Psyllid ID: psy6269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRAQRAHMNMLDSSCRMRKQQNNVTYNMRHT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHccccccccccccccccccEEccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEccccccccccccHHHHHHHHcHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccHHEHHHHHccccccccccccHHHHHHHHHcccHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAvtqpltysrktRSKKLALYMILCVWVLALVitcppilgwydkdrhrdkrcgynqnrgyVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKkthlvlpsssimerdrrksLASCSFSlqrsglrltdkctrvsslkresktaQTLSVVVGGFIACWLPFFIVYLanpflpagtispllsnsLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRAQRAHMNMldsscrmrkqqnnvtynmrht
Flexible Loop (DISEMBL)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAvtqpltysrktrsKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIikkthlvlpsssimerDRRKSLASCsfslqrsglrltdkctrvsslkresktaqtlsVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKhcnksrrtraqrahmnmldsscrmrkqqnnvtynmrht
Low Complexity Region (SEG)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNtliiisvlttrrlrtvtNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRAQRAHMNMLDSSCRMRKQQNNVTYNMRHT
Disordered region (IsUnstruct)
*WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLP**************************L***C************AQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCN***********************************
Disordered Region (DISOPRED)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIA************************************************************CSFSLQRSGLRLT********************VVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRAQRAHMNMLDSS*****************
Disordered Region (DISEMBL)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSS**************SFSLQRSGLRLTDKC************AQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRAQRAHMNMLDSSCRMRKQQNNVTYNMRHT
Disordered Region (DISPRO)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNL********************************************************************KCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTR*Q****NMLDSSCRMRKQQ**********
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRTRAQRAHMNMLDSSCRMRKQQNNVTYNMRHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
P15823	515	Alpha-1B adrenergic recep	yes	N/A	0.568	0.403	0.393	9e-36
P18841	515	Alpha-1B adrenergic recep	N/A	N/A	0.568	0.403	0.393	1e-35
P35368	520	Alpha-1B adrenergic recep	yes	N/A	0.568	0.4	0.393	1e-35
P97717	514	Alpha-1B adrenergic recep	yes	N/A	0.568	0.404	0.393	1e-35
P35348	466	Alpha-1A adrenergic recep	no	N/A	0.620	0.487	0.344	1e-35
P43140	466	Alpha-1A adrenergic recep	no	N/A	0.620	0.487	0.337	2e-35
P18130	466	Alpha-1A adrenergic recep	yes	N/A	0.620	0.487	0.337	2e-35
P11615	417	Alpha-1B adrenergic recep	no	N/A	0.568	0.498	0.393	3e-35
Q9WU25	466	Alpha-1A adrenergic recep	no	N/A	0.620	0.487	0.329	5e-35
O02824	466	Alpha-1A adrenergic recep	no	N/A	0.620	0.487	0.341	5e-35

>sp|P15823|ADA1B_RAT Alpha-1B adrenergic receptor OS=Rattus norvegicus GN=Adra1b PE=2 SV=2

 Score =  151 bits (381), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/244 (39%), Positives = 125/244 (51%), Gaps = 36/244 (14%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G I CDIW ++DV  CTASILSLCAISIDRY+ V   L Y      +K A+  +L V
Sbjct: 111 WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRK-AILALLSV 169

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           WVL+ VI+  P+LGW +   + DK CG  +   Y +FS +GSF+IPL V+L +Y R+  V
Sbjct: 170 WVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIV 229

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHL-VLPSSSIMERDRRKS 180
             R   NLEA   +      EL    LR+          K  H   L S+     + R S
Sbjct: 230 AKRTTKNLEAGVMKEMSNSKELT---LRIH--------SKNFHEDTLSSTKAKGHNPRSS 278

Query: 181 LASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
           +A                  ++    RE K A+TL +VVG FI CWLPFFI       LP
Sbjct: 279 IA-----------------VKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA------LP 315

Query: 241 AGTI 244
            G++
Sbjct: 316 LGSL 319

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.
Rattus norvegicus (taxid: 10116)

>sp|P18841|ADA1B_MESAU Alpha-1B adrenergic receptor OS=Mesocricetus auratus GN=ADRA1B PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/244 (39%), Positives = 125/244 (51%), Gaps = 36/244 (14%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G I CDIW ++DV  CTASILSLCAISIDRY+ V   L Y      +K A+  +L V
Sbjct: 111 WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRK-AILALLSV 169

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           WVL+ VI+  P+LGW +   + DK CG  +   Y +FS +GSF+IPL V+L +Y R+  V
Sbjct: 170 WVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIV 229

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHL-VLPSSSIMERDRRKS 180
             R   NLEA   +      EL    LR+          K  H   L S+     + R S
Sbjct: 230 AKRTTKNLEAGVMKEMSNSKELT---LRIH--------SKNFHEDTLSSTKAKGHNPRSS 278

Query: 181 LASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
           +A                  ++    RE K A+TL +VVG FI CWLPFFI       LP
Sbjct: 279 IA-----------------VKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA------LP 315

Query: 241 AGTI 244
            G++
Sbjct: 316 LGSL 319

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mesocricetus auratus (taxid: 10036)

>sp|P35368|ADA1B_HUMAN Alpha-1B adrenergic receptor OS=Homo sapiens GN=ADRA1B PE=1 SV=3

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/244 (39%), Positives = 125/244 (51%), Gaps = 36/244 (14%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G I CDIW ++DV  CTASILSLCAISIDRY+ V   L Y      +K A+  +L V
Sbjct: 111 WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRK-AILALLSV 169

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           WVL+ VI+  P+LGW +   + DK CG  +   Y +FS +GSF+IPL V+L +Y R+  V
Sbjct: 170 WVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIV 229

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHL-VLPSSSIMERDRRKS 180
             R   NLEA   +      EL    LR+          K  H   L S+     + R S
Sbjct: 230 AKRTTKNLEAGVMKEMSNSKELT---LRIH--------SKNFHEDTLSSTKAKGHNPRSS 278

Query: 181 LASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
           +A                  ++    RE K A+TL +VVG FI CWLPFFI       LP
Sbjct: 279 IA-----------------VKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA------LP 315

Query: 241 AGTI 244
            G++
Sbjct: 316 LGSL 319

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Homo sapiens (taxid: 9606)

>sp|P97717|ADA1B_MOUSE Alpha-1B adrenergic receptor OS=Mus musculus GN=Adra1b PE=1 SV=2

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/244 (39%), Positives = 125/244 (51%), Gaps = 36/244 (14%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G I CDIW ++DV  CTASILSLCAISIDRY+ V   L Y      +K A+  +L V
Sbjct: 110 WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRK-AILALLSV 168

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           WVL+ VI+  P+LGW +   + DK CG  +   Y +FS +GSF+IPL V+L +Y R+  V
Sbjct: 169 WVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIV 228

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHL-VLPSSSIMERDRRKS 180
             R   NLEA   +      EL    LR+          K  H   L S+     + R S
Sbjct: 229 AKRTTKNLEAGVMKEMSNSKELT---LRIH--------SKNFHEDTLSSTKAKGHNPRSS 277

Query: 181 LASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
           +A                  ++    RE K A+TL +VVG FI CWLPFFI       LP
Sbjct: 278 IA-----------------VKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA------LP 314

Query: 241 AGTI 244
            G++
Sbjct: 315 LGSL 318

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|P35348|ADA1A_HUMAN Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 31/258 (12%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG + C+IW ++DV  CTASI+ LC ISIDRY+ V+ PL Y      ++  L  +LCV
Sbjct: 92  WAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRR-GLMALLCV 150

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct: 151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVY-V 209

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSL 181
           +A+R +    L       + +  ++ LR+                           RK+ 
Sbjct: 210 VAKRES--RGLKSGLKTDKSDSEQVTLRI--------------------------HRKN- 240

Query: 182 ASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA 241
           A    S   S    T    R+    RE K A+TL +VVG F+ CWLPFF+V     F P 
Sbjct: 241 APAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPD 300

Query: 242 GTISPLLSNSLTWLGKLS 259
              S  +   + WLG L+
Sbjct: 301 FKPSETVFKIVFWLGYLN 318

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Homo sapiens (taxid: 9606)

>sp|P43140|ADA1A_RAT Alpha-1A adrenergic receptor OS=Rattus norvegicus GN=Adra1a PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 131/258 (50%), Gaps = 31/258 (12%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG + C+IW ++DV  CTASI+ LC ISIDRY+ V+ PL Y      ++  +  +LCV
Sbjct: 92  WAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRR-GVRALLCV 150

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           WVL+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct: 151 WVLSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYVPLAIILVMYCRVY-V 209

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSL 181
           +A+R +    L       + +  ++ LR+                           RK++
Sbjct: 210 VAKRES--RGLKSGLKTDKSDSEQVTLRI--------------------------HRKNV 241

Query: 182 ASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA 241
            +    +  S    T    R+    RE K A+TL +VVG F+ CWLPFF+V     F P 
Sbjct: 242 PAEGGGVS-SAKNKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPD 300

Query: 242 GTISPLLSNSLTWLGKLS 259
              S  +   + WLG L+
Sbjct: 301 FKPSETVFKIVFWLGYLN 318

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Rattus norvegicus (taxid: 10116)

>sp|P18130|ADA1A_BOVIN Alpha-1A adrenergic receptor OS=Bos taurus GN=ADRA1A PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 129/258 (50%), Gaps = 31/258 (12%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG + C++W ++DV  CTASI+ LC ISIDRY+ V+ PL Y      K+  L  +LCV
Sbjct: 92  WAFGRVFCNVWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQKR-GLMALLCV 150

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct: 151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYVPLTIILVMYCRVY-V 209

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSL 181
           +A+R +    L       + +  ++ LR+          +K   V  S     +++    
Sbjct: 210 VAKRES--RGLKSGLKTDKSDSEQVTLRIH---------RKNAQVGGSGVTSAKNK---- 254

Query: 182 ASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA 241
                         T    R+    RE K A+TL +VVG F+ CWLPFF+V     F P 
Sbjct: 255 --------------THFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPD 300

Query: 242 GTISPLLSNSLTWLGKLS 259
              S  +     WLG L+
Sbjct: 301 FRPSETVFKIAFWLGYLN 318

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Bos taurus (taxid: 9913)

>sp|P11615|ADA1B_CANFA Alpha-1B adrenergic receptor (Fragment) OS=Canis familiaris GN=ADRA1B PE=2 SV=1

 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/244 (39%), Positives = 125/244 (51%), Gaps = 36/244 (14%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G I CDIW ++DV  CTASILSLCAISIDRY+ V   L Y      +K A+  +L V
Sbjct: 14  WVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRK-AILALLGV 72

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           WVL+ VI+  P+LGW +   + DK CG  +   Y +FS +GSF+IPL V+L +Y R+  V
Sbjct: 73  WVLSTVISIGPLLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIV 132

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHL-VLPSSSIMERDRRKS 180
             R   NLEA   +      EL    LR+          K  H   L S+     + R S
Sbjct: 133 AKRTTKNLEAGVMKEMSNSKELT---LRIH--------SKNFHEDTLSSTKAKGHNPRSS 181

Query: 181 LASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
           +A                  ++    RE K A+TL +VVG FI CWLPFFI       LP
Sbjct: 182 IA-----------------VKLFKFSREKKAAKTLGIVVGMFILCWLPFFIA------LP 218

Query: 241 AGTI 244
            G++
Sbjct: 219 LGSL 222

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Canis familiaris (taxid: 9615)

>sp|Q9WU25|ADA1A_CAVPO Alpha-1A adrenergic receptor OS=Cavia porcellus GN=ADRA1A PE=2 SV=2

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 31/258 (12%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG + C+IW ++DV  CTASI+SLC ISIDRY+ V+ PL Y      ++  L  +LC+
Sbjct: 92  WAFGRVFCNIWAAVDVLCCTASIMSLCIISIDRYIGVSYPLRYPTIVTQRR-GLRALLCL 150

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           W L+LVI+  P+ GW       +  C  N++  YV+FS +GSF++PL ++L +Y R+  V
Sbjct: 151 WALSLVISIGPLFGWRQPAPQDETICQINEDPSYVLFSALGSFYVPLAIILVMYCRVY-V 209

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSL 181
           +A+R +    L       + +  ++ LR          I + +  L  S +     +   
Sbjct: 210 VAKRES--RGLTSGLKTDKSDSEQVTLR----------IHRKNAPLGGSGVASSKNKTHF 257

Query: 182 ASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA 241
           +                  R+    RE K A+TL +VVG F+ CWLPFF+V     F P 
Sbjct: 258 S-----------------VRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPD 300

Query: 242 GTISPLLSNSLTWLGKLS 259
              S  +   + WLG L+
Sbjct: 301 FKPSETVFKIVFWLGYLN 318

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Cavia porcellus (taxid: 10141)

>sp|O02824|ADA1A_RABIT Alpha-1A adrenergic receptor OS=Oryctolagus cuniculus GN=ADRA1A PE=2 SV=1

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 128/258 (49%), Gaps = 31/258 (12%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG + C+IW ++DV  CTASI+SLC ISIDRY+ V+ PL Y      ++  L  +LCV
Sbjct: 92  WAFGRVFCNIWAAVDVLCCTASIISLCVISIDRYIGVSYPLRYPTIVTQRR-GLRALLCV 150

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           W  +LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct: 151 WAFSLVISVGPLFGWRQPAPDDETICQINEEPGYVLFSALGSFYVPLTIILAMYCRVY-V 209

Query: 122 IARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSL 181
           +A+R +    L       + +  ++ LR+                           RK+ 
Sbjct: 210 VAKRES--RGLKSGLKTDKSDSEQVTLRI--------------------------HRKN- 240

Query: 182 ASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA 241
           A    S   S    T    R+    RE K A+TL +VVG F+ CWLPFF+V     F P 
Sbjct: 241 APAGGSGVASAKNKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPD 300

Query: 242 GTISPLLSNSLTWLGKLS 259
                 +   + WLG L+
Sbjct: 301 FKPPETVFKIVFWLGYLN 318

This alpha-adrenergic receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated by G(q) and G(11) proteins.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
302028363	473	tyramine receptor type 2 [Chilo suppress	0.792	0.613	0.421	6e-72
357604202	336	tyramine receptor [Danaus plexippus]	0.762	0.830	0.427	9e-72
189240825	442	PREDICTED: similar to putative GPCR clas	0.756	0.626	0.416	1e-71
283945472	452	tyramine receptor [Bombyx mori] gi|27028	0.795	0.643	0.423	1e-71
270288716	452	tyramine receptor [Bombyx mori]	0.795	0.643	0.426	1e-71
195570057	443	GD20216 [Drosophila simulans] gi|1941989	0.666	0.550	0.460	2e-70
383854380	405	PREDICTED: octopamine receptor-like [Meg	0.762	0.688	0.453	1e-69
340709482	410	PREDICTED: tyramine receptor 1-like isof	0.762	0.680	0.453	5e-69
82617616	405	putative tyramine receptor [Apis mellife	0.762	0.688	0.459	5e-69
380023713	405	PREDICTED: tyramine receptor 1-like [Api	0.762	0.688	0.456	1e-68

>gi|302028363|gb|ADK91078.1| tyramine receptor type 2 [Chilo suppressalis]

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 158/375 (42%), Positives = 207/375 (55%), Gaps = 85/375 (22%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           WE GWILCDIW+SLD+ +CTASILSLCAIS+DRYLAVT+PLTYSR+ RSKKLAL MI  V
Sbjct: 143 WELGWILCDIWISLDILMCTASILSLCAISVDRYLAVTRPLTYSRRRRSKKLALTMIFFV 202

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           W+ A  ITCPP+LGWY+ D ++   C YNQN GYVVFS MGSFF+P++V++YVYARISCV
Sbjct: 203 WIAAGAITCPPMLGWYEPDHNQGGVCRYNQNAGYVVFSAMGSFFLPMVVMVYVYARISCV 262

Query: 122 IARRHNNLEAL----NHQHTLG----RHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSI- 172
           +ARRH  L +     N +  L       +    KL +R +  K      T     SS   
Sbjct: 263 VARRHQQLASTATKCNKKPKLSCIRTESDSGSDKLSLRQSASKQASKASTQQSECSSQQG 322

Query: 173 ---------MERDRRKSLA-----------------SCSFSLQRS------GLRLTDKCT 200
                     E++ R+S                     +F  + +       ++      
Sbjct: 323 DHKCPCCFKAEKENRQSKQYRGSKERESRFYNEVTFKSNFKYKNTTRHRTHSMKENIDNN 382

Query: 201 RVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSG 260
           RVSSL+RE+KTAQTLS+VVGGF+ACWLPFF+ YL  PF+P+  ++P+L   LTWLG  + 
Sbjct: 383 RVSSLRRETKTAQTLSLVVGGFVACWLPFFLYYLLTPFIPSSYVNPVLMYILTWLGWFNS 442

Query: 261 SLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRL 320
           ++                                         PF  A +      DFR+
Sbjct: 443 AIN----------------------------------------PFIYAFY----SPDFRV 458

Query: 321 AFWRLTLKHCNKSRR 335
           AFWRLT+K C +++R
Sbjct: 459 AFWRLTIKKCKRNKR 473

Source: Chilo suppressalis

Species: Chilo suppressalis

Genus: Chilo

Family: Crambidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604202|gb|EHJ64085.1| tyramine receptor [Danaus plexippus]

 Score =  276 bits (707), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 162/379 (42%), Positives = 205/379 (54%), Gaps = 100/379 (26%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           WE GWILCDIW+SLD+ LCTASILSLCAIS+DRYLAVT+PLTYSR+ RSKKLAL MIL V
Sbjct: 13  WELGWILCDIWISLDILLCTASILSLCAISVDRYLAVTRPLTYSRRRRSKKLALTMILFV 72

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
           W+ A  ITCPP+ GWY+ D ++   C YNQN GYVVFS MGSFF+P++V++YVYARISCV
Sbjct: 73  WIAAGAITCPPMFGWYEPDHNQGGVCRYNQNPGYVVFSAMGSFFLPMIVMVYVYARISCV 132

Query: 122 IARRH-------------NNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLP 168
           +ARRH             NNL  +  +   G       KL +R N  K +    T    P
Sbjct: 133 VARRHQQLASTTTKCGKRNNLSCIRTESDSGSD-----KLSLRQNASKQVSKSSTQ---P 184

Query: 169 SSSIMERDRRKSLASCSFSLQR---------SGLRLTDKCT------------------- 200
                  D++     C F  ++            R  ++ T                   
Sbjct: 185 GECSTHSDQK---CPCCFRSEKRRHSKHRKEKESRFYNEVTFKANVKYKSNRNRNLSVKE 241

Query: 201 ----RVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLG 256
               RVSSL+RE+KTAQTLS+VVGGFIACWLPFF+ Y+  PF+P+  ++ +L   LTWLG
Sbjct: 242 HMENRVSSLRRETKTAQTLSLVVGGFIACWLPFFLYYILTPFIPSNYVNAVLMYILTWLG 301

Query: 257 KLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRS 316
             + ++                                         PF  A +      
Sbjct: 302 WFNSAIN----------------------------------------PFIYAFY----SP 317

Query: 317 DFRLAFWRLTLKHCNKSRR 335
           DFR+AFWRLT+K C +SRR
Sbjct: 318 DFRMAFWRLTIKKCKRSRR 336

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240825|ref|XP_001811970.1| PREDICTED: similar to putative GPCR class a orphan receptor 4 (AGAP004034-PA) [Tribolium castaneum] gi|270014268|gb|EFA10716.1| hypothetical protein TcasGA2_TC012122 [Tribolium castaneum]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/384 (41%), Positives = 210/384 (54%), Gaps = 107/384 (27%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +WE GW+LCDIWVSLD+ LCTASILSLCAIS+DRYLAVTQPL+YSR+ RSK+LA  MIL 
Sbjct: 56  AWELGWVLCDIWVSLDILLCTASILSLCAISVDRYLAVTQPLSYSRRRRSKRLAFTMILV 115

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISC 120
           VW+ + +ITCPP+ GWY+  RH +K C YN+N GYV+FS MGSFFIP++V+LYVY RISC
Sbjct: 116 VWMSSALITCPPMFGWYEPGRHEEKNCRYNKNTGYVIFSAMGSFFIPMMVMLYVYVRISC 175

Query: 121 VIARRHNNL-----------------------------------------------EALN 133
           V+A+RH+ L                                               ++LN
Sbjct: 176 VVAQRHDQLAHIDTHSRKSQKLVISVKEESDIDRVSSECEDQNLRCPSGQSAEPLNQSLN 235

Query: 134 HQH--TLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRS 191
           H+   +LG   L +  L   FN+  +   +   L  P     +R R +SL          
Sbjct: 236 HEQRKSLGTRSL-RSPLNYSFNHEPLTAQRSASLYRPQPFTPQRSRPESLN--------- 285

Query: 192 GLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNS 251
                +  TRVSS +RE+KTAQTLS+V+GGFIACWLPFFI YL  PF+P+  ++ L+ + 
Sbjct: 286 ----FEPATRVSSFRRETKTAQTLSIVMGGFIACWLPFFIFYLLTPFIPSNQVNSLIMSY 341

Query: 252 LTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHI 311
           LTWLG  + ++                                         PF  A + 
Sbjct: 342 LTWLGWFNSAIN----------------------------------------PFIYAFY- 360

Query: 312 TVPRSDFRLAFWRLTLKHCNKSRR 335
                DFR+AFWRLT+KH +K+RR
Sbjct: 361 ---SPDFRIAFWRLTVKHFSKTRR 381

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283945472|ref|NP_001164649.1| tyramine receptor [Bombyx mori] gi|270288718|dbj|BAI52938.1| tyramine receptor [Bombyx mori]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 201/366 (54%), Gaps = 75/366 (20%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
            WE GWILCDIW+SLD+ LCTASILSLCAIS+DRYLAVT+PLTYSR+ RSKKLAL MI  
Sbjct: 130 EWELGWILCDIWISLDILLCTASILSLCAISVDRYLAVTRPLTYSRRRRSKKLALTMIFF 189

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISC 120
           VW+ A  ITCPP+ GWY+ D ++   C YNQN GYVVFS MGSFF+P+ V++YVYARISC
Sbjct: 190 VWIAAGAITCPPMFGWYEPDHNQGGVCRYNQNPGYVVFSAMGSFFLPMAVMVYVYARISC 249

Query: 121 VIARRHNNL-----------------EALNHQHTLGRHELAKIKLRVRFNY--------- 154
           V+ARRH+ L                 E+ +    L   + A  +     N          
Sbjct: 250 VVARRHHQLASSTKCSKKDKLSCIRTESDSGSDKLSLRQSASKQTSKNSNQQSETSLGDH 309

Query: 155 -CKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRL----TDKCTRVSSLKRES 209
            C     KK H    S     +   +     ++  + +  R       +  RVSSL+RE+
Sbjct: 310 KCCCFKEKKAHHKYRSKEKESKFYNEVTFKANYKYKNTTRRSHSVREHENNRVSSLRRET 369

Query: 210 KTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTL 269
           KTAQTLS+VVGGF+ACWLPFF+ YL  PF+P+  ++P+L   LTWLG  + ++       
Sbjct: 370 KTAQTLSLVVGGFVACWLPFFLYYLLTPFIPSNYVNPVLMYILTWLGWFNSAIN------ 423

Query: 270 IIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKH 329
                                             PF  A +      DFRLAFWRLT++ 
Sbjct: 424 ----------------------------------PFIYAFY----SPDFRLAFWRLTIRK 445

Query: 330 CNKSRR 335
           C +++R
Sbjct: 446 CMRNKR 451

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270288716|dbj|BAI52937.1| tyramine receptor [Bombyx mori]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/366 (42%), Positives = 203/366 (55%), Gaps = 75/366 (20%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
            WE GWILCDIW+SLD+ LCTASILSLCAIS+DRYLAVT+PLTYSR+ RSKKLAL MI  
Sbjct: 130 EWELGWILCDIWISLDILLCTASILSLCAISVDRYLAVTRPLTYSRRRRSKKLALTMIFF 189

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISC 120
           VW+ A  ITCPP+ GWY+ D ++   C YNQN GYVVFS MGSFF+P+ V++YVYARISC
Sbjct: 190 VWIAAGAITCPPMFGWYEPDHNQGGVCRYNQNPGYVVFSAMGSFFLPMAVMVYVYARISC 249

Query: 121 VIARRHNNL---------EALNHQHTLGRHELAKIKLR------------------VRFN 153
           V+ARRH+ L         + L+   T       K+ LR                  +  +
Sbjct: 250 VVARRHHQLASSTKCSKKDKLSCIRTESDSGSDKLSLRQSASKQTSKNSNPQSETSLGDH 309

Query: 154 YCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRL----TDKCTRVSSLKRES 209
            C     KK H    S     +   +     ++  + +  R       +  RVSSL+RE+
Sbjct: 310 KCCCFKEKKAHHKYRSKEKESKFYNEVTFKANYKYKNTTRRSHSVREHENNRVSSLRRET 369

Query: 210 KTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTL 269
           KTAQTLS+VVGGF+ACWLPFF+ YL  PF+P+  ++P+L   LTWLG  + ++       
Sbjct: 370 KTAQTLSLVVGGFVACWLPFFLYYLLTPFIPSNYVNPVLMYILTWLGWFNSAIN------ 423

Query: 270 IIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKH 329
                                             PF  A +      DFRLAFWRLT++ 
Sbjct: 424 ----------------------------------PFIYAFY----SPDFRLAFWRLTIRK 445

Query: 330 CNKSRR 335
           C +++R
Sbjct: 446 CMRNKR 451

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570057|ref|XP_002103025.1| GD20216 [Drosophila simulans] gi|194198952|gb|EDX12528.1| GD20216 [Drosophila simulans]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/328 (46%), Positives = 185/328 (56%), Gaps = 84/328 (25%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           SW+ GW+LCDIW+SLDV LCTASILSLCAIS+DRYLAVT+PLTYSRK RSK+LAL MIL 
Sbjct: 180 SWQLGWVLCDIWISLDVLLCTASILSLCAISVDRYLAVTRPLTYSRKRRSKRLALIMILI 239

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISC 120
           VW+LAL ITCPP+LGWY+  R   + C YNQN GYV+FS MGSFFIP+ V++YVYARISC
Sbjct: 240 VWLLALAITCPPMLGWYEPGRRDLRECRYNQNEGYVIFSAMGSFFIPMAVMIYVYARISC 299

Query: 121 VIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKS 180
           VIA RH+N+  ++  +  G                             S +       KS
Sbjct: 300 VIASRHDNMTDISVHNKAG-----------------------VTTTSTSGNTGANTNSKS 336

Query: 181 LASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLP 240
           L++                 R++SLK+E+KT QTLS+VVGGFIACWLPFFI YL  PFL 
Sbjct: 337 LSN-----------------RITSLKKENKTTQTLSIVVGGFIACWLPFFINYLITPFLA 379

Query: 241 AGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGI 300
               S +L+ +LTWLG  + ++                                      
Sbjct: 380 EHQASQMLAKALTWLGWFNSAIN------------------------------------- 402

Query: 301 FVMPFAVALHITVPRSDFRLAFWRLTLK 328
              PF  A +      DFR AFWRLT K
Sbjct: 403 ---PFIYAFY----SVDFRAAFWRLTCK 423

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854380|ref|XP_003702699.1| PREDICTED: octopamine receptor-like [Megachile rotundata]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/335 (45%), Positives = 199/335 (59%), Gaps = 56/335 (16%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +WE G +LCD WVSLD+ LCTASILSLCAISIDRYLAVTQPL YSR+ RSK+LA  MI+ 
Sbjct: 103 TWELGEVLCDSWVSLDILLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKRLAGLMIVA 162

Query: 61  VWVLALVITCPPILGWYDKDRHRD-KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
           VWVLA  IT PP+LG + +  +RD K+C YN +  YV+FS MGSFF+P+LV+LYVY RIS
Sbjct: 163 VWVLAGAITSPPLLGCFPRATNRDSKKCSYNMDSSYVIFSAMGSFFLPMLVMLYVYGRIS 222

Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
           CVIA RH NLEA   ++T  R         V     K I +++T  V  S   +  DR  
Sbjct: 223 CVIASRHRNLEATESENTRPRRN-------VLIERAKSIRVRRTECVTGS---VTYDRGS 272

Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFL 239
                S + ++ G+  + + + ++ + RE+KTA TL+VVVGGF+ACWLPFFI+YLA PF+
Sbjct: 273 DEVEPSTTSKKPGIVRSHQQSCINRVARETKTAGTLAVVVGGFVACWLPFFILYLATPFM 332

Query: 240 PAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG 299
           P      +L  +LTWLG ++ ++                                     
Sbjct: 333 PMAP-PDILMPALTWLGWINSAIN------------------------------------ 355

Query: 300 IFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSR 334
               PF  A +     +DFRLAFWRLT + C K+R
Sbjct: 356 ----PFIYAFY----SADFRLAFWRLTCRKCFKNR 382

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709482|ref|XP_003393336.1| PREDICTED: tyramine receptor 1-like isoform 1 [Bombus terrestris] gi|340709484|ref|XP_003393337.1| PREDICTED: tyramine receptor 1-like isoform 2 [Bombus terrestris] gi|350420434|ref|XP_003492507.1| PREDICTED: tyramine receptor 1-like isoform 1 [Bombus impatiens] gi|350420437|ref|XP_003492508.1| PREDICTED: tyramine receptor 1-like isoform 2 [Bombus impatiens]

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 152/335 (45%), Positives = 199/335 (59%), Gaps = 56/335 (16%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W+ G +LCD WVSLD+ LCTASILSLCAISIDRYLAVTQPL YSR+ RSK+LA  MI+ 
Sbjct: 103 TWQLGEVLCDSWVSLDILLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKRLAGLMIVA 162

Query: 61  VWVLALVITCPPILGWYDKDRHRD-KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
           VWVLA  IT PP+LG + +  +RD K+C YN +  YV+FS MGSFF+P+LV+LYVY RIS
Sbjct: 163 VWVLAGAITSPPLLGCFPRATNRDTKKCSYNMDSSYVIFSAMGSFFLPMLVMLYVYGRIS 222

Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
           CVIA RH NLEA   ++   R         V     K I +++T  V  S +    DR  
Sbjct: 223 CVIASRHRNLEATESENIRPRRN-------VLIERAKSIRVRRTECVTSSVTC---DRAS 272

Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFL 239
             A    + +RSG+  + + + ++ + RE+KTA TL+VVVGGF+ACWLPFFI+YLA PF+
Sbjct: 273 DEAEPPSTSKRSGIVRSHQQSCINRVARETKTAATLAVVVGGFVACWLPFFILYLATPFV 332

Query: 240 PAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG 299
           P      +L  +LTWLG ++ ++                                     
Sbjct: 333 PMEP-PDILMPALTWLGWINSAIN------------------------------------ 355

Query: 300 IFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSR 334
               PF  A +     +DFRLAFWRLT + C K+R
Sbjct: 356 ----PFIYAFY----SADFRLAFWRLTCRKCFKTR 382

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|82617616|ref|NP_001032395.1| putative tyramine receptor [Apis mellifera] gi|76096787|gb|ABA39280.1| tyramine receptor [Apis mellifera]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 154/335 (45%), Positives = 199/335 (59%), Gaps = 56/335 (16%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +WE G +LCD WVSLD+ LCTASILSLCAISIDRYLAVTQPL YSR+ RSK+LA  MI+ 
Sbjct: 103 TWELGPMLCDSWVSLDILLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKRLAGLMIVA 162

Query: 61  VWVLALVITCPPILGWYDKDRHRD-KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
           VWVLA  IT PP+LG + +  +RD K+C YN +  YV+FS MGSFF+P+LV+LYVY RIS
Sbjct: 163 VWVLAGAITSPPLLGCFPRATNRDIKKCSYNMDSSYVIFSAMGSFFLPMLVMLYVYGRIS 222

Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
           CVIA RH NLEA   ++   R         V     K I  ++T  V  S +    DR  
Sbjct: 223 CVIASRHRNLEATESENVRPRRN-------VLIERAKSIRARRTECVTNSVTC---DRPS 272

Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFL 239
             A  S + ++SG+  + + + ++ + RE+KTA TL+VVVGGF+ACWLPFFI+YLA PF+
Sbjct: 273 DEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGTLAVVVGGFVACWLPFFILYLATPFV 332

Query: 240 PAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG 299
           P      +L  +LTWLG ++ ++                                     
Sbjct: 333 PVEPPD-ILMPALTWLGWINSAIN------------------------------------ 355

Query: 300 IFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSR 334
               PF  A +     +DFRLAFWRLT + C KSR
Sbjct: 356 ----PFIYAFY----SADFRLAFWRLTCRKCFKSR 382

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023713|ref|XP_003695657.1| PREDICTED: tyramine receptor 1-like [Apis florea]

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/335 (45%), Positives = 198/335 (59%), Gaps = 56/335 (16%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +WE G +LCD WVSLD+ LCTASILSLCAISIDRYLAVTQPL YSR+ RSK+LA  MI+ 
Sbjct: 103 TWELGPMLCDSWVSLDILLCTASILSLCAISIDRYLAVTQPLIYSRRRRSKRLAGLMIVA 162

Query: 61  VWVLALVITCPPILGWYDKDRHRD-KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
           VWVLA  IT PP+LG + +  +RD K+C YN +  YV+FS MGSFF+P+LV+LYVY RIS
Sbjct: 163 VWVLAGAITSPPLLGCFPRATNRDIKKCSYNMDSSYVIFSAMGSFFLPMLVMLYVYGRIS 222

Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
           CVIA RH NLEA   ++   R         V     K I  ++T  V  S +    DR  
Sbjct: 223 CVIASRHRNLEATESENVRPRRN-------VLIERAKSIRARRTECVTNSVTC---DRPS 272

Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFL 239
             A  S + ++ G+  + + + ++ + RE+KTA TL+VVVGGF+ACWLPFFI+YLA PF+
Sbjct: 273 DEAEPSSTSKKPGIVRSHQQSCINRVARETKTAGTLAVVVGGFVACWLPFFILYLATPFV 332

Query: 240 PAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG 299
           P      +L  +LTWLG ++ ++                                     
Sbjct: 333 PVEPPD-ILMPALTWLGWINSAIN------------------------------------ 355

Query: 300 IFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSR 334
               PF  A +     +DFRLAFWRLT + C KSR
Sbjct: 356 ----PFIYAFY----SADFRLAFWRLTCRKCFKSR 382

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
FB|FBgn0038542	631	TyrR "Tyramine receptor" [Dros	0.401	0.232	0.668	8.6e-73
FB|FBgn0038541	586	TyrRII "Tyramine receptor II"	0.352	0.220	0.679	1.3e-63
ZFIN|ZDB-GENE-041114-51	481	adra1bb "adrenergic receptor,	0.352	0.268	0.484	3.9e-43
MGI|MGI:96273	421	Htr1a "5-hydroxytryptamine (se	0.316	0.275	0.423	7.4e-40
UNIPROTKB|E7EW16	427	ADRA1A "Alpha-1A adrenergic re	0.352	0.302	0.423	1.5e-39
UNIPROTKB|F1NAZ2	422	HTR1A "Uncharacterized protein	0.316	0.274	0.440	2.5e-39
UNIPROTKB|Q9TSW7	466	alpha-1A "Alpha-1A adrenergic	0.352	0.276	0.430	2.5e-39
UNIPROTKB|F1MYI6	466	ADRA1A "Alpha-1A adrenergic re	0.352	0.276	0.423	2.7e-39
UNIPROTKB|P18130	466	ADRA1A "Alpha-1A adrenergic re	0.352	0.276	0.423	2.7e-39
UNIPROTKB|P35348	466	ADRA1A "Alpha-1A adrenergic re	0.352	0.276	0.423	3.1e-39

FB|FBgn0038542 TyrR "Tyramine receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 549 (198.3 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 99/148 (66%), Positives = 120/148 (81%)

Query:     1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
             SW+ GW+LCDIW+SLDV LCTASILSLCAIS+DRYLAVT+PLTYSRK RSK+LAL MIL 
Sbjct:   181 SWQLGWVLCDIWISLDVLLCTASILSLCAISVDRYLAVTRPLTYSRKRRSKRLALIMILI 240

Query:    61 VWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISC 120
             VW+LAL ITCPP+LGWY+  R   + C YNQN GYV+FS MGSFFIP+ V++YVYARISC
Sbjct:   241 VWLLALAITCPPMLGWYEPGRRDLRECRYNQNEGYVIFSAMGSFFIPMAVMIYVYARISC 300

Query:   121 VIARRHNNLEALN-HQHTLGRHELAKIK 147
             VIA RH+N+  ++ H     R+  A ++
Sbjct:   301 VIASRHDNMTDISVHNKKFKRYTAADVE 328

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007211 "octopamine or tyramine signaling pathway" evidence=IC

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0008226 "tyramine receptor activity" evidence=IDA

FB|FBgn0038541 TyrRII "Tyramine receptor II" [Drosophila melanogaster (taxid:7227)]

 Score = 490 (177.5 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 89/131 (67%), Positives = 105/131 (80%)

Query:     1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
             +W FGWILCDIW+SLD+ LC+ SILSLCAIS+DRYLAVTQPLTYS+K RSK+LAL MIL 
Sbjct:   139 TWRFGWILCDIWISLDILLCSGSILSLCAISLDRYLAVTQPLTYSKKRRSKRLALLMILV 198

Query:    61 VWVLALVITCPPILGWYDKDRHRDK--RCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARI 118
             VW+ AL ITCPP LGWY+  RH+ +   C YNQN+GYVVFS MGSFFIPL V+LYVY +I
Sbjct:   199 VWITALSITCPPYLGWYEVGRHQAEFVDCRYNQNKGYVVFSAMGSFFIPLTVMLYVYVKI 258

Query:   119 SCVIARRHNNL 129
               V+  R   +
Sbjct:   259 GYVLTSRRQRI 269

GO:0004989 "octopamine receptor activity" evidence=ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

ZFIN|ZDB-GENE-041114-51 adra1bb "adrenergic receptor, alpha 1bb" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
 Identities = 63/130 (48%), Positives = 84/130 (64%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W FG I CD+W ++DV  CTASI+SLC ISIDRY+ V+ PL Y      ++ AL  +L V
Sbjct:   113 WVFGRIFCDVWAAVDVLCCTASIMSLCVISIDRYIGVSHPLQYPNIVTGRR-ALLAMLGV 171

Query:    62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
             WVL+LVI+  P+LGW +     D  C  N+   Y +FS +GSF+IPL+V+L +Y R+  V
Sbjct:   172 WVLSLVISIGPLLGWKEPPSPDDTVCAINEEPFYALFSSLGSFYIPLIVILVMYCRVYVV 231

Query:   122 IARRHNNLEA 131
               R   NLEA
Sbjct:   232 AKRTTKNLEA 241

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:96273 Htr1a "5-hydroxytryptamine (serotonin) receptor 1A" [Mus musculus (taxid:10090)]

 Score = 286 (105.7 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 50/118 (42%), Positives = 79/118 (66%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W  G + CD++++LDV  CT+SIL LCAI++DRY A+T P+ Y  K R+ + A  +I   
Sbjct:   102 WTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK-RTPRRAAALISLT 160

Query:    62 WVLALVITCPPILGWYD-KDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARI 118
             W++  +I+ PP+LGW   +DR     C  +++ GY ++S  G+F+IPLL++L +Y RI
Sbjct:   161 WLIGFLISIPPMLGWRTPEDRSNPNECTISKDHGYTIYSTFGAFYIPLLLMLVLYGRI 218

GO:0001965 "G-protein alpha-subunit binding" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007198 "adenylate cyclase-inhibiting serotonin receptor signaling pathway" evidence=ISO

GO:0007210 "serotonin receptor signaling pathway" evidence=ISO;IDA

GO:0007610 "behavior" evidence=IEA

GO:0008144 "drug binding" evidence=ISO

GO:0008283 "cell proliferation" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030815 "negative regulation of cAMP metabolic process" evidence=IEA

GO:0031117 "positive regulation of microtubule depolymerization" evidence=ISO

GO:0042221 "response to chemical stimulus" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043203 "axon hillock" evidence=ISO

GO:0046883 "regulation of hormone secretion" evidence=IEA

GO:0050795 "regulation of behavior" evidence=IEA

GO:0051378 "serotonin binding" evidence=ISO

GO:0060259 "regulation of feeding behavior" evidence=ISO

GO:0097114 "N-methyl-D-aspartate receptor clustering" evidence=ISO

GO:0097458 "neuron part" evidence=IEA

UNIPROTKB|E7EW16 ADRA1A "Alpha-1A adrenergic receptor" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 55/130 (42%), Positives = 80/130 (61%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W FG + C+IW ++DV  CTASI+ LC ISIDRY+ V+ PL Y      ++  L  +LCV
Sbjct:    92 WAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRR-GLMALLCV 150

Query:    62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
             W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct:   151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVV 210

Query:   122 IARRHNNLEA 131
               R    L++
Sbjct:   211 AKRESRGLKS 220

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1NAZ2 HTR1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 52/118 (44%), Positives = 80/118 (67%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W  G ++CDI++SLDV  CT+SIL LCAI++DRY A+T P+ Y  K R+ + A  +I   
Sbjct:   105 WTLGQVICDIFISLDVLCCTSSILHLCAIALDRYWAITDPIDYVNK-RTPRRAAVLISLT 163

Query:    62 WVLALVITCPPILGWYD-KDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARI 118
             W++  +I+ PP+LGW   +DR     C  +++ GY ++S  G+F+IPLL++L +Y RI
Sbjct:   164 WLIGFLISIPPMLGWRTPEDRSNPDACTISKDHGYTIYSTFGAFYIPLLLMLVLYGRI 221

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004993 "serotonin receptor activity" evidence=IEA

UNIPROTKB|Q9TSW7 alpha-1A "Alpha-1A adrenergic receptor" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 56/130 (43%), Positives = 80/130 (61%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W FG + C+IW ++DV  CTASI+ LC ISIDRY+ V+ PL Y      K+  L  +LCV
Sbjct:    92 WAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQKR-GLMALLCV 150

Query:    62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
             W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct:   151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYVPLTIILVMYCRVYVV 210

Query:   122 IARRHNNLEA 131
               R    L++
Sbjct:   211 AKRESRGLKS 220

GO:0097195 "pilomotor reflex" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045987 "positive regulation of smooth muscle contraction" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0001985 "negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

UNIPROTKB|F1MYI6 ADRA1A "Alpha-1A adrenergic receptor" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
 Identities = 55/130 (42%), Positives = 80/130 (61%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W FG + C++W ++DV  CTASI+ LC ISIDRY+ V+ PL Y      K+  L  +LCV
Sbjct:    92 WAFGRVFCNVWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQKR-GLMALLCV 150

Query:    62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
             W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct:   151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYVPLTIILVMYCRVYVV 210

Query:   122 IARRHNNLEA 131
               R    L++
Sbjct:   211 AKRESRGLKS 220

GO:0005886 "plasma membrane" evidence=IEA

GO:0097195 "pilomotor reflex" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045987 "positive regulation of smooth muscle contraction" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0001985 "negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

UNIPROTKB|P18130 ADRA1A "Alpha-1A adrenergic receptor" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
 Identities = 55/130 (42%), Positives = 80/130 (61%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W FG + C++W ++DV  CTASI+ LC ISIDRY+ V+ PL Y      K+  L  +LCV
Sbjct:    92 WAFGRVFCNVWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQKR-GLMALLCV 150

Query:    62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
             W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct:   151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYVPLTIILVMYCRVYVV 210

Query:   122 IARRHNNLEA 131
               R    L++
Sbjct:   211 AKRESRGLKS 220

GO:0031965 "nuclear membrane" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0043410 "positive regulation of MAPK cascade" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

UNIPROTKB|P35348 ADRA1A "Alpha-1A adrenergic receptor" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
 Identities = 55/130 (42%), Positives = 80/130 (61%)

Query:     2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
             W FG + C+IW ++DV  CTASI+ LC ISIDRY+ V+ PL Y      ++  L  +LCV
Sbjct:    92 WAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRR-GLMALLCV 150

Query:    62 WVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCV 121
             W L+LVI+  P+ GW       +  C  N+  GYV+FS +GSF++PL ++L +Y R+  V
Sbjct:   151 WALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVV 210

Query:   122 IARRHNNLEA 131
               R    L++
Sbjct:   211 AKRESRGLKS 220

GO:0001985 "negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0003084 "positive regulation of systemic arterial blood pressure" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0045987 "positive regulation of smooth muscle contraction" evidence=IEA

GO:0060073 "micturition" evidence=IEA

GO:0097195 "pilomotor reflex" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=ISS;NAS;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0006939 "smooth muscle contraction" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0090037 "positive regulation of protein kinase C signaling cascade" evidence=ISS

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISS

GO:0060452 "positive regulation of cardiac muscle contraction" evidence=ISS

GO:0060402 "calcium ion transport into cytosol" evidence=ISS

GO:0045907 "positive regulation of vasoconstriction" evidence=ISS

GO:0045760 "positive regulation of action potential" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISS

GO:0032229 "negative regulation of synaptic transmission, GABAergic" evidence=ISS

GO:0009725 "response to hormone stimulus" evidence=ISS

GO:0007568 "aging" evidence=ISS

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISS

GO:0007202 "activation of phospholipase C activity" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	366
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	6e-28
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	3e-07
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-05
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	5e-04
PHA02834	323	PHA02834, PHA02834, chemokine receptor-like protei	8e-04

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score =  109 bits (274), Expect = 6e-28
 Identities = 53/152 (34%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG  LC +   L V    ASIL L AISIDRYLA+  PL Y R  R+ + A  +IL V
Sbjct: 44  WPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRI-RTPRRAKVLILVV 102

Query: 62  WVLALVITCPPILGW--YDKDRHRDKRCG-----YNQNRGYVVFSGMGSFFIPLLVVLYV 114
           WVLAL+++ PP+L       +      C       +  R Y + S +  F +PLLV+L  
Sbjct: 103 WVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVC 162

Query: 115 YARISCVIARRHNNLEALNHQHTLGRHELAKI 146
           Y  I   + R+     A   +      +  K 
Sbjct: 163 YTLILRTL-RKRARSGASQARAKRSSSKERKA 193

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C I   L       S+  +  +S+DRY+A+  P   S K  + K    + L +
Sbjct: 104 WSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHP-VKSNKINTVKYGYIVSLVI 162

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCG--YNQNRGY--------VVFSGMGSFFIPLLVV 111
           W+++++ T P +  +  K  H    C   YN             +   GM    IPL ++
Sbjct: 163 WIISIIETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGM---LIPLTIL 219

Query: 112 LYVYARISCVIARRHNN 128
           LY Y++I   +   + +
Sbjct: 220 LYCYSKILITLKGINKS 236

Length = 335

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 274 VLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           +L T++LRT TN F+++LAVAD L  + + P+A+   + 
Sbjct: 3   ILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVG 41

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 187 SLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPF--LPAGTI 244
           +L++       +     S  +E K A+ L VVV  F+ CWLP+ IV L +    L    +
Sbjct: 169 TLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRL 228

Query: 245 SPLLSNSLTWLGKLS 259
            P       WL  ++
Sbjct: 229 LPTALLITLWLAYVN 243

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 31/126 (24%), Positives = 67/126 (53%), Gaps = 13/126 (10%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG  +C + + +      +++  +  ISIDRY+ V      + K ++K ++L ++L V
Sbjct: 91  WIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVN----ATKIKNKSISLSVLLSV 146

Query: 62  --WVLALVITCPPILGWYDKDRHRDKRC---GYNQNRGYVVF----SGMGSFFIPLLVVL 112
             WV +++++ P ++ +Y  +    K+C    Y++N  +  F      +    IPL++++
Sbjct: 147 AAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILI 206

Query: 113 YVYARI 118
           Y Y++I
Sbjct: 207 YCYSKI 212

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
KOG4220|consensus	503		100.0
KOG4219|consensus	423		99.98
PHA03234	338	DNA packaging protein UL33; Provisional	99.97
PHA02834	323	chemokine receptor-like protein; Provisional	99.97
PHA03235	409	DNA packaging protein UL33; Provisional	99.96
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.96
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.95
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.94
KOG2087|consensus	363		99.72
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.52
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.42
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	99.31
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	99.14
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.84
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	98.63
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.45
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	98.19
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	98.16
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	98.11
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	98.09
KOG4219|consensus	423		97.83
KOG4193|consensus	610		97.82
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	97.75
KOG4220|consensus	503		97.74
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	97.7
PHA03234	338	DNA packaging protein UL33; Provisional	97.69
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	97.45
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.36
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	97.31
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	97.2
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	97.16
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	97.04
PHA02638	417	CC chemokine receptor-like protein; Provisional	97.03
PHA02834	323	chemokine receptor-like protein; Provisional	96.96
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	96.93
PHA03235	409	DNA packaging protein UL33; Provisional	96.87
PF02076	283	STE3: Pheromone A receptor; InterPro: IPR001499 G-	96.39
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	96.35
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	96.23
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	96.17
KOG4564|consensus	473		96.01
PHA03087	335	G protein-coupled chemokine receptor-like protein;	95.72
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	95.26
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	95.14
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	95.09
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	95.02
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	93.46
PF01534	328	Frizzled: Frizzled/Smoothened family membrane regi	92.62
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	92.23
PF13853	144	7tm_4: Olfactory receptor	85.2
KOG2087|consensus	363		82.44

>KOG4220|consensus

Probab=100.00  E-value=1.6e-36  Score=275.03  Aligned_cols=289  Identities=29%  Similarity=0.434  Sum_probs=201.7

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      .|++|..+|.++..+.++...+|++++.+|++|||+.|.+|+.|+.+. |+++|.++|++.|++++++..|-++.|....
T Consensus        95 ~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakR-TtkrA~~MI~~AW~iSfiLWaPaIl~Wqyiv  173 (503)
T KOG4220|consen   95 YWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKR-TTKRAGLMIGAAWVLSFVLWAPAILFWQYIV  173 (503)
T ss_pred             ccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccc-cchHHHHHHHHHHHHHHHHHHHHHHhhHhhe
Confidence            599999999999999999999999999999999999999999999998 7788999999999999999999888884433


Q ss_pred             C---CCCCcccccC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhh-------HhHhh
Q psy6269          81 R---HRDKRCGYNQ--NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHEL-------AKIKL  148 (366)
Q Consensus        81 ~---~~~~~C~~~~--~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~-------~~~~~  148 (366)
                      +   ...+.|..++  +........+..|.+|..+|.++|.+|++..+++.+.....+..........       .+...
T Consensus       174 GkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~  253 (503)
T KOG4220|consen  174 GKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKS  253 (503)
T ss_pred             eeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccC
Confidence            3   2478897654  4445566777889999999999999999999999888777665421111000       00000


Q ss_pred             hhcccccc-----------------------------------ee---eeccccccCCCCc----------------ccc
Q psy6269         149 RVRFNYCK-----------------------------------VI---IIKKTHLVLPSSS----------------IME  174 (366)
Q Consensus       149 ~~~~~~~~-----------------------------------~~---~~~~~~~~~~~~~----------------~~~  174 (366)
                      +..+.+.+                                   +.   .....+.+.+.+.                ..+
T Consensus       254 s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D  333 (503)
T KOG4220|consen  254 SGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVD  333 (503)
T ss_pred             CCCCCCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCC
Confidence            00000000                                   00   0000000000000                000


Q ss_pred             ccc-------ccccc-----ccc----------cccc---ccCCcc--------------------ccccccchhhhhhH
Q psy6269         175 RDR-------RKSLA-----SCS----------FSLQ---RSGLRL--------------------TDKCTRVSSLKRES  209 (366)
Q Consensus       175 ~~~-------~~~~~-----~~~----------~~~~---~~~~~~--------------------~~~~~~~~~~~~~~  209 (366)
                      .+.       ..++.     ...          ..+.   .+..+.                    +...+.+....+|+
T Consensus       334 ~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rEr  413 (503)
T KOG4220|consen  334 EEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRER  413 (503)
T ss_pred             ccccccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHH
Confidence            000       00000     000          0000   000010                    11111223337899


Q ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHH
Q psy6269         210 KTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVM  289 (366)
Q Consensus       210 k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~  289 (366)
                      |++|++.++.++|++||.||.|+.++..+|. ++++..+..+..||.|+||.+||+                        
T Consensus       414 KAAkTLsAILlAFIiTWtPYNImVlv~tFC~-~CiP~tlW~~gYwLCYINSTiNP~------------------------  468 (503)
T KOG4220|consen  414 KAAKTLSAILLAFILTWTPYNIMVLVNTFCK-NCIPETLWTFGYWLCYINSTINPL------------------------  468 (503)
T ss_pred             HHHHHHHHHHHHHHHHcccceeeeehHhhcc-cccchhHhhhhhheeeecccccHH------------------------
Confidence            9999999999999999999999999999984 567889999999999999999999                        


Q ss_pred             HHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHhhhhcccccc
Q psy6269         290 SLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRR  335 (366)
Q Consensus       290 ~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~  335 (366)
                                      .|++    +|..||+.|++++.+.+++.+.
T Consensus       469 ----------------CYAL----CNatFrkTfk~lL~Cr~~~~~~  494 (503)
T KOG4220|consen  469 ----------------CYAL----CNATFRKTFKRLLLCRWKKRRT  494 (503)
T ss_pred             ----------------HHHH----HhHHHHHHHHHhheeeecccch
Confidence                            9999    9999999999999666665553

>KOG4219|consensus

Probab=99.98  E-value=7.9e-33  Score=251.71  Aligned_cols=216  Identities=25%  Similarity=0.423  Sum_probs=175.4

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.||.++|++..|+...+..+|++++++||+|||+||.+|++  .+. +++.+..+++++|++++++++|..+......
T Consensus       100 ~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~--~r~-s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~  176 (423)
T KOG4219|consen  100 EWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQ--PRP-SRRSSKIIILLIWALALLLALPQLLYSSVEE  176 (423)
T ss_pred             ccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcc--cCC-CCcceeehhHHHHHHHHHHhccceeeeeeEE
Confidence            6999999999999999999999999999999999999999998  344 8999999999999999999999888652222


Q ss_pred             C-----CCCCcccccC---------C----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchh
Q psy6269          81 R-----HRDKRCGYNQ---------N----RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHE  142 (366)
Q Consensus        81 ~-----~~~~~C~~~~---------~----~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~  142 (366)
                      .     .....|...+         .    ..|...+.++.+++|++++.++|..|.+++|..+...+..          
T Consensus       177 ~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~----------  246 (423)
T KOG4219|consen  177 LYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQ----------  246 (423)
T ss_pred             eeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchh----------
Confidence            1     1234453222         1    1277788899999999999999999999999764211110          


Q ss_pred             hHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHH
Q psy6269         143 LAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGF  222 (366)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f  222 (366)
                                                                              .+.....+.++|+.||+++|++.|
T Consensus       247 --------------------------------------------------------d~~~~~~kak~K~vkmliiVV~~F  270 (423)
T KOG4219|consen  247 --------------------------------------------------------DRKHEQLKAKKKVVKMLIIVVVIF  270 (423)
T ss_pred             --------------------------------------------------------chhhHHHHHHHHHHHHHHHHHHHH
Confidence                                                                    022345678999999999999999


Q ss_pred             HHhchhHHHHHHHhhhCCCC---CCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhh
Q psy6269         223 IACWLPFFIVYLANPFLPAG---TISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG  299 (366)
Q Consensus       223 ~vcwlP~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (366)
                      .+||+||.++.++....++-   .....++....||+..|+++||+                                  
T Consensus       271 aicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPi----------------------------------  316 (423)
T KOG4219|consen  271 AICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPI----------------------------------  316 (423)
T ss_pred             HHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccH----------------------------------
Confidence            99999999999998654321   12345677889999999999999                                  


