Psyllid ID: psy6288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFEDK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccccccccEEEEccccccccccccccHHHHHHHHHcccccccccEEEEEccHHHHHHHHHcccEEEEEccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEEEcccccHEEEEcccHHHHHHHccEEEEccccHHHcccccccHHHHHHHHHcccccccccEEEEEccccHHHHHHHcccEEEEEccccccHHHHHHHHHHHHcHHHccHHHccccccccc
Coil and Loop (DISEMBL)
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVlgsadpevkqgkpapdVFLVAAkrfdekpqpskclvfedapngvlgakaagmscvmvpdptvpkhrTEAADLVLNSLEefkpelyglppfedk
Flexible Loop (DISEMBL)
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGsadpevkqgkpAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLeefkpelyglppfedk
Low Complexity Region (SEG)
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFEDK
Disordered region (IsUnstruct)
****QVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATS*************KDTLKLFHHVVLGS************DVFLVAAKRF*******KCLVFEDAPNGVLGAKAAGMSCVMVPD**********ADLVLNSL****************
Disordered Region (DISOPRED)
*NISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFE**
Disordered Region (DISEMBL)
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFEDK
Disordered Region (DISPRO)
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFEDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q08623	228	Pseudouridine-5'-monophos	no	N/A	0.813	0.592	0.617	1e-41
Q94529	231	Probable pseudouridine-5'	yes	N/A	0.873	0.627	0.547	2e-40
Q9D5U5	234	Pseudouridine-5'-monophos	yes	N/A	0.819	0.581	0.569	9e-37
O59760	236	Putative uncharacterized	yes	N/A	0.644	0.453	0.367	7e-14
O14165	249	Uncharacterized protein C	no	N/A	0.777	0.518	0.330	1e-13
Q86ZR7	236	Putative uncharacterized	yes	N/A	0.710	0.5	0.366	1e-11
P77625	216	Sugar phosphatase YfbT OS	N/A	N/A	0.662	0.509	0.393	2e-11
P54607	220	Uncharacterized protein Y	yes	N/A	0.560	0.422	0.381	5e-09
P77475	188	Fructose-1-phosphate phos	N/A	N/A	0.493	0.436	0.409	1e-07
O33513	227	Protein CbbY OS=Rhodobact	no	N/A	0.704	0.515	0.306	3e-07

>sp|Q08623|HDHD1_HUMAN Pseudouridine-5'-monophosphatase OS=Homo sapiens GN=HDHD1 PE=1 SV=3

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 1/136 (0%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA +LI HL KH IPFA+ATSS   SF++KTSRHK+   LF H+VLG  DPEV+ GKP P
Sbjct: 94  GAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDP 152

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+FL  AKRF   P   KCLVFEDAPNGV  A AAGM  VMVPD  + +  T  A LVLN
Sbjct: 153 DIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 212

Query: 149 SLEEFKPELYGLPPFE 164
           SL++F+PEL+GLP +E
Sbjct: 213 SLQDFQPELFGLPSYE 228

Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation. Pseudouridine is then excreted intact in urine.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: nEC: 6

>sp|Q94529|GS1_DROME Probable pseudouridine-5'-monophosphatase OS=Drosophila melanogaster GN=Gs1l PE=2 SV=2

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 101/146 (69%)

Query: 20  LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP 79
           L+    L  GA RL+ HLH + +PF +ATSS  +  ELKT++H++   LF+H V GS+D 
Sbjct: 86  LMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDK 145

Query: 80  EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR 139
           EV  GKPAPD+FLVAA RF   P+PS CLVFED+PNGV  A +AGM  VMVPDP + + +
Sbjct: 146 EVVNGKPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPRLSQEK 205

Query: 140 TEAADLVLNSLEEFKPELYGLPPFED 165
           T  A  VL SL +FKPE +GLP F D
Sbjct: 206 TSHATQVLASLADFKPEQFGLPAFTD 231

Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: n

EC: 6

>sp|Q9D5U5|HDHD1_MOUSE Pseudouridine-5'-monophosphatase OS=Mus musculus GN=Hdhd1 PE=2 SV=1

 Score =  152 bits (384), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA  LI+HL KH +PFA+ATSS   +F+ KTSRH     LFHH+VLG  DPEVK GKP  
Sbjct: 99  GAEELIHHLKKHRLPFALATSSETVTFQTKTSRHTGFFGLFHHIVLGD-DPEVKNGKPGM 157

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+FL  AKRF   P P  CLVFED+PNGV  A   GM  VMVP   +    T  A LVL+
Sbjct: 158 DIFLTCAKRFSPPPDPKDCLVFEDSPNGVEAAIHCGMQVVMVPHENLSADLTRKATLVLS 217

Query: 149 SLEEFKPELYGLPPFED 165
           SL +FKPEL+GLP F +
Sbjct: 218 SLHDFKPELFGLPAFTE 234

Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation. Pseudouridine is then excreted intact in urine.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: n

EC: 6

>sp|O59760|YJM7_SCHPO Putative uncharacterized hydrolase C1020.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1020.07 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 10/117 (8%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE--VKQGKP 86
           G + L++ L   NIP A+ATSS   +FE K++        F   ++   DP   V +GKP
Sbjct: 90  GVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHFDGNIITGDDPRLPVGRGKP 149

Query: 87  APDVFLVAAKRFDEKPQ--------PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTV 135
            PD++ +A K  ++K +        P  CLVFED+  GV   +AAGM  V VPD  +
Sbjct: 150 HPDIWFIALKMINDKRKAQGQAEILPENCLVFEDSITGVQSGRAAGMKVVWVPDVNI 206

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O14165|YDX1_SCHPO Uncharacterized protein C4C5.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4C5.01 PE=3 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 10/139 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVK--QGKP 86
           GA  LIN+L  H I   +ATSS   ++ +KT+  K   + F   V+   +P +   +GKP
Sbjct: 95  GAESLINNLSNHGIDIGLATSSNTANYNMKTAHLKHIFEKFGKNVITGDNPSIAPGRGKP 154

Query: 87  APDVFLVAAKRFDEKPQ--------PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH 138
            PD++L      +E  +        PS+C+ FED+  GV  AKAAGM  + VPD  +   
Sbjct: 155 FPDIWLKVLNLINESRKQRGLKALTPSQCIAFEDSIPGVKSAKAAGMHVIWVPDAAIKNL 214

