein 3 [Danaus plexippus]

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 83/103 (80%)

Query: 108 RLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVA 167
           RL++++G LLAYSG+ D D  V AAI SN+WSA+EK+GR+ FKED L ++L++C NGK+A
Sbjct: 27  RLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEKHGRNVFKEDKLHLILVDCLNGKIA 86

Query: 168 ITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT 210
           ITQVAN+LLCLYAKE V FG+L+ K  A+A YLE PLKQV  +
Sbjct: 87  ITQVANLLLCLYAKETVGFGILKEKIHAIAQYLEGPLKQVATS 129

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
UNIPROTKB|B5X7X4	125	lamtor2 "Ragulator complex pro	0.507	0.856	0.626	1.6e-31
MGI|MGI:1932697	125	Lamtor2 "late endosomal/lysoso	0.507	0.856	0.607	6.9e-31
RGD|1562501	125	Lamtor2 "late endosomal/lysoso	0.507	0.856	0.607	6.9e-31
UNIPROTKB|Q63ZJ2	125	lamtor2-a "Ragulator complex p	0.507	0.856	0.598	8.8e-31
ZFIN|ZDB-GENE-040801-63	125	lamtor2 "late endosomal/lysoso	0.507	0.856	0.607	8.8e-31
UNIPROTKB|Q7ZXB7	125	lamtor2-b "Ragulator complex p	0.507	0.856	0.598	1.4e-30
UNIPROTKB|Q3T132	125	LAMTOR2 "Ragulator complex pro	0.507	0.856	0.598	1.4e-30
UNIPROTKB|Q9Y2Q5	125	LAMTOR2 "Ragulator complex pro	0.507	0.856	0.598	1.4e-30
UNIPROTKB|F2Z518	125	LAMTOR2 "Uncharacterized prote	0.507	0.856	0.598	1.4e-30
UNIPROTKB|B5FYY5	125	LAMTOR2 "Ragulator complex pro	0.507	0.856	0.607	1.4e-30

UNIPROTKB|B5X7X4 lamtor2 "Ragulator complex protein LAMTOR2" [Salmo salar (taxid:8030)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 67/107 (62%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             ++G+ S  L++ EG+LLAYSG+ D D  V AAI SNIWSA++KNG  AF ED L+ +LM+
Sbjct:    16 TSGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWSAYDKNGHQAFNEDKLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKAEAL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAEALVLYLEEPLTQV 122

GO:0005770 "late endosome" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0071986 "Ragulator complex" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0032947 "protein complex scaffold" evidence=ISS

MGI|MGI:1932697 Lamtor2 "late endosomal/lysosomal adaptor, MAPK and MTOR activator 2" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

GO:0000186 "activation of MAPKK activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016049 "cell growth" evidence=ISO

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0071230 "cellular response to amino acid stimulus" evidence=ISO

GO:0071986 "Ragulator complex" evidence=ISO

RGD|1562501 Lamtor2 "late endosomal/lysosomal adaptor, MAPK and MTOR activator 2" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

GO:0000186 "activation of MAPKK activity" evidence=IEA;ISO

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA;ISO

GO:0005770 "late endosome" evidence=ISO

GO:0016049 "cell growth" evidence=IEA;ISO

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA;ISO

GO:0032947 "protein complex scaffold" evidence=IEA;ISO

GO:0034613 "cellular protein localization" evidence=IEA;ISO

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA;ISO

GO:0071986 "Ragulator complex" evidence=IEA;ISO

UNIPROTKB|Q63ZJ2 lamtor2-a "Ragulator complex protein LAMTOR2-A" [Xenopus laevis (taxid:8355)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A++KNG  AF ED+L+++LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDNLKLILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+V+N+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVSNLLLCMYAKETVGFGMLKAKAQALVYYLEEPLNQV 122

GO:0005770 "late endosome" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0071986 "Ragulator complex" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0032947 "protein complex scaffold" evidence=ISS

ZFIN|ZDB-GENE-040801-63 lamtor2 "late endosomal/lysosomal adaptor, MAPK and MTOR activator 2" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 65/107 (60%), Positives = 83/107 (77%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             ++G+ S  L++ EG+LL YSG+ D D  V AAI SNIW+A++KNG  AF ED L+ +LM+
Sbjct:    16 TSGVQSTLLLNNEGSLLTYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDKLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKAEAL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAEALVQYLEEPLTQV 122

GO:0016049 "cell growth" evidence=ISS

GO:0032947 "protein complex scaffold" evidence=ISS

GO:0071986 "Ragulator complex" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|Q7ZXB7 lamtor2-b "Ragulator complex protein LAMTOR2-B" [Xenopus laevis (taxid:8355)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A++KNG  AF ED+L+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDNLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+V+N+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVSNLLLCMYAKETVGFGMLKAKAQALVHYLEEPLNQV 122

GO:0005770 "late endosome" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0071986 "Ragulator complex" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0032947 "protein complex scaffold" evidence=ISS

UNIPROTKB|Q3T132 LAMTOR2 "Ragulator complex protein LAMTOR2" [Bos taurus (taxid:9913)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF ED+L+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

GO:0032947 "protein complex scaffold" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0071986 "Ragulator complex" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0000186 "activation of MAPKK activity" evidence=IEA

UNIPROTKB|Q9Y2Q5 LAMTOR2 "Ragulator complex protein LAMTOR2" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF ED+L+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

GO:0000186 "activation of MAPKK activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IMP

GO:0005770 "late endosome" evidence=ISS

GO:0071986 "Ragulator complex" evidence=IDA

GO:0034613 "cellular protein localization" evidence=IMP

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0032947 "protein complex scaffold" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F2Z518 LAMTOR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF ED+L+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

GO:0071986 "Ragulator complex" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0000186 "activation of MAPKK activity" evidence=IEA

UNIPROTKB|B5FYY5 LAMTOR2 "Ragulator complex protein LAMTOR2" [Taeniopygia guttata (taxid:59729)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 65/107 (60%), Positives = 83/107 (77%)

Query:   101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
             + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW A++KNG  AF ED+L+ +LM+
Sbjct:    16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWVAYDKNGHQAFNEDNLKFILMD 75

Query:   161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
             C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct:    76 CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

GO:0005770 "late endosome" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0071986 "Ragulator complex" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0032947 "protein complex scaffold" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T132	LTOR2_BOVIN	No assigned EC number	0.5981	0.5071	0.856	yes	N/A
B5FYY5	LTOR2_TAEGU	No assigned EC number	0.6074	0.5071	0.856	yes	N/A
Q9V8I2	LTOR2_DROME	No assigned EC number	0.5887	0.5071	0.856	yes	N/A
Q6DEG4	LTOR2_DANRE	No assigned EC number	0.6074	0.5071	0.856	yes	N/A
Q6DF40	LTOR2_XENTR	No assigned EC number	0.5887	0.5071	0.856	yes	N/A
Q9JHS3	LTOR2_MOUSE	No assigned EC number	0.6074	0.5071	0.856	yes	N/A
Q9Y2Q5	LTOR2_HUMAN	No assigned EC number	0.5981	0.5071	0.856	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
smart00960	88	smart00960, Robl_LC7, Roadblock/LC7 domain	1e-07
smart00960	88	smart00960, Robl_LC7, Roadblock/LC7 domain	2e-06
pfam03259	91	pfam03259, Robl_LC7, Roadblock/LC7 domain	5e-06
pfam03259	91	pfam03259, Robl_LC7, Roadblock/LC7 domain	1e-05

>gnl|CDD|214939 smart00960, Robl_LC7, Roadblock/LC7 domain

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 109 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAI 168
           ++S +G LLA SG  D+D   +AA+ + + S  E+  R    E  L+ + +E   G+V I
Sbjct: 19  VVSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAAR-ELGEGELRQLRIEGEKGEVLI 77

Query: 169 TQVANVLLCL 178
           T   + LL +
Sbjct: 78  TPAGDALLAV 87

This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role. Length = 88

>gnl|CDD|214939 smart00960, Robl_LC7, Roadblock/LC7 domain

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 17 QANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMV 76
           A   GV+  +++S +G LLA SG  D+D   +AA+ + + S  E+  R    E  L+ +
Sbjct: 8  LARVPGVRGALVVSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAAR-ELGEGELRQL 66

Query: 77 LMEC 80
           +E 
Sbjct: 67 RIEG 70

This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role. Length = 88

>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 109 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAI 168
           ++S +G +LA +G  D+D   +AA+ S + SA +   R       L+ +L+E   G++ +
Sbjct: 20  VVSKDGLVLASTGLDDDDADRLAALASGLLSAAKALAR-DLGGGELRQLLIEGKKGELYL 78

Query: 169 TQVAN-VLLCLYA 180
           T      LL + A
Sbjct: 79  TPAGEGALLVVLA 91

This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role. Length = 91

>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 17 QANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMV 76
               GV+  +++S +G +LA +G  D+D   +AA+ S + SA +   R       L+ +
Sbjct: 9  LQRVPGVRGALVVSKDGLVLASTGLDDDDADRLAALASGLLSAAKALAR-DLGGGELRQL 67

Query: 77 LMEC 80
          L+E 
Sbjct: 68 LIEG 71

This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG4107|consensus	125		100.0
KOG4107|consensus	125		99.94
COG2018	119	Uncharacterized distant relative of homeotic prote	99.57
PF03259	91	Robl_LC7: Roadblock/LC7 domain; InterPro: IPR00494	99.17
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	97.59
PF03259	91	Robl_LC7: Roadblock/LC7 domain; InterPro: IPR00494	97.27
PF00235	121	Profilin: Profilin; InterPro: IPR002097 Profilin i	91.19
COG2018	119	Uncharacterized distant relative of homeotic prote	88.3
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	88.18
cd00148	127	PROF Profilin binds actin monomers, membrane polyp	81.51

>KOG4107|consensus

Probab=100.00  E-value=8.5e-42  Score=268.23  Aligned_cols=125  Identities=59%  Similarity=0.937  Sum_probs=102.9

Q ss_pred             CcchhhHHHHhhhhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhhhhh
Q psy6241           5 MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSVSF   84 (211)
Q Consensus         5 ~l~~~vL~q~~g~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~~~~   84 (211)
                      |+|||+|.|+++|.||+|+.+++|++.+|.||||+++.|.|+||+|||                                
T Consensus         1 MLkpKALtqVLsQaNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAi--------------------------------   48 (125)
T KOG4107|consen    1 MLKPKALTQVLSQANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAI--------------------------------   48 (125)
T ss_pred             CCChHHHHHHHhhcccCCccceEEEcCCCcEEEecccCcchhHHHHHH--------------------------------
Confidence            556667777777888889999999999999999999844445555555                                


Q ss_pred             hhhhhhhcCCCCCCccccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCC
Q psy6241          85 LSDILALEGPQESPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNG  164 (211)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~G  164 (211)
                                                                       +||||.+|+|+|..+|++|+|+++++|||+|
T Consensus        49 -------------------------------------------------asniWAAyer~gn~af~e~~Lkf~lldcenG   79 (125)
T KOG4107|consen   49 -------------------------------------------------ASNIWAAYERRGNQAFNEDDLKFTLLDCENG   79 (125)
T ss_pred             -------------------------------------------------HHHHHHHHHHhccccccccCceeeeeeecCC
Confidence                                                             5555555555555566778888889999999


Q ss_pred             eEEhhhhhhheeeeeeccCccccchHHHHHHHHHHhhhhhcccccC
Q psy6241         165 KVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT  210 (211)
Q Consensus       165 ri~i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~i~~~  210 (211)
                      +|+|++|++||||+||++++++||+|+|+++|+.|||+||.||+.+
T Consensus        80 ~vaiT~VA~~LLc~yAk~tvglGmlkaKa~tLa~YLE~Pl~qisas  125 (125)
T KOG4107|consen   80 VVAITLVARMLLCVYAKKTVGLGMLKAKAHTLAAYLEQPLLQISAS  125 (125)
T ss_pred             eeeHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhHHHHhcCC
Confidence            9999999999999999999999999999999999999999999874

>KOG4107|consensus

Probab=99.94  E-value=4.9e-28  Score=190.55  Aligned_cols=73  Identities=36%  Similarity=0.678  Sum_probs=67.1

Q ss_pred             CCCCCcchhhHHHHh--hhhcc-CCcceeeEeeecCceeeecCCCC-CCchhhhHhhhhhhhhhhhccccccccchhhhh
Q psy6241           1 MLKPMLKPKVLSQVL--GQANT-EGVQSTMLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMV   76 (211)
Q Consensus         1 ml~~~l~~~vL~q~~--g~~~t-~~~~~~~Ll~~~G~lla~~~~~~-~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~   76 (211)
                      |||||++++||+|+|  |+.+| ++|+||+|++|+|    |+++.. ..+-+.+-    ||.+|||+|+.+|+||+|+|+
T Consensus         1 MLkpKALtqVLsQaNTgGV~~tlLln~EG~LLAYsG----ygdkdarvtaAiasn----iWAAyer~gn~af~e~~Lkf~   72 (125)
T KOG4107|consen    1 MLKPKALTQVLSQANTGGVDGTLLLNKEGLLLAYSG----YGDKDARVTAAIASN----IWAAYERRGNQAFNEDDLKFT   72 (125)
T ss_pred             CCChHHHHHHHhhcccCCccceEEEcCCCcEEEecc----cCcchhHHHHHHHHH----HHHHHHHhccccccccCceee
Confidence            999999999999999  99999 8999999999999    999964 45555555    699999999999999999999


Q ss_pred             hhhhh
Q psy6241          77 LMECS   81 (211)
Q Consensus        77 l~~c~   81 (211)
                      +|+||
T Consensus        73 lldce   77 (125)
T KOG4107|consen   73 LLDCE   77 (125)
T ss_pred             eeeec
Confidence            99999

>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]

Probab=99.57  E-value=1.1e-14  Score=116.73  Aligned_cols=102  Identities=19%  Similarity=0.317  Sum_probs=96.0

Q ss_pred             ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hheeeee
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVLLCLY  179 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lLLcl~  179 (211)
                      .+||+++++++.||.+|+...|++.|++++||++|.+.++-+|.-. .|..++++|++|+.++|+|++.+++ ..+|.++
T Consensus        16 v~gv~ga~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~-~l~~g~leqi~I~g~~g~i~l~~~g~~~il~~~   94 (119)
T COG2018          16 VPGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAAD-ELGGGELEQIMIEGKKGKILLYDAGDDAILVVL   94 (119)
T ss_pred             ccCceEEEEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHH-HhCCCCceEEEEeccccEEEEEEcCCceEEEEE
Confidence            6899999999999999999999999999999999999999998664 4678999999999999999999999 7999999


Q ss_pred             eccCccccchHHHHHHHHHHhhhh
Q psy6241         180 AKENVCFGMLRAKAEALATYLEAP  203 (211)
Q Consensus       180 a~~~v~~GlLk~K~~aLa~yLe~p  203 (211)
                      +++++++|++|..++..++.+++-
T Consensus        95 a~~~~nLGli~~e~k~aa~~i~~~  118 (119)
T COG2018          95 ADEGTNLGLIRMEMKRAAEKIAAL  118 (119)
T ss_pred             cCCCCcchhhhhHHHHHHHHHhhc
Confidence            999999999999999999998763

>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []

Probab=99.17  E-value=3.3e-11  Score=87.60  Aligned_cols=79  Identities=30%  Similarity=0.451  Sum_probs=72.2

Q ss_pred             ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhh-heeeee
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVAN-VLLCLY  179 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~-lLLcl~  179 (211)
                      ..||.+++|++.||.+|++....+++++.+||+++.+|...++.+... ..++++++++++++|+++++++++ ++|+++
T Consensus        12 ~~gv~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l-~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~   90 (91)
T PF03259_consen   12 VPGVRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKEL-GEGELEQVRIETEKGEIIITPVGDFYLLVVL   90 (91)
T ss_dssp             STTEEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSEEEEEEEESSEEEEEEECSTCEEEEEE
T ss_pred             CCCeeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEECCCEEEEEEcCCCEEEEEE
Confidence            579999999999999999966678899999999999999999988764 489999999999999999999996 899887


Q ss_pred             e
Q psy6241         180 A  180 (211)
Q Consensus       180 a  180 (211)
                      +
T Consensus        91 ~   91 (91)
T PF03259_consen   91 A   91 (91)
T ss_dssp             E
T ss_pred             C
Confidence            4

Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.59  E-value=0.00037  Score=55.85  Aligned_cols=100  Identities=13%  Similarity=0.158  Sum_probs=76.9

Q ss_pred             cccCceeeEeeccccceeeecCCCC-CCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeee
Q psy6241         100 LSNGLFSKRLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCL  178 (211)
Q Consensus       100 ~~~gV~s~~L~~~eG~LlA~a~~~d-~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl  178 (211)
                      ..+||.++++-|.||..|+....++ .+.+.-+++.+. |....+++. .++-.+-|+++.-.++..++......+.+-+
T Consensus        13 ~v~Gl~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~t-f~~a~~Q~~-KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~   90 (119)
T PF08923_consen   13 RVDGLQAIVITDRDGVPIAKVSSDSAPESAMRPSLLST-FAMAIDQAS-KLGLGKNKSIIAYYDSYQVVQFNKLPLYITF   90 (119)
T ss_dssp             GSTTEEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCC-HHHHHHHHT-TSSS-SEEEEEEEESSEEEEEEEETTEEEEE
T ss_pred             ccCCeEEEEEECCCCcEEEEecCCCCcchhhhhHHHHH-HHHHhhccc-ccCCCCceEEEEEeCCEEEEEEeCCCeEEEE
Confidence            3679999999999999999987644 344455666555 555555442 4567888999999999999999999999999


Q ss_pred             eeccCccccchHHHHHHHHHHhh
Q psy6241         179 YAKENVCFGMLRAKAEALATYLE  201 (211)
Q Consensus       179 ~a~~~v~~GlLk~K~~aLa~yLe  201 (211)
                      +|.++++.|+++.=-+.|..+|+
T Consensus        91 ias~~aN~G~il~l~~~L~~~l~  113 (119)
T PF08923_consen   91 IASSNANTGLILSLEEELAPILN  113 (119)
T ss_dssp             EEETTS-HHHHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHhHHHHHHHHH
Confidence            99999999999988888887774

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []

Probab=97.27  E-value=0.00012  Score=52.96  Aligned_cols=64  Identities=28%  Similarity=0.416  Sum_probs=55.7

Q ss_pred             hhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241          17 QANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus        17 ~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      ..++.+++..++++.+|.++++.+.++.+++..||+++.+|.+.++.++... +++++++.++|+
T Consensus         9 l~~~~gv~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~-~~~~~~v~i~~~   72 (91)
T PF03259_consen    9 LQSVPGVRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELG-EGELEQVRIETE   72 (91)
T ss_dssp             HHHSTTEEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEEEES
T ss_pred             HhCCCCeeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEC
Confidence            3456899999999999999999666667999999999999999999998754 888888888887

Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....

>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin)

Probab=91.19  E-value=0.53  Score=36.34  Aligned_cols=93  Identities=17%  Similarity=0.250  Sum_probs=60.0

Q ss_pred             ceeeEeeccccceeeecCCC-CCCchhhHHHHHHHHHHHHhcCcc---ccccCcceeeEEEecC---------CeEEhhh
Q psy6241         104 LFSKRLMSYEGTLLAYSGHK-DNDGTVIAAITSNIWSAFEKNGRS---AFKEDSLQMVLMECSN---------GKVAITQ  170 (211)
Q Consensus       104 V~s~~L~~~eG~LlA~a~~~-d~da~vvAAIasnIW~ayer~g~~---a~~~d~Lq~llie~e~---------Gri~i~~  170 (211)
                      +..+.+++.||.+.|++... .-.+.=+..|+.    .++.....   .+.-+.-++.++-.++         +-++|..
T Consensus        16 ~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~----~f~~~~~~~~~gi~l~G~kY~~~~~d~~~i~~k~~~~G~~i~k   91 (121)
T PF00235_consen   16 ITKAAIIGSDGSVWASSPGFSNISPEEAKAIIK----AFNNPSKFPSNGITLGGKKYIVLRADDNSIYGKKGKGGIIIVK   91 (121)
T ss_dssp             ESEEEEEETTSSEEEEETTGGGCSHHHHHHHHH----HHHSSSHHHHH-EEETTEEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred             EeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHH----HhcCchhcccCCeEEcCcEeEEEecCCceEEeeCCCCcEEEEE
Confidence            89999999999999988764 444444444432    22322111   1233445555555554         3455555


Q ss_pred             hhhheeeeeeccCccccchHHHHHHHHHHh
Q psy6241         171 VANVLLCLYAKENVCFGMLRAKAEALATYL  200 (211)
Q Consensus       171 Va~lLLcl~a~~~v~~GlLk~K~~aLa~yL  200 (211)
                      -...++.-+.+++...|.....++.+++||
T Consensus        92 t~~~ivIg~y~~~~~~~~~~~~v~~lA~yL  121 (121)
T PF00235_consen   92 TKQAIVIGMYDESIQPGNCNKAVEKLADYL  121 (121)
T ss_dssp             CSSEEEEEEEETTSTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence            556666666666899999999999999998

It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....