Q ss_pred             hhccceEEEeeccccchhHHHHHHHHhhhh
Q psy6269         300 IFVMPFAVALHITVPRSDFRLAFWRLTLKH  329 (366)
Q Consensus       300 ~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~  329 (366)
                            ||++    .|+.||..+++.|+.+
T Consensus       317 ------IY~~----lN~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  317 ------IYCF----LNKRFRGGFRRAFRWC  336 (423)
T ss_pred             ------hhhh----hHHHHHHHHhhhhhee
Confidence                  9999    9999999999999533

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.97  E-value=9.8e-32  Score=252.24  Aligned_cols=204  Identities=14%  Similarity=0.199  Sum_probs=155.3

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|+||+++|++..++.....++|++++++||+|||++|++|.+++.   +++++..++++.|+.+++.++|+++......
T Consensus        97 ~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~---~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~  173 (338)
T PHA03234         97 LFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK---KNNHIGRNIGILFLASAMCAIPAALFVKTEG  173 (338)
T ss_pred             CccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh---hhhhHHHHHHHHHHHHHHHHhhHhHeeeeee
Confidence            5999999999999999999999999999999999999999997532   3333445666679999999999876543222


Q ss_pred             CC-CCCcccccCC--cchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhc
Q psy6269          81 RH-RDKRCGYNQN--RGYVV------FSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVR  151 (366)
Q Consensus        81 ~~-~~~~C~~~~~--~~~~~------~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (366)
                      .. +...|...+.  ..+..      ....+.+++|+++|++||.+|.+++++.+                         
T Consensus       174 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------------------  228 (338)
T PHA03234        174 KKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------------------  228 (338)
T ss_pred             cCCCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------------
Confidence            22 2357865442  22222      12233578999999999999998886521                         


Q ss_pred             ccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269         152 FNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI  231 (366)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i  231 (366)
                                                                           .++++|++||+++++++|++||+||++
T Consensus       229 -----------------------------------------------------~~~~~k~~k~i~~vv~vF~iCWlPy~i  255 (338)
T PHA03234        229 -----------------------------------------------------EKKHKKTLFFIRILILSFLCIQIPNIA  255 (338)
T ss_pred             -----------------------------------------------------hhhhhhhhhHHHHHHHHHHHHHhHHHH
Confidence                                                                 034678999999999999999999999


Q ss_pred             HHHHhhhC---C-CCCC----ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhcc
Q psy6269         232 VYLANPFL---P-AGTI----SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVM  303 (366)
Q Consensus       232 ~~~~~~~~---~-~~~~----~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (366)
                      ..++..+.   . .+..    ......+..+++++|||+||+                                      
T Consensus       256 v~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPi--------------------------------------  297 (338)
T PHA03234        256 ILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPL--------------------------------------  297 (338)
T ss_pred             HHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHH--------------------------------------
Confidence            88764432   1 1111    123456778899999999999                                      


Q ss_pred             ceEEEeeccccchhHHHHHHHHhhhh
Q psy6269         304 PFAVALHITVPRSDFRLAFWRLTLKH  329 (366)
Q Consensus       304 ~~iy~~~~~~~~~~fR~~~~~~~~~~  329 (366)
                        +|++    .+++||+++++++++.
T Consensus       298 --IY~f----~~~~FR~~~~~~~~~~  317 (338)
T PHA03234        298 --VYAF----TGGDFRLRFTACFQDF  317 (338)
T ss_pred             --HHHH----hhHHHHHHHHHHHHHH
Confidence              9999    9999999999988664

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.97  E-value=2.9e-31  Score=248.54  Aligned_cols=211  Identities=21%  Similarity=0.415  Sum_probs=161.6

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++...+..+|++++++||+|||++|++|++++..  +.+++..+++++|+++++.++|+++++....
T Consensus        90 ~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~--~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~  167 (323)
T PHA02834         90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNK--SISLSVLLSVAAWVCSVILSMPAMVLYYVDN  167 (323)
T ss_pred             CcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCC--ccchHHHHHHHHHHHHHHHHhhHHHHHHhcc
Confidence            59999999999999999999999999999999999999999986442  4566777888999999999999887654333


Q ss_pred             CCCCCcccccCC-cc------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhccc
Q psy6269          81 RHRDKRCGYNQN-RG------YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFN  153 (366)
Q Consensus        81 ~~~~~~C~~~~~-~~------~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (366)
                      ..+...|..... ..      +.....++.+++|+++|+++|.+|+++++++++                          
T Consensus       168 ~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~--------------------------  221 (323)
T PHA02834        168 TDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN--------------------------  221 (323)
T ss_pred             CCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------------------
Confidence            333456853221 11      112234678999999999999999998876421                          


Q ss_pred             ccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6269         154 YCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY  233 (366)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~  233 (366)
                                                                          ++++|.+||+++++++|++||+||.+..
T Consensus       222 ----------------------------------------------------~~~~k~~k~~~~vv~~F~icWlPy~i~~  249 (323)
T PHA02834        222 ----------------------------------------------------KNKTRSIKIILTVVTFTVVFWVPFNIVL  249 (323)
T ss_pred             ----------------------------------------------------cccceEEeehhHHHHHHHHHHhhHHHHH
Confidence                                                                1245778999999999999999999998


Q ss_pred             HHhhhCCCCCC-------Ch--HHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccc
Q psy6269         234 LANPFLPAGTI-------SP--LLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMP  304 (366)
Q Consensus       234 ~~~~~~~~~~~-------~~--~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (366)
                      ++..+.+.+..       ..  ....+..+++++||++||+                                       
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPi---------------------------------------  290 (323)
T PHA02834        250 FINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPI---------------------------------------  290 (323)
T ss_pred             HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHH---------------------------------------
Confidence            87554321110       11  1234667899999999999                                       


Q ss_pred             eEEEeeccccchhHHHHHHHHhhhhcccccc
Q psy6269         305 FAVALHITVPRSDFRLAFWRLTLKHCNKSRR  335 (366)
Q Consensus       305 ~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~  335 (366)
                       +|++    .+++||+++++++++.++...|
T Consensus       291 -IY~~----~~~~fR~~~~~~~~~~~~~~~~  316 (323)
T PHA02834        291 -IYAF----VGKNFKKVFKNMFCRTNNIFIR  316 (323)
T ss_pred             -HHHH----hcHHHHHHHHHHHHhhhhhhhc
Confidence             9999    9999999999998655544333

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.96  E-value=2.2e-29  Score=241.58  Aligned_cols=203  Identities=15%  Similarity=0.195  Sum_probs=157.6

Q ss_pred             cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccc----
Q psy6269           3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD----   78 (366)
Q Consensus         3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~----   78 (366)
                      ..|+.+|++..++...+..+|++++++||+|||++|++|.++. .. +++++..+++++|++++++++|+.+....    
T Consensus        99 ~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~-~~-~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~  176 (409)
T PHA03235         99 SGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRAR-SS-AYRSTYKILGLTWFASLICSGPAPVYTTVVAHD  176 (409)
T ss_pred             cCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhcc-Cc-ccchhhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            4457899999999999999999999999999999999998643 33 57778889999999999999997653211    


Q ss_pred             -cC--CCCCCcccccCCc--------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHh
Q psy6269          79 -KD--RHRDKRCGYNQNR--------GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIK  147 (366)
Q Consensus        79 -~~--~~~~~~C~~~~~~--------~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~  147 (366)
                       ..  ..+...|...+..        .|.....++.|++|+++|++||.+|+++++++.+                    
T Consensus       177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~--------------------  236 (409)
T PHA03235        177 DVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY--------------------  236 (409)
T ss_pred             ccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------------
Confidence             11  1234568543211        2344566677999999999999999999886532                    


Q ss_pred             hhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhch
Q psy6269         148 LRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL  227 (366)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwl  227 (366)
                                                                                ++++|..+++++++++|++||+
T Consensus       237 ----------------------------------------------------------~~~~k~~~~v~iivv~F~iCWl  258 (409)
T PHA03235        237 ----------------------------------------------------------KKRSRTLTFVCILLLSFLCLQT  258 (409)
T ss_pred             ----------------------------------------------------------hcchhhhhhHHHHHHHHHHHHh
Confidence                                                                      2245678899999999999999


Q ss_pred             hHHHHHHHhhhCCC----C-C---CChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhh
Q psy6269         228 PFFIVYLANPFLPA----G-T---ISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG  299 (366)
Q Consensus       228 P~~i~~~~~~~~~~----~-~---~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (366)
                      ||.++.++..+...    . .   .......+..+++++||++||+                                  
T Consensus       259 Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPi----------------------------------  304 (409)
T PHA03235        259 PFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPI----------------------------------  304 (409)
T ss_pred             HHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHH----------------------------------
Confidence            99998887543211    1 1   1234566778899999999999                                  


Q ss_pred             hhccceEEEeeccccchhHHHHHHHHhhhh
Q psy6269         300 IFVMPFAVALHITVPRSDFRLAFWRLTLKH  329 (366)
Q Consensus       300 ~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~  329 (366)
                            +|++    ++++||+++++.+++.
T Consensus       305 ------IY~~----~~~~FRk~~~~~l~~~  324 (409)
T PHA03235        305 ------LYAF----LGNDFLKRFRQCFRGE  324 (409)
T ss_pred             ------HHHH----hhHHHHHHHHHHHhhh
Confidence                  9999    9999999999988653

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.96  E-value=1.7e-28  Score=236.33  Aligned_cols=211  Identities=17%  Similarity=0.365  Sum_probs=164.4

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDK-   79 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~-   79 (366)
                      +|.+|+.+|++..++.....++|.+++++|++|||++|++|.+++... +++.+...++++|+++++.++|+.+..... 
T Consensus       160 ~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~-~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~  238 (417)
T PHA02638        160 QWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYR-TFNIGIILCIISWILSLIITSPAYFIFEASN  238 (417)
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccee-cHhhhHhhHhHHHHHHHHHHHHHHHHhhccc
Confidence            599999999999999999999999999999999999999999876554 677778888999999999999998865321 


Q ss_pred             ------CCC---CCCcccccCCc----------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q psy6269          80 ------DRH---RDKRCGYNQNR----------GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGR  140 (366)
Q Consensus        80 ------~~~---~~~~C~~~~~~----------~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~  140 (366)
                            ...   ....|......          .+.....++++++|+++|++||.+|++++++.++             
T Consensus       239 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------  305 (417)
T PHA02638        239 IIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------  305 (417)
T ss_pred             cccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Confidence                  111   13468543211          1222345677899999999999999998865321             


Q ss_pred             hhhHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHH
Q psy6269         141 HELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVG  220 (366)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~  220 (366)
                                                                                       ++++|.+|+++++++
T Consensus       306 -----------------------------------------------------------------~~k~k~~rli~~ivi  320 (417)
T PHA02638        306 -----------------------------------------------------------------SKKTKSIIIVSIIII  320 (417)
T ss_pred             -----------------------------------------------------------------cccchhhhhHHHHHH
Confidence                                                                             235677899999999


Q ss_pred             HHHHhchhHHHHHHHhhhCCC-----------CCC--ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhH
Q psy6269         221 GFIACWLPFFIVYLANPFLPA-----------GTI--SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCF  287 (366)
Q Consensus       221 ~f~vcwlP~~i~~~~~~~~~~-----------~~~--~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~  287 (366)
                      +|++||+|+.+..++..+...           +..  ......+...++++|||+||+                      
T Consensus       321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPi----------------------  378 (417)
T PHA02638        321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPL----------------------  378 (417)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHH----------------------
Confidence            999999999999888755311           001  123345677899999999999                      


Q ss_pred             HHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHhhhhccccc
Q psy6269         288 VMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSR  334 (366)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~  334 (366)
                                        +|++    .+++||+++++++++...+-+
T Consensus       379 ------------------IY~f----~~~~FR~~l~~~~~~~~~~~~  403 (417)
T PHA02638        379 ------------------IYTL----IGENFRMHLLMIFRNIFTNAK  403 (417)
T ss_pred             ------------------HHHH----hCHHHHHHHHHHHHHhccccc
Confidence                              9999    999999999999866554433

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.95  E-value=5.6e-27  Score=220.88  Aligned_cols=209  Identities=19%  Similarity=0.336  Sum_probs=165.0

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++......+|.+++++||+|||++|++|++|+... +.+++..+++++|+++++.++|++..+....
T Consensus       103 ~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~-~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~  181 (335)
T PHA03087        103 QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKIN-TVKYGYIVSLVIWIISIIETTPILFVYTTKK  181 (335)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-chhhhHHHHHHHHHHHHHHhccHhheeeeec
Confidence            589999999999999999999999999999999999999999987776 7788888999999999999999888775544


Q ss_pred             CCCCCcccccCC-c--ch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhccc
Q psy6269          81 RHRDKRCGYNQN-R--GY----VVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFN  153 (366)
Q Consensus        81 ~~~~~~C~~~~~-~--~~----~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (366)
                      ..+...|...+. .  .+    .....++.+++|.++++++|.+|.++++++++                          
T Consensus       182 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~--------------------------  235 (335)
T PHA03087        182 DHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK--------------------------  235 (335)
T ss_pred             cCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------------
Confidence            445566754332 1  11    12234567899999999999999988876421                          


Q ss_pred             ccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6269         154 YCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY  233 (366)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~  233 (366)
                                                                         .++++|++|++++++++|++||+|+.+..
T Consensus       236 ---------------------------------------------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~  264 (335)
T PHA03087        236 ---------------------------------------------------SKKNKKAIKLVLIIVILFVIFWLPFNVSV  264 (335)
T ss_pred             ---------------------------------------------------chhcchHHHhHHHHHHHHHHHHHHHHHHH
Confidence                                                               13467889999999999999999999977


Q ss_pred             HHhhhC----CCCCC----ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269         234 LANPFL----PAGTI----SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF  305 (366)
Q Consensus       234 ~~~~~~----~~~~~----~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (366)
                      ++....    .....    ......+..++..+|+++||+                                        
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPi----------------------------------------  304 (335)
T PHA03087        265 FVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPL----------------------------------------  304 (335)
T ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhh----------------------------------------
Confidence            665331    11111    122345667788999999999                                        


Q ss_pred             EEEeeccccchhHHHHHHHHhhhhcc
Q psy6269         306 AVALHITVPRSDFRLAFWRLTLKHCN  331 (366)
Q Consensus       306 iy~~~~~~~~~~fR~~~~~~~~~~~~  331 (366)
                      +|++    ++++||++++++++...+
T Consensus       305 IY~~----~~~~fr~~~~~~~~~~~~  326 (335)
T PHA03087        305 IYAF----VSEFFNKHKKKSLKLMFT  326 (335)
T ss_pred             HHHH----cCHHHHHHHHHHHHHHhh
Confidence            9999    999999999999854433

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.94  E-value=3.6e-26  Score=205.18  Aligned_cols=200  Identities=31%  Similarity=0.554  Sum_probs=169.2

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++...+..+|.++++++++|||++|++|++|++.. +++++..+++++|++++++++|+.++.....
T Consensus        49 ~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~-~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~  127 (257)
T PF00001_consen   49 DWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIR-TRRRARIIIILIWIISFLISLPPLFFSWVYF  127 (257)
T ss_dssp             SCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            599999999999999999999999999999999999999999998887 7888999999999999999999988753322


Q ss_pred             C-C-CCCcccccCCc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccc
Q psy6269          81 R-H-RDKRCGYNQNR----GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNY  154 (366)
Q Consensus        81 ~-~-~~~~C~~~~~~----~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (366)
                      . . ....|..+...    .+.....++.+++|+++++++|.+|++.+++++++..+...                    
T Consensus       128 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------  187 (257)
T PF00001_consen  128 VSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSS--------------------  187 (257)
T ss_dssp             ESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTS--------------------
T ss_pred             ccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc--------------------
Confidence            2 2 25789766544    36777888889999999999999999999998776443221                    


Q ss_pred             cceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6269         155 CKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYL  234 (366)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~  234 (366)
                                                                  .+.+.+.++|+|.++++++++++|++||+|+.+..+
T Consensus       188 --------------------------------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~  223 (257)
T PF00001_consen  188 --------------------------------------------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSL  223 (257)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cccccccccccccccccccccccccccCCceeHHHH
Confidence                                                        123355688999999999999999999999999999


Q ss_pred             HhhhCCCCC-CChHHHHHHHHHHHHhhhhccc
Q psy6269         235 ANPFLPAGT-ISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       235 ~~~~~~~~~-~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      +....+..+ .......+..++.++|+++||+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~  255 (257)
T PF00001_consen  224 LSVFSPSSSLISSILFYISYFLAFLNSCLNPI  255 (257)
T ss_dssp             HHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCccchhhHHHHHHHHHHHHHHHhhCcE
Confidence            988876543 4567788889999999999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=99.72  E-value=1.2e-18  Score=157.79  Aligned_cols=205  Identities=19%  Similarity=0.330  Sum_probs=158.3

Q ss_pred             ccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC
Q psy6269           2 WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR   81 (366)
Q Consensus         2 W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~   81 (366)
                      |.-| ..|++.+|+..+++-+|+++++++++||++.|++|++-.+.. ..+.+.++++..|+.+++.++.|+++...  +
T Consensus        98 W~tg-~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~-~lr~~~~ill~~wl~~~l~A~~Pl~g~s~--Y  173 (363)
T KOG2087|consen   98 WQTG-LGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKA-KLRPLVLILLLGWLFAFLMALLPLFGISS--Y  173 (363)
T ss_pred             hhhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcc-cccHHHHHHHHHHHHHHHHHhccccCCCC--C
Confidence            4444 789999999999999999999999999999999999866654 66668899999999999999999998322  2


Q ss_pred             CCCCcccccC----Ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccc
Q psy6269          82 HRDKRCGYNQ----NRG-YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCK  156 (366)
Q Consensus        82 ~~~~~C~~~~----~~~-~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (366)
                      .....|.+-+    ... |.....+....+.+++|.++|++++..+++.....                           
T Consensus       174 ~~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~---------------------------  226 (363)
T KOG2087|consen  174 GASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA---------------------------  226 (363)
T ss_pred             cccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc---------------------------
Confidence            2457785321    111 56667777788999999999999998876532210                           


Q ss_pred             eeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHh
Q psy6269         157 VIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLAN  236 (366)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~  236 (366)
                                                                      .....+.+|-+..+++.-.+||.|..++.+..
T Consensus       227 ------------------------------------------------~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~a  258 (363)
T KOG2087|consen  227 ------------------------------------------------TLISTSVAKRMAFLVFTDCICWCPIAFFKFSA  258 (363)
T ss_pred             ------------------------------------------------ccchhhhhhCeeEEEEccccccCchheeeeHH
Confidence                                                            01114677778888999999999999998887


Q ss_pred             hhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccch
Q psy6269         237 PFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRS  316 (366)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~  316 (366)
                      .+..+-........+..++.-+|||+||+                                        +|++    .++
T Consensus       259 l~~~~li~~~~sk~llv~flPlns~~NP~----------------------------------------LYa~----fT~  294 (363)
T KOG2087|consen  259 LIGVELISVSYSKWLLVFFLPLNSCLNPF----------------------------------------LYAF----FTP  294 (363)
T ss_pred             hcCCcccChhhceeEEEEEEEcccccCch----------------------------------------hHHH----cCH
Confidence            76543222223333445567899999999                                        9999    999


Q ss_pred             hHHHHHHHHhhhh
Q psy6269         317 DFRLAFWRLTLKH  329 (366)
Q Consensus       317 ~fR~~~~~~~~~~  329 (366)
                      .||+.++.+..+.
T Consensus       295 ~fk~d~~~l~~k~  307 (363)
T KOG2087|consen  295 VFKEDLFLLLSKV  307 (363)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998665

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.52  E-value=1.5e-13  Score=128.68  Aligned_cols=206  Identities=20%  Similarity=0.278  Sum_probs=158.1

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccC-ccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCC----CC
Q psy6269          10 DIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYS-RKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRH----RD   84 (366)
Q Consensus        10 ~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~-~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~----~~   84 (366)
                      .+...+...+..+|.|..++||+.|+++|.+|+..+ +.+.+.+.+..++.++++++.+..++..+........    ..
T Consensus        79 ~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~  158 (318)
T PF10324_consen   79 LIMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPP  158 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCC
Confidence            456678888999999999999999999999999754 2455677788888899999999999988766443221    24


Q ss_pred             Ccccc-c---CC-------------------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccch
Q psy6269          85 KRCGY-N---QN-------------------RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRH  141 (366)
Q Consensus        85 ~~C~~-~---~~-------------------~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~  141 (366)
                      ..|.. +   ..                   ..+.....++.-++|.++..++.+.+.+.+|+.++++++...       
T Consensus       159 ~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~-------  231 (318)
T PF10324_consen  159 PNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSS-------  231 (318)
T ss_pred             CceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccc-------
Confidence            56851 1   00                   012222344446899999999999999999988776554432       


Q ss_pred             hhHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHH
Q psy6269         142 ELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGG  221 (366)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~  221 (366)
                                                                                   +..+++.+.+++++++++.
T Consensus       232 -------------------------------------------------------------~~~~~~~~tt~li~~~ti~  250 (318)
T PF10324_consen  232 -------------------------------------------------------------SKSKKSDRTTKLILFMTIS  250 (318)
T ss_pred             -------------------------------------------------------------cccccccchHHHHHHHHHH
Confidence                                                                         1135788999999999999


Q ss_pred             HHHhchhHHHHHHHhhhCCCCC----CChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHH
Q psy6269         222 FIACWLPFFIVYLANPFLPAGT----ISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWL  297 (366)
Q Consensus       222 f~vcwlP~~i~~~~~~~~~~~~----~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (366)
                      |+++-+|+.+..++..+..+..    .......+...+..+|+..|++                                
T Consensus       251 f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~--------------------------------  298 (318)
T PF10324_consen  251 FLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFF--------------------------------  298 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHH--------------------------------
Confidence            9999999999999987643322    2234567778899999999999                                


Q ss_pred             hhhhccceEEEeeccccchhHHHHHHHHhh
Q psy6269         298 VGIFVMPFAVALHITVPRSDFRLAFWRLTL  327 (366)
Q Consensus       298 ~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~  327 (366)
                              +|++    ++.+||+++|++++
T Consensus       299 --------ic~~----mSsqYR~t~~~~f~  316 (318)
T PF10324_consen  299 --------ICCF----MSSQYRKTVKKLFG  316 (318)
T ss_pred             --------hhhh----hhHHHHHHHHHHhc
Confidence                    9999    99999999999994

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.42  E-value=6.7e-12  Score=113.64  Aligned_cols=197  Identities=20%  Similarity=0.260  Sum_probs=135.4

Q ss_pred             ccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy6269           6 WILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK   85 (366)
Q Consensus         6 ~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~   85 (366)
                      ...|-...+...++.......+.+|++||++||+.|++|+... +.+..........+.+....   ..++...+++...
T Consensus        58 ~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~~P~~Y~~~~-~~~y~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~  133 (257)
T PF10320_consen   58 RSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVCFPLRYRTIS-TRKYLIILLIFPVIYSIFFT---VIGFLYRDDETIV  133 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEeehhhhhhcc-cccchhhHhHHHHHHHHHHH---hheeEecCCcccc
Confidence            4578888899999999999999999999999999999998876 44433333333333333332   2333333444577


Q ss_pred             cccccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeeccc
Q psy6269          86 RCGYNQNRG--YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKT  163 (366)
Q Consensus        86 ~C~~~~~~~--~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (366)
                      .|.+.....  ..........++ .+++++.|...+..++++.++                                   
T Consensus       134 ~C~pp~a~~~~~~~~~~~~~~~i-nv~tvivY~i~~~~~~~k~~~-----------------------------------  177 (257)
T PF10320_consen  134 ICNPPLAFHGTASQIWSYSNIII-NVITVIVYIITIIIFKRKSRS-----------------------------------  177 (257)
T ss_pred             cCCCccccCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccc-----------------------------------
Confidence            897654222  222222222223 344567777777777665432                                   


Q ss_pred             cccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCCC-
Q psy6269         164 HLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAG-  242 (366)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~~-  242 (366)
                                                              ..+.++|..|.+.+.++.|+++|.=..+...+....+.+ 
T Consensus       178 ----------------------------------------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~  217 (257)
T PF10320_consen  178 ----------------------------------------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDG  217 (257)
T ss_pred             ----------------------------------------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcH
Confidence                                                    125688999999999999999999777776665544332 


Q ss_pred             CCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHH
Q psy6269         243 TISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAF  322 (366)
Q Consensus       243 ~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~  322 (366)
                      ...........++..++.+.|.+                                        +|.+    .++|+|+++
T Consensus       218 ~~~~~i~~~~~i~v~~~~s~~ff----------------------------------------V~~~----~S~EYR~af  253 (257)
T PF10320_consen  218 ETIAIIQMYAGIFVNISYSQNFF----------------------------------------VYYW----RSSEYRKAF  253 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhe----------------------------------------EEEE----cCHHHHHHH
Confidence            22233556667889999999999                                        9999    999999999


Q ss_pred             HHHh
Q psy6269         323 WRLT  326 (366)
Q Consensus       323 ~~~~  326 (366)
                      ++++
T Consensus       254 ~~~~  257 (257)
T PF10320_consen  254 RELF  257 (257)
T ss_pred             HHhC
Confidence            9874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.31  E-value=2.6e-11  Score=111.25  Aligned_cols=206  Identities=14%  Similarity=0.144  Sum_probs=135.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccC-ccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCC-
Q psy6269           8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPL-TYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK-   85 (366)
Q Consensus         8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl-~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~-   85 (366)
                      .-++.....+....+-....+++|++||.+|++|. ++.+.. ++.+...+++.-|+.++++++|.........+..+. 
T Consensus        74 ~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~-~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~  152 (283)
T PF10323_consen   74 YAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFW-QPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENM  152 (283)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhc-cccchhheeeeeehhhhhheeeeeccCceeeecccce
Confidence            34556666677778888899999999999999999 655555 777788899999999999999965543222111111 


Q ss_pred             cccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeecccc
Q psy6269          86 RCGYNQNR-GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTH  164 (366)
Q Consensus        86 ~C~~~~~~-~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (366)
                      .-..+... ............+-++..+++|+.++..+||+.+...+                                 
T Consensus       153 ~~~~d~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~---------------------------------  199 (283)
T PF10323_consen  153 SLFVDPEFIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSK---------------------------------  199 (283)
T ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---------------------------------
Confidence            11111110 11222334445566778899999999999987641111                                 


Q ss_pred             ccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCCCCC
Q psy6269         165 LVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTI  244 (366)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~~~~  244 (366)
                                                         ..++..++|.+.+.+.++.++++++.-.=+...... ....+.+.
T Consensus       200 -----------------------------------~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~-~~~~~~~~  243 (283)
T PF10323_consen  200 -----------------------------------SSSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYF-AQNFNTDP  243 (283)
T ss_pred             -----------------------------------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchH
Confidence                                               122456889999999988887766654444333332 22211111


Q ss_pred             ChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHH
Q psy6269         245 SPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWR  324 (366)
Q Consensus       245 ~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~  324 (366)
                      ......+-..+.-+.|.+||+                                        .-.+    .|+++|+++++
T Consensus       244 ~~~~r~~y~~~~~~~s~inP~----------------------------------------~LLi----~n~~lr~~~~~  279 (283)
T PF10323_consen  244 IFYLRAFYPILNGLLSFINPW----------------------------------------MLLI----FNKDLRKQVRR  279 (283)
T ss_pred             HHHHHHHHHHHHHHHHhhhhH----------------------------------------Hhhh----ccHHHHHHHHH
Confidence            112223556778888999999                                        8888    99999999999


Q ss_pred             Hhh
Q psy6269         325 LTL  327 (366)
Q Consensus       325 ~~~  327 (366)
                      .++
T Consensus       280 ~~~  282 (283)
T PF10323_consen  280 MLK  282 (283)
T ss_pred             HcC
Confidence            874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.14  E-value=3.1e-09  Score=97.31  Aligned_cols=194  Identities=14%  Similarity=0.133  Sum_probs=134.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhc--cccCCC-------
Q psy6269          12 WVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGW--YDKDRH-------   82 (366)
Q Consensus        12 ~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~--~~~~~~-------   82 (366)
                      .+.....+...+.++..+||++|++||..|.+|++.. +.+.+..+++++|++++....++....  ....++       
T Consensus        70 ~g~~~~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~f-s~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~  148 (274)
T PF10328_consen   70 FGFIGMFCYFIGPLSHLLIAINRFCAIFFPFKYKKIF-SFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY  148 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeeeHHHHHhHc-CccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec
Confidence            3777788888999999999999999999999998887 888899999999999997766555421  111111       