Query: 139 RTEAADLVLNSLEEFKPEL 157
             +  + +++S  E  P L
Sbjct: 215 VGDQLNEIVDSQCETLPSL 233

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q86ZR7|YKD3A_YEAST Putative uncharacterized hydrolase YKL033W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL033W-A PE=1 SV=2

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 13/131 (9%)

Query: 42  IPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVK--QGKPAPDVFLVAAKRFD 99
           IP A+ TSS K  F  KTS  ++   LF  +V G  DP +   +GKP PD++ +  K  +
Sbjct: 107 IPIALCTSSNKTKFRGKTSHLEEGFDLFDTIVTGD-DPRIAKGRGKPFPDIWQLGLKELN 165

Query: 100 EK----PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADL------VLNS 149
           EK     +P +C+VFED   GV  AKA G   + VP P       +   L      +L+S
Sbjct: 166 EKFHTDIKPDECIVFEDGIPGVKSAKAFGAHVIWVPHPEAHAVLGDTEALLAGKGELLSS 225

Query: 150 LEEFKPELYGL 160
           LE+ +   YGL
Sbjct: 226 LEKLEMSKYGL 236

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P77625|YFBT_ECOLI Sugar phosphatase YfbT OS=Escherichia coli (strain K12) GN=yfbT PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 22/132 (16%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV------- 81
           GA+ L++HL+K  IP+AI TS    S  +  +RHK         + G   PEV       
Sbjct: 87  GAIALLSHLNKAGIPWAIVTSG---SMPVARARHK---------IAGLPAPEVFVTAERV 134

Query: 82  KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE 141
           K+GKP PD +L+ A+     PQ  +C+V EDAP GVL   AAG   + V  P     R  
Sbjct: 135 KRGKPEPDAYLLGAQLLGLAPQ--ECVVVEDAPAGVLSGLAAGCHVIAVNAPA-DTPRLN 191

Query: 142 AADLVLNSLEEF 153
             DLVL+SLE+ 
Sbjct: 192 EVDLVLHSLEQI 203

Catalyzes the dephosphorylation of different sugar phosphates including ribose-5-phosphate (Ribu5P), fructose-1-phosphate (Fru1P), fructose-6-phosphate (Fru6P), glucose-6-phosphate (Glu6P). Selectively hydrolyzes beta-D-glucose-1-phosphate (bGlu1P) and has no activity with the alpha form.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 3

>sp|P54607|YHCW_BACSU Uncharacterized protein YhcW OS=Bacillus subtilis (strain 168) GN=yhcW PE=3 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 59  TSRHKDTLKLFHHV-VLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGV 117
            S H   + LF    V+ +AD +V++ KP P+++L+AAK       P++CL FED+ NG 
Sbjct: 115 VSGHLKQIGLFDDFEVIQTAD-DVEEVKPNPELYLLAAKNLG--VSPAECLAFEDSVNGS 171

Query: 118 LGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFK 154
           + AK AGM CV+VP+        E  D  L S+ E +
Sbjct: 172 IAAKRAGMKCVIVPNKVTGTLMFEDYDHRLESMAEME 208

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P77475|YQAB_ECOLI Fructose-1-phosphate phosphatase YqaB OS=Escherichia coli (strain K12) GN=yqaB PE=1 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 43  PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102
           P A+ T S     E   +     L L H+     A   VK  KPAPD FL+ A+R     
Sbjct: 104 PMAVGTGSESAIAEALLAH----LGLRHYFDAVVAADHVKHHKPAPDTFLLCAQRM--GV 157

Query: 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           QP++C+VFEDA  G+  A+AAGM  V V
Sbjct: 158 QPTQCVVFEDADFGIQAARAAGMDAVDV 185

Catalyzes strongly the dephosphorylation of fructose-1-phosphate (Fru1P) and slightly the dephosphorylation of 6-phosphogluconate (6P-Glu). It has low beta-phosphoglucomutase activity.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFE--LKTSRHKDTLKLFHHVVLGSADPEVKQGKP 86
           G   LI+      +  AIAT++ + + +  +  +  K    +F  +  G    EV Q KP
Sbjct: 97  GVAELIDRAKASGLRLAIATTTTRANVDALIAATFSKPAGDIFEVIAAGD---EVAQKKP 153

Query: 87  APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV 146
           APDV+L A +       P+ CL FED+  G+  A+AAG+  V+ P          AAD  
Sbjct: 154 APDVYLRALQGL--GLPPAACLAFEDSRAGLASARAAGLRVVLTPSEYTRGDDFSAADWR 211

Query: 147 LNSL 150
           +  L
Sbjct: 212 IPDL 215

Rhodobacter capsulatus (taxid: 1061)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
328782040	231	PREDICTED: pseudouridine-5'-monophosphat	0.837	0.601	0.640	2e-45
328782042	211	PREDICTED: pseudouridine-5'-monophosphat	0.837	0.658	0.640	3e-45
332860237	185	PREDICTED: pseudouridine-5'-monophosphat	0.927	0.832	0.553	3e-45
383863021	231	PREDICTED: pseudouridine-5'-monophosphat	0.837	0.601	0.633	3e-45
332030576	231	Haloacid dehalogenase-like hydrolase dom	0.819	0.588	0.647	4e-45
380019834	231	PREDICTED: pseudouridine-5'-monophosphat	0.837	0.601	0.633	5e-45
157167925	577	2-deoxyglucose-6-phosphate phosphatase [	0.939	0.270	0.551	1e-44
340719944	231	PREDICTED: pseudouridine-5'-monophosphat	0.837	0.601	0.625	2e-44
426395072	185	PREDICTED: pseudouridine-5'-monophosphat	0.927	0.832	0.547	3e-44
327268180	216	PREDICTED: pseudouridine-5'-monophosphat	0.813	0.625	0.639	4e-44

>gi|328782040|ref|XP_001121475.2| PREDICTED: pseudouridine-5'-monophosphatase-like isoform 1 [Apis mellifera]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 106/139 (76%)