>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]

Probab=88.30  E-value=0.74  Score=37.36  Aligned_cols=60  Identities=18%  Similarity=0.326  Sum_probs=50.6

Q ss_pred             CCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241          21 EGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus        21 ~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      .++++.++...+|-+++..-+.+.|++++||++|-+..+=+|.-+. |+.+++.+++++.+
T Consensus        17 ~gv~ga~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~~-l~~g~leqi~I~g~   76 (119)
T COG2018          17 PGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAADE-LGGGELEQIMIEGK   76 (119)
T ss_pred             cCceEEEEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHHH-hCCCCceEEEEecc
Confidence            7889999999999999998887779999999999999988887653 66677777777644

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.18  E-value=5.1  Score=31.79  Aligned_cols=97  Identities=11%  Similarity=0.085  Sum_probs=63.5

Q ss_pred             ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241         104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN  183 (211)
Q Consensus       104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~  183 (211)
                      |++++++|.+|..+.+--..+....-...+-..++........       -..-+++.++-+++-.+.+++-++++++++
T Consensus         2 I~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~   74 (141)
T PF01217_consen    2 IKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNS-------KQSPIFEHDNYRIVYKRYSDLYFVVVGDEN   74 (141)
T ss_dssp             EEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSS-------SSTSEEEETTEEEEEEEETTEEEEEEESST
T ss_pred             EEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhccc-------ccceeeecccceeeeEeeccEEEEEEeecc
Confidence            6899999999998887766444444434444444444443321       113367899999999999999999999988


Q ss_pred             ccccchHHHHHHHHHHhhhhhccc
Q psy6241         184 VCFGMLRAKAEALATYLEAPLKQV  207 (211)
Q Consensus       184 v~~GlLk~K~~aLa~yLe~pL~~i  207 (211)
                      .+.=++-.=++.+.+-|+.-+..+
T Consensus        75 eNel~~~e~l~~~v~~l~~~~~~v   98 (141)
T PF01217_consen   75 ENELLLLEFLHRLVEVLDDYFGNV   98 (141)
T ss_dssp             SBHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             cchHHHHHHHHHhhhhhhhhhccc
Confidence            775555555555555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline

Probab=81.51  E-value=9.2  Score=30.37  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             CceeeEeeccc-cceeeecCC-CCCCchhhHHHHHHHHHHHHhcCcc---ccccCcceeeEEEecC---------CeEEh
Q psy6241         103 GLFSKRLMSYE-GTLLAYSGH-KDNDGTVIAAITSNIWSAFEKNGRS---AFKEDSLQMVLMECSN---------GKVAI  168 (211)
Q Consensus       103 gV~s~~L~~~e-G~LlA~a~~-~d~da~vvAAIasnIW~ayer~g~~---a~~~d~Lq~llie~e~---------Gri~i  168 (211)
                      .|..+-+++.| |++-|++.. ....++=+.+|+.    +++.....   -+.-..-+++.+..++         +-+++
T Consensus        15 ~~~~aAI~g~d~g~vwA~s~~~f~~t~~E~~~i~~----~f~d~~~~~~~Gi~l~G~KY~~l~~d~~~i~~kk~~~Gi~i   90 (127)
T cd00148          15 KVDSAAIVGHDDGSVWAASAGGFNLTPEEVGTLVA----GFKDPDGVFSTGLTLGGQKYMVIRADDRSIYGKKGAGGVVI   90 (127)
T ss_pred             CcCEEEEEecCCCCeEEecCCCCccCHHHHHHHHH----HccCccccccCCEEECCeEEEEEecCccEEEeeeCCCeEEE
Confidence            57788888888 999998664 3444444444432    23322111   1223444555555443         23444


Q ss_pred             hhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         169 TQVANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       169 ~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      ..-...|+..+.++++..|-.......|++||.+
T Consensus        91 ~kT~~~ivi~~y~e~~~~g~~~~~v~~ladYL~~  124 (127)
T cd00148          91 VKTKQALVIGMYEEGVQPGQANKVVEKLADYLRS  124 (127)
T ss_pred             EECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4445666666666679999999999999999975

Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
1vet_B	125	Crystal Structure Of P14MP1 AT 1.9 A RESOLUTION Len		4e-34
2zl1_B	131	Mp1-P14 Scaffolding Complex Length = 131		4e-34
1szv_A	130	Structure Of The Adaptor Protein P14 Reveals A Prof		4e-34
1sko_B	130	Mp1-P14 Complex Length = 130		4e-34
3cpt_B	131	Mp1-P14 Scaffolding Complex Length = 131		2e-33
1veu_B	126	Crystal Structure Of The P14MP1 COMPLEX AT 2.15 A R		2e-32

>pdb|1VET|B Chain B, Crystal Structure Of P14MP1 AT 1.9 A RESOLUTION Length = 125

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct: 16  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 75
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 76  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 122

>pdb|2ZL1|B Chain B, Mp1-P14 Scaffolding Complex Length = 131

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct: 22  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 81
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 82  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128

>pdb|1SZV|A Chain A, Structure Of The Adaptor Protein P14 Reveals A Profilin- Like Fold With Novel Function Length = 130

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct: 21  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 80
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 81  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 127

>pdb|1SKO|B Chain B, Mp1-P14 Complex Length = 130

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+
Sbjct: 22  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMD 81
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 82  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128

>pdb|3CPT|B Chain B, Mp1-P14 Scaffolding Complex Length = 131

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 83/107 (77%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A ++NG  AF EDSL+ +LM+
Sbjct: 22  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAADRNGNQAFNEDSLKFILMD 81
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV
Sbjct: 82  CMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQV 128

>pdb|1VEU|B Chain B, Crystal Structure Of The P14MP1 COMPLEX AT 2.15 A Resolution Length = 126

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 81/107 (75%)
Query: 101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLME 160
           + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +L +
Sbjct: 17  TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILXD 76
Query: 161 CSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQV 207
           C  G+VAIT+VAN+LLC YAKE V FG L+AKA+AL  YLE PL QV
Sbjct: 77  CXEGRVAITRVANLLLCXYAKETVGFGXLKAKAQALVQYLEEPLTQV 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1vet_B	125	P14, late endosomal/lysosomal MP1 interacting prot	4e-36
1vet_B	125	P14, late endosomal/lysosomal MP1 interacting prot	3e-26

>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B Length = 125

 Score =  122 bits (307), Expect = 4e-36
 Identities = 66/114 (57%), Positives = 86/114 (75%)

Query: 97  SPLLSNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQM 156
           S   + G+ S  L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ 
Sbjct: 12  SQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKF 71

Query: 157 VLMECSNGKVAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEAPLKQVVNT 210
           +LM+C  G+VAIT+VAN+LLC+YAKE V FGML+AKA+AL  YLE PL QV  +
Sbjct: 72  ILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS 125

>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B Length = 125

 Score = 97.1 bits (241), Expect = 3e-26
 Identities = 48/77 (62%), Positives = 62/77 (80%)

Query: 5  MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNG 64
          ML+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG
Sbjct: 1  MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60

Query: 65 RSAFKEDSLQMVLMECS 81
            AF EDSL+ +LM+C 
Sbjct: 61 NQAFNEDSLKFILMDCM 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1vet_B	125	P14, late endosomal/lysosomal MP1 interacting prot	99.91
3leq_A	126	Uncharacterized protein CVNB5; PSI, MCSG, structur	99.56
3t12_B	136	Gliding protein MGLB; G-domain containing protein,	99.34
1j3w_A	163	Giding PROTEIN-MGLB; gliding, motility, mutational	99.28
3kye_A	150	Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha s	99.19
1vet_B	125	P14, late endosomal/lysosomal MP1 interacting prot	99.16
3leq_A	126	Uncharacterized protein CVNB5; PSI, MCSG, structur	97.47
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	95.97
1j3w_A	163	Giding PROTEIN-MGLB; gliding, motility, mutational	95.59
4ftx_A	170	Protein SLM4; EGO complex, EGO3, TOR signaling, pr	95.17
2hz5_A	106	Dynein light chain 2A, cytoplasmic; DNLC2A, transp	93.72
3l7h_A	97	RE64145P, roadblock; LC7, KM23, dynein, light chai	92.81
3lgo_A	172	Protein SLM4; roadblock/LC7, domain SWAP, autophag	92.53
3msh_A	99	Hepatitis B virus X-interacting protein; alpha-bet	90.83
3t12_B	136	Gliding protein MGLB; G-domain containing protein,	89.66
3nul_A	130	Profilin I; cytoskeleton, actin binding protein; H	89.24
3d9y_A	127	Profilin; yeast, actin-binding, cytoskeleton, prot	89.22
1acf_A	125	Profilin I; protein binding, actin-binding protein	83.86
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	83.72
1ypr_A	125	Profilin; actin-binding protein, cytoskeleton; 2.3	83.62
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	83.28
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	82.28

>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B

Probab=99.91  E-value=8.3e-25  Score=173.19  Aligned_cols=109  Identities=60%  Similarity=0.988  Sum_probs=96.5