Q ss_pred             -CCCcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeec
Q psy6269          83 -RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIK  161 (366)
Q Consensus        83 -~~~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (366)
                       .++.|+..     ...........-.+++.++++.++.++++.+++.. ..                            
T Consensus       149 ~~~~~C~~~-----~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~-~~----------------------------  194 (274)
T PF10328_consen  149 PTDPPCGNY-----SWYFDFYKNFILVIISNILNIITFIKLRKFRKKIS-VS----------------------------  194 (274)
T ss_pred             CCCCccchh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc----------------------------
Confidence             12234322     11122222333366677788888888888776541 10                            


Q ss_pred             cccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCC
Q psy6269         162 KTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA  241 (366)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~  241 (366)
                                                          ....+++.++|.+..+....-...|++.++=+.+...+.   ++
T Consensus       195 ------------------------------------~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~~  235 (274)
T PF10328_consen  195 ------------------------------------SSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---SN  235 (274)
T ss_pred             ------------------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence                                                012235668899999999999999999888777764441   11


Q ss_pred             CCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHH
Q psy6269         242 GTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLA  321 (366)
Q Consensus       242 ~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~  321 (366)
                         ....+....+...+..+.|++                                        ++..    .|+++|+.
T Consensus       236 ---~~~~F~~~t~~w~~~h~~DG~----------------------------------------i~l~----fN~~~r~~  268 (274)
T PF10328_consen  236 ---RWWQFFCTTFSWVLVHALDGL----------------------------------------IMLI----FNSEIRRK  268 (274)
T ss_pred             ---cHHHHHHHHHHHHHHHHhcce----------------------------------------eEeE----EcHHHHHH
Confidence               233334444445666778999                                        9999    99999999


Q ss_pred             HHHHh
Q psy6269         322 FWRLT  326 (366)
Q Consensus       322 ~~~~~  326 (366)
                      +++..
T Consensus       269 ~~~~~  273 (274)
T PF10328_consen  269 IRKKK  273 (274)
T ss_pred             HHhcc
Confidence            98754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.84  E-value=2.5e-07  Score=85.73  Aligned_cols=211  Identities=11%  Similarity=0.069  Sum_probs=135.2

Q ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCcc-Cccccc--hhhHHHHHHHHHHHHHHHhhhhhhhccccCC
Q psy6269           5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY-SRKTRS--KKLALYMILCVWVLALVITCPPILGWYDKDR   81 (366)
Q Consensus         5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y-~~~~~t--~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~   81 (366)
                      .+..++...++..+....|.|..+++++--++.|+..-+. --+.+.  .+....++.++++++++..++....+.....
T Consensus        78 ~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~  157 (303)
T PF05296_consen   78 SENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHIN  157 (303)
T ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeec
Confidence            4557888888889999999999999999999999975431 112101  1122334566777777333333333321111


Q ss_pred             ----CCCCccc--ccCCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269          82 ----HRDKRCG--YNQNRG---YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF  152 (366)
Q Consensus        82 ----~~~~~C~--~~~~~~---~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                          .....+.  ......   +......+..++|+++++++...+...++||.+++++.......              
T Consensus       158 ~~~~~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~--------------  223 (303)
T PF05296_consen  158 NNNTNNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRD--------------  223 (303)
T ss_pred             cccccCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--------------
Confidence                1111111  111111   22333457889999999999999999999999988765442221              


Q ss_pred             cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269         153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV  232 (366)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~  232 (366)
                                                                        .+.+.+.|++|+++...+.|+++++-..+.
T Consensus       224 --------------------------------------------------ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~  253 (303)
T PF05296_consen  224 --------------------------------------------------PSTEAHIRAIKTMISFLILYIIYFLSLILS  253 (303)
T ss_pred             --------------------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                              234789999999988777777766554432


Q ss_pred             HHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeecc
Q psy6269         233 YLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT  312 (366)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~  312 (366)
                      ..-....    .......+...+..+.+...|+                                        +-.+   
T Consensus       254 ~~~~~~~----~~~~~~~~~~~i~~~yps~hs~----------------------------------------iLIl---  286 (303)
T PF05296_consen  254 FLSFFFP----ENSIWFWVCEIIIALYPSGHSI----------------------------------------ILIL---  286 (303)
T ss_pred             HHHHHhc----cccHHHHHHHHHHHHHHHHHHH----------------------------------------HHhc---
Confidence            2222121    2344556666777788888888                                        7777   


Q ss_pred             ccchhHHHHHHHHhh
Q psy6269         313 VPRSDFRLAFWRLTL  327 (366)
Q Consensus       313 ~~~~~fR~~~~~~~~  327 (366)
                       -|+++|++++++++
T Consensus       287 -gn~KLr~~~~~il~  300 (303)
T PF05296_consen  287 -GNPKLRQALLKILW  300 (303)
T ss_pred             -CchHHHHHHHHHHh
Confidence             99999999999983

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=98.63  E-value=3.9e-06  Score=77.32  Aligned_cols=80  Identities=23%  Similarity=0.319  Sum_probs=59.8

Q ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCC
Q psy6269           5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRD   84 (366)
Q Consensus         5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~   84 (366)
                      ++..|++++++.+++..++.+=.++||++=|+.+++....     .++.-..-.+.+|.++++.++.++..-  ..++..
T Consensus        71 ~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~~-----~~k~e~~Y~l~~wGiPli~a~i~l~~~--~~g~~G  143 (303)
T PF05462_consen   71 NSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYDE-----LEKLEKYYHLVCWGIPLIPAVIPLIGN--DYGPAG  143 (303)
T ss_pred             CCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCC
Confidence            4578999999999999999999999999999999876432     233344577889999999888766532  233334


Q ss_pred             CcccccC
Q psy6269          85 KRCGYNQ   91 (366)
Q Consensus        85 ~~C~~~~   91 (366)
                      ..|....
T Consensus       144 ~WCWI~~  150 (303)
T PF05462_consen  144 NWCWIKP  150 (303)
T ss_pred             CceeecC
Confidence            5786544

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.45  E-value=3.9e-06  Score=77.70  Aligned_cols=201  Identities=9%  Similarity=0.036  Sum_probs=124.9

Q ss_pred             cccchhHH------hHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHH--HHHHHHHHHHHhhhhhhhc
Q psy6269           5 GWILCDIW------VSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYM--ILCVWVLALVITCPPILGW   76 (366)
Q Consensus         5 g~~~C~~~------~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~--i~~~Wi~s~l~~~p~~~~~   76 (366)
                      |...|..-      +.+...+-.++......+++||..-+..|.+....+ .+++...+  +..+|.+-..+.-+|.+.-
T Consensus        96 G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F-~g~~~~~~l~~~~iY~~y~~~fT~pv~Fn  174 (313)
T PF10321_consen   96 GAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLF-EGKRTYIVLFLPIIYGFYFSFFTPPVLFN  174 (313)
T ss_pred             CccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhh-cCceEEeeehhHHHHHHHHHHHcCcccCC
Confidence            55566543      334455567788889999999999999987654444 33333333  3334433333333444321


Q ss_pred             cccCC--CCCCcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccc
Q psy6269          77 YDKDR--HRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNY  154 (366)
Q Consensus        77 ~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (366)
                      .....  .|+..=.....+.|.-..-.+.-++-.+++.++|+.+...++++.+...+                       
T Consensus       175 s~~~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s-----------------------  231 (313)
T PF10321_consen  175 SEYMSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS-----------------------  231 (313)
T ss_pred             CCcceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----------------------
Confidence            10000  00100011123334444444444555777888999999888887554311                       


Q ss_pred             cceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6269         155 CKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYL  234 (366)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~  234 (366)
                                                                     ....+.+++......++.+...+.++=|.....
T Consensus       232 -----------------------------------------------~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f  264 (313)
T PF10321_consen  232 -----------------------------------------------SQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQF  264 (313)
T ss_pred             -----------------------------------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence                                                           133466777777777777777776555544333


Q ss_pred             HhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeecccc
Q psy6269         235 ANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVP  314 (366)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~  314 (366)
                      +       ..+++...+.+..--+++..+|+                                        +|..    .
T Consensus       265 ~-------~~p~~~i~~~~~~Wql~~g~~~i----------------------------------------IYl~----l  293 (313)
T PF10321_consen  265 F-------PPPPWLIIIGQISWQLSHGCPPI----------------------------------------IYLT----L  293 (313)
T ss_pred             e-------cccHHHHHHHHHHHhccCCccce----------------------------------------EEEE----E
Confidence            2       23678888889999999999999                                        9999    9


Q ss_pred             chhHHHHHHHHhh
Q psy6269         315 RSDFRLAFWRLTL  327 (366)
Q Consensus       315 ~~~fR~~~~~~~~  327 (366)
                      |+..|++++|+++
T Consensus       294 NrtIR~~~~k~~~  306 (313)
T PF10321_consen  294 NRTIRNSVLKMLG  306 (313)
T ss_pred             CHHHHHHHHHHHc
Confidence            9999999999983

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.19  E-value=1.7e-06  Score=77.71  Aligned_cols=196  Identities=16%  Similarity=0.184  Sum_probs=125.1

Q ss_pred             cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CccCccccchhhHHHHHHHHHHHHHHHhhhhhhhc----
Q psy6269           3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQP--LTYSRKTRSKKLALYMILCVWVLALVITCPPILGW----   76 (366)
Q Consensus         3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~P--l~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~----   76 (366)
                      .++|..||+..|++-++-+.|+.+.+++++-.-+.|.-.  .+..-+....+.....+...|++-+++.....+..    
T Consensus        42 ~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~  121 (265)
T PF03402_consen   42 FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATP  121 (265)
T ss_pred             cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecC
Confidence            368999999999999999999999999999777766532  11111112334456667778998888765433321    


Q ss_pred             cccCCC---CCCcccccCCcchh--hh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhh
Q psy6269          77 YDKDRH---RDKRCGYNQNRGYV--VF--SGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLR  149 (366)
Q Consensus        77 ~~~~~~---~~~~C~~~~~~~~~--~~--~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (366)
                      +.....   ..+.|.........  .+  ...+.=++.+.+|+...+.+.-.+.||++|.+..+...             
T Consensus       122 n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~-------------  188 (265)
T PF03402_consen  122 NSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSS-------------  188 (265)
T ss_pred             ccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHHhhhhhheeeeeecccccccCcCCC-------------
Confidence            111111   23457543322221  11  11122244466777777777778888877665543321             


Q ss_pred             hcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhH
Q psy6269         150 VRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPF  229 (366)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~  229 (366)
                                                                         ...+...|.|+++++++.+..|++.+.--
T Consensus       189 ---------------------------------------------------~s~r~SpE~RAtktILlLVs~FV~fY~l~  217 (265)
T PF03402_consen  189 ---------------------------------------------------LSPRSSPETRATKTILLLVSTFVSFYGLS  217 (265)
T ss_pred             ---------------------------------------------------CCCCCChhHHHhCeEeeHHHHHHHHHhHH
Confidence                                                               12233679999999999999999999998


Q ss_pred             HHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269         230 FIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       230 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      .++........+   ..++.....++...-+.+-|+
T Consensus       218 si~~~~~~~~~~---~~~~~~~~~~ls~cfptisPf  250 (265)
T PF03402_consen  218 SILFIYLTSFKN---SPWLLNISVFLSSCFPTISPF  250 (265)
T ss_pred             HHHHHHHHHhcC---CcceeEHHHHHhHHhHhhChH
Confidence            887665444332   233445566777777888999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.16  E-value=0.00036  Score=64.47  Aligned_cols=183  Identities=14%  Similarity=0.211  Sum_probs=112.4

Q ss_pred             ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC--
Q psy6269           4 FGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR--   81 (366)
Q Consensus         4 ~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~--   81 (366)
                      +|+..|.....+...+...+.+.+.+--..||..+.++..      ++++....+++.++.++...+..++...+...  
T Consensus        77 ~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~------~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~  150 (292)
T PF10317_consen   77 FGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP------SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVE  150 (292)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHH
Confidence            5778999999999999999999999999999999998753      45556667777777777776655543311100  


Q ss_pred             ------CCCCcc---cc---cCCcchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHh
Q psy6269          82 ------HRDKRC---GY---NQNRGYVVFSGMGSFFIP----LLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAK  145 (366)
Q Consensus        82 ------~~~~~C---~~---~~~~~~~~~~~~~~~~lP----~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~  145 (366)
                            ..+..-   ..   .+..........+...++    .+++.++--+|.+.++++..+..               
T Consensus       151 ~~~~~~~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S---------------  215 (292)
T PF10317_consen  151 AELNQFHPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMS---------------  215 (292)
T ss_pred             HHHHHhCcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcC---------------
Confidence                  001111   11   111111111111111111    22223333334444433222211               


Q ss_pred             HhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHh
Q psy6269         146 IKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIAC  225 (366)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vc  225 (366)
                                                                              .+..+..++.+|.+.+=+..=+++
T Consensus       216 --------------------------------------------------------~~tk~~h~~lv~~Lt~Q~~lP~~~  239 (292)
T PF10317_consen  216 --------------------------------------------------------ERTKSMHRQLVKGLTIQALLPLFF  239 (292)
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHHHHHHhHHHH
Confidence                                                                    123467888899999999999999


Q ss_pred             chhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269         226 WLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       226 wlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      ..|-....++....+  ........+...+..+.+.+||+
T Consensus       240 ~~p~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~P~  277 (292)
T PF10317_consen  240 YIPGVIIYFLSQFTG--YEHPFLEYLIFMLASLPPLIDPL  277 (292)
T ss_pred             HHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhchH
Confidence            998888777765533  23566667777788999999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=98.11  E-value=0.00018  Score=66.64  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=106.7

Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCc
Q psy6269           7 ILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKR   86 (366)
Q Consensus         7 ~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~~   86 (366)
                      .+|........+++.++.+=+.+.|+|=|+.+.+--       .+.....--..+|.++.++..--......   ++...
T Consensus       114 afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a-------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~---Ps~~~  183 (405)
T PF02101_consen  114 AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA-------GRSTIWLYHMMAWGLPALLCAEGLAMLYY---PSISR  183 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC-------CCcchhHHHHHHHHHHHHHHHhccceeec---CCHHh
Confidence            689998888889999999999999999999885532       12223355677899888877654443322   23345


Q ss_pred             ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcccccceeeecccccc
Q psy6269          87 CGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLV  166 (366)
Q Consensus        87 C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (366)
                      |........   ---+...+|++++++.+=.++++.-+.....-+.....                              
T Consensus       184 Ce~~l~~al---phYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~------------------------------  230 (405)
T PF02101_consen  184 CESGLEHAL---PHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGI------------------------------  230 (405)
T ss_pred             hhhhhhhcc---hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccc------------------------------
Confidence            764433321   12223346666666555444443322222211111100                              


Q ss_pred             CCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhC---CCC-
Q psy6269         167 LPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFL---PAG-  242 (366)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~---~~~-  242 (366)
                                                       -..++++....+-+-.+.+.++|.+||+|..|.-++....   .+- 
T Consensus       231 ---------------------------------yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~  277 (405)
T PF02101_consen  231 ---------------------------------YTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDIN  277 (405)
T ss_pred             ---------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcccccc
Confidence                                             1112334555666677889999999999999977654321   110 


Q ss_pred             -CCChHHHHHHHHHHHHhhhhccc
Q psy6269         243 -TISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       243 -~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                       ............+-++-.++||.
T Consensus       278 ~~sl~~~~~a~~t~W~IMaIlNPl  301 (405)
T PF02101_consen  278 GGSLKQVRNAALTTWFIMAILNPL  301 (405)
T ss_pred             cccccchhhHHHHHHHHHHHHhHH
Confidence             11123334455556666777887

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.09  E-value=5e-05  Score=69.42  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC-CCCC
Q psy6269           7 ILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR-HRDK   85 (366)
Q Consensus         7 ~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-~~~~   85 (366)
                      ...++..++......+-....+.|++||+-+|..|.++.+.. ++. ...+++++.++++....+.+........ ++..
T Consensus        79 ~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W-~~~-~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~  156 (275)
T PF02118_consen   79 FFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFW-KRY-YWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGF  156 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH-Hhh-hhhheeeeeehhHHHHHHHHccccEEEEECCce
Confidence            456677778888889999999999999999999999988776 443 3345555555555443333332211111 1111


Q ss_pred             cccc--cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6269          86 RCGY--NQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRH  126 (366)
Q Consensus        86 ~C~~--~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~  126 (366)
                      .-..  ..............+++-.++.++++....+++++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~  199 (275)
T PF02118_consen  157 SYSYNDTVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS  199 (275)
T ss_pred             EEEEEeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1111  1111111222333344445556677777777777654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>KOG4219|consensus

Probab=97.83  E-value=1.2e-05  Score=74.80  Aligned_cols=44  Identities=41%  Similarity=0.688  Sum_probs=39.3

Q ss_pred             hccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269         262 LRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF  305 (366)
Q Consensus       262 vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (366)
                      +=-+||++++..++-+|++||.||+||.|||+||+..+++-.|+
T Consensus        48 vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f   91 (423)
T KOG4219|consen   48 VAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVF   91 (423)
T ss_pred             HHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence            33569999999999999999999999999999999999866554

>KOG4193|consensus

Probab=97.82  E-value=0.00038  Score=69.95  Aligned_cols=107  Identities=17%  Similarity=0.225  Sum_probs=72.8

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC--CCCCC
Q psy6269           8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD--RHRDK   85 (366)
Q Consensus         8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~--~~~~~   85 (366)
                      .|+..+++..++..+..+=+.++++.=|..++.-..   .. ..++........|...+++...........+  .....
T Consensus       385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~---~~-~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~  460 (610)
T KOG4193|consen  385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFR---SR-PRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPR  460 (610)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cc-cchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCC
Confidence            699999999999999999999999999996666443   22 3343444446899988887766555443221  22344


Q ss_pred             cccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269          86 RCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIA  123 (366)
Q Consensus        86 ~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr  123 (366)
                      .|..+......+.     |+.|+.+++.+++.++...-
T Consensus       461 ~CWl~~~~~~~~~-----F~GPv~~ii~~Ni~~Fv~t~  493 (610)
T KOG4193|consen  461 VCWLDTQNGFIWS-----FLGPVTLIILVNIVMFVVTL  493 (610)
T ss_pred             ceEEecCCceEEE-----EehHHHHHHHHHHHHHHHHH
Confidence            5876655554443     77888888777766655433

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.75  E-value=0.0033  Score=58.38  Aligned_cols=179  Identities=11%  Similarity=0.112  Sum_probs=111.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC------CCCC
Q psy6269          12 WVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR------HRDK   85 (366)
Q Consensus        12 ~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~------~~~~   85 (366)
                      ...+.......-.-.++.-=+-|+.+|.+..+.+. . ++..-........+..++..+......-..++      .+..
T Consensus        93 ~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l-~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP  170 (303)
T PF10327_consen   93 LMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-L-PKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYP  170 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-C-cHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Confidence            33334444444455566667889999999986433 2 56555555555555555544433332211110      1233


Q ss_pred             ccccc-----------CCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269          86 RCGYN-----------QNRGY--VVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF  152 (366)
Q Consensus        86 ~C~~~-----------~~~~~--~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      .|...           .+.++  .....+++.++-..++.+++..+++.+++.+++..+.                    
T Consensus       171 ~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~--------------------  230 (303)
T PF10327_consen  171 EYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQ--------------------  230 (303)
T ss_pred             chhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------------------
Confidence            44221           12222  2234444456667778889999998888887766554                    


Q ss_pred             cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269         153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV  232 (366)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~  232 (366)
                                                                         ..++++++.+.+++=.++-.+|-+|..+.
T Consensus       231 ---------------------------------------------------ty~kHk~av~SLi~Q~~~~~i~~~P~~~~  259 (303)
T PF10327_consen  231 ---------------------------------------------------TYQKHKEAVRSLIAQFATSSICILPPFIF  259 (303)
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                                               44889999999998888888888999888


Q ss_pred             HHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269         233 YLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      .......  ........+........+|.+|-+
T Consensus       260 ~~~~~~~--~~~~q~i~~~~~~~f~~HS~~n~i  290 (303)
T PF10327_consen  260 VVVVIFE--FEDAQVISEICLAIFSSHSSVNMI  290 (303)
T ss_pred             hhhheec--CCCcHHHHHHHHHHHHHhhHhhhe
Confidence            7765442  223455667777888899999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>KOG4220|consensus

Probab=97.74  E-value=4.7e-06  Score=77.47  Aligned_cols=48  Identities=40%  Similarity=0.632  Sum_probs=43.8

Q ss_pred             HhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269         258 LSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF  305 (366)
Q Consensus       258 ~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (366)
                      .-|.+.-+||+++++.+--+|+|+|+.||||+||||||+..+.+.+|+
T Consensus        39 ~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl   86 (503)
T KOG4220|consen   39 SLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNL   86 (503)
T ss_pred             HHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechH
Confidence            335666789999999999999999999999999999999999999995

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.70  E-value=0.0044  Score=58.09  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=47.3

Q ss_pred             ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHH
Q psy6269           4 FGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVI   68 (366)
Q Consensus         4 ~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~   68 (366)
                      .+...|-+.-....++...+..+..++.+||++|-.+.-+|.+.  ++.....+..+.|++++..
T Consensus        91 ~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~--~~~~Gi~l~~~qi~is~~~  153 (324)
T PF10292_consen   91 PSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS--GKWLGILLAFFQILISLLI  153 (324)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC--CccHHHHHHHHHHHHHHHH
Confidence            45567888888899999999999999999999999999888654  3443344444555555554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PHA03234 DNA packaging protein UL33; Provisional

Probab=97.69  E-value=2.3e-05  Score=73.89  Aligned_cols=69  Identities=14%  Similarity=0.208  Sum_probs=47.5

Q ss_pred             HHHHhhhhccccchhhhhhhh--hccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHh
Q psy6269         255 LGKLSGSLRLFGNTLIIISVL--TTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLT  326 (366)
Q Consensus       255 l~~~ns~vNP~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~  326 (366)
                      +..+-..+.-+||.+++.++.  +.+++||++|+|+.|||+||++++++..|.++.. .  .++.|.+.+.|+.
T Consensus        38 ~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~-~--~~w~fG~~lCk~~  108 (338)
T PHA03234         38 INGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR-E--ALFNFNQAFCQCV  108 (338)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--CCccCchhHHHHH
Confidence            333444566779999999665  5566799999999999999999976544433211 1  3456666666654

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.45  E-value=5.5e-05  Score=67.18  Aligned_cols=59  Identities=39%  Similarity=0.649  Sum_probs=45.2

Q ss_pred             cchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHH
Q psy6269         266 GNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRL  325 (366)
Q Consensus       266 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~  325 (366)
                      ||.++++++.++|++|++.|+|+.|||++|++.++...|........ ....+.+...++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~-~~~~~~~~~C~~   59 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF-DDWIFSSFLCRI   59 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-SSCTSHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc-cccccccccccc
Confidence            89999999999999999999999999999999999888876544111 234444444443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.36  E-value=0.0021  Score=55.78  Aligned_cols=121  Identities=17%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCc------cCc-c-ccchhhHHHHHHHHHHHHHHHhhhhhhh-
Q psy6269           5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLT------YSR-K-TRSKKLALYMILCVWVLALVITCPPILG-   75 (366)
Q Consensus         5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~------y~~-~-~~t~~~a~~~i~~~Wi~s~l~~~p~~~~-   75 (366)
                      ++..|.+++++.......+.+.+.+||+.=|+.|.+|-+      ..+ . ...+..+..+..+.|++...+   .+++ 
T Consensus        70 ~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~l---a~i~~  146 (201)
T PF11710_consen   70 PSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASL---AFIGL  146 (201)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHH---HHhcc
Confidence            457999999999999999999999999999999999921      100 0 001122222233444443333   2332 


Q ss_pred             ccccCCCCCCcccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6269          76 WYDKDRHRDKRCGYNQ-NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNN  128 (366)
Q Consensus        76 ~~~~~~~~~~~C~~~~-~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~  128 (366)
                      ......+....|-.+. ...+.....-+.-++-.+++++.|+.|+..+||+-++
T Consensus       147 ~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~  200 (201)
T PF11710_consen  147 GGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR  200 (201)
T ss_pred             ccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            1222334567886544 4445665555556677888899999999999988664

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF03125 Sre: C

Probab=97.31  E-value=0.0092  Score=56.94  Aligned_cols=36  Identities=28%  Similarity=0.213  Sum_probs=27.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCcc
Q psy6269          12 WVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRK   47 (366)
Q Consensus        12 ~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~   47 (366)
                      .+++..-..+...+.+.++++||.+|-..--.|.++
T Consensus       126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~  161 (365)
T PF03125_consen  126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK  161 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455555666789999999999999998888654

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.20  E-value=0.022  Score=52.74  Aligned_cols=65  Identities=18%  Similarity=0.250  Sum_probs=42.8

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhh
Q psy6269           8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILG   75 (366)
Q Consensus         8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~   75 (366)
                      -..++.++..........++..+=-+||.++...-+ +..  .++.-....+..++++.+...|....
T Consensus        84 ~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~--~~~~r~~~~~~~y~~~~~~~~~~~~~  148 (302)
T PF10318_consen   84 PTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSL--WKKIRIIFIIFNYIIAFLFFIPIYLS  148 (302)
T ss_pred             ChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-ccc--chhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            456666777777777888888889999999997654 111  22223344555566666676676663

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.16  E-value=0.00016  Score=67.19  Aligned_cols=187  Identities=16%  Similarity=0.118  Sum_probs=103.8

Q ss_pred             cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCC
Q psy6269           3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRH   82 (366)
Q Consensus         3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~   82 (366)
                      .++....+....+.-.+...+...++.==+.||.+|++|.+. +.. +.++....++..-+.++.......+.....++.
T Consensus        76 ~~~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f-~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~  153 (307)
T PF10326_consen   76 FLSKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYF-SGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEES  153 (307)
T ss_pred             cccchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccc-cccceeeeehhhhhhcccceEEEeehhccchhh
Confidence            344556666777777778888888888889999999999863 333 333222222222122222111111111100000


Q ss_pred             --------------CCCcc----------------cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy6269          83 --------------RDKRC----------------GYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEAL  132 (366)
Q Consensus        83 --------------~~~~C----------------~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~  132 (366)
                                    +....                ..++..............+.+.++++|-.++++++++..+..   
T Consensus       154 ~~~lr~~~~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~---  230 (307)
T PF10326_consen  154 DEYLREELLENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM---  230 (307)
T ss_pred             hhhhccccccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc---
Confidence                          00000                011111123334455567888899999999998884433221   


Q ss_pred             hccccccchhhHhHhhhhcccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHH
Q psy6269         133 NHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTA  212 (366)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  212 (366)
                                                                                          ..+..+-+++..
T Consensus       231 --------------------------------------------------------------------S~~~~~lq~QLf  242 (307)
T PF10326_consen  231 --------------------------------------------------------------------SSKTRKLQKQLF  242 (307)
T ss_pred             --------------------------------------------------------------------ChhhHHHHHHHH
Confidence                                                                                112336677777