Query: 25  NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
           NL  GA +L+ HL ++NIP A+ATSS KE+FELKT R K+   LF+H VLG +DP+V  G
Sbjct: 91  NLMPGAEQLLQHLKQNNIPIALATSSNKENFELKTQRWKNIFDLFNHKVLGGSDPDVING 150

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD 144
           KPAPD+FL AAKRF + P PSKCLVFEDAPNGV  A  AGM  VMVPDP +P H  E   
Sbjct: 151 KPAPDIFLTAAKRFIDNPDPSKCLVFEDAPNGVKAAFNAGMQVVMVPDPMLPNHYIENPT 210

Query: 145 LVLNSLEEFKPELYGLPPF 163
           L+LNSLEEF+PEL+GLPP+
Sbjct: 211 LILNSLEEFQPELFGLPPY 229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782042|ref|XP_003250074.1| PREDICTED: pseudouridine-5'-monophosphatase-like isoform 2 [Apis mellifera]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 106/139 (76%)

Query: 25  NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
           NL  GA +L+ HL ++NIP A+ATSS KE+FELKT R K+   LF+H VLG +DP+V  G
Sbjct: 71  NLMPGAEQLLQHLKQNNIPIALATSSNKENFELKTQRWKNIFDLFNHKVLGGSDPDVING 130

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD 144
           KPAPD+FL AAKRF + P PSKCLVFEDAPNGV  A  AGM  VMVPDP +P H  E   
Sbjct: 131 KPAPDIFLTAAKRFIDNPDPSKCLVFEDAPNGVKAAFNAGMQVVMVPDPMLPNHYIENPT 190

Query: 145 LVLNSLEEFKPELYGLPPF 163
           L+LNSLEEF+PEL+GLPP+
Sbjct: 191 LILNSLEEFQPELFGLPPY 209

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332860237|ref|XP_520917.3| PREDICTED: pseudouridine-5'-monophosphatase [Pan troglodytes]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 116/179 (64%), Gaps = 25/179 (13%)

Query: 10  VTHVIFDMDGLLLGYNLAI------------------------GALRLINHLHKHNIPFA 45
           VTH+IFDMDGLLLGY  +I                        GA +LI HL KH IPFA
Sbjct: 8   VTHLIFDMDGLLLGYTGSIVAAASGESSRGLQSRWKVLPSSSPGAEKLIIHLRKHGIPFA 67

Query: 46  IATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105
           +ATSS   SF++KTSRHK+   LF H+VLG  DPEV+ GKP PD+FL  AKRF   P   
Sbjct: 68  LATSSGSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDPDIFLACAKRFSPPPAME 126

Query: 106 KCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFE 164
           KCLVFEDAPNGV  A AAGM  VMVPD  + +  T  A LVLNSL++F+PEL+GLP +E
Sbjct: 127 KCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 185

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383863021|ref|XP_003706981.1| PREDICTED: pseudouridine-5'-monophosphatase-like [Megachile rotundata]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 106/139 (76%)

Query: 25  NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
           NL  GA RL+ HL +HN+PFA+ATSS KE+F LKT R      LF+H VLG +DP+V  G
Sbjct: 91  NLMPGAERLLRHLKEHNVPFALATSSNKENFALKTQRWTHVFDLFNHKVLGGSDPDVADG 150

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD 144
           KPAPD+FLVAAKRF + P PS CLVFEDAPNGV  A +AGM  VMVPDP +PK+  E   
Sbjct: 151 KPAPDIFLVAAKRFSDNPDPSMCLVFEDAPNGVKAALSAGMQVVMVPDPMLPKNYIENPT 210

Query: 145 LVLNSLEEFKPELYGLPPF 163
           LV+NSLEEF+PE++GLPP+
Sbjct: 211 LVINSLEEFQPEVFGLPPY 229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030576|gb|EGI70264.1| Haloacid dehalogenase-like hydrolase domain-containing protein 1A [Acromyrmex echinatior]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/136 (64%), Positives = 106/136 (77%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA+RL+ HL K+NIP A+ATSS +E++ELKTSR  D  +LFHH VLG +DPEV  GKP P
Sbjct: 95  GAVRLLKHLKKNNIPIALATSSDQENYELKTSRWHDLFELFHHKVLGGSDPEVVHGKPEP 154

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+F +AAKRF   P PSKCLVFEDAPNGV  A +AGM  VMVPDP +PK  T  A LVL+
Sbjct: 155 DIFFIAAKRFPNNPDPSKCLVFEDAPNGVKAALSAGMQVVMVPDPMLPKRYTTEATLVLD 214

Query: 149 SLEEFKPELYGLPPFE 164
           SLE+F+PE +GLPP+E
Sbjct: 215 SLEKFEPEKFGLPPYE 230

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019834|ref|XP_003693806.1| PREDICTED: pseudouridine-5'-monophosphatase-like [Apis florea]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 106/139 (76%)

Query: 25  NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
           NL  GA +L+ HL ++NIP A+ATSS KE+FELKT R K+   LF+H VLG +DP+V  G
Sbjct: 91  NLMPGAEQLLQHLKQNNIPIALATSSNKENFELKTQRWKNIFDLFNHKVLGGSDPDVING 150

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD 144
           KPAPD+FL+AAKRF + P PSKCLVFEDAPNGV  A  AGM  VM+PDP +P H  E   
Sbjct: 151 KPAPDIFLIAAKRFIDNPDPSKCLVFEDAPNGVKAAFNAGMQVVMIPDPMLPNHYIENPT 210

Query: 145 LVLNSLEEFKPELYGLPPF 163
           L LNSLEEF+PEL+GLPP+
Sbjct: 211 LKLNSLEEFQPELFGLPPY 229

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167925|ref|XP_001662906.1| 2-deoxyglucose-6-phosphate phosphatase [Aedes aegypti] gi|108881523|gb|EAT45748.1| AAEL003006-PA [Aedes aegypti]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 114/156 (73%)

Query: 9   YVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL 68
           YV      ++ L+    +  GA RL+ HLH++NIP A+ATSS  +S ++KT  H++  +L
Sbjct: 422 YVRISTEKINQLMGNCKMMPGAERLVRHLHQNNIPIAVATSSGADSVKVKTKNHQEVFEL 481