Q ss_pred             cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeec
Q psy6241         102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAK  181 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~  181 (211)
                      .||++++|++.||.+|+++.++++|++.+||++|++|+.|++.+.+.|.++.++++|||+++|++.++++++.+||++++
T Consensus        17 ~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~   96 (125)
T 1vet_B           17 GGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAK   96 (125)
T ss_dssp             TTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             CCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeC
Confidence            48888888888888888888888999999999999999999999987888999999999999999999998899999999


Q ss_pred             cCccccchHHHHHHHHHHhhhhhcccccC
Q psy6241         182 ENVCFGMLRAKAEALATYLEAPLKQVVNT  210 (211)
Q Consensus       182 ~~v~~GlLk~K~~aLa~yLe~pL~~i~~~  210 (211)
                      +++++|+++.|++.+++||.+|||+|+.+
T Consensus        97 ~~a~lGlv~~~m~~lv~~L~~~lr~~~~~  125 (125)
T 1vet_B           97 ETVGFGMLKAKAQALVQYLEEPLTQVAAS  125 (125)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHCC-------
T ss_pred             CCCChHHHHHHHHHHHHHHhhhhhhhccC
Confidence            99999999999999999999999999863

>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}

Probab=99.56  E-value=3.9e-15  Score=117.37  Aligned_cols=105  Identities=16%  Similarity=0.220  Sum_probs=81.3

Q ss_pred             ccCceeeEeeccccceeeecCCCC-CCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hheeee
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVLLCL  178 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~~d-~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lLLcl  178 (211)
                      +.||.+++|++.||.+|+++.+.+ +|++.+||++|.+|+..++.+.+ |..+.+++++||+++|.+++++++ +.+||+
T Consensus        16 v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~-~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~v   94 (126)
T 3leq_A           16 VAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMD-FRRGPVRQALIEMGKGYLILTAAGPGAHLVV   94 (126)
T ss_dssp             CTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECSSCEEEEEESSTTEEEEE
T ss_pred             CCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEeCCCEEEEEEeCCCcEEEE
Confidence            569999999999999999987644 68999999999999999999876 678999999999999999999999 599999


Q ss_pred             eeccCccccchHHHHHHHHHHhhhhhcc
Q psy6241         179 YAKENVCFGMLRAKAEALATYLEAPLKQ  206 (211)
Q Consensus       179 ~a~~~v~~GlLk~K~~aLa~yLe~pL~~  206 (211)
                      ++++++++|+++.+++.+++.+.+-|..
T Consensus        95 la~~~a~lG~v~~em~~~v~ri~~~L~~  122 (126)
T 3leq_A           95 LTRQGADVGVVAYQMNMLVKKIGEHLSA  122 (126)
T ss_dssp             EECTTCCHHHHHHHHHHHHHHC------
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999988877654

>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*

Probab=99.34  E-value=1.8e-12  Score=104.26  Aligned_cols=106  Identities=18%  Similarity=0.167  Sum_probs=95.5

Q ss_pred             ccCceeeEeeccccceeeecC----CCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hhe
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSG----HKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVL  175 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~----~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lL  175 (211)
                      ..||++++|++.+|.+|++.+    +.+-|.+.+||++|....+.++-++. +.+++++++++|+++|.+.+.+|+ +++
T Consensus        23 ~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~-Lge~~~~~l~~eGe~~~i~i~~vg~~~i  101 (136)
T 3t12_B           23 ETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHAL  101 (136)
T ss_dssp             HHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHH-TTCSCCCCEEEECSSCEEEEEESSTTEE
T ss_pred             hcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HCCCchhHheEEcCcCCEEEEEcCCCEE
Confidence            368999999999999999986    45679999999999999999998876 467789999999999999999998 699


Q ss_pred             eeeeeccCccccchHHHHHHHHHHhhhhhccc
Q psy6241         176 LCLYAKENVCFGMLRAKAEALATYLEAPLKQV  207 (211)
Q Consensus       176 Lcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~i  207 (211)
                      |+++.++++++|++|.++++.++-|.+-|.+.
T Consensus       102 Lvvifd~~~~LG~Vrl~~kka~~~l~~il~~~  133 (136)
T 3t12_B          102 LVLVFDETAPLGKVKLHGKAAAAALAAIAEEA  133 (136)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCceEeeehHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877654

>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A

Probab=99.28  E-value=7.6e-12  Score=102.93  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             cCceeeEeeccccceeee-----cCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hhe
Q psy6241         102 NGLFSKRLMSYEGTLLAY-----SGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVL  175 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~-----a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lL  175 (211)
                      .||++++|++.||.+|++     ..+.+ |++.+||++|.+.+..++.+.. +....++++++|+++|.+.+++++ ..+
T Consensus        27 ~Gv~~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~-l~~G~~~q~~ve~~~g~l~v~~~g~~a~  104 (163)
T 1j3w_A           27 TGARYALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHAL  104 (163)
T ss_dssp             HCCSEEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECSSCEEEEEESSTTEE
T ss_pred             CCceEEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCcEEEEEEeCCCeE
Confidence            589999999999999999     77766 9999999999999999887754 567889999999999999999999 599


Q ss_pred             eeeeeccCccccchHHHHHHHHHHhhhhhccc
Q psy6241         176 LCLYAKENVCFGMLRAKAEALATYLEAPLKQV  207 (211)
Q Consensus       176 Lcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~i  207 (211)
                      |++++++++++|+++..++.+++.|.+-|+..
T Consensus       105 L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~~~  136 (163)
T 1j3w_A          105 LVLVFDETAPLGKVKLHGKRASEALARIAEEA  136 (163)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888887766653

>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}

Probab=99.19  E-value=3.1e-11  Score=98.87  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=92.4

Q ss_pred             ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccc-cCcceeeEEEecCCeEEhhhhh-hheeee
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFK-EDSLQMVLMECSNGKVAITQVA-NVLLCL  178 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~-~d~Lq~llie~e~Gri~i~~Va-~lLLcl  178 (211)
                      +.||..++|++.||.+.++...+.++++-+||++|.+.+.-++.+.+ |. ...++++|||+++|.+.+++++ ..+|++
T Consensus        38 vpGV~~AvvvS~DGLla~S~~l~~~dae~LAA~aSgl~SLa~~aa~~-~~~~G~vrqv~VE~~~G~l~v~~aG~ga~LaV  116 (150)
T 3kye_A           38 VPHTTSAVLLSCDGLVKSVHGLDPDSADHMAALASGLYSLGRSAGIR-FGDGGDVRQVVVELDSTLLFVSTAGSGTCLAV  116 (150)
T ss_dssp             STTEEEEEEEETTSCEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH-HSSSSCCCEEEEEESSEEEEEEEEETTEEEEE
T ss_pred             CCCeeEEEEEcCCCCEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCeEEEEEEeCCcEEEEEEcCCCcEEEE
Confidence            56999999999999944444556688999999999999999988765 45 7889999999999999999999 689999


Q ss_pred             eeccCccccchHHHHHHHHHHhhhhhcc
Q psy6241         179 YAKENVCFGMLRAKAEALATYLEAPLKQ  206 (211)
Q Consensus       179 ~a~~~v~~GlLk~K~~aLa~yLe~pL~~  206 (211)
                      ++++++++|++.-.++.+++.+.+-|.+
T Consensus       117 la~~~adlGlv~~em~~lv~rig~~Lt~  144 (150)
T 3kye_A          117 LAGREADAAVLGYEMAMLVKSVRPYLMT  144 (150)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHGGGGC-
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999998887764

>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B

Probab=99.16  E-value=9.8e-12  Score=98.11  Aligned_cols=77  Identities=58%  Similarity=0.946  Sum_probs=67.3

Q ss_pred             CCCCCcchhhHHHHhhhhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhh
Q psy6241           1 MLKPMLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMEC   80 (211)
Q Consensus         1 ml~~~l~~~vL~q~~g~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c   80 (211)
                      ||||+.++.+|.|+    ++.+++..+|++.+|.+||+++..+.|+..+|||+|++|+.|++.|+..|+++++++++++|
T Consensus         1 ML~~~~L~~~L~~l----~~~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~   76 (125)
T 1vet_B            1 MLRPKALTQVLSQA----NTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDC   76 (125)
T ss_dssp             CCCHHHHHHHHHHH----CCTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEE
T ss_pred             CCcHHHHHHHHHHc----CCCCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence            55555555555544    67899999999999999999887777999999999999999999999999999999999999


Q ss_pred             h
Q psy6241          81 S   81 (211)
Q Consensus        81 ~   81 (211)
                      +
T Consensus        77 ~   77 (125)
T 1vet_B           77 M   77 (125)
T ss_dssp             T
T ss_pred             C
Confidence            9

>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}

Probab=97.47  E-value=5e-05  Score=59.40  Aligned_cols=70  Identities=21%  Similarity=0.277  Sum_probs=48.1

Q ss_pred             HHHHhhhh--ccCCcceeeEeeecCceeeecCCCC-CCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241          11 LSQVLGQA--NTEGVQSTMLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus        11 L~q~~g~~--~t~~~~~~~Ll~~~G~lla~~~~~~-~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      |.+++.+-  .+.+++..++++.+|-+|+++...+ .++...||++|.+|+..++.++. |+...+++++++|+
T Consensus         5 l~~lL~~l~~~v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~-~~~G~~~qv~ve~~   77 (126)
T 3leq_A            5 LDQLLTGLVDRVAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMD-FRRGPVRQALIEMG   77 (126)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECS
T ss_pred             HHHHHHHHHhcCCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEeC
Confidence            45556443  4689999999999999999986543 48899999999999999999987 89999999999998

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=95.97  E-value=0.034  Score=45.19  Aligned_cols=101  Identities=11%  Similarity=0.157  Sum_probs=74.5

Q ss_pred             cccCceeeEeeccccceeeecCCCC-CCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeee
Q psy6241         100 LSNGLFSKRLMSYEGTLLAYSGHKD-NDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCL  178 (211)
Q Consensus       100 ~~~gV~s~~L~~~eG~LlA~a~~~d-~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl  178 (211)
                      .++|++++++-|.||.+|...+.++ .+.+.-..+.+. |.....++. .+.-..-|.++--+++..++-.....+++-+
T Consensus        34 rv~Gl~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsT-f~~A~dQ~s-KLglGknksII~~Y~~yqvVq~n~~Plvit~  111 (143)
T 3cpt_A           34 SVEGLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGS-KLGLSKNKSIICYYNTYQVVQFNRLPLVVSF  111 (143)
T ss_dssp             GSTTEEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHH-HHTCCCEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             ccCCeEEEEEECCCCcEEEEecCCCCchhhcccchhhh-HHHHHHHHh-hcCCCCCceEEEEecCeEEEEEecCCEEEEE
Confidence            4589999999999999998877533 344455555554 444433321 2344677888888888888777888999999