Q ss_pred             HHHHHHH-HHHHHhchhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269         213 QTLSVVV-GGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       213 k~l~~v~-~~f~vcwlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      +.+.+=+ +-.++..+|..+......+.-+   ......+...+..+.+++||+
T Consensus       243 ~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~---~~~~~~~~~~~~~~yP~iDpl  293 (307)
T PF10326_consen  243 KALVIQTIIPFIFMYIPVFIVFILPFFGID---LGFFSNIISILISLYPAIDPL  293 (307)
T ss_pred             HHHHHHhhhhheeeecchhheeeeeccCCC---CCccccHhhhhEEEEeehhhh
Confidence            7777655 4466778899988877655322   123334556677778899999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.04  E-value=0.029  Score=52.66  Aligned_cols=42  Identities=26%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             cccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCcc
Q psy6269           3 EFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY   44 (366)
Q Consensus         3 ~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y   44 (366)
                      .+.+.-|.....+...+.....+.-+++.+||.+|-..|-.|
T Consensus        95 ~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~  136 (328)
T PF02117_consen   95 LFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY  136 (328)
T ss_pred             EeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence            455678888888888998899999999999999999888543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=97.03  E-value=0.00042  Score=67.29  Aligned_cols=49  Identities=29%  Similarity=0.651  Sum_probs=38.4

Q ss_pred             HHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         257 KLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       257 ~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      .+-.++.-+||.+++..+. .|++|+++|+|+.|||+||+++ ++.+|++.
T Consensus       106 ~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i  154 (417)
T PHA02638        106 IIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFII  154 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3344455679999986654 5889999999999999999988 45788754

>PHA02834 chemokine receptor-like protein; Provisional

Probab=96.96  E-value=0.00069  Score=63.54  Aligned_cols=50  Identities=26%  Similarity=0.529  Sum_probs=38.0

Q ss_pred             HHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceE
Q psy6269         255 LGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA  306 (366)
Q Consensus       255 l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (366)
                      +..+-..+.-+||.++++.+.++|++ +++|+|+.|||+||++. ++.+|+.
T Consensus        34 ~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~   83 (323)
T PHA02834         34 FYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFI   83 (323)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHH
Confidence            33333445567999999988875554 57899999999999987 6678864

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=96.93  E-value=0.12  Score=46.18  Aligned_cols=112  Identities=18%  Similarity=0.273  Sum_probs=69.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhc-----cccCCCCCC
Q psy6269          11 IWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGW-----YDKDRHRDK   85 (366)
Q Consensus        11 ~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~-----~~~~~~~~~   85 (366)
                      +..+...++.++-++.-.+||++|....-.- ++..++-.+....+=+..+|+++.....-....-     +....+...
T Consensus        92 ~~Sy~idf~h~siLfsNlviaIqR~fVFFfr-~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L  170 (305)
T PF04789_consen   92 FMSYLIDFCHYSILFSNLVIAIQRFFVFFFR-NLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQL  170 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeeeh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEE
Confidence            4456667888888999999999998877632 2122222344455566678888887765544432     111222345


Q ss_pred             ccccc-------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269          86 RCGYN-------QNRGYVVFSGMGSFFIPLLVVLYVYARISCVIAR  124 (366)
Q Consensus        86 ~C~~~-------~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~  124 (366)
                      .|...       .+.....+..++.+.+|+.+.+ +|+.+..++-.
T Consensus       171 ~C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~  215 (305)
T PF04789_consen  171 NCETCNSVVDISPPRGIQIIEIILQFGIPIFILV-IYIAIIIKIIK  215 (305)
T ss_pred             EcCCCCeeEeeCCCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Confidence            67543       2455677899999999987655 55555544443

>PHA03235 DNA packaging protein UL33; Provisional

Probab=96.87  E-value=0.00082  Score=65.07  Aligned_cols=52  Identities=23%  Similarity=0.406  Sum_probs=37.6

Q ss_pred             HHHHHhhhhccccchhhhhhhhhcccc--ccchhhHHHHHHHHHHHhhhhccceE
Q psy6269         254 WLGKLSGSLRLFGNTLIIISVLTTRRL--RTVTNCFVMSLAVADWLVGIFVMPFA  306 (366)
Q Consensus       254 ~l~~~ns~vNP~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (366)
                      .+..+-..+.-+||.++++++.+.+|.  ++.+|+|++|||+||++. ++.+|+.
T Consensus        37 ~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~   90 (409)
T PHA03235         37 FINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFI   90 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHH
Confidence            333333445566899999987654443  467889999999999987 5678864

>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.39  E-value=0.36  Score=44.20  Aligned_cols=90  Identities=11%  Similarity=0.088  Sum_probs=57.3

Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCcc-ccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC-CCC
Q psy6269           7 ILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRK-TRSKKLALYMILCVWVLALVITCPPILGWYDKDR-HRD   84 (366)
Q Consensus         7 ~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~-~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-~~~   84 (366)
                      ..|.+..-+.......-.....+|+-.=| .|..+...... -.++|+...-+..++.+.++.+....+......+ ...
T Consensus        57 ~wCDI~~kl~~~~~~g~~~a~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~  135 (283)
T PF02076_consen   57 VWCDISTKLIIGSSVGIPAASLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVED  135 (283)
T ss_pred             eeeeehHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecc
Confidence            78999988888877776655555555444 24444332111 1146777888888999999988877765433332 357


Q ss_pred             CcccccCCcchhh
Q psy6269          85 KRCGYNQNRGYVV   97 (366)
Q Consensus        85 ~~C~~~~~~~~~~   97 (366)
                      ..|......+...
T Consensus       136 ~GC~~~~~~s~~~  148 (283)
T PF02076_consen  136 VGCYPAIYPSWPT  148 (283)
T ss_pred             cCCccCCCCCHHH
Confidence            7897766555433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.35  E-value=0.0024  Score=57.85  Aligned_cols=48  Identities=31%  Similarity=0.539  Sum_probs=42.1

Q ss_pred             hccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEe
Q psy6269         262 LRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVAL  309 (366)
Q Consensus       262 vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~  309 (366)
                      +.-+||..++..+.++|+||||++++++.||++|++.+....|.....
T Consensus         3 ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~   50 (257)
T PF10320_consen    3 IGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL   50 (257)
T ss_pred             EEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345699999999999999999999999999999999988777766544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.23  E-value=0.26  Score=45.66  Aligned_cols=115  Identities=10%  Similarity=0.008  Sum_probs=73.6

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhcc---ccCCCCC-C
Q psy6269          10 DIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWY---DKDRHRD-K   85 (366)
Q Consensus        10 ~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~---~~~~~~~-~   85 (366)
                      ++..++.....+.+.+..++.++=|..-+..|.++.+.  .++.....+-.+.+.+++.++|.+...+   ..+.+-. +
T Consensus       104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i--~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fG  181 (307)
T PF10322_consen  104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI--CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFG  181 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH--HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCC
Confidence            56778889999999999999999999999999875433  4444455666677777777777655321   1111111 1


Q ss_pred             cc----cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6269          86 RC----GYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRH  126 (366)
Q Consensus        86 ~C----~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~  126 (366)
                      .=    ...+.+.......++...+-...++++++.++.++|+.+
T Consensus       182 AI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k  226 (307)
T PF10322_consen  182 AIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK  226 (307)
T ss_pred             EEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11    111222222333444444556777888898998998876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=96.17  E-value=0.027  Score=40.49  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhch-hHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269         204 SLKRESKTAQTLSVVVGGFIACWL-PFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       204 ~~~~~~k~~k~l~~v~~~f~vcwl-P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      +.++-+|.+|.+++=-++|+++|+ |+.+-.+-.....+.....+...+..++..+|..+|-+
T Consensus         3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~l   65 (76)
T PF11970_consen    3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCL   65 (76)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhh
Confidence            446677888999999999999999 87766555443333444567888888999999999999

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>KOG4564|consensus

Probab=96.01  E-value=0.085  Score=51.31  Aligned_cols=112  Identities=11%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCC
Q psy6269           5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRD   84 (366)
Q Consensus         5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~   84 (366)
                      +...|+....+...+..+..+=|.+=.+.=|-.++--..     ..++.-..-+.+.|.+.+++..+-.+....   ..+
T Consensus       225 ~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~-----ser~~~~~y~~iGWG~P~v~v~~Wai~r~~---~~d  296 (473)
T KOG4564|consen  225 NPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF-----SERRYFWLYLLIGWGVPAVFVVVWAIVRLY---LED  296 (473)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec-----cCccHHHHHHHHhhCCcHHHhhhHHhHhee---ecc
Confidence            457899999999999988888888878777777765432     134445667788999999987776665421   123


Q ss_pred             CcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269          85 KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIAR  124 (366)
Q Consensus        85 ~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~  124 (366)
                      ..|-..........+.-.-.++++++=.+..+.|.|.+-+
T Consensus       297 ~~CW~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~  336 (473)
T KOG4564|consen  297 TGCWDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVT  336 (473)
T ss_pred             ccccccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHH
Confidence            3686544432222222222223334444445555554433

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=95.72  E-value=0.01  Score=55.73  Aligned_cols=44  Identities=30%  Similarity=0.581  Sum_probs=35.8

Q ss_pred             hhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceE
Q psy6269         261 SLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA  306 (366)
Q Consensus       261 ~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (366)
                      .+.-+||.++++.+.+. ++|++.|+|+.|||++|++.++. .|..
T Consensus        52 ~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~   95 (335)
T PHA03087         52 FFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQ   95 (335)
T ss_pred             HHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHH
Confidence            34456899999888887 99999999999999999987664 4443

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.26  E-value=0.38  Score=42.19  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=37.2

Q ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCcc
Q psy6269           5 GWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRK   47 (366)
Q Consensus         5 g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~   47 (366)
                      +...||.......+..+.+++.-..+++|||+|.....+|.+.
T Consensus        81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~  123 (236)
T PF02175_consen   81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT  123 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence            4467888888899999999999999999999999998887543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.14  E-value=0.0056  Score=54.71  Aligned_cols=99  Identities=17%  Similarity=0.222  Sum_probs=0.0

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCcc
Q psy6269           8 LCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDKRC   87 (366)
Q Consensus         8 ~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~~C   87 (366)
                      .|...+++.+.+..++..=+.+.++|-|..+..+...     .+++.....+..|.+++++........  ....+...|
T Consensus        71 ~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~gwg~P~~iv~i~~~~~--~~~y~~~~C  143 (242)
T PF00002_consen   71 LCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNS-----SRRRFWWYYLIGWGIPALIVVISVAVN--SDGYGNDNC  143 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecc-----cchhhheeeeeeecCcceeeeeeeeec--ccccccccc
Confidence            4999999999999999999999999999999887431     233345566778998888776655443  222345678


Q ss_pred             cccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy6269          88 GYNQNRGYVVFSGMGSFFIPLLVVLYVYARI  118 (366)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I  118 (366)
                      -... .....    ..+..|..+++..+..+
T Consensus       144 Wl~~-~~~~~----~~f~~P~~~~l~in~vi  169 (242)
T PF00002_consen  144 WLSN-DWGFI----WAFVGPVLIILLINIVI  169 (242)
T ss_dssp             -------------------------------
T ss_pred             cccC-CCceE----EEEEecccceecccchh
Confidence            3322 22222    23456666555444433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.09  E-value=0.54  Score=43.26  Aligned_cols=61  Identities=8%  Similarity=-0.062  Sum_probs=42.6

Q ss_pred             hhhhhhHHHHHHHHHHHHH-HHHhchhHHHHHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccc
Q psy6269         203 SSLKRESKTAQTLSVVVGG-FIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLF  265 (366)
Q Consensus       203 ~~~~~~~k~~k~l~~v~~~-f~vcwlP~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~  265 (366)
                      +..+.+++..|.+.+-++. -++|..|-.+......+.  -+...+...........=+++||+
T Consensus       236 ~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~--i~~~~~~n~~~~iAls~FPf~DPl  297 (310)
T PF10319_consen  236 KTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG--IDLGRWNNYFSVIALSAFPFLDPL  297 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc--CChhHHHHHHHHHHHHHccccCch
Confidence            3457788888888877665 578899988887665553  334566666666655555788998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.02  E-value=0.72  Score=42.03  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCccCccc
Q psy6269          18 CLCTASILSLCAISIDRYLAVTQPLTYSRKT   48 (366)
Q Consensus        18 ~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~   48 (366)
                      ....+.......||+||.+|+..|..|+...
T Consensus        90 ~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r  120 (273)
T PF10316_consen   90 NLGSIRSILALIIALDRVFAVYFPIFYHNYR  120 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHccC
Confidence            3345677788999999999999999987664

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.46  E-value=0.03  Score=45.90  Aligned_cols=77  Identities=12%  Similarity=0.042  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCC-----CCCCcc
Q psy6269          13 VSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDR-----HRDKRC   87 (366)
Q Consensus        13 ~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~-----~~~~~C   87 (366)
                      ..+.++++....+...+|+++|-..|.+|.+...++ +.++.+.-+.+..++.+...+.|.+.......     .-...|
T Consensus        48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~F-s~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~C  126 (153)
T PF03383_consen   48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWF-SDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSAC  126 (153)
T ss_pred             eeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccc-ccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEcc
Confidence            456678888889999999999999999999854477 55556666666777777776767665533222     235678


Q ss_pred             ccc
Q psy6269          88 GYN   90 (366)
Q Consensus        88 ~~~   90 (366)
                      .++
T Consensus       127 ap~  129 (153)
T PF03383_consen  127 APD  129 (153)
T ss_pred             CCC
Confidence            764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]

Probab=92.62  E-value=9  Score=35.92  Aligned_cols=85  Identities=15%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             ccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCC
Q psy6269           4 FGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHR   83 (366)
Q Consensus         4 ~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~   83 (366)
                      .++..|-+...+.+.+..++..=-+.+++.-|++...-.. +..  -.+.....-+++|.++++..+.....-....++-
T Consensus        89 ~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~-~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~l  165 (328)
T PF01534_consen   89 LENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG-SEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDEL  165 (328)
T ss_pred             CCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC-cch--hhhhcchhhhHHhhhhHHHHHHHHHhcccccccc
Confidence            4568999999999999988888888889999999887544 222  2344666789999999998877666544444445


Q ss_pred             CCcccccC
Q psy6269          84 DKRCGYNQ   91 (366)
Q Consensus        84 ~~~C~~~~   91 (366)
                      .+.|....
T Consensus       166 tGiC~Vg~  173 (328)
T PF01534_consen  166 TGICFVGN  173 (328)
T ss_pred             cceeEEeC
Confidence            68896443

In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=92.23  E-value=0.71  Score=39.57  Aligned_cols=110  Identities=12%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             ccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccCCCCCC
Q psy6269           6 WILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK   85 (366)
Q Consensus         6 ~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~~~~~~   85 (366)
                      -++|-+.--+......+.....+++|+|||+.|+.-.|-+.+.        ++..--++++...+.-+...-.......+
T Consensus       114 I~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~~~f--------~v~v~~iit~~~~~~a~~~~~~G~~t~Nd  185 (226)
T PF06681_consen  114 IFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLSVWF--------VVVVHVIITFPFIFYAILNFPFGEPTPND  185 (226)
T ss_pred             EEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCCchH--------HHHHHHHHHHHHHHHHHHhcccCCCCcCC
Confidence            3578877776666666666666789999999999865533221        22222222222211111112222233467


Q ss_pred             cccc-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269          86 RCGY-NQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIAR  124 (366)
Q Consensus        86 ~C~~-~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~  124 (366)
                      .|.. ...+....+.....+.+++ +-++.+..|++.++|
T Consensus       186 iCa~L~fs~~~~~Vri~~tl~l~l-fAVl~N~~i~~fvkk  224 (226)
T PF06681_consen  186 ICAILRFSKSMELVRISYTLGLNL-FAVLLNFVILRFVKK  224 (226)
T ss_pred             eeeEEEEccchHHHHHHHHhHHHH-HHHHHHHhHheeeec
Confidence            8863 2333332222233444443 334566677777654

The function of this family is unknown.

>PF13853 7tm_4: Olfactory receptor

Probab=85.20  E-value=0.058  Score=44.15  Aligned_cols=87  Identities=18%  Similarity=0.206  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccc---cCCCCCC---------cccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6269          55 LYMILCVWVLALVITCPPILGWYD---KDRHRDK---------RCGYNQ-NRGYVVFSGMGSFFIPLLVVLYVYARISCV  121 (366)
Q Consensus        55 ~~~i~~~Wi~s~l~~~p~~~~~~~---~~~~~~~---------~C~~~~-~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~  121 (366)
                      ..+.++.|+.+++..++.......   -+..+..         .|.+.. ++.+......+..+.|+.++++.|++|.+.
T Consensus         4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a   83 (144)
T PF13853_consen    4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA   83 (144)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence            346677888888877776653211   1111222         343333 333444555666789999999999999999


Q ss_pred             HHHHhhhhhhhhccccccch
Q psy6269         122 IARRHNNLEALNHQHTLGRH  141 (366)
Q Consensus       122 lr~~~~~~~~~~~~~~~~~~  141 (366)
                      +.|......+.+...++++|
T Consensus        84 vlki~S~~~r~KAfsTC~sH  103 (144)
T PF13853_consen   84 VLKIPSAEGRSKAFSTCSSH  103 (144)
T ss_pred             hhcccccccccccccccccC
Confidence            99988777777787777776

>KOG2087|consensus

Probab=82.44  E-value=0.72  Score=43.03  Aligned_cols=67  Identities=22%  Similarity=0.329  Sum_probs=49.6

Q ss_pred             HHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHh
Q psy6269         254 WLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLT  326 (366)
Q Consensus       254 ~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~  326 (366)
                      ...++-+.+-++||++++......+.-.++.-++++|||+||++.++...  +.+.    ..-.+|.++-+..
T Consensus        29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~--~ia~----vD~~~~gey~~~a   95 (363)
T KOG2087|consen   29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLG--LIAS----VDAKTRGEYYKHA   95 (363)
T ss_pred             ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHH--HHHH----hhHHHHHHHHHHH
Confidence            33444556678999999999999999899999999999999999875322  2222    5666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	366
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-22
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		6e-22
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-21
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		1e-21
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		2e-21
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		7e-08
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		8e-18
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		9e-18
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		9e-18
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		1e-17
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-17
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		4e-04
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		1e-17
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		5e-04
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		6e-17
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		7e-16
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		2e-12
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		2e-12
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		3e-12
3vg9_A	326	Crystal Structure Of Human Adenosine A2a Receptor W		3e-10
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		9e-10
2ydo_A	325	Thermostabilised Human A2a Receptor With Adenosine		5e-09
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		6e-09
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-07
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-07
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		4e-07
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		2e-05
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		3e-05
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		3e-05
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		3e-05
2x72_A	349	Crystal Structure Of The Constitutively Active E113		3e-05
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		3e-05
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		3e-05
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		3e-05
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		6e-05
3vw7_A	484	Crystal Structure Of Human Protease-Activated Recep		2e-04
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		4e-04

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 55/240 (22%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 99  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 157
Query: 62  WVLALVITCPPI-LGWYDKDRHRDKRCGYNQ-------NRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY         C  N+       N+ Y + S + SF++PL+++++
Sbjct: 158 WIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVF 217
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSSI 172
           VY+R+                     + +L KI K   RF+             + + S 
Sbjct: 218 VYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLSQ 247
Query: 173 MERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232
           +E+D R             GLR + K        +E K  +TL +++G F  CWLPFFIV
Sbjct: 248 VEQDGRTG----------HGLRRSSKFCL-----KEHKALKTLGIIMGTFTLCWLPFFIV 292

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 55/240 (22%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 76  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 134
Query: 62  WVLALVITCPPI-LGWYDKDRHRDKRCGYNQ-------NRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY         C  N+       N+ Y + S + SF++PL+++++
Sbjct: 135 WIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVF 194
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSSI 172
           VY+R+                     + +L KI K   RF+             + + S 
Sbjct: 195 VYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLSQ 224
Query: 173 MERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232
           +E+D R             GLR + K        +E K  +TL +++G F  CWLPFFIV
Sbjct: 225 VEQDGRTG----------HGLRRSSKFCL-----KEHKALKTLGIIMGTFTLCWLPFFIV 269

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 57/242 (23%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL 
Sbjct: 247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILM 305
Query: 61  VWVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVL 112
           VW+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL++++
Sbjct: 306 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 365
Query: 113 YVYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSS 171
           +VY+R+                     + +L KI K   RF+             + + S
Sbjct: 366 FVYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLS 395
Query: 172 IMERDRRKSLASCSFSLQRSGLRLTDK-CTRVSSLKRESKTAQTLSVVVGGFIACWLPFF 230
            +E+D R             GLR + K C       +E K  +TL +++G F  CWLPFF
Sbjct: 396 QVEQDGRTG----------HGLRRSSKFCL------KEHKALKTLGIIMGTFTLCWLPFF 439
Query: 231 IV 232
           IV
Sbjct: 440 IV 441

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 113/240 (47%), Gaps = 55/240 (22%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 100 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 158
Query: 62  WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL+++++
Sbjct: 159 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 218
Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKI-KLRVRFNYCKVIIIKKTHLVLPSSSI 172
           VY+R+                     + +L KI K   RF+             + + S 
Sbjct: 219 VYSRV-----------------FQEAKRQLQKIDKSEGRFH-------------VQNLSQ 248
Query: 173 MERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV 232
           +E+D R             GLR + K        +E K  +TL +++G F  CWLPFFIV
Sbjct: 249 VEQDGRTG----------HGLRRSSKFCL-----KEHKALKTLGIIMGTFTLCWLPFFIV 293

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRS---KKLALYMI 58
           W F  I CD++V+LDV +CTASI +LCAISIDRY AV  P+ Y   T     +++AL MI
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVAL-MI 163
Query: 59  LCVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARI 118
             VWVLA  ++CP + G+   +   D       N  +V++S + SF++P  V + VYARI
Sbjct: 164 TAVWVLAFAVSCPLLFGF---NTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARI 220
Query: 119 SCVIA--RRHNNLEAL 132
             V+   RR N  E L
Sbjct: 221 YVVLKQRRRKNIFEML 236

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 207 RESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSL 262
           RE K  Q +++V+G FI CWLPFF+ ++ N       +SP L ++ TWLG ++ +L
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSAL 450

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 75  WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 133
Query: 62  WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL+++++
Sbjct: 134 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 193
Query: 114 VYARISCVIARRHNNLEALNHQHTL 138
           VY+R+     R+ N  E L     L
Sbjct: 194 VYSRVFQEAKRQLNIFEMLRIDEGL 218

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 164
Query: 62  WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL+++++
Sbjct: 165 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 224
Query: 114 VYARISCVIARRHNNLEAL 132
           VY+R+     R+ N  E L
Sbjct: 225 VYSRVFQEAKRQLNIFEML 243

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 165
Query: 62  WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL+++++
Sbjct: 166 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 225
Query: 114 VYARISCVIARRHNNLEAL 132
           VY+R+     R+ N  E L
Sbjct: 226 VYSRVFQEAKRQLNIFEML 244

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL V
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILMV 165
Query: 62  WVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL+++++
Sbjct: 166 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 225
Query: 114 VYARISCVIARRHNNLEAL 132
           VY+R+     R+ N  E L
Sbjct: 226 VYSRVFQEAKRQLNIFEML 244

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 11/127 (8%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY-SRKTRSKKLALYMIL 59
           +W +G  LC++W SLDV   TASI +LC I+IDRYLA+T P  Y S  TR++  A  +I 
Sbjct: 76  TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR--AKVIIC 133
Query: 60  CVWVLALVITCPPILG--WYDKDRHRDK------RCGYNQNRGYVVFSGMGSFFIPLLVV 111
            VW ++ +++  PI+   W D+D    K       C +  NR Y + S + SF+IPLL++
Sbjct: 134 TVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
Query: 112 LYVYARI 118
           ++V  R+
Sbjct: 194 IFVALRV 200

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 198 KCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGK 257
           K +RV  L RE K  +TL +++G F  CWLPFF+V + N F     +   L  +  WLG 
Sbjct: 218 KTSRVM-LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGY 275
Query: 258 LSGSL 262
            + ++
Sbjct: 276 ANSAM 280

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 11/127 (8%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY-SRKTRSKKLALYMIL 59
           +W +G  LC++W SLDV   TASI +LC I+IDRYLA+T P  Y S  TR++  A  +I 
Sbjct: 76  TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR--AKVIIC 133
Query: 60  CVWVLALVITCPPILG--WYDKDRHRDK------RCGYNQNRGYVVFSGMGSFFIPLLVV 111
            VW ++ +++  PI+   W D+D    K       C +  NR Y + S + SF+IPLL++
Sbjct: 134 TVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
Query: 112 LYVYARI 118
           ++V  R+
Sbjct: 194 IFVALRV 200

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 205 LKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLSGSL 262
           L RE K  +TL +++G F  CWLPFF+V + N F     +   L  +  WLG  + ++
Sbjct: 222 LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGYANSAM 278

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y +   +K  A  +IL 
Sbjct: 70  TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY-QSLLTKNKARVIILM 128
Query: 61  VWVLALVITCPPI-LGWYDKDRH-------RDKRCGYNQNRGYVVFSGMGSFFIPLLVVL 112
           VW+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL++++
Sbjct: 129 VWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV 188
Query: 113 YVYARI 118
           +VY+R+
Sbjct: 189 FVYSRV 194

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G ++CD+W++LD  +  AS+++L  IS DRY  VT+PLTY  K R+ K+A  MI   
Sbjct: 89  WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK-RTTKMAGMMIAAA 147
Query: 62  WVLALVITCPPILGW---YDKDRHRDKRC--GYNQNRGYVVFSGMGSFFIPLLVVLYVYA 116
           WVL+ ++  P IL W          D  C   +  N      + + +F++P++++  +Y 
Sbjct: 148 WVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYW 207
Query: 117 RISCVIARRHNNLEALNHQHTL 138
            IS     R N  E L     L
Sbjct: 208 HISRASKSRINIFEMLRIDEGL 229

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 114/278 (41%), Gaps = 50/278 (17%)
Query: 19  LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
           L  +SI SL AI+IDRY+A+  PL Y+      +    + +C WVL+  I   P+LGW +
Sbjct: 112 LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 170
Query: 79  -----KDRHRDKRCGYNQ---------NRGYVV-FSGMGSFFIPLLVVLYVYARISCVIA 123
                + ++  + CG  Q            Y+V F+      +PLL++L VY RI     
Sbjct: 171 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230
Query: 124 RR-----------HNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSI 172
           R+           ++NL+ +       + + A  K+R      +     K     P S  
Sbjct: 231 RQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPE 290
Query: 173 MER------------DRRKSLASCSFSLQRSGLRLTDKCTRV-----------SSLKRES 209
           M+             D    LA+     +        K TR            S+L++E 
Sbjct: 291 MKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEV 350
Query: 210 KTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
             A++L+++VG F  CWLP  I+     F P  + +PL
Sbjct: 351 HAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPL 388

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G + CD+W+S+D     AS+++L  IS DRY ++T+PLTY R  R+ K A  MI   
Sbjct: 78  WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTY-RAKRTTKRAGVMIGLA 136
Query: 62  WVLALVITCPPILGWYDKDRHRDKRCG-----YNQNRGYVVFSGMGSFFIPLLVVLYVYA 116
           WV++ V+  P IL W      R    G     +         + + +F++P+ ++  +Y 
Sbjct: 137 WVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYW 196
Query: 117 RI 118
           RI
Sbjct: 197 RI 198

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G  LC  W+S+D    TASI S+  + IDRY +V QPL Y  K R+K  A   IL  
Sbjct: 74  WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRY-LKYRTKTRASATILGA 132
Query: 62  WVLALVITCPPILGW----YDKDRHRDKRC--GYNQNRGYVVFSGMGSFFIPLLVVLYVY 115
           W L+ +    PILGW          R+ +C   +     + V + + +F++P L++L+ Y
Sbjct: 133 WFLSFLWVI-PILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFY 191
Query: 116 ARISCVIARRHNNLEAL 132
           A+I   + +  N  E L
Sbjct: 192 AKIYKAVRQHCNIFEML 208

>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 78/244 (31%)
Query: 19  LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
           L  +SI SL AI+IDRY+A+  PL Y+      +    + +C WVL+  I   P+LGW +
Sbjct: 87  LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 145
Query: 79  -----KDRHRDKRCGYNQ---------NRGYVV-FSGMGSFFIPLLVVLYVYARISCVIA 123
                + +   + CG  Q            Y+V F+      +PLL++L VY RI  + A
Sbjct: 146 CGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIF-LAA 204
Query: 124 RRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRKSLAS 183
           RR   L+ +  Q   G                                  ER R      
Sbjct: 205 RRQ--LKQMESQPLPG----------------------------------ERAR------ 222
Query: 184 CSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGT 243
                              S+L++E   A++L+++VG F  CWLP  I+     F P  +
Sbjct: 223 -------------------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS 263
Query: 244 ISPL 247
            +PL
Sbjct: 264 HAPL 267