Query: 69  FHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128
           FHH V+GS+D EVK+GKPAPD+FLVAA RF +KP P +CLVFEDAPNGV    +AGM  V
Sbjct: 482 FHHKVMGSSDAEVKEGKPAPDIFLVAASRFPDKPSPDQCLVFEDAPNGVTAGVSAGMQVV 541

Query: 129 MVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFE 164
           MVPDP V + + + A +VLNSLEEF+PEL+GLP F+
Sbjct: 542 MVPDPNVNEDQRKHATVVLNSLEEFQPELFGLPAFK 577

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719944|ref|XP_003398404.1| PREDICTED: pseudouridine-5'-monophosphatase-like [Bombus terrestris]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/139 (62%), Positives = 105/139 (75%)

Query: 25  NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
           N+  GA RL+ HL ++NIP A+ATSS KE+FELKT R K    LF H VLG +D EV  G
Sbjct: 91  NMMPGAERLLKHLKQNNIPIALATSSNKENFELKTQRWKHIFDLFSHKVLGGSDSEVTNG 150

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD 144
           KPAPD+FL+AAKRF + P PSKCLVFEDAPNGV  A  AGM  VMVPDP +PK+  +   
Sbjct: 151 KPAPDIFLIAAKRFSDNPDPSKCLVFEDAPNGVKAALTAGMQVVMVPDPMLPKNYIKNPT 210

Query: 145 LVLNSLEEFKPELYGLPPF 163
           L+LNSLE+F+PEL+GLPP+
Sbjct: 211 LILNSLEKFQPELFGLPPY 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|426395072|ref|XP_004063802.1| PREDICTED: pseudouridine-5'-monophosphatase isoform 3 [Gorilla gorilla gorilla]

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 116/179 (64%), Gaps = 25/179 (13%)

Query: 10  VTHVIFDMDGLLLGY------------------------NLAIGALRLINHLHKHNIPFA 45
           VTH+IFDMDGLLL                          +L +GA +LI HL KH IPFA
Sbjct: 8   VTHLIFDMDGLLLDTERLYSVVFQEICDRYDKKYSWDVKSLVMGAEKLIIHLRKHGIPFA 67

Query: 46  IATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105
           +ATSS   SF++KTSRHK+   LF H+VLG  DPEV+ GKP PD+FL  AKRF   P   
Sbjct: 68  LATSSGSVSFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDPDIFLACAKRFSPPPAME 126

Query: 106 KCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFE 164
           KCLVFEDAPNGV  A AAGM  VMVPD  + +  T  A LVLNSL++F+PEL+GLPP+E
Sbjct: 127 KCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPPYE 185

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327268180|ref|XP_003218876.1| PREDICTED: pseudouridine-5'-monophosphatase-like [Anolis carolinensis]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/136 (63%), Positives = 105/136 (77%), Gaps = 1/136 (0%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G  +LI HLH+HNIP A+ATSS++ +FE+KTSRHKD   LFHH+VLG  DPEVK GKP P
Sbjct: 82  GVEKLIRHLHQHNIPIAVATSSSRVTFEMKTSRHKDFFNLFHHIVLGD-DPEVKDGKPQP 140

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           DVF+V AKRF+  P P KCLVFEDAPNGV  +  AGM  VM+PD  + K  T+ A LVL+
Sbjct: 141 DVFIVCAKRFNPPPLPEKCLVFEDAPNGVKASLTAGMQVVMIPDENLDKELTKEATLVLH 200

Query: 149 SLEEFKPELYGLPPFE 164
           S+ EFKPEL+GLPPF+
Sbjct: 201 SMNEFKPELFGLPPFD 216

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
UNIPROTKB|Q08623	228	HDHD1 "Pseudouridine-5'-monoph	0.813	0.592	0.617	4.1e-45
UNIPROTKB|Q2KJ86	231	HDHD1A "Haloacid dehalogenase-	0.813	0.584	0.602	8.6e-45
ZFIN|ZDB-GENE-050522-36	226	hdhd1 "haloacid dehalogenase-l	0.831	0.610	0.568	1.8e-44
TAIR|locus:2174567	240	GS1 [Arabidopsis thaliana (tax	0.819	0.566	0.594	5.2e-43
RGD|1305101	234	Hdhd1 "haloacid dehalogenase-l	0.819	0.581	0.591	1.4e-42
UNIPROTKB|E1BRK1	214	HDHD1 "Uncharacterized protein	0.813	0.630	0.617	8.4e-42
TAIR|locus:2117512	298	GPP1 "glycerol-3-phosphatase 1	0.843	0.469	0.549	1.7e-40
UNIPROTKB|E2R8L4	233	HDHD1 "Uncharacterized protein	0.807	0.575	0.6	4.2e-40
MGI|MGI:1914615	234	Hdhd1a "haloacid dehalogenase-	0.819	0.581	0.569	1.2e-39
FB|FBgn0019982	231	Gs1l "GS1-like" [Drosophila me	0.879	0.632	0.547	1.3e-38

UNIPROTKB|Q08623 HDHD1 "Pseudouridine-5'-monophosphatase" [Homo sapiens (taxid:9606)]

 Score = 428 (155.7 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 84/136 (61%), Positives = 99/136 (72%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             GA +LI HL KH IPFA+ATSS   SF++KTSRHK+   LF H+VLG  DPEV+ GKP P
Sbjct:    94 GAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDP 152

Query:    89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
             D+FL  AKRF   P   KCLVFEDAPNGV  A AAGM  VMVPD  + +  T  A LVLN
Sbjct:   153 DIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 212

Query:   149 SLEEFKPELYGLPPFE 164
             SL++F+PEL+GLP +E
Sbjct:   213 SLQDFQPELFGLPSYE 228

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q2KJ86 HDHD1A "Haloacid dehalogenase-like hydrolase domain containing 1A" [Bos taurus (taxid:9913)]

 Score = 427 (155.4 bits), Expect = 8.6e-45, Sum P(2) = 8.6e-45
 Identities = 82/136 (60%), Positives = 99/136 (72%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             G  +LI HL KH++P A+ATSS   SF+LKTSRH+D   LFHHVVLG  DPEV+ GKP P
Sbjct:    97 GVEKLIRHLRKHDVPCAVATSSGTASFQLKTSRHQDFFGLFHHVVLGD-DPEVRSGKPEP 155