Q ss_pred             eeccCccccchHHHHHHHHHHhhh
Q psy6241         179 YAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       179 ~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      +|.++++.|+|..=-+.|..+|++
T Consensus       112 Ias~~aNtG~Il~Le~~L~p~l~~  135 (143)
T 3cpt_A          112 IASSSANTGLIVSLEKELAPLFEE  135 (143)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCchhHhhhHHHHHHHHHH
Confidence            999999999998877776666653

>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A

Probab=95.59  E-value=0.0083  Score=48.91  Aligned_cols=60  Identities=15%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             cCCcceeeEeeecCceeee-----cCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241          20 TEGVQSTMLMSYEGTLLAY-----SGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus        20 t~~~~~~~Ll~~~G~lla~-----~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      ..+++..+++..+|-+|+.     ....+ |+...||++|.+.+.=++-++. |...+++.++++++
T Consensus        26 v~Gv~~avlvs~DGl~ia~~~~~~~~~~~-d~d~lAA~~A~~~sl~~~~a~~-l~~G~~~q~~ve~~   90 (163)
T 1j3w_A           26 ETGARYALLIDRKGFVLAHKEALWAPKPP-PLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGE   90 (163)
T ss_dssp             HHCCSEEEEEETTSCEEEEEECTTSCCCS-CHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECS
T ss_pred             cCCceEEEEEcCCCCEEEeecccccCCCC-cHHHHHHHHHHHHHHHHHHHHH-hCCCCceEEEEEeC
Confidence            3589999999999999999     76666 9999999999999998888864 66777888888776

>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A

Probab=95.17  E-value=0.11  Score=43.15  Aligned_cols=99  Identities=17%  Similarity=0.320  Sum_probs=68.6

Q ss_pred             cccCceeeEeecc-ccceeeecCCCCCCc-------------hhhHHHHHHHHHHHHhcCccc---------cccCccee
Q psy6241         100 LSNGLFSKRLMSY-EGTLLAYSGHKDNDG-------------TVIAAITSNIWSAFEKNGRSA---------FKEDSLQM  156 (211)
Q Consensus       100 ~~~gV~s~~L~~~-eG~LlA~a~~~d~da-------------~vvAAIasnIW~ayer~g~~a---------~~~d~Lq~  156 (211)
                      -++-+++++|++. +|++|+|+...+.+.             +.-+=+.=.=|++=|+.-.+-         .+...-+-
T Consensus        28 ~t~~LqSS~LlS~~nGsIlSfa~s~~~~~~~~~~~~~SlnNLKMMsLLikDKWseDE~~p~eQ~t~ScY~~~i~~~~trI  107 (170)
T 4ftx_A           28 KTSSLQSSMIITATNGGILSYATSNNDVPKNSINEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKI  107 (170)
T ss_dssp             SCCSCSEEEEEETTTCCEEEEEECCSSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCSSEEEEEEETTEEEEE
T ss_pred             cCCceeeeEEEEcCCCcEEEEecCCCCcccCCcCccccchhHHHHHHHHHhhhhccccChhhhhcccceeEEeccceeEE
Confidence            3445789999965 999999998644441             223334445799888855431         10011122


Q ss_pred             eEEEecCCeEEhhhhh--hheeeeeeccCccccchHHHHHHHHH
Q psy6241         157 VLMECSNGKVAITQVA--NVLLCLYAKENVCFGMLRAKAEALAT  198 (211)
Q Consensus       157 llie~e~Gri~i~~Va--~lLLcl~a~~~v~~GlLk~K~~aLa~  198 (211)
                      -.-|.|+=+.|+++|-  ++||-++|+.+-++|+|-.|++++..
T Consensus       108 YTYEiEDLHaCVAqIP~SDLLLLfIAd~~yPyGLLv~KmK~al~  151 (170)
T 4ftx_A          108 YTYEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMR  151 (170)
T ss_dssp             EEEEETTEEEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHG
T ss_pred             EEEEhhhhHHHHhcCCCCCeEEEEeecCCCchHHHHHHHHHHHH
Confidence            2347778888888886  79999999999999999999988654

>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A

Probab=93.72  E-value=0.12  Score=39.61  Aligned_cols=77  Identities=10%  Similarity=0.138  Sum_probs=53.6

Q ss_pred             cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCc---cccccCcceeeEEEecCCeEEhhhhhhheeee
Q psy6241         102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGR---SAFKEDSLQMVLMECSNGKVAITQVANVLLCL  178 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~---~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl  178 (211)
                      -||.|++++|.+|.+|.++.+    .+-....|+.+|.-..+...   +.-.+|+|+++=|=.+.--|.|++=.+++|++
T Consensus        25 kgV~G~iIln~~G~pIrSt~d----~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimIapd~~~~LiV  100 (106)
T 2hz5_A           25 KGVQGIIVVNTEGIPIKSTMD----NPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIV  100 (106)
T ss_dssp             TTEEEEEEECTTCCEEEESSC----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEE
T ss_pred             CCceEEEEEcCCCCeEEEecC----chHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEEEecCCEEEEE
Confidence            489999999999999999864    23334445555555544332   12356899999999999999998888888887


Q ss_pred             eecc
Q psy6241         179 YAKE  182 (211)
Q Consensus       179 ~a~~  182 (211)
                      +=++
T Consensus       101 vQ~~  104 (106)
T 2hz5_A          101 IQNP  104 (106)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            7654

>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A

Probab=92.81  E-value=0.18  Score=38.14  Aligned_cols=80  Identities=9%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeec
Q psy6241         102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAK  181 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~  181 (211)
                      .||.|+++++.+|.+|-++-+ ...+.-+|+...+++...+..-++--..|+|.++=|=....-|.|.+=.+++|.++-+
T Consensus        16 kgV~G~iI~n~~G~pirst~d-~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~liVvQ~   94 (97)
T 3l7h_A           16 KGVVGTIVVNNEGIPVKSTLD-NTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQN   94 (97)
T ss_dssp             TTEEEEEEEETTSCEEEESSC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEEEEEC
T ss_pred             CCceEEEEECCCCCEeEEeCC-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEEEEec
Confidence            499999999999999987652 2333444444444433333222222345889999888888899988877788877755


Q ss_pred             c
Q psy6241         182 E  182 (211)
Q Consensus       182 ~  182 (211)
                      +
T Consensus        95 ~   95 (97)
T 3l7h_A           95 P   95 (97)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3lgo_A Protein SLM4; roadblock/LC7, domain SWAP, autophagy, membrane, transmembra transport, vacuole, protein binding; 2.85A {Saccharomyces cerevisiae}

Probab=92.53  E-value=1  Score=37.28  Aligned_cols=99  Identities=20%  Similarity=0.374  Sum_probs=65.3

Q ss_pred             cCceeeEeec-cccceeeecCCCCCCc-------------hhhHHHHHHHHHHHHhcCcccccc-------Ccce--eeE
Q psy6241         102 NGLFSKRLMS-YEGTLLAYSGHKDNDG-------------TVIAAITSNIWSAFEKNGRSAFKE-------DSLQ--MVL  158 (211)
Q Consensus       102 ~gV~s~~L~~-~eG~LlA~a~~~d~da-------------~vvAAIasnIW~ayer~g~~a~~~-------d~Lq--~ll  158 (211)
                      .-.++++|++ .+|++|+++...+...             +.-|=+.-.=|++=|..-++-..+       +...  ---
T Consensus        40 ~~LqSs~LlSatnGsIlSfa~~~~~~~~~~~~e~~SlNNLKMMaLLIkDKWsEDe~d~~~q~~~scy~~~~~~~~triYT  119 (172)
T 3lgo_A           40 SSLQSSMIITATNGGILSYATSNNDVPKNSINEINSVNNLKMMSLLIKDKWSEDENDTEEQHSNSCYPVEIDSFKTKIYT  119 (172)
T ss_dssp             CCCSEEEEEETTTCCEEEEECCC------------CHHHHHHHHHHHHHHHHTTTTCC---CCSSBCCEEETTEEECEEE
T ss_pred             ccceeeEEEEcCCCcEEEEeccCCccccCCCCcccchhhHHHHHHHHhhcccccccchhHhccccceeecccccceeEEE
Confidence            4578888884 7999999998643221             345556666788766422210000       1111  112


Q ss_pred             EEecCCeEEhhhhh--hheeeeeeccCccccchHHHHHHHHHHh
Q psy6241         159 MECSNGKVAITQVA--NVLLCLYAKENVCFGMLRAKAEALATYL  200 (211)
Q Consensus       159 ie~e~Gri~i~~Va--~lLLcl~a~~~v~~GlLk~K~~aLa~yL  200 (211)
                      -|.|+=..|+++|-  ++||-++|+.+-++|||-.|++..-+-+
T Consensus       120 yElEDLHacvAqIP~SdLLLlfIA~~~fPyGLLvmKmK~al~af  163 (172)
T 3lgo_A          120 YEMEDLHTCVAQIPNSDLLLLFIAEGSFPYGLLVIKIERAMREL  163 (172)
T ss_dssp             EESSSCEEEEEECTTTCEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred             EehhHHHHHHHhCCCCCeEEEEEecCCCCchHHHHHHHHHHHHH
Confidence            36778888999996  6999999999999999999998765533