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 52/231 (22%)
Query: 19  LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
           L  +SI SL AI+IDRY+A+  PL Y+      + A  + +C WVL+  I   P+LGW +
Sbjct: 87  LAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAIC-WVLSFAIGLTPMLGWNN 145
Query: 79  KDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTL 138
             + ++   G N ++G     G G              +++C+                 
Sbjct: 146 CGQPKE---GKNHSQG----CGEG--------------QVACLF---------------- 168
Query: 139 GRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRR--KSLASCSFSLQRSGLRLT 196
              ++  +   V FN+   +++    ++     I    RR  K + S     +R+     
Sbjct: 169 --EDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERAR---- 222
Query: 197 DKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
                 S+L++E   A++ +++ G F  CWLP  I+     F P  + +PL
Sbjct: 223 ------STLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPL 267

>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 52/231 (22%)
Query: 19  LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
           L  +SI SL AI+IDRY+A+  PL Y+      +    + +C WVL+  I   P+LGW +
Sbjct: 87  LTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 145
Query: 79  KDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTL 138
             + ++ +  ++Q  G                      +++C+                 
Sbjct: 146 CGQPKEGK-AHSQGCGE--------------------GQVACLF---------------- 168
Query: 139 GRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRR--KSLASCSFSLQRSGLRLT 196
              ++  +   V FN+   +++    ++     I    RR  K + S     +R+     
Sbjct: 169 --EDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERAR---- 222
Query: 197 DKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL 247
                 S+L++E   A++L+++VG F  CWLP  I+     F P  + +PL
Sbjct: 223 ------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPL 267

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 19  LCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYD 78
           L  +SI SL AI+IDRY+A+  PL Y+      +    + +C WVL+  I   P+LGW +
Sbjct: 102 LTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC-WVLSFAIGLTPMLGWNN 160
Query: 79  -----KDRHRDKRCGYNQ---------NRGYVV-FSGMGSFFIPLLVVLYVYARISCVIA 123
                + ++  + CG  Q            Y+V F+      +PLL++L VY RI     
Sbjct: 161 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 220
Query: 124 RRHNNLEALNHQHTL 138
           R+ N  E L     L
Sbjct: 221 RQLNIFEMLRIDEGL 235

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG+  C ++  +       SI+++  ISIDRY  + +P+  S+K  S + A  MI+ V
Sbjct: 100 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM-SHRRAFIMIIFV 158
Query: 62  WVLALVITCPPILGWYDKDRHRDK-RCGYN------QNRGYVVFSGMGSFFIPLLVVLYV 114
           W+ +++    PI GW           C ++        R  ++   +  FF P+L++ + 
Sbjct: 159 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 218
Query: 115 YARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVL 167
           Y  I   ++     + A+  +        A+          K+ I+  +  +L
Sbjct: 219 YFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLL 271

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG+  C ++  +       SI+++  ISIDRY  + +P+  S+K  S + A  MI+ V
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM-SHRRAFIMIIFV 159
Query: 62  WVLALVITCPPILGWYDKDRHRDK-RCGYN------QNRGYVVFSGMGSFFIPLLVVLYV 114
           W+ +++    PI GW           C ++        R  ++   +  FF P+L++ + 
Sbjct: 160 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 219
Query: 115 YARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVL 167
           Y  I   ++     + A+  +        A+          K+ I+  +  +L
Sbjct: 220 YFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLL 272

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W FG ILC I +S+D      SI +LC +S+DRY+AV  P+  +   R+ + A  + +C
Sbjct: 81  TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK-ALDFRTPRNAKIVNVC 139
Query: 61  VWVLALVITCPPILGWYDKDRHRDKRC 87
            W+L+  I  P +     K R     C
Sbjct: 140 NWILSSAIGLPVMFMATTKYRQGSIDC 166

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
            W +G   C       +    ASI S+ A++ DRY+A+  PL    + R    A  +++C
Sbjct: 97  EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL----QPRLSATATKVVIC 152
Query: 61  V-WVLALVITCPPILGWYDKDRHRDKR--CGYN--------QNRGYVVFSGMGSFFIPLL 109
           V WVLAL++  P   G+Y        R  C             + Y +   +  +F+PLL
Sbjct: 153 VIWVLALLLAFPQ--GYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLL 210
Query: 110 VVLYVYARIS 119
           V+ Y Y  + 
Sbjct: 211 VIGYAYTVVG 220

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26  SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
           SL  ++I+RY+ V +P++  R   +   A+  +   WV+AL    PP++GW    R+  +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86  ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
                CG +         N  +V++  +  F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26  SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
           SL  ++I+RY+ V +P++  R   +   A+  +   WV+AL    PP++GW    R+  +
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 181
Query: 86  ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
                CG +         N  +V++  +  F IPL+V+ + Y ++
Sbjct: 182 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W FG +LC   +S+D      SI +L  +S+DRY+AV  P+  +   R+   A  + +C
Sbjct: 78  TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPAKAKLINIC 136
Query: 61  VWVLALVITCP 71
           +WVLA  +  P
Sbjct: 137 IWVLASGVGVP 147

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26  SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
           SL  ++I+RY+ V +P++  R   +   A+  +   WV+AL    PP++GW    R+  +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86  ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
                CG +         N  +V++  +  F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26  SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
           SL  ++I+RY+ V +P++  R   +   A+  +   WV+AL    PP++GW    R+  +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86  ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
                CG +         N  +V++  +  F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26  SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
           SL  ++I+RY+ V +P++  R   +   A+  +   WV+AL    PP++GW    R+  +
Sbjct: 127 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 181
Query: 86  ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
                CG +         N  +V++  +  F IPL+V+ + Y ++
Sbjct: 182 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 26  SLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKDRHRDK 85
           SL  ++I+RY+ V +P++  R   +   A+  +   WV+AL    PP++GW    R+  +
Sbjct: 128 SLVVLAIERYVVVCKPMSNFRFGENH--AIMGVAFTWVMALACAAPPLVGW---SRYIPE 182
Query: 86  ----RCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARI 118
                CG +         N  +V++  +  F IPL+V+ + Y ++
Sbjct: 183 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           SW FG +LC I +S+D      SI +L  +S+DRY+AV  P+  +   R+   A  + +C
Sbjct: 86  SWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPLKAKIINIC 144
Query: 61  VWVLA 65
           +W+L+
Sbjct: 145 IWLLS 149

>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W+FG  LC    +   C   ASIL +  ISIDR+LAV  P+  S   R+   A +  L +
Sbjct: 86  WQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQ-SLSWRTLGRASFTCLAI 144
Query: 62  WVLALVITCPPIL 74
           W LA+    P +L
Sbjct: 145 WALAIAGVVPLLL 157

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPL-TYSRKTRSKKLALYMILC 60
           W FG  LC   +++D      S  +L A+S+DRY+A+  P+     +T SK  A+ +   
Sbjct: 190 WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNV--A 247
Query: 61  VWVLALVITCPPILGWYDKDRHRDKRC----GYNQNRGYVVFS---GMGSFFIPLLVVLY 113
           +W LA V+  P  +    +    +  C       Q+    VF+    + SF +P+LV+  
Sbjct: 248 IWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISV 307
Query: 114 VYA 116
            Y+
Sbjct: 308 CYS 310

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	1e-56
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	8e-17
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-55
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	7e-17
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-51
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	3e-16
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	3e-09
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-49
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	5e-17
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	4e-10
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	3e-49
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-16
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	4e-08
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	8e-47
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	9e-17
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	6e-10
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-45
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	9e-17
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-09
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-42
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	1e-16
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-08
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	6e-32
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	9e-13
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	9e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-26
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-07
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-21
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	6e-06
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	3e-21
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-08
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	6e-04
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	3e-19
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-10
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	2e-18
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	4e-07
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	4e-18
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	5e-05
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	1e-08

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score =  190 bits (483), Expect = 1e-56
 Identities = 67/305 (21%), Positives = 104/305 (34%), Gaps = 51/305 (16%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           +      C       + L  +SI SL AI+IDRY+A+  PL Y+    +   A  +I   
Sbjct: 95  FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGL-VTGTRAKGIIAIC 153

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQ---------------NRGYVVFSGMGSFFI 106
           WVL+  I   P+LGW +  + ++ +                        V F+      +
Sbjct: 154 WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV 213

Query: 107 PLLVVLYVYARISCVIARRHNNLEALNHQHTLGR-----------HELAKIKLRVRFNYC 155
           PLL++L VY RI     R+  +LE                      + A  K+R      
Sbjct: 214 PLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 273

Query: 156 KVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVS------------ 203
           +     K     P S  M+  R               L    K                 
Sbjct: 274 QKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA 333

Query: 204 -----------SLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL-LSNS 251
                      +L++E   A++L+++VG F  CWLP  I+     F P  + +PL L   
Sbjct: 334 YIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYL 393

Query: 252 LTWLG 256
              L 
Sbjct: 394 AIVLS 398

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 80.5 bits (198), Expect = 8e-17
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVAL 309
           + GN L+  +V     L+ VTN FV+SLA AD  VG+  +PFA+ +
Sbjct: 46  ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI 91

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score =  188 bits (480), Expect = 1e-55
 Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 54/263 (20%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y     +K  A  +IL V
Sbjct: 248 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSL-LTKNKARVIILMV 306

Query: 62  WVLALVITCPPI-LGWYDKDRHRDKR-------CGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY                C +  N+ Y + S + SF++PL+++++
Sbjct: 307 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 366

Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
           VY+R+    A+R                   +   +    +    + +            
Sbjct: 367 VYSRVFQE-AKRQ-----------------LQKIDKSEGRFHVQNLSQVEQDGRTGH--- 405

Query: 174 ERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY 233
                                            +E K  +TL +++G F  CWLPFFIV 
Sbjct: 406 -----------------------GLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVN 442

Query: 234 LANPFLPAGTISPLLSNSLTWLG 256
           + +       I   +   L W+G
Sbjct: 443 IVHVIQDN-LIRKEVYILLNWIG 464

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 80.7 bits (199), Expect = 7e-17
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           +FGN L+I ++    RL+TVTN F+ SLA AD ++G+ V+PF  A  +T
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  177 bits (450), Expect = 1e-51
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 6/142 (4%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G ++CD+W++LD  +  AS+++L  IS DRY  VT+PLTY  K R+ K+A  MI   
Sbjct: 89  WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK-RTTKMAGMMIAAA 147

Query: 62  WVLALVITCPPILGWYDKDRHRDKR-----CGYNQNRGYVVFSGMGSFFIPLLVVLYVYA 116
           WVL+ ++  P IL W      R          +  N      + + +F++P++++  +Y 
Sbjct: 148 WVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYW 207

Query: 117 RISCVIARRHNNLEALNHQHTL 138
            IS     R N  E L     L
Sbjct: 208 HISRASKSRINIFEMLRIDEGL 229

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 79.0 bits (194), Expect = 3e-16
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           + GN L+++S+   R L+TV N F+ SLA AD ++G+F M       + 
Sbjct: 38  IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 168 PSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227
             +++     R    + + + +      T          RE K  +T+  ++  FI  W 
Sbjct: 343 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWA 402

Query: 228 PFFIVYLANPFLPAGTISPLLSNSLTWLG 256
           P+ ++ L N F     I   +     WL 
Sbjct: 403 PYNVMVLINTFCAP-CIPNTVWTIGYWLC 430

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score =  172 bits (438), Expect = 1e-49
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG   C+ W S+DV   TASI +LC I++DRY A+T P  Y     +K  A  +IL V
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSL-LTKNKARVIILMV 164

Query: 62  WVLALVITCPPI-LGWYDKDRHR-------DKRCGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W+++ + +  PI + WY             +  C +  N+ Y + S + SF++PL+++++
Sbjct: 165 WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVF 224

Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
           VY+R+     R+ N  E L     L        +         +  + K+  +  + S +
Sbjct: 225 VYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL--LTKSPSLNAAKSEL 282

Query: 174 ERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVV 218
           ++   ++        +   L   D    V  + R +K       +
Sbjct: 283 DKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 327

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 81.3 bits (200), Expect = 5e-17
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           +FGN L+I ++    RL+TVTN F+ SLA AD ++G+ V+PF  A  + 
Sbjct: 55  VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM 103

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 60.1 bits (145), Expect = 4e-10
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 168 PSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227
             +++     R    + + + +      T          +E K  +TL +++G F  CWL
Sbjct: 363 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWL 422

Query: 228 PFFIVYLANPFLPAGTISPLLSNSLTWLG 256
           PFFIV + +       I   +   L W+G
Sbjct: 423 PFFIVNIVHVIQDN-LIRKEVYILLNWIG 450

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score =  170 bits (432), Expect = 3e-49
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W  G  LC  W+S+D    TASI S+  + IDRY +V QPL Y +  R+K  A   IL  
Sbjct: 74  WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKY-RTKTRASATILGA 132

Query: 62  WVLALVITCPPILGWYDKDRHRDKR------CGYNQNRGYVVFSGMGSFFIPLLVVLYVY 115
           W L+ +    PILGW    +    R        +     + V + + +F++P L++L+ Y
Sbjct: 133 WFLSFLW-VIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFY 191

Query: 116 ARISCVIARRHNNLEALNHQH 136
           A+I   + +  N  E L    
Sbjct: 192 AKIYKAVRQHCNIFEMLRIDE 212

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 79.4 bits (195), Expect = 2e-16
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFW 323
           +  N L++ +V + R+L TV N +++SL+VAD +VG  VMP  +   +         + W
Sbjct: 23  VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM--------SKW 74

Query: 324 RLTLKHCN 331
            L    C 
Sbjct: 75  SLGRPLCL 82

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 183 SCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAG 242
           + + + +      T        + RE K A+ L  ++  FI CW+P+FI ++   F    
Sbjct: 343 TPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKN- 401

Query: 243 TISPLLSNSLTWLG 256
             +  L     WLG
Sbjct: 402 CCNEHLHMFTIWLG 415

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score =  164 bits (417), Expect = 8e-47
 Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 5/211 (2%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKT--RSKKLALYMIL 59
           W F  I CD++V+LDV +CTASI +LCAISIDRY AV  P+ Y   T   S +    MI 
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMIT 164

Query: 60  CVWVLALVITCPPILGWYDKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
            VWVLA  ++CP + G+          C  + N  +V++S + SF++P  V + VYARI 
Sbjct: 165 AVWVLAFAVSCPLLFGFNTTG--DPTVCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIY 221

Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
            V+ +R         +   G            +      ++ K+  +  + S +++   +
Sbjct: 222 VVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR 281

Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESK 210
           +        +   L   D    V  + R +K
Sbjct: 282 NTNGVITKDEAEKLFNQDVDAAVRGILRNAK 312

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 80.6 bits (198), Expect = 9e-17
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFW 323
           +FGN L+ ++VL  R L+T TN  V+SLAVAD LV   VMP+ V L +T          W
Sbjct: 53  VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT-------GGVW 105

Query: 324 RLTLKHCN 331
             +   C+
Sbjct: 106 NFSRICCD 113

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 59.4 bits (143), Expect = 6e-10
 Identities = 24/89 (26%), Positives = 41/89 (46%)

Query: 168 PSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWL 227
             +++     R    + + + +      T          RE K  Q +++V+G FI CWL
Sbjct: 356 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWL 415

Query: 228 PFFIVYLANPFLPAGTISPLLSNSLTWLG 256
           PFF+ ++ N       +SP L ++ TWLG
Sbjct: 416 PFFLTHVLNTHCQTCHVSPELYSATTWLG 444

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score =  161 bits (408), Expect = 2e-45
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 18/230 (7%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           +      C       + L  +SI SL AI+IDRY+A+  PL Y+    +   A  +I   
Sbjct: 85  FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGL-VTGTRAKGIIAIC 143

Query: 62  WVLALVITCPPILGWYDKDRHRDKRCGYNQNRG---------------YVVFSGMGSFFI 106
           WVL+  I   P+LGW +  + ++ +                        V F+      +
Sbjct: 144 WVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV 203

Query: 107 PLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLV 166
           PLL++L VY RI     R+ N  E L     L        +         +  + K+  +
Sbjct: 204 PLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL--LTKSPSL 261

Query: 167 LPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLS 216
             + S +++   ++        +   L   D    V  + R +K      
Sbjct: 262 NAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYD 311

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 80.2 bits (197), Expect = 9e-17
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVP 314
           + GN L+  +V     L+ VTN FV+SLA AD  VG+  +PFA+ +     
Sbjct: 36  ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFC 86

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 169 SSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLP 228
           ++  + + R  +          +  R        S+L++E   A++L+++VG F  CWLP
Sbjct: 351 AAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLP 410

Query: 229 FFIVYLANPFLPAGT-ISPLLSNSLTWLG 256
             I+     F P  +     L      L 
Sbjct: 411 LHIINCFTFFCPDCSHAPLWLMYLAIVLS 439

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score =  149 bits (377), Expect = 2e-42
 Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 9/143 (6%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W +G  LC++W SLDV   TASI +LC I+IDRYLA+T P  Y     ++  A  +I  V
Sbjct: 77  WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSL-MTRARAKVIICTV 135

Query: 62  WVLALVITCPPI-LGWYDKDRHRDKR-------CGYNQNRGYVVFSGMGSFFIPLLVVLY 113
           W ++ +++  PI + W+  +  +  +       C +  NR Y + S + SF+IPLL++++
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIF 195

Query: 114 VYARISCVIARRHNNLEALNHQH 136
           V  R+      +   ++  + + 
Sbjct: 196 VALRVYREAKEQIRKIDRASKRK 218

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 22/49 (44%), Positives = 35/49 (71%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           + GN L+I ++ +T+RL+T+TN F+ SLA AD +VG+ V+PF   L + 
Sbjct: 26  VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 199 CTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLG 256
            T    L RE K  +TL +++G F  CWLPFF+V + N F     +   L  +  WLG
Sbjct: 218 KTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLG 274

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score =  124 bits (313), Expect = 6e-32
 Identities = 34/217 (15%), Positives = 80/217 (36%), Gaps = 7/217 (3%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +++       +         +AS+ SL AI+I+RY+ + +   ++     +     +I  
Sbjct: 127 TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFR--LFLLISA 184

Query: 61  VWVLALVITCPPILGWYDKDRHRD-KRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARIS 119
            WV++L++   PI+GW                ++ Y++F     F + LL ++ +Y RI 
Sbjct: 185 CWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTT-VFTLLLLSIVILYCRIY 243

Query: 120 CVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIMERDRRK 179
            ++  R+        +   G            +      ++ K+  +  + S +++   +
Sbjct: 244 SLVRTRNIF---EMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGR 300

Query: 180 SLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLS 216
           +        +   L   D    V  + R +K      
Sbjct: 301 NTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYD 337

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 68.4 bits (166), Expect = 9e-13
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFW 323
           +  N  +++++  T++       F+ +LA++D L G+      +    T  +      F 
Sbjct: 78  ILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFL 137

Query: 324 RLTL 327
           R   
Sbjct: 138 REGS 141

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 49.5 bits (117), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 204 SLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPL-LSNSLTWLG 256
                    +T+ +V+  FIACW P FI+ L +      T   L  +     L 
Sbjct: 412 RSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLA 465

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score =  109 bits (273), Expect = 1e-26
 Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 67/266 (25%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           W FG+  C ++  +       SI+++  ISIDRY  + +P+  S+K  S + A  MI+ V
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK-MSHRRAFIMIIFV 159

Query: 62  WVLALVITCPPILGW--YDKDRHRDKRCGYN------QNRGYVVFSGMGSFFIPLLVVLY 113
           W+ +++    PI GW  Y  +      C ++        R  ++   +  FF P+L++ +
Sbjct: 160 WLWSVLWAIGPIFGWGAYTLEGVL-CNCSFDYISRDSTTRSNILCMFILGFFGPILIIFF 218

Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
            Y  I   +             H      +AK                            
Sbjct: 219 CYFNIVMSV-----------SNHEKEMAAMAK---------------------------- 239

Query: 174 ERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY 233
            R   K L                     +    E + A+   V+V  F+  W P+ +V 
Sbjct: 240 -RLNAKELRKAQ-----------------AGANAEMRLAKISIVIVSQFLLSWSPYAVVA 281

Query: 234 LANPFLPAGTISPLLSNSLTWLGKLS 259
           L   F P   ++P  +       K S
Sbjct: 282 LLAQFGPLEWVTPYAAQLPVMFAKAS 307

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 260 GSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIF-VMPFAVA 308
           G +   GN ++I     T+ L+T  N F+++LA +D+   +    P    
Sbjct: 45  GIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI 94

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 95.1 bits (236), Expect = 1e-21
 Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 16/192 (8%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W FG ILC I +S+D      SI +LC +S+DRY+AV  P+  +   R+ + A  + +C
Sbjct: 81  TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK-ALDFRTPRNAKIVNVC 139

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRCGYN-------QNRGYVVFSGMGSFFIPLLVVLY 113
            W+L+  I  P +     K R     C                +   + +F +P+L++  
Sbjct: 140 NWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITV 199

Query: 114 VYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFNYCKVIIIKKTHLVLPSSSIM 173
            Y  +   +    N  E               ++L++  N      I   HL+  S S+ 
Sbjct: 200 CYGLMILRLKSVRNIFEM--------LRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLN 251

Query: 174 ERDRRKSLASCS 185
                   A   
Sbjct: 252 AAKSELDKAIGR 263

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           LFGN L++  ++   +++T TN ++ +LA+AD  +    +PF    ++ 
Sbjct: 32  LFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLM 79

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 92.5 bits (230), Expect = 3e-21
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 2   WEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCV 61
           + FG   C++           ++ SL  ++I+RY+ V +P++  R       A+  +   
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE--NHAIMGVAFT 161

Query: 62  WVLALVITCPPILGW--YDKDRHRDKRCGYN--------QNRGYVVFSGMGSFFIPLLVV 111
           WV+AL    PP++GW  Y  +  +   CG +         N  +V++  +  F IPL+V+
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCS-CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 220

Query: 112 LYVYARISCVIARR 125
            + Y ++   +   
Sbjct: 221 FFCYGQLVFTVKEA 234

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVA 308
              N L +   +  ++LRT  N  +++LAVAD  +        + 
Sbjct: 53  FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLY 97

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 203 SSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPAGTISPLLSNSLTWLGKLS 259
           ++ K E +  + + ++V  F+ CWLP+  V             P+      +  K S
Sbjct: 243 TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 299

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
            W +G   C       +    ASI S+ A++ DRY+A+  PL   +   S      +I  
Sbjct: 97  EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL---QPRLSATATKVVICV 153

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRC--------GYNQNRGYVVFSGMGSFFIPLLVVL 112
           +WVLAL++  P       +       C             + Y +   +  +F+PLLV+ 
Sbjct: 154 IWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIG 213

Query: 113 YVYARISCVIARRHNNLEALNHQHTLGR 140
           Y Y  +   +       ++ +  H    
Sbjct: 214 YAYTVVGITLWASEIPGDSSDRYHEQVS 241

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT 312
           + GN +++  +L  +R+RTVTN F+++LA A+  +  F         + 
Sbjct: 47  VVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH 95

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 84.6 bits (209), Expect = 4e-18
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 1   SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILC 60
           +W FG  LC     +      +S+  L  IS+DRYLA+    T S++ R       + + 
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA-TNSQRPRKLLAEKVVYVG 169

Query: 61  VWVLALVITCPPILGWYDKDRHRDKRCG--YNQNRGYVVFSGMG---SFFIPLLVVLYVY 115
           VW+ AL++T P  +     +      C   Y  +   VVF          +P +V+L  Y
Sbjct: 170 VWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCY 229

Query: 116 ARISCVIARRHNN 128
             I   ++   +N
Sbjct: 230 CIIISKLSHSGSN 242

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF 305
           + GN L+I+ +   ++LR++T+ + + L+VAD L  +  +PF
Sbjct: 63  IVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPF 103

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 15/32 (46%), Positives = 24/32 (75%)

Query: 21 TASILSLCAISIDRYLAVTQPLTYSRKTRSKK 52
          T+SI+ LCAIS+DRY ++TQ + Y+ K   ++
Sbjct: 1  TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	100.0
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	100.0
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	100.0
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	100.0
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	100.0
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	100.0
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	100.0
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	100.0
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	100.0
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	100.0
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.98
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.97
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.97
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.97
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.97
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.97
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.97
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.97
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.44
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.06
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	98.05
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	98.04
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	97.9
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	97.86
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	97.79
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	97.77
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	97.75
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	97.71
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	97.7
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	97.69
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	97.67
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	97.66
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	97.65
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	97.63
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	97.63
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	97.59
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	97.57
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	97.5
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	97.5

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=100.00  E-value=3.3e-40  Score=326.61  Aligned_cols=291  Identities=17%  Similarity=0.219  Sum_probs=180.2

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|+||+.+|+++.++..++.++|++++++||+|||+||++|++|+..+ +++++..+++++|++++++++|+++++....
T Consensus       102 ~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~  180 (510)
T 4grv_A          102 PWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLM-SRSRTKKFISAIWLASALLAIPMLFTMGLQN  180 (510)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCC-CCSCCHHHHHHHHHHHHHHHTTHHHHEEEEE
T ss_pred             CEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccc-cccccceeehHHHHHHHHHHHHHHHhhcccc
Confidence            499999999999999999999999999999999999999999998887 8888999999999999999999999874322


Q ss_pred             CC------CCCcccccCC----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccch---------
Q psy6269          81 RH------RDKRCGYNQN----RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRH---------  141 (366)
Q Consensus        81 ~~------~~~~C~~~~~----~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~---------  141 (366)
                      ..      +...|...+.    ..|..+..++.|++|+++|+++|++|+++++++.+........+....+         
T Consensus       181 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (510)
T 4grv_A          181 RSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYY  260 (510)
T ss_dssp             CSSSSCCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCE
T ss_pred             cccCCCCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccc
Confidence            21      1234554433    2356667778899999999999999999999766544333221110000         


Q ss_pred             -----------hhHhHhhhhccc---ccce-ee--------------------eccccc-----cC--------------
Q psy6269         142 -----------ELAKIKLRVRFN---YCKV-II--------------------IKKTHL-----VL--------------  167 (366)
Q Consensus       142 -----------~~~~~~~~~~~~---~~~~-~~--------------------~~~~~~-----~~--------------  167 (366)
                                 ...+........   .... ..                    ......     +.              
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  340 (510)
T 4grv_A          261 TIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQ  340 (510)
T ss_dssp             EEETTEECCCSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCcccc
Confidence                       000000000000   0000 00                    000000     00              


Q ss_pred             -------CCCcccc--------cccc--ccccccccccc------ccCCccccccccchhhhhhHHHHHHHHHHHHHHHH
Q psy6269         168 -------PSSSIME--------RDRR--KSLASCSFSLQ------RSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIA  224 (366)
Q Consensus       168 -------~~~~~~~--------~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~v  224 (366)
                             .......        ....  .........+.      ...........+....++|+|++||+++|+++|++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~i  420 (510)
T 4grv_A          341 MGETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVV  420 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   0000000        0000  00000000000      00001112223345567899999999999999999


Q ss_pred             hchhHHHHHHHhhhCCCCCCCh-------HHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHH
Q psy6269         225 CWLPFFIVYLANPFLPAGTISP-------LLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWL  297 (366)
Q Consensus       225 cwlP~~i~~~~~~~~~~~~~~~-------~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (366)
                      ||+||+++.++..++++.....       ++..+..||+|+||++||+                                
T Consensus       421 CWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPi--------------------------------  468 (510)
T 4grv_A          421 CWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPI--------------------------------  468 (510)
T ss_dssp             HHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence            9999999999988876654432       3456778999999999999                                