Query:    89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
             D+FL  A+RF   P  +KCLVFEDAPNGV  A AAGM  VMVPD  +    T  A LVL 
Sbjct:   156 DIFLTCARRFSPAPPANKCLVFEDAPNGVEAALAAGMQVVMVPDGNLKPDLTSKATLVLG 215

Query:   149 SLEEFKPELYGLPPFE 164
             SL++F+PEL+GLPP++
Sbjct:   216 SLQDFQPELFGLPPYD 231

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-050522-36 hdhd1 "haloacid dehalogenase-like hydrolase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 421 (153.3 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 79/139 (56%), Positives = 99/139 (71%)

Query:    25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
             +L  G  +L+NHLHKH IP A+ TSSA  +FE+KTSRHK+   LF H+VLG  DP+VK G
Sbjct:    88 SLLPGVEKLVNHLHKHGIPIAVGTSSAGLTFEMKTSRHKEFFSLFSHIVLGD-DPDVKNG 146

Query:    85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD 144
             KP PD FLV AKRF     P +CLVFEDAPNGV    AAGM  VM+PD  + +  T+ A 
Sbjct:   147 KPLPDTFLVCAKRFSPPANPKQCLVFEDAPNGVKAGLAAGMQVVMIPDDNLDRSLTQEAT 206

Query:   145 LVLNSLEEFKPELYGLPPF 163
             L+L S+E+F+PEL+GLP +
Sbjct:   207 LLLRSMEDFRPELFGLPAY 225

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2174567 GS1 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 82/138 (59%), Positives = 97/138 (70%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             GA RLI HLH  NIP  IAT +    ++LKT RH++   L HHVV G  DPEVKQGKPAP
Sbjct:   102 GASRLIKHLHVKNIPICIATGTHTRHYDLKTQRHRELFSLMHHVVRGD-DPEVKQGKPAP 160

Query:    89 DVFLVAAKRFDEKPQPS-KCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
             D FL AA+RF + P  S K LVFEDAP+GVL AK AGM+ VMVPDP +     + AD ++
Sbjct:   161 DGFLAAARRFKDGPVDSQKVLVFEDAPSGVLAAKNAGMNVVMVPDPRLDISHQDVADQII 220

Query:   148 NSLEEFKPELYGLPPFED 165
              SL +FKPE +GLPPFED
Sbjct:   221 TSLVDFKPEEWGLPPFED 238

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

RGD|1305101 Hdhd1 "haloacid dehalogenase-like hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 81/137 (59%), Positives = 95/137 (69%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             GA  LI+HL K+ +PFA+ATSSA  SF+ KTSR+K    LFHH+VLG  DPEV   KPAP
Sbjct:    99 GAEELIHHLRKNRLPFALATSSATLSFQTKTSRYKGFFSLFHHIVLGD-DPEVINSKPAP 157

Query:    89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
             D+FL  AKRF   P P  CLVFED+PNGV  A A GM  VMVP   +    T  A LVL+
Sbjct:   158 DIFLTCAKRFSPPPNPEDCLVFEDSPNGVEAAVACGMQVVMVPHENLSSDLTTKATLVLS 217

Query:   149 SLEEFKPELYGLPPFED 165
             SL EFKPEL+GLP F++
Sbjct:   218 SLHEFKPELFGLPAFDE 234

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E1BRK1 HDHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 84/136 (61%), Positives = 102/136 (75%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             G  +LI HLHKHNIP A+ATSSA+ +F++KTSRHKD   LFHH+VLG  DPEVK GKP P
Sbjct:    80 GVNKLIQHLHKHNIPIAVATSSAEVTFQMKTSRHKDFFNLFHHIVLGD-DPEVKGGKPQP 138

Query:    89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
             D FLV AKRF     P KCLVFED+P GV GA AAGM  VM+PD  +  +  + A L+LN
Sbjct:   139 DAFLVCAKRFHPPAPPEKCLVFEDSPLGVKGALAAGMQVVMIPDENLSPNLKKEATLLLN 198

Query:   149 SLEEFKPELYGLPPFE 164
             S+E+FKPEL+GLP ++
Sbjct:   199 SMEDFKPELFGLPAYD 214

GO:0016787 "hydrolase activity" evidence=IEA

TAIR|locus:2117512 GPP1 "glycerol-3-phosphatase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 78/142 (54%), Positives = 96/142 (67%)

Query:    25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
             +L  GA RL+ HLH   IP  IAT +    F+LKT RH++   L HHVV G  DPEVK+G
Sbjct:   155 DLMPGASRLLRHLHGKGIPICIATGTHTRHFDLKTQRHRELFSLMHHVVRGD-DPEVKEG 213

Query:    85 KPAPDVFLVAAKRFDEKP-QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAA 143
             KPAPD FL A++RF++ P  P K LVFEDAP+GV  AK AGM+ +MVPD  + K     A
Sbjct:   214 KPAPDGFLAASRRFEDGPVDPRKVLVFEDAPSGVQAAKNAGMNVIMVPDSRLDKSYCNVA 273

Query:   144 DLVLNSLEEFKPELYGLPPFED 165
             D VL SL +FKPE +GLP F+D
Sbjct:   274 DQVLASLLDFKPEEWGLPSFQD 295

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

UNIPROTKB|E2R8L4 HDHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 81/135 (60%), Positives = 100/135 (74%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             G  +LI+HL +H +P A+ATSS+  SFE+KTSRHK+   LF H+VLG  DPEVK GKP P
Sbjct:    99 GVEKLIHHLREHGVPLAVATSSSLLSFEMKTSRHKEFFSLFDHIVLGD-DPEVKNGKPDP 157

Query:    89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
             D+FL  AKRF   P   KCLVFEDAPNGV  A AAGM  VMVPD  + +H T  A +VL+
Sbjct:   158 DIFLACAKRFSPPPPMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLQRHLTSKATVVLD 217

Query:   149 SLEEFKPELYGLPPF 163
             SL++F+PEL+GLPP+
Sbjct:   218 SLQDFQPELFGLPPY 232

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1914615 Hdhd1a "haloacid dehalogenase-like hydrolase domain containing 1A" [Mus musculus (taxid:10090)]