>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*

Probab=90.83  E-value=0.8  Score=34.96  Aligned_cols=79  Identities=15%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             ccccCceeeEeeccccceeeecCC-CCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheee
Q psy6241          99 LLSNGLFSKRLMSYEGTLLAYSGH-KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLC  177 (211)
Q Consensus        99 ~~~~gV~s~~L~~~eG~LlA~a~~-~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLc  177 (211)
                      +...||.|++..|..|.-|++.+. +++.+-++.+|+-    -..+--.   +.++.--+.||.+.+++.|.+-....++
T Consensus        13 m~~pgvvGvlc~D~qGLcLg~~G~~s~~~AG~i~~la~----~AakL~p---~~~~~P~I~LEsDs~~~~Iqk~~~iTvA   85 (99)
T 3msh_A           13 MKNPSIVGVLCTDSQGLNLGCRGTLSDEHAGVISVLAQ----QAAKLTS---DPTDIPVVCLESDNGNIMIQKHDGITVA   85 (99)
T ss_dssp             HTSTTEEEEEEECTTCCEEEEEETCCGGGHHHHHHHHH----HHHHTCC---CSSCCCCEEEEETTEEEEEEEETTEEEE
T ss_pred             hccCCcEEEEEECCCCCcccccCCCCcccchHHHHHHH----HHHhcCC---CCCCCCEEEEEeCCceEEEEeCCcEEEE
Confidence            356899999999999999999876 5566666666643    2222111   2235567889999999999999888888


Q ss_pred             eeeccCc
Q psy6241         178 LYAKENV  184 (211)
Q Consensus       178 l~a~~~v  184 (211)
                      +|-..+.
T Consensus        86 V~k~~~~   92 (99)
T 3msh_A           86 VHKMASL   92 (99)
T ss_dssp             EEECC--
T ss_pred             EEccchh
Confidence            8866543

>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*

Probab=89.66  E-value=0.15  Score=40.55  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             HHHHhhhhcc-CCcceeeEeeecCceeeecCC----CCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241          11 LSQVLGQANT-EGVQSTMLMSYEGTLLAYSGH----KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus        11 L~q~~g~~~t-~~~~~~~Ll~~~G~lla~~~~----~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      +.+++..-.. .+++..+|...+|-+|++.+.    .+.|....||++|-.-.+=++-++. +.+.+++.++.+++
T Consensus        13 i~~iL~~L~~~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~-Lge~~~~~l~~eGe   87 (136)
T 3t12_B           13 AVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKL-LGEARFQEEVHQGE   87 (136)
T ss_dssp             HHHHHHHHHHHHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHH-TTCSCCCCEEEECS
T ss_pred             HHHHHHHHHhhcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HCCCchhHheEEcC
Confidence            4455544433 789999999999999999753    4569999999999999999988876 45666666666655

>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A

Probab=89.24  E-value=1.8  Score=33.55  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             cCceeeEeeccccceeeecCCC-CCCchhhHHHHHHHHHHHHhcCc---cccccCcceeeEEEecCCe----------EE
Q psy6241         102 NGLFSKRLMSYEGTLLAYSGHK-DNDGTVIAAITSNIWSAFEKNGR---SAFKEDSLQMVLMECSNGK----------VA  167 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~a~~~-d~da~vvAAIasnIW~ayer~g~---~a~~~d~Lq~llie~e~Gr----------i~  167 (211)
                      +.+..+-+++.||++-|++... .-.+.=+.+|+.    .|+..+.   .-+.-..-+++++-.|.++          ++
T Consensus        17 ~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~----~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~~i~~kkg~~Gv~   92 (130)
T 3nul_A           17 NHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKK----DFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVT   92 (130)
T ss_dssp             BCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHH----HHHSTTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEEE
T ss_pred             CcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHH----hccCchhhccCCEEECCeEEEEEEeCCCcEEEEecCCCeEE
Confidence            3688889999999998876543 444555555543    2332221   1233455667777766333          33


Q ss_pred             hhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         168 ITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       168 i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      |..-...|+..+.++.+..|-...+.+.|++||.+
T Consensus        93 i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~  127 (130)
T 3nul_A           93 IKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIE  127 (130)
T ss_dssp             EEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            33334666666677789999999999999999975

>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A

Probab=89.22  E-value=1.4  Score=33.95  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             cCceeeEeecccc-ceeeecCCCCCCchhhHHHHHHH--HHHHHhcCccccccCcceeeEEEecCCe---------EEhh
Q psy6241         102 NGLFSKRLMSYEG-TLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSNGK---------VAIT  169 (211)
Q Consensus       102 ~gV~s~~L~~~eG-~LlA~a~~~d~da~vvAAIasnI--W~ayer~g~~a~~~d~Lq~llie~e~Gr---------i~i~  169 (211)
                      ..|..+-+++.|| ++-|++....-.+.=+.+|+...  -.....+|   +.-..-+++++-.++..         ++|.
T Consensus        15 ~~~~~aAI~g~dG~svwA~s~gf~~~p~E~~~i~~~f~d~~~~~~~G---l~l~G~Ky~vir~d~~~i~~kkg~~Gv~i~   91 (127)
T 3d9y_A           15 GKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTG---IILAGQKYITIRAEGRSIYGKLQKEGIICV   91 (127)
T ss_dssp             SSCCEEEEEETTSSCEEEECTTCCCCHHHHHHHHHHHHSTTHHHHHC---EEETTEEEEEEEECSSEEEEEETTEEEEEE
T ss_pred             CceeeEEEEeCCCCeEEEeCCCCccCHHHHHHHHHHhcCcchhhcCC---EEEcCeEEEEEEeCcceEEEEcCCceEEEE
Confidence            4588888999999 78887765555555555554321  01111222   34455677777776333         3444


Q ss_pred             hhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         170 QVANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       170 ~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      +....|+..+.++.+..|-...+.+.|++||.+
T Consensus        92 kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~  124 (127)
T 3d9y_A           92 ATKLCILVSHYPETTLPGEAAKITEALADYLVG  124 (127)
T ss_dssp             ECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            444666666667789999999999999999975

>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A

Probab=83.86  E-value=3.8  Score=31.32  Aligned_cols=97  Identities=16%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             CceeeEeeccccceeeecCCCCCCchhhHHHHHHH--HHHHHhcCccccccCcceeeEEEecCC---------eEEhhhh
Q psy6241         103 GLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSNG---------KVAITQV  171 (211)
Q Consensus       103 gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnI--W~ayer~g~~a~~~d~Lq~llie~e~G---------ri~i~~V  171 (211)
                      .+..+-+++.||++.|++....-.+.=+.+|+.-.  -.....+|   +.-..-+++.+-.++.         -++|.+.
T Consensus        15 ~~~~aAIig~dGsvwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~G---i~l~G~KY~~i~~d~~~i~~kk~~~Gv~i~kT   91 (125)
T 1acf_A           15 AVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGG---FDLAGVHYVTLRADDRSIYGKKGSSGVITVKT   91 (125)
T ss_dssp             SCSEEEEEETTSCEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHC---EEETTEEEEEEEESSSEEEEEETTEEEEEEEC
T ss_pred             CcceEEEEcCCCCEEEecCCCccCHHHHHHHHHHhcCcchhhcCC---eEECCEEEEEEEecCcEEEeecCCCeEEEEEC
Confidence            57788899999999998755333343344443311  01222233   3345566666666632         2444444


Q ss_pred             hhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         172 ANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       172 a~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      ...++.-+.++++..|-.....+.|++||.+
T Consensus        92 ~~aivI~~y~~~~~~g~~~~~ve~ladyL~~  122 (125)
T 1acf_A           92 SKAILVGVYNEKIQPGTAANVVEKLADYLIG  122 (125)
T ss_dssp             SSEEEEEEECTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            5666666666779999999999999999975

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=83.72  E-value=6.7  Score=30.16  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=65.8

Q ss_pred             ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241         104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN  183 (211)
Q Consensus       104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~  183 (211)
                      |++++++|..|..+-+--..+-......++...++.......      +. ++-+++.++-+++-.+.+++.++++++.+
T Consensus         2 I~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~------~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~   74 (142)
T 2vgl_S            2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD------AK-HTNFVEFRNFKIIYRRYAGLYFCICVDVN   74 (142)
T ss_dssp             EEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC------TT-SCSEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC------CC-CCCEEEECCEEEEEEEECCEEEEEEeCCC
Confidence            688999999999888866543334445556677777666321      11 34478888888888888898888888887


Q ss_pred             ccccchHHHHHHHHHHhhhhhccc
Q psy6241         184 VCFGMLRAKAEALATYLEAPLKQV  207 (211)
Q Consensus       184 v~~GlLk~K~~aLa~yLe~pL~~i  207 (211)
                      .+.=++=.=++.+.+-|+.-+..+
T Consensus        75 ~N~l~~le~L~~~ve~l~~yf~~v   98 (142)
T 2vgl_S           75 DNNLAYLEAIHNFVEVLNEYFHNV   98 (142)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHccC
Confidence            776555555555555555544444

>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A

Probab=83.62  E-value=6.4  Score=30.16  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=62.9

Q ss_pred             CceeeEeecccc-ceeeecCCCCCCchhhHHHHHHH--HHHHHhcCccccccCcceeeEEEecCC---------eEEhhh
Q psy6241         103 GLFSKRLMSYEG-TLLAYSGHKDNDGTVIAAITSNI--WSAFEKNGRSAFKEDSLQMVLMECSNG---------KVAITQ  170 (211)
Q Consensus       103 gV~s~~L~~~eG-~LlA~a~~~d~da~vvAAIasnI--W~ayer~g~~a~~~d~Lq~llie~e~G---------ri~i~~  170 (211)
                      .|..+-+++.|| ++-|++....-.++=+.+|+...  -.....+|   +.-..-+++.+-.|+.         -+++..
T Consensus        14 ~~~~aAI~g~DG~svwA~s~~f~~~~~E~~~i~~~f~~~~~~~~~G---l~l~G~KY~~i~~d~~~i~~kk~~~Gi~i~k   90 (125)
T 1ypr_A           14 KVDKAVIYSRAGDAVWATSGGLSLQPNEIGEIVQGFDNPAGLQSNG---LHIQGQKFMLLRADDRSIYGRHDAEGVVCVR   90 (125)
T ss_dssp             SCSEEEEEETTSCCEEEEESCCCCCHHHHHHHHHHTTCTHHHHHHC---EEETTEEEEEEEECSSEEEEEETTEEEEEEE
T ss_pred             CccEEEEEeCCCCcEEEECCCCccCHHHHHHHHHhccCcchhccCC---eEECCEEEEEEecCCcEEEEecCCceEEEEE
Confidence            678888999999 99998754443444445554311  12223333   3345566777776632         233444