Q ss_pred             hhhhccceEEEeeccccchhHHHHHHHHhhhhcccccch
Q psy6269         298 VGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRT  336 (366)
Q Consensus       298 ~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~~  336 (366)
                              ||++    +|++||++|+++++|.|++.|++
T Consensus       469 --------IY~~----~n~~FR~aFk~iL~C~C~~~r~R  495 (510)
T 4grv_A          469 --------LYNL----VSANFRQVFLSTLACLCPGWRHR  495 (510)
T ss_dssp             --------HHHH----HHSCCCCC---------------
T ss_pred             --------HHHh----cCHHHHHHHHHHHhhcCCCCCCC
Confidence                    9999    99999999999998777665554

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.1e-36  Score=292.48  Aligned_cols=130  Identities=28%  Similarity=0.394  Sum_probs=106.3

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDK-   79 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~-   79 (366)
                      +|++|+.+|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|++++++++|+++++... 
T Consensus        85 ~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~  163 (484)
T 3vw7_A           85 DWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWR-TLGRASFTCLAIWALAIAGVVPLLLKEQTIQ  163 (484)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----C-CHHHHHHHHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             CcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            599999999999999999999999999999999999999999998777 888899999999999999999999987443 


Q ss_pred             -CCCCCCcccccCCcc--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy6269          80 -DRHRDKRCGYNQNRG--------YVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEA  131 (366)
Q Consensus        80 -~~~~~~~C~~~~~~~--------~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~  131 (366)
                       .......|...+...        |..+..++.+++|+++|+++|++|++.++++.++.+.
T Consensus       164 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~  224 (484)
T 3vw7_A          164 VPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEM  224 (484)
T ss_dssp             ETTTTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             cCCCCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHh
Confidence             233456786544221        5556678889999999999999999999988765443

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=100.00  E-value=8.8e-35  Score=283.29  Aligned_cols=288  Identities=26%  Similarity=0.415  Sum_probs=188.8

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDK-   79 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~-   79 (366)
                      +|.+|+..|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|++++++++|+++++... 
T Consensus        88 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~-~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~  166 (467)
T 3uon_A           88 YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKR-TTKMAGMMIAAAWVLSFILWAPAILFWQFIV  166 (467)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            599999999999999999999999999999999999999999998887 888899999999999999999999876332 


Q ss_pred             --CCCCCCcccccC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc---------------
Q psy6269          80 --DRHRDKRCGYNQ--NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGR---------------  140 (366)
Q Consensus        80 --~~~~~~~C~~~~--~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~---------------  140 (366)
                        ...+...|..++  ...|..+..++.+++|+++++++|++|++.++++.++............               
T Consensus       167 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (467)
T 3uon_A          167 GVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIG  246 (467)
T ss_dssp             SCCCCCSSCCCCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHSCCEEEEEECTTSCEEEETT
T ss_pred             cccCCCCCcceeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccceeeccchhhcccccC
Confidence              233456786544  4456777888889999999999999999999988765554332111000               


Q ss_pred             --------hhhHhHhh-hhcccccce-ee------------------eccccccCC---CCccccc--------------
Q psy6269         141 --------HELAKIKL-RVRFNYCKV-II------------------IKKTHLVLP---SSSIMER--------------  175 (366)
Q Consensus       141 --------~~~~~~~~-~~~~~~~~~-~~------------------~~~~~~~~~---~~~~~~~--------------  175 (366)
                              .+.+.... ...+..... ..                  ...+....+   ......+              
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (467)
T 3uon_A          247 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  326 (467)
T ss_dssp             EECCCCSSHHHHHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCcccccccccccccccCCCCcccccccccccccccchhhcccccCCCCCccccccccccccccccceeeccccC
Confidence                    00000000 000000000 00                  000000000   0000000              


Q ss_pred             ----------ccccccccc-----cccccccCC---------ccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269         176 ----------DRRKSLASC-----SFSLQRSGL---------RLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI  231 (366)
Q Consensus       176 ----------~~~~~~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i  231 (366)
                                .+.......     ......+.+         ............++|+|++||+++++++|++||+|+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i  406 (467)
T 3uon_A          327 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNV  406 (467)
T ss_dssp             HGGGHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccchhhhcCccccccccccccccCCCCcccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                      000000000     000000000         00001111223357899999999999999999999999


Q ss_pred             HHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeec
Q psy6269         232 VYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHI  311 (366)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~  311 (366)
                      +.++..+.+ .........+..+|.++|+++||+                                        +|++  
T Consensus       407 ~~~~~~~~~-~~~~~~~~~i~~~L~~~ns~~NPi----------------------------------------IY~~--  443 (467)
T 3uon_A          407 MVLINTFCA-PCIPNTVWTIGYWLCYINSTINPA----------------------------------------CYAL--  443 (467)
T ss_dssp             HHHHHHHCS-TTSCHHHHHHHHHHHHHTTTHHHH----------------------------------------HHHH--
T ss_pred             HHHHHHHHh-cccchHHHHHHHHHHHHhhhhhhH----------------------------------------HHHH--
Confidence            999988765 345678888999999999999999                                        9999  


Q ss_pred             cccchhHHHHHHHHhhhhccccc
Q psy6269         312 TVPRSDFRLAFWRLTLKHCNKSR  334 (366)
Q Consensus       312 ~~~~~~fR~~~~~~~~~~~~~~~  334 (366)
                        ++++||+++++++++.+++.+
T Consensus       444 --~~~~fR~~~~~ll~c~~~~~~  464 (467)
T 3uon_A          444 --CNATFKKTFKHLLMCHYKNIG  464 (467)
T ss_dssp             --HCHHHHHHHHHHCC-------
T ss_pred             --cCHHHHHHHHHHHhhhccCCC
Confidence              999999999999955554433

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=100.00  E-value=2.2e-33  Score=276.90  Aligned_cols=127  Identities=35%  Similarity=0.756  Sum_probs=105.2

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhh-hhcccc
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPI-LGWYDK   79 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~-~~~~~~   79 (366)
                      +|++|+.+|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|+++++++++|+ +++...
T Consensus       105 ~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~-t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~  183 (500)
T 2rh1_A          105 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLL-TKNKARVIILMVWIVSGLTSFLPIQMHWYRA  183 (500)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSS-CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             CCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeee-cccceeehhhHHHHHHHHHHhcchheeeecc
Confidence            599999999999999999999999999999999999999999998877 888899999999999999986544 454332


Q ss_pred             CCCCCCccc-------ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6269          80 DRHRDKRCG-------YNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNN  128 (366)
Q Consensus        80 ~~~~~~~C~-------~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~  128 (366)
                      ...+...|.       ......|..+..++.+++|+++|+++|++|++.++++.++
T Consensus       184 ~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~  239 (500)
T 2rh1_A          184 THQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI  239 (500)
T ss_dssp             CSHHHHHHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred             cccCcceecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222332       2334557777888889999999999999999999998766

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=100.00  E-value=3.8e-34  Score=280.18  Aligned_cols=291  Identities=25%  Similarity=0.350  Sum_probs=191.0

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|...|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|++++++++|+++++....
T Consensus        84 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~-~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~  162 (488)
T 3eml_A           84 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLV-TGTRAKGIIAICWVLSFAIGLTPMLGWNNCG  162 (488)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTS-CHHHHHHHHHHHHHHHHHHHTTGGGTCCSSC
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccccccc-CHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            588999999999999999999999999999999999999999998887 8888999999999999999999999874433


Q ss_pred             CC-----CCCcccccC----------CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccch----
Q psy6269          81 RH-----RDKRCGYNQ----------NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRH----  141 (366)
Q Consensus        81 ~~-----~~~~C~~~~----------~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~----  141 (366)
                      ..     ....|...+          ...+..+..++.+++|+++|+++|++|++.++++.++.............    
T Consensus       163 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (488)
T 3eml_A          163 QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKD  242 (488)
T ss_dssp             C-------CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCEEEEEEC
T ss_pred             ccccccccccccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccccchhhccc
Confidence            21     234565432          11244456778899999999999999999999887765544321111000    


Q ss_pred             -------------------hh---H-hHhhhhcccccceeee-c---cccccCCCCcccccccccc--------------
Q psy6269         142 -------------------EL---A-KIKLRVRFNYCKVIII-K---KTHLVLPSSSIMERDRRKS--------------  180 (366)
Q Consensus       142 -------------------~~---~-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~--------------  180 (366)
                                         +.   . +...+...+...+... .   +.+................              
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (488)
T 3eml_A          243 TEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALI  322 (488)
T ss_dssp             TTSCEEEETTEEEESSSCHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHH
T ss_pred             cccceeccccccCCCCccccccccccccCCCCCCCCCCChhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhh
Confidence                               00   0 0000000000000000 0   0000000000000000000              


Q ss_pred             -----------cccc---------------------ccccc--------ccCCccccccccchhhhhhHHHHHHHHHHHH
Q psy6269         181 -----------LASC---------------------SFSLQ--------RSGLRLTDKCTRVSSLKRESKTAQTLSVVVG  220 (366)
Q Consensus       181 -----------~~~~---------------------~~~~~--------~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~  220 (366)
                                 ....                     ....+        ....+...........++|+|++||++++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~  402 (488)
T 3eml_A          323 NMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVG  402 (488)
T ss_dssp             HHHHHHCHHHHTTCHHHHHHHHTTCHHHHHHHHTTSHHHHHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCccCCCCcchhhhhccccccccCcccccCcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                       0000                     00000        0000001112223445789999999999999


Q ss_pred             HHHHhchhHHHHHHHhhhCCCC-CCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhh
Q psy6269         221 GFIACWLPFFIVYLANPFLPAG-TISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVG  299 (366)
Q Consensus       221 ~f~vcwlP~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (366)
                      +|++||+|+.++.++..+.+.. ........+..+|.++||++||+                                  
T Consensus       403 ~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPi----------------------------------  448 (488)
T 3eml_A          403 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPF----------------------------------  448 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred             HHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchh----------------------------------
Confidence            9999999999999998886543 45667788889999999999999                                  


Q ss_pred             hhccceEEEeeccccchhHHHHHHHHhhhhcccccch
Q psy6269         300 IFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRT  336 (366)
Q Consensus       300 ~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~~  336 (366)
                            +|++    ++++||+++++++++.|++.++.
T Consensus       449 ------IY~~----~~~~fR~~~~~l~~~~~~~~~~~  475 (488)
T 3eml_A          449 ------IYAY----RIREFRQTFRKIIRSHVLRQQEP  475 (488)
T ss_dssp             ------HHHH----HCHHHHHHHHHHHHHTTSCC---
T ss_pred             ------hhhh----cCHHHHHHHHHHHhhcccccCCC
Confidence                  9999    99999999999998877666554

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=275.83  Aligned_cols=279  Identities=33%  Similarity=0.570  Sum_probs=185.8

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCcc---CccccchhhHHHHHHHHHHHHHHHhhhhhhhcc
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTY---SRKTRSKKLALYMILCVWVLALVITCPPILGWY   77 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y---~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~   77 (366)
                      +|.+|+..|++..++..++..+|++++++||+|||++|++|++|   .... +++++..+++++|++++++++|+++++.
T Consensus       104 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~-~~~~~~~~i~~~W~~~~~~~~~~~~~~~  182 (481)
T 3pbl_A          104 VWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQS-SCRRVALMITAVWVLAFAVSCPLLFGFN  182 (481)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            49999999999999999999999999999999999999999998   4555 7788999999999999999999998775


Q ss_pred             ccCCCCCCcccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc------------------
Q psy6269          78 DKDRHRDKRCGYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLG------------------  139 (366)
Q Consensus        78 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~------------------  139 (366)
                      ..  .+...|...+ ..|..+..++.+++|+++++++|++|++.++++.++...........                  
T Consensus       183 ~~--~~~~~C~~~~-~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (481)
T 3pbl_A          183 TT--GDPTVCSISN-PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIG  259 (481)
T ss_dssp             CC--SSTTCCSCCC-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCEECSSSCEEETTT
T ss_pred             cc--CCCCcccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccccCcccceeeccc
Confidence            43  3455686553 34677778888999999999999999999998765533222110000                  


Q ss_pred             -------chhhHhHhhhhcccccceeeeccc--------c------------ccCC---CCccccc--------------
Q psy6269         140 -------RHELAKIKLRVRFNYCKVIIIKKT--------H------------LVLP---SSSIMER--------------  175 (366)
Q Consensus       140 -------~~~~~~~~~~~~~~~~~~~~~~~~--------~------------~~~~---~~~~~~~--------------  175 (366)
                             ........................        .            ...+   +.....+              
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (481)
T 3pbl_A          260 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  339 (481)
T ss_dssp             EEEESSSCHHHHHHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcccccCCCcccchhccCCCceeccCCchhcccCCcccccccccccCccCccccccccccchhccccccccCCCC
Confidence                   000000000000000000000000        0            0000   0000000              


Q ss_pred             ----------ccccccccccccccccC--------------CccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269         176 ----------DRRKSLASCSFSLQRSG--------------LRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI  231 (366)
Q Consensus       176 ----------~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i  231 (366)
                                .+...............              .............++|+|++||+++++++|++||+|+.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i  419 (481)
T 3pbl_A          340 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFL  419 (481)
T ss_dssp             HTTCHHHHHHHHTTCHHHHHHHHHTSHHHHHSHHHHHHHHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccchhccccccccchhhhccccccCCcccccccceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHH
Confidence                      00000000000000000              000000111122346999999999999999999999999


Q ss_pred             HHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeec
Q psy6269         232 VYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHI  311 (366)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~  311 (366)
                      +.++..+.+.......+..+..+|.++|+++||+                                        +|++  
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPi----------------------------------------IY~~--  457 (481)
T 3pbl_A          420 THVLNTHCQTCHVSPELYSATTWLGYVNSALNPV----------------------------------------IYTT--  457 (481)
T ss_dssp             HHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHH--
T ss_pred             HHHHHhccccccCcHHHHHHHHHHHHHhhccchH----------------------------------------HHHH--
Confidence            9999888776677788889999999999999999                                        9999  


Q ss_pred             cccchhHHHHHHHHhh
Q psy6269         312 TVPRSDFRLAFWRLTL  327 (366)
Q Consensus       312 ~~~~~~fR~~~~~~~~  327 (366)
                        ++++||++++++++
T Consensus       458 --~~~~fR~~~~~ll~  471 (481)
T 3pbl_A          458 --FNIEFRKAFLKILS  471 (481)
T ss_dssp             --HCHHHHHHHHHHHC
T ss_pred             --cCHHHHHHHHHHHh
Confidence              99999999999994

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=100.00  E-value=1.9e-34  Score=279.30  Aligned_cols=291  Identities=24%  Similarity=0.333  Sum_probs=186.5

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++..++..+|++++++||+|||++|++|++|+.++ +++++..+++++|++++++++|+++++....
T Consensus        94 ~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~-~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~  172 (447)
T 4eiy_A           94 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLV-TGTRAKGIIAICWVLSFAIGLTPMLGWNNCG  172 (447)
T ss_dssp             TCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTGGGGTCSSTT
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhh-hHHHHHHHHhHHHHHHHHHHHhhhheecccc
Confidence            488899999999999999999999999999999999999999998877 8888999999999999999999999875433


Q ss_pred             CCC-----CCcccccC----------CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccc-----
Q psy6269          81 RHR-----DKRCGYNQ----------NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGR-----  140 (366)
Q Consensus        81 ~~~-----~~~C~~~~----------~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~-----  140 (366)
                      ...     ...|...+          ...+.....++.+++|+++++++|++|++.++++.++............     
T Consensus       173 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~  252 (447)
T 4eiy_A          173 QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEK  252 (447)
T ss_dssp             SCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCccccccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCc
Confidence            321     23343321          1123333455668999999999999999999998776654322110000     


Q ss_pred             -hhhHhHhhhhcc--------cccceeeeccccccCCCCcccccc-----------cccccccccc---------ccccc
Q psy6269         141 -HELAKIKLRVRF--------NYCKVIIIKKTHLVLPSSSIMERD-----------RRKSLASCSF---------SLQRS  191 (366)
Q Consensus       141 -~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~---------~~~~~  191 (366)
                       .+....+.....        ....+..........+........           ..........         ...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (447)
T 4eiy_A          253 ADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRN  332 (447)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHH
T ss_pred             cccchhhhccchhhhccCCCCCCCCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcccCCcCcccchhhhhccccc
Confidence             000000000000        000000000000000000000000           0000000000         00000


Q ss_pred             CCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHHHHhhhCCC-CCCChHHHHHHHHHHHHhhhhccccchhh
Q psy6269         192 GLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVYLANPFLPA-GTISPLLSNSLTWLGKLSGSLRLFGNTLI  270 (366)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~vNP~~n~~~  270 (366)
                      ..........+...++++|++||+++++++|++||+|+.++.++..+.++ .....+...+..++.++||++||+     
T Consensus       333 ~~~~~~~~~~~~~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPi-----  407 (447)
T 4eiy_A          333 AYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPF-----  407 (447)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             chhhccccchhHHHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchh-----
Confidence            01111122334456789999999999999999999999999999887654 345667788899999999999999     


Q ss_pred             hhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHhhhhcccccch
Q psy6269         271 IISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTLKHCNKSRRT  336 (366)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~~~~~~~~~~  336 (366)
                                                         +|++    ++++||+++++++++.+++.+..
T Consensus       408 -----------------------------------IY~~----~~~~fR~~~~~~~~~~~~r~~~~  434 (447)
T 4eiy_A          408 -----------------------------------IYAY----RIREFRQTFRKIIRSHVLRQQEP  434 (447)
T ss_dssp             -----------------------------------HHHH----HCHHHHHHHHHHHHHTC------
T ss_pred             -----------------------------------hhHh----ccHHHHHHHHHHHHHHHhccCCC
Confidence                                               9999    99999999999997776655444

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-33  Score=270.30  Aligned_cols=285  Identities=25%  Similarity=0.418  Sum_probs=183.4

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|++|+..|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|++++++++|.+.......
T Consensus        73 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~-~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~  151 (452)
T 3rze_A           73 KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR-TKTRASATILGAWFLSFLWVIPILGWNHFMQ  151 (452)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTS-SHHHHHHHHHHHHHHHGGGHHHHHCCCC---
T ss_pred             CccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            599999999999999999999999999999999999999999998887 8888999999999999999888543322111


Q ss_pred             C---CCCCcccccC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc----------------
Q psy6269          81 R---HRDKRCGYNQ--NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLG----------------  139 (366)
Q Consensus        81 ~---~~~~~C~~~~--~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~----------------  139 (366)
                      .   .....|..++  ...|..+..++.+++|+++++++|++|++.++++.++...........                
T Consensus       152 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (452)
T 3rze_A          152 QTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIG  231 (452)
T ss_dssp             ----CCSSSSCCSCTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHCEEEEEEECTTSCEEEEET
T ss_pred             ccccCCCCeecCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhhhhcccCCcccccccc
Confidence            1   2456785443  444677788888999999999999999999988766544433211100                


Q ss_pred             -------chhhHhHhh----hhcccccceeeecc----ccccCCCCcccccccc-----------------------ccc
Q psy6269         140 -------RHELAKIKL----RVRFNYCKVIIIKK----THLVLPSSSIMERDRR-----------------------KSL  181 (366)
Q Consensus       140 -------~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-----------------------~~~  181 (366)
                             ..+......    +...++........    .+..........+...                       ..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (452)
T 3rze_A          232 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETG  311 (452)
T ss_dssp             EECSSCSSHHHHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHCHHH
T ss_pred             cccccCCCCCcccccccCCCCCCCCccccCCcccchhcCCCcccccCcccccccCCcccCCCccccccccccccccCCCC
Confidence                   000000000    00000000000000    0000000000000000                       000


Q ss_pred             ccccc----------------cccccC--Cc------------cccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269         182 ASCSF----------------SLQRSG--LR------------LTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI  231 (366)
Q Consensus       182 ~~~~~----------------~~~~~~--~~------------~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i  231 (366)
                      .+...                ......  +.            .....+.....++|+|++||+++++++|++||+|+.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~f~icwlP~~i  391 (452)
T 3rze_A          312 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFI  391 (452)
T ss_dssp             HTSCHHHHHHHHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCcchhhhcCCccccccccCCccCCCCCcccchhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            00000                000000  00            0001111234568999999999999999999999999


Q ss_pred             HHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeec
Q psy6269         232 VYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHI  311 (366)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~  311 (366)
                      +.++..+.+. .....+..+..+|.++|+++||+                                        +|++  
T Consensus       392 ~~l~~~~~~~-~~~~~~~~~~~~L~~~ns~~NPi----------------------------------------IY~~--  428 (452)
T 3rze_A          392 FFMVIAFCKN-CCNEHLHMFTIWLGYINSTLNPL----------------------------------------IYPL--  428 (452)
T ss_dssp             HHHHHHHHSC-CSCTTTHHHHHHHHHHHHHHHHH----------------------------------------HHHH--
T ss_pred             HHHHHHHhcc-cccHHHHHHHHHHHHHHhcccch----------------------------------------hhhh--
Confidence            9999877544 34456677889999999999999                                        9999  


Q ss_pred             cccchhHHHHHHHHhhhhcc
Q psy6269         312 TVPRSDFRLAFWRLTLKHCN  331 (366)
Q Consensus       312 ~~~~~~fR~~~~~~~~~~~~  331 (366)
                        ++++||+++++++++.++
T Consensus       429 --~~~~fR~~~~~ll~~~~~  446 (452)
T 3rze_A          429 --CNENFKKTFKRILHIRSG  446 (452)
T ss_dssp             --HCHHHHHHHHHHHTC---
T ss_pred             --ccHHHHHHHHHHHHhccc
Confidence              999999999999954443

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=100.00  E-value=1.3e-34  Score=284.75  Aligned_cols=131  Identities=22%  Similarity=0.318  Sum_probs=112.6

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|++|+..|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|++++++++|+++.+....
T Consensus       111 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~-~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~  189 (502)
T 3odu_A          111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPR-KLLAEKVVYVGVWIPALLLTIPDFIFANVSE  189 (502)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH-HHHHHTHHHHHTHHHHHHTTHHHHHHEEEEE
T ss_pred             CCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeccccccccc-chhHHHHhhhHHHHHHHHHHHHHHHheeeec
Confidence            599999999999999999999999999999999999999999998777 8888999999999999999999998776555


Q ss_pred             CCCCCcccccCCc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy6269          81 RHRDKRCGYNQNR-----GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEAL  132 (366)
Q Consensus        81 ~~~~~~C~~~~~~-----~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~  132 (366)
                      ..+...|...+..     .|.+...++.+++|+++|+++|++|++.++++.++....
T Consensus       190 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~  246 (502)
T 3odu_A          190 ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEM  246 (502)
T ss_dssp             CSSSEEEEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHH
T ss_pred             cCCceEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Confidence            5566778754432     255556778889999999999999999999877665443

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=100.00  E-value=4.4e-34  Score=277.93  Aligned_cols=132  Identities=27%  Similarity=0.482  Sum_probs=111.6

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++..++..+|++++++||+|||++|++|++|+..+ +++++..+++++|++++++++|+++......
T Consensus        81 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~-~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~  159 (464)
T 4dkl_A           81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFR-TPRNAKIVNVCNWILSSAIGLPVMFMATTKY  159 (464)
T ss_dssp             SCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHSBCCEE
T ss_pred             CcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cccHhHHhHHHHHHHHHHHHHHHHHheeecc
Confidence            599999999999999999999999999999999999999999998777 8888999999999999999999988665544


Q ss_pred             CCCCCcccccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy6269          81 RHRDKRCGYNQNR-------GYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALN  133 (366)
Q Consensus        81 ~~~~~~C~~~~~~-------~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~  133 (366)
                      ..+...|...+..       .|.....++.+++|+++++++|++|++.+++++++.+...
T Consensus       160 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~~  219 (464)
T 4dkl_A          160 RQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLR  219 (464)
T ss_dssp             ETTEEECCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHHH
T ss_pred             cCCCceEEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhc
Confidence            4556667654422       2556677778999999999999999999988766554443

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.98  E-value=4e-32  Score=269.25  Aligned_cols=122  Identities=20%  Similarity=0.357  Sum_probs=99.9

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      .|.+|+..|++..++..++.++|++++++||+|||+||+ |++|+..+ +++++..+++++|++++++++|+++++... 
T Consensus       127 ~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~-t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~-  203 (520)
T 3v2y_A          127 TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-KMKLHNGS-NNFRLFLLISACWVISLILGGLPIMGWNCI-  203 (520)
T ss_dssp             GTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT-
T ss_pred             ceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-cccccccc-chhHHHHHHHHHHHHHHHHHHHHHHeeccc-
Confidence            489999999999999999999999999999999999999 99998887 888899999999999999999999988655 


Q ss_pred             CCCCCcccccCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6269          81 RHRDKRCGYNQN--RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRH  126 (366)
Q Consensus        81 ~~~~~~C~~~~~--~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~  126 (366)
                       .+...|...+.  ..+.....++.|++|+++|++||.+|++.+++++
T Consensus       204 -~~~~~C~~~~~~~~~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~  250 (520)
T 3v2y_A          204 -SALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRN  250 (520)
T ss_dssp             -TCGGGBCSSSTTBBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCcccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             34568976542  2334445566799999999999999999999876

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.97  E-value=2e-31  Score=258.95  Aligned_cols=226  Identities=23%  Similarity=0.416  Sum_probs=182.9

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++..++..+|++++++||+|||++|++|++|+.++ +++++..+++++|++++++++++++++....
T Consensus       100 ~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~-~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~  178 (448)
T 2z73_A          100 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKM-SHRRAFIMIIFVWLWSVLWAIGPIFGWGAYT  178 (448)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCC-CHHHHHHHHHHHHHHHHHHHSGGGGTSSCEE
T ss_pred             CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccee-chhHHHHHHHHHHHHHHHHHHHHHhceeeee
Confidence            599999999999999999999999999999999999999999998777 8888999999999999999999998874432


Q ss_pred             C-CCCCcccccCC------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhccc
Q psy6269          81 R-HRDKRCGYNQN------RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRFN  153 (366)
Q Consensus        81 ~-~~~~~C~~~~~------~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (366)
                      . .....|..++.      ..+.....++.+++|+++++++|++|++.++++.++..+.........             
T Consensus       179 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~-------------  245 (448)
T 2z73_A          179 LEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKE-------------  245 (448)
T ss_dssp             ECTTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTT-------------
T ss_pred             ecCCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------------
Confidence            2 23456765432      224555666778999999999999999999998776654422110000             


Q ss_pred             ccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6269         154 YCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIVY  233 (366)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~~  233 (366)
                                                                  ..+.+...++++|++|++++++++|++||+|+.++.
T Consensus       246 --------------------------------------------~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~  281 (448)
T 2z73_A          246 --------------------------------------------LRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVA  281 (448)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------HHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                                                        011223446789999999999999999999999999


Q ss_pred             HHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccc
Q psy6269         234 LANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITV  313 (366)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~  313 (366)
                      ++..+............+..++.++|+++||+                                        +|++    
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPi----------------------------------------IY~~----  317 (448)
T 2z73_A          282 LLAQFGPLEWVTPYAAQLPVMFAKASAIHNPM----------------------------------------IYSV----  317 (448)
T ss_dssp             HHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHH----------------------------------------HHHH----
T ss_pred             HHHHhCCcccCChHHHHHHHHHHHHHHhhcch----------------------------------------HHHH----
Confidence            98877544344566777888999999999999                                        9999    


Q ss_pred             cchhHHHHHHHHhhh
Q psy6269         314 PRSDFRLAFWRLTLK  328 (366)
Q Consensus       314 ~~~~fR~~~~~~~~~  328 (366)
                      ++++||+++++++++
T Consensus       318 ~~~~fR~~~~~~~~~  332 (448)
T 2z73_A          318 SHPKFREAISQTFPW  332 (448)
T ss_dssp             HCHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999999854

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.97  E-value=2.5e-31  Score=250.87  Aligned_cols=215  Identities=24%  Similarity=0.383  Sum_probs=172.1