 Score = 391 (142.7 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 78/137 (56%), Positives = 91/137 (66%)

Query:    29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             GA  LI+HL KH +PFA+ATSS   +F+ KTSRH     LFHH+VLG  DPEVK GKP  
Sbjct:    99 GAEELIHHLKKHRLPFALATSSETVTFQTKTSRHTGFFGLFHHIVLGD-DPEVKNGKPGM 157

Query:    89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
             D+FL  AKRF   P P  CLVFED+PNGV  A   GM  VMVP   +    T  A LVL+
Sbjct:   158 DIFLTCAKRFSPPPDPKDCLVFEDSPNGVEAAIHCGMQVVMVPHENLSADLTRKATLVLS 217

Query:   149 SLEEFKPELYGLPPFED 165
             SL +FKPEL+GLP F +
Sbjct:   218 SLHDFKPELFGLPAFTE 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0019982 Gs1l "GS1-like" [Drosophila melanogaster (taxid:7227)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 80/146 (54%), Positives = 101/146 (69%)

Query:    20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP 79
             L+    L  GA RL+ HLH + +PF +ATSS  +  ELKT++H++   LF+H V GS+D 
Sbjct:    86 LMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDK 145

Query:    80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR 139
             EV  GKPAPD+FLVAA RF   P+PS CLVFED+PNGV  A +AGM  VMVPDP + + +
Sbjct:   146 EVVNGKPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPRLSQEK 205

Query:   140 TEAADLVLNSLEEFKPELYGLPPFED 165
             T  A  VL SL +FKPE +GLP F D
Sbjct:   206 TSHATQVLASLADFKPEQFGLPAFTD 231

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042060 "wound healing" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94529	GS1_DROME	3, ., 1, ., 3, ., n, 6	0.5479	0.8734	0.6277	yes	N/A
Q9D5U5	HDHD1_MOUSE	3, ., 1, ., 3, ., n, 6	0.5693	0.8192	0.5811	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	166
PLN02811	220	PLN02811, PLN02811, hydrolase	6e-67
PLN02940	382	PLN02940, PLN02940, riboflavin kinase	8e-41
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	2e-27
PRK11587	218	PRK11587, PRK11587, putative phosphatase; Provisio	3e-21
TIGR01509	177	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase sup	3e-18
TIGR02009	185	TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase f	7e-18
pfam00702	187	pfam00702, Hydrolase, haloacid dehalogenase-like h	2e-15
TIGR01990	185	TIGR01990, bPGM, beta-phosphoglucomutase	3e-15
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	4e-15
PLN02779	286	PLN02779, PLN02779, haloacid dehalogenase-like hyd	2e-12
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	5e-12
pfam13419	176	pfam13419, HAD_2, Haloacid dehalogenase-like hydro	1e-11
PLN03243	260	PLN03243, PLN03243, haloacid dehalogenase-like hyd	3e-11
PRK10826	222	PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase;	3e-11
PLN02575	381	PLN02575, PLN02575, haloacid dehalogenase-like hyd	7e-11
PRK10725	188	PRK10725, PRK10725, fructose-1-P/6-phosphogluconat	4e-10
pfam13242	74	pfam13242, Hydrolase_like, HAD-hyrolase-like	5e-09
COG0546	220	COG0546, Gph, Predicted phosphatases [General func	1e-07
COG1011	229	COG1011, COG1011, Predicted hydrolase (HAD superfa	9e-06
TIGR02253	221	TIGR02253, CTE7, HAD superfamily (subfamily IA) hy	1e-05
PRK13222	226	PRK13222, PRK13222, phosphoglycolate phosphatase;	0.001
PLN02770	248	PLN02770, PLN02770, haloacid dehalogenase-like hyd	0.002
COG0647	269	COG0647, NagD, Predicted sugar phosphatases of the	0.002
pfam13344	101	pfam13344, Hydrolase_6, Haloacid dehalogenase-like	0.002
TIGR01454	205	TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic	0.002
TIGR01993	183	TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleoti	0.004

>gnl|CDD|178407 PLN02811, PLN02811, hydrolase

 Score =  202 bits (516), Expect = 6e-67
 Identities = 86/138 (62%), Positives = 97/138 (70%), Gaps = 2/138 (1%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA RL+ HLH   IP AIAT S K  F+LKT RH +   L HHVV G  DPEVKQGKPAP
Sbjct: 82  GAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGD-DPEVKQGKPAP 140

Query: 89  DVFLVAAKRF-DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
           D+FL AA+RF D    P K LVFEDAP+GV  AK AGMS VMVPDP + K   + AD VL
Sbjct: 141 DIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVL 200

Query: 148 NSLEEFKPELYGLPPFED 165
           +SL +FKPE +GLPPF D
Sbjct: 201 SSLLDFKPEEWGLPPFPD 218

Length = 220

>gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase

 Score =  140 bits (355), Expect = 8e-41
 Identities = 65/139 (46%), Positives = 90/139 (64%), Gaps = 9/139 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA RLI HL  H +P A+A++S + + E K S H+   + F  +V G    EV++GKP+P
Sbjct: 97  GANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGD---EVEKGKPSP 153

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK--HRTEAADLV 146
           D+FL AAKR + +P  S CLV ED+  GV+  KAAGM  + VP  ++PK  H   +AD V
Sbjct: 154 DIFLEAAKRLNVEP--SNCLVIEDSLPGVMAGKAAGMEVIAVP--SIPKQTHLYSSADEV 209

Query: 147 LNSLEEFKPELYGLPPFED 165
           +NSL + +PE +GLPPF D
Sbjct: 210 INSLLDLQPEKWGLPPFND 228

Length = 382

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score =  101 bits (254), Expect = 2e-27
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G + L+  L    IP A+A+SS + + E   +R    L  F  +V      +V +GKPAP
Sbjct: 90  GVVELLEQLKARGIPLAVASSSPRRAAERVLARLGL-LDYFDVIVTAD---DVARGKPAP 145

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D++L+AA+R      P +C+V ED+P G+  AKAAGM  V VP      H         +
Sbjct: 146 DIYLLAAERLGV--DPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGAD 203