Q ss_pred             hhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         171 VANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       171 Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      -...++.-+.++.+..|-.....+.|++||.+
T Consensus        91 T~~aivI~~y~e~~~~g~~~~~ve~ladYL~~  122 (125)
T 1ypr_A           91 TKQTVIIAHYPPTVQAGEATKIVEQLADYLIG  122 (125)
T ss_dssp             CSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            44666666666789999999999999999975

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=83.28  E-value=9  Score=30.20  Aligned_cols=97  Identities=11%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             ceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeeccC
Q psy6241         104 LFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAKEN  183 (211)
Q Consensus       104 V~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~~~  183 (211)
                      |++++++|..|..+-+--..+...+--..+...+|+...+...       -++=+++.++-+++-.+.+++.++++++.+
T Consensus         2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~   74 (158)
T 1w63_Q            2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP-------KMCSFLEWRDLKVVYKRYASLYFCCAIEGQ   74 (158)
T ss_dssp             EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS-------SSCSEEEETTEEEEEEEETTEEEEEEECSS
T ss_pred             eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC-------CCCCeEEECCEEEEEEEECCEEEEEEecCC
Confidence            6889999999998887666544444344566777877655321       123477888888888888898899988887


Q ss_pred             ccccchHHHHHHHHHHhhhhhccc
Q psy6241         184 VCFGMLRAKAEALATYLEAPLKQV  207 (211)
Q Consensus       184 v~~GlLk~K~~aLa~yLe~pL~~i  207 (211)
                      .+.=++=.=++.+.+-|+.-+..+
T Consensus        75 ~Nel~~le~L~~~vevl~~yf~~v   98 (158)
T 1w63_Q           75 DNELITLELIHRYVELLDKYFGSV   98 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHccC
Confidence            776555555555555555544443

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=82.28  E-value=6.6  Score=31.15  Aligned_cols=96  Identities=16%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             cCceeeEeeccccceeeecCCCCC--CchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeee
Q psy6241         102 NGLFSKRLMSYEGTLLAYSGHKDN--DGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLY  179 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~a~~~d~--da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~  179 (211)
                      --|+++++++..|..+-+--..++  ..+--.++-..+|+...|.       +   .-+++.++-+++-.+.+++-++++
T Consensus        11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~-------~---~~i~~~~~~~~vy~~~~~Lyfv~~   80 (153)
T 3tjz_C           11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT-------D---SEIALLEGLTVVYKSSIDLYFYVI   80 (153)
T ss_dssp             BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSC-------C---CCEEEETTEEEEEEECSSCEEEEE
T ss_pred             HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-------C---CCEEEECCEEEEEEEECCEEEEEE
Confidence            358999999999998887665432  2233466777888886442       1   125677788888888889999999


Q ss_pred             eccCccccchHHHHHHHHHHhhhhh-ccc
Q psy6241         180 AKENVCFGMLRAKAEALATYLEAPL-KQV  207 (211)
Q Consensus       180 a~~~v~~GlLk~K~~aLa~yLe~pL-~~i  207 (211)
                      ++.+.+.-++=.=++.+.+-|+.-+ ..+
T Consensus        81 ~~~~eNel~ile~L~~~ve~l~~yf~~~v  109 (153)
T 3tjz_C           81 GSSYENELMLMTVLNCLFDSLSQMLRKNV  109 (153)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             EcCCCChHHHHHHHHHHHHHHHHHhcCCC
Confidence            9888776666666666666666665 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1vetb_	118	d.110.7.1 (B:) Late endosomal/lysosomal Mp1 intera	5e-22
d1vetb_	118	d.110.7.1 (B:) Late endosomal/lysosomal Mp1 intera	8e-20

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.9 bits (210), Expect = 5e-22
 Identities = 60/95 (63%), Positives = 77/95 (81%)

Query: 109 LMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAI 168
           L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG  AF EDSL+ +LM+C  G+VAI
Sbjct: 24  LLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAI 83

Query: 169 TQVANVLLCLYAKENVCFGMLRAKAEALATYLEAP 203
           T+VAN+LLC+YAKE V FGML+AKA+AL  YLE P
Sbjct: 84  TRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEP 118

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.1 bits (195), Expect = 8e-20
 Identities = 48/76 (63%), Positives = 62/76 (81%)

Query: 5  MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNG 64
          ML+PK L+QVL QANT GVQST+L++ EG+LLAYSG+ D D  V AAI SNIW+A+++NG
Sbjct: 1  MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 60

Query: 65 RSAFKEDSLQMVLMEC 80
            AF EDSL+ +LM+C
Sbjct: 61 NQAFNEDSLKFILMDC 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1vetb_	118	Late endosomal/lysosomal Mp1 interacting protein p	99.84
d1j3wa_	134	Giding protein MglB {Thermus thermophilus [TaxId:	99.3
d1vetb_	118	Late endosomal/lysosomal Mp1 interacting protein p	98.72
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	97.7
d2hz5a1	90	Dynein light chain 2A, cytoplasmic {Human (Homo sa	92.69
d1j3wa_	134	Giding protein MglB {Thermus thermophilus [TaxId:	90.26
d1acfa_	125	Profilin (actin-binding protein) {Acanthamoeba cas	88.53
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	87.97
d1d1ja_	138	Profilin (actin-binding protein) {Human (Homo sapi	82.74
d3nula_	130	Profilin (actin-binding protein) {Mouse-ear cress	80.88

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.5e-21  Score=149.72  Aligned_cols=103  Identities=60%  Similarity=1.013  Sum_probs=94.9

Q ss_pred             ccCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeee
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYA  180 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a  180 (211)
                      ++||++++|++.||.+|+++.+.+.|++.+||+++++|+..++.+.+.+..+.+++++||+++|+++++++++.+||+++
T Consensus        16 t~GV~~avlvs~DGl~ia~~~~~~~d~~~lAAi~a~~l~~~~~~a~~~~~~G~~~qviie~~~G~l~i~~~g~~~L~vla   95 (118)
T d1vetb_          16 TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYA   95 (118)
T ss_dssp             CTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCeeEEEEECCCCCeeeecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCCEEEEEEcccCeEEEEe
Confidence            45777777777788888777767889999999999999999998887788899999999999999999999999999999


Q ss_pred             ccCccccchHHHHHHHHHHhhhh
Q psy6241         181 KENVCFGMLRAKAEALATYLEAP  203 (211)
Q Consensus       181 ~~~v~~GlLk~K~~aLa~yLe~p  203 (211)
                      ++++++|+|+.+++.+++||++|
T Consensus        96 ~~~~~lGll~~e~~~~~~~L~~p  118 (118)
T d1vetb_          96 KETVGFGMLKAKAQALVQYLEEP  118 (118)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCchHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998

>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Giding protein MglB
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1.9e-12  Score=101.09  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=94.2

Q ss_pred             ccCceeeEeeccccceeeecCC----CCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhh-hhe
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGH----KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVA-NVL  175 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~----~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va-~lL  175 (211)
                      ..||++++|++.||.+|++.+.    ++.|+...||++|.+++..++-+.. +..++++++++|.++|.+.+++++ +.+
T Consensus        21 ~~Gv~~a~lvs~dGl~ia~~~~~~~~~~~d~~~lAA~~a~~~~~~~~~a~~-l~~g~~~~~~ie~~~g~v~i~~~g~~~~   99 (134)
T d1j3wa_          21 ETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGERMGLYVDEAGEHAL   99 (134)
T ss_dssp             HHCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECSSCEEEEEESSTTEE
T ss_pred             ccCceEEEEECCCCcEEEeecCcCCCccccHHHHHHHHHHHHHHHHHHHHH-hcCCChhheeEEcCCcEEEEEEeCCCcE
Confidence            3699999999999999998643    3568999999999999999998765 467789999999999999999999 699


Q ss_pred             eeeeeccCccccchHHHHHHHHHHhhhhhcc
Q psy6241         176 LCLYAKENVCFGMLRAKAEALATYLEAPLKQ  206 (211)
Q Consensus       176 Lcl~a~~~v~~GlLk~K~~aLa~yLe~pL~~  206 (211)
                      |++++++++++|++|..++..++.|.+-|++
T Consensus       100 L~vl~~~~~~LG~v~~~~~~a~~~L~~il~~  130 (134)
T d1j3wa_         100 LVLVFDETAPLGKVKLHGKRASEALARIAEE  130 (134)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887765

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.1e-09  Score=83.55  Aligned_cols=77  Identities=62%  Similarity=1.012  Sum_probs=67.7

Q ss_pred             CcchhhHHHHhhhhccCCcceeeEeeecCceeeecCCCCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241           5 MLKPKVLSQVLGQANTEGVQSTMLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus         5 ~l~~~vL~q~~g~~~t~~~~~~~Ll~~~G~lla~~~~~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      |+|||.|.++++|.+|.+++..++++.+|-+||+++..+.|+...|||++.+|+..++.+...|+.+.+++++++|+
T Consensus         1 ml~~~~L~~iL~~~~t~GV~~avlvs~DGl~ia~~~~~~~d~~~lAAi~a~~l~~~~~~a~~~~~~G~~~qviie~~   77 (118)
T d1vetb_           1 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCM   77 (118)
T ss_dssp             CCCHHHHHHHHHHHCCTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEET
T ss_pred             CCCHHHHHHHHHhcCCCCeeEEEEECCCCCeeeecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcC
Confidence            44555555556556789999999999999999998876679999999999999999999999999999999999998

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=7.2e-05  Score=57.03  Aligned_cols=102  Identities=10%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             ccccCceeeEeeccccceeeecCCCCC-CchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheee
Q psy6241          99 LLSNGLFSKRLMSYEGTLLAYSGHKDN-DGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLC  177 (211)
Q Consensus        99 ~~~~gV~s~~L~~~eG~LlA~a~~~d~-da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLc  177 (211)
                      ..++|++++++-|.||..|.+....+. +...-+.+ -+.|.....++. .+.-..-|.++-.+++..++......+.++
T Consensus        12 ~~v~Gl~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~-lstf~~a~dq~s-KLglg~~ksii~~Y~~~qvv~~~~~pl~vt   89 (116)
T d3cpta1          12 PSVEGLHAIVVSDRDGVPVIKVANDNAPEHALRPGF-LSTFALATDQGS-KLGLSKNKSIICYYNTYQVVQFNRLPLVVS   89 (116)
T ss_dssp             GGSTTEEEEEEECTTSCEEEEEECTTSCGGGGSHHH-HHHHHHHHHHHH-HHTCCCEEEEEEECSSEEEEEEEETTEEEE
T ss_pred             hhcCCeEEEEEEcCCCcEEEEecCCCChhhhcchHH-HHHHHHHHHhhc-ccCCCCCcEEEEEecCeEEEEEecCceEEE
Confidence            357899999999999999987765332 32334444 344666655553 345677899999999999999999999999