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++..++..+|.+++++||+|||++|++|++|+  . +++++..+++++|++++++++|++.......
T Consensus        97 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~--~-~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~  173 (364)
T 2ks9_A           97 EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR--L-SATATKVVICVIWVLALLLAFPQGYYSTTET  173 (364)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS--C-CHHHHHHHHHHHHHHHHHHHTTTTTTSCCCB
T ss_pred             CccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--c-ccchHHHHHHHHHHHHHHHHhHHHHHhhhee
Confidence            599999999999999999999999999999999999999999975  3 7777888999999999999998765444344


Q ss_pred             CCCCCcccccCC--------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269          81 RHRDKRCGYNQN--------RGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF  152 (366)
Q Consensus        81 ~~~~~~C~~~~~--------~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      ..+...|..++.        ..|.....++.+++|+++++++|.+|++.+++++.+...                     
T Consensus       174 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~---------------------  232 (364)
T 2ks9_A          174 MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS---------------------  232 (364)
T ss_dssp             CTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSS---------------------
T ss_pred             cCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---------------------
Confidence            445667865432        135556777788999999999999999887643211000                     


Q ss_pred             cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269         153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV  232 (366)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~  232 (366)
                                                                   ....+.+.++++|++|++++++++|++||+|+.+.
T Consensus       233 ---------------------------------------------~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~  267 (364)
T 2ks9_A          233 ---------------------------------------------SDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIF  267 (364)
T ss_dssp             ---------------------------------------------SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------chhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                         00111344678999999999999999999999999


Q ss_pred             HHHhhhCCCC---CCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEe
Q psy6269         233 YLANPFLPAG---TISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVAL  309 (366)
Q Consensus       233 ~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~  309 (366)
                      .++..+.++.   ........+..++.++|+++||+                                        +|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPi----------------------------------------iY~~  307 (364)
T 2ks9_A          268 FLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPI----------------------------------------IYCC  307 (364)
T ss_dssp             HHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHH
T ss_pred             HHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHH
Confidence            9887765432   22345667778899999999999                                        9999


Q ss_pred             eccccchhHHHHHHHHhhh
Q psy6269         310 HITVPRSDFRLAFWRLTLK  328 (366)
Q Consensus       310 ~~~~~~~~fR~~~~~~~~~  328 (366)
                          .+++||+++++++++
T Consensus       308 ----~~~~fR~~~~~~~~~  322 (364)
T 2ks9_A          308 ----LNDRFRLGFKHAFRC  322 (364)
T ss_dssp             ----HCHHHHHHHHHHHSS
T ss_pred             ----HhHHHHHHHHHHHhh
Confidence                999999999999964

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.97  E-value=7.5e-31  Score=241.84  Aligned_cols=217  Identities=34%  Similarity=0.660  Sum_probs=171.8

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|++|+..|++..++..++..+|.+++++||+|||++|++|++|+..+ +++++..+++++|++++++++|+.+......
T Consensus        76 ~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~-~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~  154 (315)
T 4amj_A           76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLM-TRARAKVIICTVWAISALVSFLPIMMHWWRD  154 (315)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             CeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-chhhHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence            599999999999999999999999999999999999999999988777 8888999999999999999988887543222


Q ss_pred             C-CCCCcc-------cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269          81 R-HRDKRC-------GYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF  152 (366)
Q Consensus        81 ~-~~~~~C-------~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      . .+...|       +......|.....++.+++|+++++++|.+|++.++++.++.+....                  
T Consensus       155 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~------------------  216 (315)
T 4amj_A          155 EDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASK------------------  216 (315)
T ss_dssp             CSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred             cCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc------------------
Confidence            2 122233       22344556777777888999999999999999999876554322111                  


Q ss_pred             cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269         153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV  232 (366)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~  232 (366)
                                                                   ...++...++|+|+++++++++++|++||+|+.+.
T Consensus       217 ---------------------------------------------~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~  251 (315)
T 4amj_A          217 ---------------------------------------------RKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLV  251 (315)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                         01122344678999999999999999999999999


Q ss_pred             HHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeecc
Q psy6269         233 YLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT  312 (366)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~  312 (366)
                      .++..+.+ .........+..++.++||++||+                                        +| .   
T Consensus       252 ~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~nPi----------------------------------------iY-~---  286 (315)
T 4amj_A          252 NIVNVFNR-DLVPDWLFVAFNWLGYANSAMNPI----------------------------------------IY-C---  286 (315)
T ss_dssp             HHHHHHCT-TSSCHHHHHHHHHHHHHGGGTHHH----------------------------------------HG-G---
T ss_pred             HHHHHhcC-ccchHHHHHHHHHHHHHhccccHH----------------------------------------HH-c---
Confidence            99887653 344567778888999999999999                                        98 3   


Q ss_pred             ccchhHHHHHHHHhh
Q psy6269         313 VPRSDFRLAFWRLTL  327 (366)
Q Consensus       313 ~~~~~fR~~~~~~~~  327 (366)
                       .+++||++++++++
T Consensus       287 -~~~~fR~~~~~~l~  300 (315)
T 4amj_A          287 -RSPDFRKAFKRLLA  300 (315)
T ss_dssp             -GSHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHHHhC
Confidence             58999999999994

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.97  E-value=9.8e-32  Score=251.72  Aligned_cols=212  Identities=21%  Similarity=0.414  Sum_probs=174.8

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++..++..+|.+++++||+|||++|++|++|+. + +++++...++++|++++++++|+++++....
T Consensus       103 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~-~-~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~  180 (349)
T 1u19_A          103 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-F-GENHAIMGVAFTWVMALACAAPPLVGWSRYI  180 (349)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-C-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCE
T ss_pred             eeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCcccee-e-ccchhHHHHHHHHHHHHHHHHHHHHheeeee
Confidence            4999999999999999999999999999999999999999999865 5 7788999999999999999999998874332


Q ss_pred             -CCCCCcccccC--------CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhc
Q psy6269          81 -RHRDKRCGYNQ--------NRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVR  151 (366)
Q Consensus        81 -~~~~~~C~~~~--------~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (366)
                       +.....|..++        ...|.....++.+++|+++++++|.+|++.++++.++.+                     
T Consensus       181 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~---------------------  239 (349)
T 1u19_A          181 PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ---------------------  239 (349)
T ss_dssp             EETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC---------------------
T ss_pred             ccCCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---------------------
Confidence             22345675443        223555666777899999999999999988765433210                     


Q ss_pred             ccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269         152 FNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI  231 (366)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i  231 (366)
                                                                      ++....++++|++|++++++++|++||+|+.+
T Consensus       240 ------------------------------------------------~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i  271 (349)
T 1u19_A          240 ------------------------------------------------ESATTQKAEKEVTRMVIIMVIAFLICWLPYAG  271 (349)
T ss_dssp             ------------------------------------------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                            01123467889999999999999999999999


Q ss_pred             HHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeec
Q psy6269         232 VYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHI  311 (366)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~  311 (366)
                      ..++....++.........+..++.++|+++||+                                        +|++  
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPi----------------------------------------iY~~--  309 (349)
T 1u19_A          272 VAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV----------------------------------------IYIM--  309 (349)
T ss_dssp             HHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHH----------------------------------------HHHH--
T ss_pred             HhHhheecCCcccchHHHHHHHHHHHHHHHHhHH----------------------------------------HHHH--
Confidence            9888777655555667778888999999999999                                        9999  


Q ss_pred             cccchhHHHHHHHHhh
Q psy6269         312 TVPRSDFRLAFWRLTL  327 (366)
Q Consensus       312 ~~~~~~fR~~~~~~~~  327 (366)
                        .+++||++++++++
T Consensus       310 --~~~~fR~~~~~~~~  323 (349)
T 1u19_A          310 --MNKQFRNCMVTTLC  323 (349)
T ss_dssp             --TCHHHHHHHHHHHT
T ss_pred             --HhHHHHHHHHHHhc
Confidence              99999999999984

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=238.69  Aligned_cols=203  Identities=24%  Similarity=0.412  Sum_probs=164.8

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|.+|+..|++..++...+..+|.+++++||+|||++|++|++|+..  .++++..+++++|++++++++|+.+++....
T Consensus        74 ~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~--~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~  151 (296)
T 2lnl_A           74 GWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQ--KRHLVKFVCLGCWGLSMNLSLPFFLFRQAYH  151 (296)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCC--HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred             CCccchhHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchh--hhhhhHheehHHHHHHHHHhcchhhcceeec
Confidence            59999999999999999999999999999999999999999998765  3455677888899999999999998875544


Q ss_pred             CCCCC-cccc-------cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269          81 RHRDK-RCGY-------NQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF  152 (366)
Q Consensus        81 ~~~~~-~C~~-------~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      ..... .|..       .....+......+.+++|+.++.++|.++.+.++++                           
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~---------------------------  204 (296)
T 2lnl_A          152 PNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA---------------------------  204 (296)
T ss_dssp             CCTTSCCCCSCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC---------------------------
T ss_pred             CCCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence            33222 2211       123335666778889999999999999887544321                           


Q ss_pred             cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269         153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV  232 (366)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~  232 (366)
                                                                         ..++++|++|++++++++|++||+|+.+.
T Consensus       205 ---------------------------------------------------~~~~~~k~~~~~~~v~~~f~icw~P~~i~  233 (296)
T 2lnl_A          205 ---------------------------------------------------HMGQKHRAMRVIFAVVLIFLLCWLPYNLV  233 (296)
T ss_dssp             ---------------------------------------------------CCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------hhhhhhhHHHHHHHhhhheeeeehHHHHH
Confidence                                                               12567899999999999999999999999


Q ss_pred             HHHhhhCCCCCCC---------hHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhcc
Q psy6269         233 YLANPFLPAGTIS---------PLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVM  303 (366)
Q Consensus       233 ~~~~~~~~~~~~~---------~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (366)
                      .++..+.+.....         .....+..+++++||++||+                                      
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPi--------------------------------------  275 (296)
T 2lnl_A          234 LLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPI--------------------------------------  275 (296)
T ss_dssp             HHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHH--------------------------------------
T ss_pred             HHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Confidence            9998776543322         23456778899999999999                                      


Q ss_pred             ceEEEeeccccchhHHHHHHHHhh
Q psy6269         304 PFAVALHITVPRSDFRLAFWRLTL  327 (366)
Q Consensus       304 ~~iy~~~~~~~~~~fR~~~~~~~~  327 (366)
                        +|++    ++++||++++|+++
T Consensus       276 --IY~~----~~~~fR~~~~~ll~  293 (296)
T 2lnl_A          276 --IYAF----IGQNFRHGFLKILA  293 (296)
T ss_dssp             --HHHH----HCSHHHHHHHHHHH
T ss_pred             --HHHh----cCHHHHHHHHHHhc
Confidence              9999    99999999999994

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.97  E-value=5.4e-30  Score=253.45  Aligned_cols=236  Identities=30%  Similarity=0.602  Sum_probs=174.8

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhh-hcccc
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPIL-GWYDK   79 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~-~~~~~   79 (366)
                      +|++|+..|++..++..++..+|++++++||+|||++|++|++|+.++ +++++..+++++|+++++++++|++ ++...
T Consensus       247 ~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~-t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~  325 (514)
T 3sn6_R          247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLL-TKNKARVIILMVWIVSGLTSFLPIQMHWYRA  325 (514)
T ss_dssp             SCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHC-CHHHHHHHHHHHHHHHHHTTHHHHHTTTTC-
T ss_pred             CeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhc-cchHHHHHHHHHHHHHHHHHhhhhhccceec
Confidence            599999999999999999999999999999999999999999998777 8888999999999999999977665 33322


Q ss_pred             CCCCCCcc-------cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhcc
Q psy6269          80 DRHRDKRC-------GYNQNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVRF  152 (366)
Q Consensus        80 ~~~~~~~C-------~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (366)
                      ...+...|       .......|.....++.+++|+++++++|.+|++.++++.++.............           
T Consensus       326 ~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~-----------  394 (514)
T 3sn6_R          326 THQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNL-----------  394 (514)
T ss_dssp             --CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------
T ss_pred             ccCcccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc-----------
Confidence            22222223       223345577788888899999999999999999999887765543221000000           


Q ss_pred             cccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHHH
Q psy6269         153 NYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFIV  232 (366)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i~  232 (366)
                                                 ++     .. ..........+..+..++++|+++++++++++|++||+|+.++
T Consensus       395 ---------------------------~~-----~~-~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~  441 (514)
T 3sn6_R          395 ---------------------------SQ-----VE-QDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIV  441 (514)
T ss_dssp             ----------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------cc-----cc-ccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       00     00 0000000011223345789999999999999999999999999


Q ss_pred             HHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeecc
Q psy6269         233 YLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHIT  312 (366)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~  312 (366)
                      .++..+.+ .........+..++.++||++||+                                        ||+    
T Consensus       442 ~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPi----------------------------------------IY~----  476 (514)
T 3sn6_R          442 NIVHVIQD-NLIRKEVYILLNWIGYVNSGFNPL----------------------------------------IYC----  476 (514)
T ss_dssp             HHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHH----------------------------------------HHT----
T ss_pred             HHHHHHcc-cccchHHHHHHHHHHHHHHhhhHH----------------------------------------hhc----
Confidence            99887743 345567778888999999999999                                        993    


Q ss_pred             ccchhHHHHHHHHhh
Q psy6269         313 VPRSDFRLAFWRLTL  327 (366)
Q Consensus       313 ~~~~~fR~~~~~~~~  327 (366)
                       ++++||++++++++
T Consensus       477 -~~~~fR~~~~~~l~  490 (514)
T 3sn6_R          477 -RSPDFRIAFQELLC  490 (514)
T ss_dssp             -TCHHHHHHHHTTCC
T ss_pred             -CCHHHHHHHHHHhC
Confidence             57999999999984

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.44  E-value=4.6e-08  Score=57.45  Aligned_cols=27  Identities=52%  Similarity=0.915  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhhhhhhhccCccCccc
Q psy6269          22 ASILSLCAISIDRYLAVTQPLTYSRKT   48 (366)
Q Consensus        22 ~S~~~l~~IaidRY~aV~~Pl~y~~~~   48 (366)
                      +|++++++||+|||++|++|++|...+
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~   28 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKR   28 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhccccc
Confidence            689999999999999999999988776

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.06  E-value=4.1e-07  Score=53.69  Aligned_cols=30  Identities=23%  Similarity=0.633  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHhchhHHHHHHHhh
Q psy6269         208 ESKTAQTLSVVVGGFIACWLPFFIVYLANP  237 (366)
Q Consensus       208 ~~k~~k~l~~v~~~f~vcwlP~~i~~~~~~  237 (366)
                      |+|++|++++++++|++||+||++..++..
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            457889999999999999999999877643

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=98.05  E-value=1.5e-06  Score=78.50  Aligned_cols=45  Identities=36%  Similarity=0.644  Sum_probs=39.4

Q ss_pred             hhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccce
Q psy6269         260 GSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPF  305 (366)
Q Consensus       260 s~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (366)
                      ..+.-+||.++++++.++|++||++|+|+.|||+||+++++. +|+
T Consensus        22 ~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~   66 (296)
T 2lnl_A           22 FLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPI   66 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhH
Confidence            345567999999999999999999999999999999999865 444

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=98.04  E-value=8.4e-07  Score=54.82  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHHHhh
Q psy6269         248 LSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWRLTL  327 (366)
Q Consensus       248 ~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~~~~  327 (366)
                      ++.++.+++++||++||+                                        +|++    .+++||++++++++
T Consensus         2 ~~~~~~~l~~~ns~lNPi----------------------------------------IY~~----~~~~fr~~~~~~~~   37 (40)
T 2koe_A            2 VFAFASMLCLLNSTVNPI----------------------------------------IYAL----RSKDLRHAFRSMFP   37 (40)
T ss_dssp             HHHHHHHHHHHHHHSSTT----------------------------------------TTBT----TBHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHH----------------------------------------HHHH----ccHHHHHHHHHHhh
Confidence            356778899999999999                                        9999    99999999999873

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=97.90  E-value=5.1e-06  Score=81.40  Aligned_cols=66  Identities=21%  Similarity=0.257  Sum_probs=45.5

Q ss_pred             hhccccchhhhhhhhhccccc---cchhhHHHHHHHHHHHhhhhccceEEEeec-cccchhHHHHHHHHh
Q psy6269         261 SLRLFGNTLIIISVLTTRRLR---TVTNCFVMSLAVADWLVGIFVMPFAVALHI-TVPRSDFRLAFWRLT  326 (366)
Q Consensus       261 ~vNP~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~-~~~~~~fR~~~~~~~  326 (366)
                      ++.-+||+++++++.++|++|   |++|+||.|||+||++++++.+|+...... ....+.|...+.++.
T Consensus        44 ~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~  113 (510)
T 4grv_A           44 VVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGY  113 (510)
T ss_dssp             HHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHH
Confidence            445579999999999887655   789999999999999999999996322111 002355666665544

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=97.86  E-value=7.1e-06  Score=80.10  Aligned_cols=50  Identities=44%  Similarity=0.676  Sum_probs=43.8

Q ss_pred             HhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         258 LSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       258 ~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      +-.++.-+||+++++++.+++++|+++|+||.|||+||++++++.+|+..
T Consensus        49 ~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~   98 (500)
T 2rh1_A           49 LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA   98 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455567999999999999999999999999999999999999988643

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=97.79  E-value=8.6e-06  Score=79.95  Aligned_cols=48  Identities=17%  Similarity=0.376  Sum_probs=42.6

Q ss_pred             hhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         260 GSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       260 s~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      .++.-+||+++++++.+++++|+++|+||.|||+||++++++..|+..
T Consensus        74 ~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~  121 (520)
T 3v2y_A           74 CCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLL  121 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556999999999999999999999999999999999998888654

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=97.77  E-value=1.2e-05  Score=76.65  Aligned_cols=58  Identities=36%  Similarity=0.544  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEE
Q psy6269         251 SLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVA  308 (366)
Q Consensus       251 ~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~  308 (366)
                      +...+..+-.++.-+||.++++++.+++++|+++|+||.|||+||++++++.+|+...
T Consensus        33 ~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~   90 (447)
T 4eiy_A           33 VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT   90 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445556677789999999999999999999999999999999999999986543

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=97.75  E-value=1.6e-05  Score=77.04  Aligned_cols=62  Identities=24%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEE
Q psy6269         246 PLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVA  308 (366)
Q Consensus       246 ~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~  308 (366)
                      .....+...+..+-.++.-+||+++++++.+++++|+++|+||.|||+||++++ +.+|+...
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~  106 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAV  106 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            333444444445555667789999999999999999999999999999999995 67776543

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=97.71  E-value=1.2e-05  Score=72.62  Aligned_cols=57  Identities=42%  Similarity=0.640  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         251 SLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       251 ~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      ....+..+-..+.-+||.++++++.+.+++|+++|+|+.|||+||++++++..|+..
T Consensus        13 ~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~   69 (315)
T 4amj_A           13 GMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA   69 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence            334444455566677999999999999999999999999999999999998888643

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=97.70  E-value=2.3e-05  Score=72.71  Aligned_cols=48  Identities=29%  Similarity=0.453  Sum_probs=42.5

Q ss_pred             hhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         260 GSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       260 s~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      ..+.-+||.++++++.++|++|+++|+|+.|||+||++++++..|+..
T Consensus        43 ~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~   90 (364)
T 2ks9_A           43 VVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNF   90 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455567999999999999999999999999999999999998888643

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=97.69  E-value=2.6e-05  Score=71.68  Aligned_cols=52  Identities=25%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             HHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         256 GKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       256 ~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      ..+-..+.-+||.++++++.+++++|+++|+|+.|||+||+++++...|...
T Consensus        45 ~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~   96 (349)
T 1u19_A           45 MFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL   96 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHH
Confidence            3334455567999999999999999999999999999999999998888654

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=97.67  E-value=1.9e-05  Score=76.15  Aligned_cols=51  Identities=41%  Similarity=0.659  Sum_probs=44.3

Q ss_pred             HhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEE
Q psy6269         258 LSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVA  308 (366)
Q Consensus       258 ~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~  308 (366)
                      +-.++.-+||+++++++.+.+++|+++|+||.|||+||++++++.+|+...
T Consensus        30 ~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~   80 (488)
T 3eml_A           30 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT   80 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555679999999999999999999999999999999999999986543

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=97.66  E-value=1.9e-05  Score=75.70  Aligned_cols=53  Identities=34%  Similarity=0.614  Sum_probs=45.1

Q ss_pred             HHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         255 LGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       255 l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      +..+-.++.-+||.++++++.+.+++|+++|+||.|||+||++++++..|+..
T Consensus        29 ~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~   81 (467)
T 3uon_A           29 VAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYT   81 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344456667999999999999999999999999999999999999888643

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=97.65  E-value=2.1e-05  Score=75.32  Aligned_cols=57  Identities=28%  Similarity=0.470  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         250 NSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       250 ~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      .+...+..+-..+.-+||+++++++.+++++|+++|+|++|||+||++++++ +|+..
T Consensus        18 ~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~   74 (464)
T 4dkl_A           18 ITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQS   74 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            3344444555667778999999999999999999999999999999999887 77643

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=97.63  E-value=2.4e-05  Score=75.54  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceE
Q psy6269         248 LSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA  306 (366)
Q Consensus       248 ~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  306 (366)
                      ...+...+..+-.++.-+||.++++++.+++++|+++|+||.|||+||++++++ +|+.
T Consensus        19 ~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~   76 (484)
T 3vw7_A           19 LTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFK   76 (484)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            333444444455567778999999999999999999999999999999999765 4443

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=97.63  E-value=1.2e-05  Score=76.95  Aligned_cols=65  Identities=28%  Similarity=0.403  Sum_probs=49.3

Q ss_pred             hhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeeccccchhHHHHHHH
Q psy6269         259 SGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHITVPRSDFRLAFWR  324 (366)
Q Consensus       259 ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~~~~~~~fR~~~~~  324 (366)
                      -.++.-+||.++++++.+++++|+++|+||.|||+||++++++.+|+....... .++.|.....+
T Consensus        18 ~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~-~~~~~~~~~C~   82 (452)
T 3rze_A           18 ICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM-SKWSLGRPLCL   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHS-SSCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCchhHh
Confidence            344556699999999999999999999999999999999999888876443211 23444444444

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=97.59  E-value=2.3e-05  Score=76.74  Aligned_cols=59  Identities=37%  Similarity=0.548  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         249 SNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       249 ~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      ..+...+..+-.++.-+||.++++++.+.+++|+++|+||.|||+||++++++.+|+..
T Consensus       182 ~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~  240 (514)
T 3sn6_R          182 VVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA  240 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            33344445555667778999999999999999999999999999999999998888643

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=97.57  E-value=5.4e-05  Score=72.48  Aligned_cols=59  Identities=25%  Similarity=0.401  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhc-cceE
Q psy6269         248 LSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFV-MPFA  306 (366)
Q Consensus       248 ~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i  306 (366)
                      ...+...+..+-.++.-+||.++++++.+.|++|+++|+|+.|||+||++++++. +|+.
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~   92 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM   92 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHH
Confidence            3444444455556667789999999999999999999999999999999998874 6654

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=97.50  E-value=3.2e-05  Score=74.51  Aligned_cols=44  Identities=55%  Similarity=0.834  Sum_probs=40.6

Q ss_pred             cccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       264 P~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      -+||.++++++.+++++|+++|+||.|||+||++++++.+|+..
T Consensus        53 ~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~   96 (481)
T 3pbl_A           53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVV   96 (481)
T ss_dssp             HHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-07

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 264 LFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFA 306
              N L +   +  ++LRT  N  +++LAVAD  +        
Sbjct: 52  FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	97.85

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=5e-28  Score=224.42  Aligned_cols=212  Identities=21%  Similarity=0.408  Sum_probs=171.6

Q ss_pred             CccccccchhHHhHHHHHHHHHHHHHHHHHHHhhhhhhhccCccCccccchhhHHHHHHHHHHHHHHHhhhhhhhccccC
Q psy6269           1 SWEFGWILCDIWVSLDVCLCTASILSLCAISIDRYLAVTQPLTYSRKTRSKKLALYMILCVWVLALVITCPPILGWYDKD   80 (366)
Q Consensus         1 ~W~~g~~~C~~~~~l~~~~~~~S~~~l~~IaidRY~aV~~Pl~y~~~~~t~~~a~~~i~~~Wi~s~l~~~p~~~~~~~~~   80 (366)
                      +|..|+..|+...++...+..+|.++++++++|||++|++|++|+..  ++++....++++|.+++++.+|+.+++....
T Consensus       102 ~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (348)
T d1u19a_         102 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF--GENHAIMGVAFTWVMALACAAPPLVGWSRYI  179 (348)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC--CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCE
T ss_pred             ccccCchhhhhhhhccccceeeecchhhhhhcccceeeecccccccc--ccccccccceeeehhhhheecccccccceec
Confidence            48889999999999999999999999999999999999999997654  5666777888899999999999888763332


Q ss_pred             C-CCCCccccc--------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhhHhHhhhhc
Q psy6269          81 R-HRDKRCGYN--------QNRGYVVFSGMGSFFIPLLVVLYVYARISCVIARRHNNLEALNHQHTLGRHELAKIKLRVR  151 (366)
Q Consensus        81 ~-~~~~~C~~~--------~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (366)
                      . .+...|...        ....+..+...+.+++|+++++++|.+|.++++++.++.                      
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~----------------------  237 (348)
T d1u19a_         180 PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ----------------------  237 (348)
T ss_dssp             EETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSS----------------------
T ss_pred             cCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc----------------------
Confidence            2 233344322        122355566777789999999999999987765543211                      


Q ss_pred             ccccceeeeccccccCCCCcccccccccccccccccccccCCccccccccchhhhhhHHHHHHHHHHHHHHHHhchhHHH
Q psy6269         152 FNYCKVIIIKKTHLVLPSSSIMERDRRKSLASCSFSLQRSGLRLTDKCTRVSSLKRESKTAQTLSVVVGGFIACWLPFFI  231 (366)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~vcwlP~~i  231 (366)
                                                                     .......++|+|++|++++++++|++||+|+.+
T Consensus       238 -----------------------------------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i  270 (348)
T d1u19a_         238 -----------------------------------------------QESATTQKAEKEVTRMVIIMVIAFLICWLPYAG  270 (348)
T ss_dssp             -----------------------------------------------CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------chhhhhHHHHhhHhheEEEeehHHHHHhhHHHh
Confidence                                                           112234577899999999999999999999999


Q ss_pred             HHHHhhhCCCCCCChHHHHHHHHHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEEEeec
Q psy6269         232 VYLANPFLPAGTISPLLSNSLTWLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAVALHI  311 (366)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~~~~  311 (366)
                      ..++....+..+.......+..+++++|+++||+                                        +|++  
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPi----------------------------------------IY~~--  308 (348)
T d1u19a_         271 VAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV----------------------------------------IYIM--  308 (348)
T ss_dssp             HHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHH----------------------------------------HHHH--
T ss_pred             hhheeeccCCccccHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHh--
Confidence            9988877777777777888889999999999999                                        9999  


Q ss_pred             cccchhHHHHHHHHhh
Q psy6269         312 TVPRSDFRLAFWRLTL  327 (366)
Q Consensus       312 ~~~~~~fR~~~~~~~~  327 (366)
                        ++++||++++++++
T Consensus       309 --~~~~fR~~~~~~l~  322 (348)
T d1u19a_         309 --MNKQFRNCMVTTLC  322 (348)
T ss_dssp             --TCHHHHHHHHHHHT
T ss_pred             --cCHHHHHHHHHHhC
Confidence              99999999999984

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=4e-06  Score=75.10  Aligned_cols=54  Identities=24%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             HHHHHhhhhccccchhhhhhhhhccccccchhhHHHHHHHHHHHhhhhccceEE
Q psy6269         254 WLGKLSGSLRLFGNTLIIISVLTTRRLRTVTNCFVMSLAVADWLVGIFVMPFAV  307 (366)
Q Consensus       254 ~l~~~ns~vNP~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy  307 (366)
                      .+..+-..+.-+||.++++++.++|++|++.|++++|||+||++++++..|+..
T Consensus        42 ~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~   95 (348)
T d1u19a_          42 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL   95 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333456677999999999999999999999999999999999998888643