Query: 149 SLEEFKPEL 157
           ++     EL
Sbjct: 204 TVLLDLAEL 212

Length = 221

>gnl|CDD|183215 PRK11587, PRK11587, putative phosphatase; Provisional

 Score = 85.8 bits (213), Expect = 3e-21
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 24/132 (18%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE-------V 81
           GA+ L+NHL+K  IP+AI TS    S  + ++RHK           G   PE       V
Sbjct: 87  GAIALLNHLNKLGIPWAIVTSG---SVPVASARHK---------AAGLPAPEVFVTAERV 134

Query: 82  KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT-VPKHRT 140
           K+GKP PD +L+ A+     PQ  +C+V EDAP GVL   AAG   + V  P   P  R 
Sbjct: 135 KRGKPEPDAYLLGAQLLGLAPQ--ECVVVEDAPAGVLSGLAAGCHVIAVNAPADTP--RL 190

Query: 141 EAADLVLNSLEE 152
           +  DLVL+SLE+
Sbjct: 191 DEVDLVLHSLEQ 202

Length = 218

>gnl|CDD|233443 TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

 Score = 77.1 bits (190), Expect = 3e-18
 Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 20  LLLGYNLAI--GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA 77
            L    L    G   L+  L       A+ T+S +   +L          LF  V+  S 
Sbjct: 72  ALEKEGLKPLPGVRALLEALRARGKKLALLTNSPRADAKLV--LELGLRALFDVVIDSS- 128

Query: 78  DPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
             +V  GKP PD++L A K+   KP   +CL  +D+P G+  AKAAGM  V+V
Sbjct: 129 --DVGLGKPDPDIYLQALKKLGLKPS--ECLFVDDSPAGIDAAKAAGMHTVLV 177

This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model [Unknown function, Enzymes of unknown specificity]. Length = 177

>gnl|CDD|213673 TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase family hydrolase

 Score = 76.2 bits (188), Expect = 7e-18
 Identities = 37/102 (36%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G   L+  L    I   + +SS      L           F  +V  S   EVK GKP P
Sbjct: 92  GIRNLLKRLKAKGIAVGLGSSSKNAPRILAKL---GLRDYFDAIVDAS---EVKNGKPHP 145

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           + FL+AA+       P++C+VFEDA  GV  A+AAGM  V V
Sbjct: 146 ETFLLAAELL--GVPPNECIVFEDALAGVQAARAAGMFAVAV 185

This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509). Length = 185

>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA   +  L +  I  AI T   + +     +     L LF  +V       V  GKP P
Sbjct: 98  GAREALKELKEAGIKLAILTGDNRLT----ANAIARLLGLFDALVSADLYGLVGVGKPDP 153

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAG 124
            +F +A +    K  P + L+  D  N +  AKAAG
Sbjct: 154 KIFELALEELGVK--PEEVLMVGDGVNDIPAAKAAG 187

This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Pseudomonas sp. (S)-2-haloacid dehalogenase 1. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria. Length = 187

>gnl|CDD|213672 TIGR01990, bPGM, beta-phosphoglucomutase

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 16/106 (15%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL---FHHVVLGSADP-EVKQG 84
           G   L+  L K+NI  A+A++S      L+       L+L   F  +V    DP E+K+G
Sbjct: 91  GIKSLLADLKKNNIKIALASASKNAPTILEK------LELIDYFDAIV----DPAELKKG 140

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           KP P++FL AA+     P   +C+  EDA  G+   KAAGM  V V
Sbjct: 141 KPDPEIFLAAAEGLGVSPS--ECIGIEDAQAGIEAIKAAGMFAVGV 184

This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 185

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 37/142 (26%), Positives = 53/142 (37%), Gaps = 28/142 (19%)

Query: 13  VIFDMDGLLLGYNLAI----------GALRLINHLHKHNIPFAIATSSAKESFELKTSRH 62
           V+FD+DG LL     I          G    +  L +  I  A+AT+ ++   E+     
Sbjct: 2   VLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRR--EVLELLE 59

Query: 63  KDTLKLFHHVVLGSAD--------------PEVKQGKPAPDVFLVAAKRFDEKPQPSKCL 108
           +  L  +   V+ S                     GKP PD  L A K     P   + L
Sbjct: 60  ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDP--EEVL 117

Query: 109 VFEDAPNGVLGAKAAGMSCVMV 130
           +  D+ N +  AKAAG   V V
Sbjct: 118 MVGDSLNDIEMAKAAGGLGVAV 139

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|215416 PLN02779, PLN02779, haloacid dehalogenase-like hydrolase family protein

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 21/140 (15%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFE------LKTSRHKDTLKLFHHVVLGSADPEVK 82
           G LRL++      I  A+ ++S +++        L   R    L +F       A  +V 
Sbjct: 148 GVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPER-AQGLDVF-------AGDDVP 199

Query: 83  QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA 142
           + KP PD++ +AA+       PS+C+V ED+  G+  AKAAGM C++             
Sbjct: 200 KKKPDPDIYNLAAETL--GVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSG 257

Query: 143 ADLVLNSL-----EEFKPEL 157
           AD V + L     E+F    
Sbjct: 258 ADAVFDCLGDVPLEDFDLLF 277

Length = 286

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 62.6 bits (152), Expect = 5e-12
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GAL LI       +  A+A+S+ +   +   +     L +F  +V  SAD   +  KPAP
Sbjct: 165 GALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIV--SADA-FENLKPAP 221

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           D+FL AAK        S+C+V EDA  GV  A+AAGM C+ V
Sbjct: 222 DIFLAAAKILGVPT--SECVVIEDALAGVQAARAAGMRCIAV 261

Length = 1057

>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             + L+  L    +   I ++ ++E+ E    +    L LF  V       +V   KP P
Sbjct: 81  DVVELLRRLKAKGVKLVILSNGSREAVERLLEKLGL-LDLFDAVFTSD---DVGARKPDP 136

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           + +    +R      P + L  +D+P  +  A+AAG+  V V
Sbjct: 137 EAYERVLERLG--LPPEEILFIDDSPEDLEAARAAGIKTVHV 176

Length = 176

>gnl|CDD|215644 PLN03243, PLN03243, haloacid dehalogenase-like hydrolase; Provisional

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 7/130 (5%)