Q ss_pred             eeeccCccccchHHHHHHHHHHhhh
Q psy6241         178 LYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       178 l~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      ++|.++++.|++..=-+.+...|++
T Consensus        90 ~ia~~~aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          90 FIASSSANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCChHHHHHHHHHHHHHHhh
Confidence            9999999999999888888887764

>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Dynein light chain 2A, cytoplasmic
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.11  Score=36.95  Aligned_cols=79  Identities=10%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             cCceeeEeeccccceeeecCCCCCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEecCCeEEhhhhhhheeeeeec
Q psy6241         102 NGLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECSNGKVAITQVANVLLCLYAK  181 (211)
Q Consensus       102 ~gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e~Gri~i~~Va~lLLcl~a~  181 (211)
                      .||.|++++|.+|..|-++-+ ...+.-+|++.++.+...+..-++.-..|+|.++=|=...--|.|.+=.+++|.++=+
T Consensus        11 kgV~g~iIln~~G~pirst~d-~~~t~~yA~~~~~l~~~A~~~vrdlDp~del~flRlRTkk~Ei~IaPd~~~~liVvQ~   89 (90)
T d2hz5a1          11 KGVQGIIVVNTEGIPIKSTMD-NPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN   89 (90)
T ss_dssp             TTEEEEEEECTTCCEEEESSC-HHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEEEEC
T ss_pred             CCceEEEEECCCCCEEEEcCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcEEEEEcCCCEEEEEEeC
Confidence            689999999999999998763 2334445555555444443333333345888888888888888888766777766543

>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Giding protein MglB
species: Thermus thermophilus [TaxId: 274]

Probab=90.26  E-value=0.073  Score=39.77  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             CCcceeeEeeecCceeeecCC----CCCCchhhhHhhhhhhhhhhhccccccccchhhhhhhhhh
Q psy6241          21 EGVQSTMLMSYEGTLLAYSGH----KDNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS   81 (211)
Q Consensus        21 ~~~~~~~Ll~~~G~lla~~~~----~~~~a~v~aAIasNiW~ay~~~g~~a~~~d~l~~~l~~c~   81 (211)
                      .+++..++++.+|-+|++.+.    .+.|+...||++|...++=++-++. ++..+++.++++.+
T Consensus        22 ~Gv~~a~lvs~dGl~ia~~~~~~~~~~~d~~~lAA~~a~~~~~~~~~a~~-l~~g~~~~~~ie~~   85 (134)
T d1j3wa_          22 TGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKL-LGEARFQEEVHQGE   85 (134)
T ss_dssp             HCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHH-TTCSSCSEEEEECS
T ss_pred             cCceEEEEECCCCcEEEeecCcCCCccccHHHHHHHHHHHHHHHHHHHHH-hcCCChhheeEEcC
Confidence            589999999999999998543    2357889999999999999888875 35666666666644

>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Acanthamoeba castellanii [TaxId: 5755]

Probab=88.53  E-value=1.1  Score=32.46  Aligned_cols=97  Identities=16%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             CceeeEeeccccceeeecCCCCCCchhhHHHHHHHH--HHHHhcCccccccCcceeeEEEecCC---------eEEhhhh
Q psy6241         103 GLFSKRLMSYEGTLLAYSGHKDNDGTVIAAITSNIW--SAFEKNGRSAFKEDSLQMVLMECSNG---------KVAITQV  171 (211)
Q Consensus       103 gV~s~~L~~~eG~LlA~a~~~d~da~vvAAIasnIW--~ayer~g~~a~~~d~Lq~llie~e~G---------ri~i~~V  171 (211)
                      -|..+-+++.||++-|++......++=.-+|+..+.  +....+|   +.-..-+++++-.++.         -++|.+-
T Consensus        15 ~v~~aaI~g~DG~vwA~S~gf~~~~~E~~~i~~~f~d~~~~~~~G---i~i~G~KY~~~~~d~~~i~~kk~~~Gi~i~kT   91 (125)
T d1acfa_          15 AVTQAAILGLDGNTWATSAGFAVTPAQGTTLAGAFNNADAIRAGG---FDLAGVHYVTLRADDRSIYGKKGSSGVITVKT   91 (125)
T ss_dssp             SCSEEEEEETTSCEEEECTTCCCCHHHHHHHHHHHHCCHHHHHHC---EEETTEEEEEEEESSSEEEEEETTEEEEEEEC
T ss_pred             CcceeEEEcCCCCEEEECCCCCCCHHHHHHHHHhccChhhhhhCC---EEECCeEEEEEecCCCEEEEEcCCCCEEEEEc
Confidence            488888889999999987553333332333322111  1222233   2334556666665544         3444444


Q ss_pred             hhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         172 ANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       172 a~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      ...++.-+-+++...|........|++||..
T Consensus        92 ~~~iiig~y~e~~~~~~~~~~v~~ladYL~~  122 (125)
T d1acfa_          92 SKAILVGVYNEKIQPGTAANVVEKLADYLIG  122 (125)
T ss_dssp             SSEEEEEEECTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            4544444445688999999999999999975

>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human (Homo sapiens), isoform II [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Human (Homo sapiens), isoform II [TaxId: 9606]

Probab=82.74  E-value=1.6  Score=32.44  Aligned_cols=98  Identities=23%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             cCceeeEeecccc--ceeeecCCC---CCCchhhHHHHHHHHHHHHhcCccccccCcceeeEEEec--------------
Q psy6241         102 NGLFSKRLMSYEG--TLLAYSGHK---DNDGTVIAAITSNIWSAFEKNGRSAFKEDSLQMVLMECS--------------  162 (211)
Q Consensus       102 ~gV~s~~L~~~eG--~LlA~a~~~---d~da~vvAAIasnIW~ayer~g~~a~~~d~Lq~llie~e--------------  162 (211)
                      ..|..+-+...+|  ++=|++...   ...+.-+.++...-+.....+|.   .-..-++++|-.+              
T Consensus        14 g~v~~AAI~G~dg~~svWA~S~gf~~~~~e~~ei~~~~~~d~~~~~~~Gi---~l~G~Ky~~lr~d~~~~~~~~~~~~~~   90 (138)
T d1d1ja_          14 GCCQEAAIVGYCDAKYVWAATAGGVFQSITPIEIDMIVGKDREGFFTNGL---TLGAKKCSVIRDSLYVDGDCTMDIRTK   90 (138)
T ss_dssp             SCEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHHCSCSSHHHHHCE---EETTEEEEEEEEESSSTTCCEEEEEEC
T ss_pred             cccceEEEEecCCCceEEEECCCCCcCccCHHHHHHHhcCChhHHhhcCe---EECCcEEEEEeccccccCcceeeeccc
Confidence            4688888888776  577876532   23333344443433445555554   2344556665432              


Q ss_pred             -CCe-----EEhhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         163 -NGK-----VAITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       163 -~Gr-----i~i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                       .||     ++|..-..+|+..+.++.+..|......+.|++||.+
T Consensus        91 ~~gkk~~~Gv~i~kT~qaiiI~~y~~~~~~g~~~~~Ve~LadYL~~  136 (138)
T d1d1ja_          91 SQGGEPTYNVAVGRAGRALVIVMGKEGVHGGTLNKKAYELALYLRR  136 (138)
T ss_dssp             CSSSCCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcceEEEEEcCCEEEEEEeCCCCChHHHHHHHHHHHHHHHh
Confidence             233     7777777766666666799999999999999999986

>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Profilin (actin-binding protein)
family: Profilin (actin-binding protein)
domain: Profilin (actin-binding protein)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.88  E-value=3.5  Score=30.08  Aligned_cols=98  Identities=20%  Similarity=0.259  Sum_probs=62.8

Q ss_pred             ccCceeeEeeccccceeeecCCC-CCCchhhHHHHHHHHHHHHhcCcc---ccccCcceeeEEEecCCeE----------
Q psy6241         101 SNGLFSKRLMSYEGTLLAYSGHK-DNDGTVIAAITSNIWSAFEKNGRS---AFKEDSLQMVLMECSNGKV----------  166 (211)
Q Consensus       101 ~~gV~s~~L~~~eG~LlA~a~~~-d~da~vvAAIasnIW~ayer~g~~---a~~~d~Lq~llie~e~Gri----------  166 (211)
                      +..|..+-++..||++-|.+... .-.++=+..|+.    .|+.....   -+.-..-+++.+..+++.+          
T Consensus        16 tg~v~~AAI~g~DGsvWA~S~gf~~l~~~E~~~i~~----~f~~~~~~~~~Gi~~~G~KY~~lr~d~~~~i~~kk~~~Gi   91 (130)
T d3nula_          16 GNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKK----DFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGV   91 (130)
T ss_dssp             TBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHH----HHHSTTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEE
T ss_pred             CCeEeEEEEEcCCCCeeeeCCCCCCCCHHHHHHHHH----HhcCccccccCCeEECCeEEEEEecCCCcEEEEecCCCeE
Confidence            45688999999999999987643 233443444433    23322211   1334556777777776543          


Q ss_pred             EhhhhhhheeeeeeccCccccchHHHHHHHHHHhhh
Q psy6241         167 AITQVANVLLCLYAKENVCFGMLRAKAEALATYLEA  202 (211)
Q Consensus       167 ~i~~Va~lLLcl~a~~~v~~GlLk~K~~aLa~yLe~  202 (211)
                      +|.+-...++.-+.++++..|......+.|++||.+
T Consensus        92 ~i~KT~~~iIi~~y~~~~~~g~~~~~ve~LadYL~~  127 (130)
T d3nula_          92 TIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIE  127 (130)
T ss_dssp             EEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            233333555544556689999999999999999975