Query: 24  YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ 83
           Y L  G+   +  L KH IP A+A++  +   E   +     ++ F  VVL + D  V +
Sbjct: 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLE--RAIEAVGMEGFFSVVLAAED--VYR 163

Query: 84  GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAA 143
           GKP P++F+ AA+R    P+  +C+VF ++ + V  A    M CV V     P +   A 
Sbjct: 164 GKPDPEMFMYAAERLGFIPE--RCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAG 220

Query: 144 DLVLNSLEEF 153
           DLV+  L++ 
Sbjct: 221 DLVVRRLDDL 230

Length = 260

>gnl|CDD|236770 PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase; Provisional

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 84  GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA- 142
            KP P+V+L  A +      P  C+  ED+ NG++ AKAA M  ++VP    P+ + +  
Sbjct: 147 SKPHPEVYLNCAAKLG--VDPLTCVALEDSFNGMIAAKAARMRSIVVPA---PEQQNDPR 201

Query: 143 ---ADLVLNSLEEFKPEL 157
              AD+ L SL E     
Sbjct: 202 WALADVKLESLTELTAAD 219

Length = 222

>gnl|CDD|215313 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 24  YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ 83
           Y L  G+   +N L  + IP A+ ++  +++ E   +     ++ F  V++ + D  V +
Sbjct: 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLE--NAIGSIGIRGFFSVIVAAED--VYR 270

Query: 84  GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAA 143
           GKP P++F+ AA+  +  P+  +C+VF ++   V  A  A M CV V     P +   AA
Sbjct: 271 GKPDPEMFIYAAQLLNFIPE--RCIVFGNSNQTVEAAHDARMKCVAVASKH-PIYELGAA 327

Query: 144 DLVLNSLEE 152
           DLV+  L+E
Sbjct: 328 DLVVRRLDE 336

Length = 381

>gnl|CDD|182679 PRK10725, PRK10725, fructose-1-P/6-phosphogluconate phosphatase; Provisional

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 61  RHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA 120
            H    + F  VV  +AD +V+  KPAPD FL  A+      QP++C+VFEDA  G+  A
Sbjct: 121 AHLGLRRYFDAVV--AAD-DVQHHKPAPDTFLRCAQLM--GVQPTQCVVFEDADFGIQAA 175

Query: 121 KAAGMSCVMV 130
           +AAGM  V V
Sbjct: 176 RAAGMDAVDV 185

Length = 188

>gnl|CDD|222003 pfam13242, Hydrolase_like, HAD-hyrolase-like

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 84  GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP----DPTVPKHR 139
           GKP P +   A +R    P   +C++  D+   +L A+AAG+  ++V          +  
Sbjct: 3   GKPNPGMLRAALERLGVDP--EECVMIGDSDTDILAARAAGIRTILVLTGVTTAEDLERA 60

Query: 140 TEAADLVLNSLEE 152
               D V++SL +
Sbjct: 61  PGRPDYVVDSLAD 73

Length = 74

>gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction only]

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFEL-KTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
           G   L+  L        I T+  K   EL    +       F  V++G  D  V   KP 
Sbjct: 93  GVKELLAALKSAGYKLGIVTN--KPERELDILLKALGLADYFD-VIVGGDD--VPPPKPD 147

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADL 145
           P+  L+  ++      P + L+  D+ N +L AKAAG+  V V      +       AD+
Sbjct: 148 PEPLLLLLEKL--GLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADV 205

Query: 146 VLNSLEE 152
           V++SL E
Sbjct: 206 VIDSLAE 212

Length = 220

>gnl|CDD|223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 68  LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED-APNGVLGAKAAGM- 125
            F  V +     +V   KP P++F  A ++    P+  + L   D   N +LGA+A GM 
Sbjct: 140 YFDAVFISE---DVGVAKPDPEIFEYALEKLGVPPE--EALFVGDSLENDILGARALGMK 194

Query: 126 SCVMVPDPTVPKHRTEAADLVLNSLEE 152
           +  +           EA D  ++SL E
Sbjct: 195 TVWINRGGKPLPDALEAPDYEISSLAE 221

Length = 229

>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase, TIGR02253

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 68  LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMS 126
            F  V+      E    KP P +F  A KR   KP+  + ++  D     + GAK  GM 
Sbjct: 136 FFDAVITSE---EEGVEKPHPKIFYAALKRLGVKPE--EAVMVGDRLDKDIKGAKNLGMK 190

Query: 127 CVMVP---DPTVPKHRTEAADLVLNSLEE 152
            V +       +        D  ++SL E
Sbjct: 191 TVWINQGKSSKMEDDVYPYPDYEISSLRE 219

This family of sequences from archaea and metazoans includes the human uncharacterized protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Length = 221

>gnl|CDD|237310 PRK13222, PRK13222, phosphoglycolate phosphatase; Provisional

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G    +  L     P A+ T+     F             F  VV+G     +   KP P
Sbjct: 97  GVKETLAALKAAGYPLAVVTNKP-TPFVAPLLEALGIADYFS-VVIGGDS--LPNKKPDP 152

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV------PDPTVPKHRTEA 142
              L+A ++      P + L   D+ N +  A+AAG   V V       +P         
Sbjct: 153 APLLLACEKLGL--DPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEP----IALSE 206

Query: 143 ADLVLNSLEEFKPEL 157
            D+V++   E  P L
Sbjct: 207 PDVVIDHFAELLPLL 221

Length = 226

>gnl|CDD|215413 PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 17/112 (15%)

Query: 26  LAIGALRLINHLHK-------HNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD 78
           LA   L+ +N L+K         +  A  T++ +E+ EL  S    +   F  V++GS  
Sbjct: 102 LASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQAVIIGS-- 158

Query: 79  PEVKQGKPAPDVFLVAAKRFDEKPQPSK--CLVFEDAPNGVLGAKAAGMSCV 128
            E +  KP PD +L A     E  + SK    VFED+ +G+    AAGM  V
Sbjct: 159 -ECEHAKPHPDPYLKAL----EVLKVSKDHTFVFEDSVSGIKAGVAAGMPVV 205

Length = 248

>gnl|CDD|223720 COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 21/86 (24%)

Query: 84  GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMV-----------P 131
           GKP+P ++  A ++       S+ L+  D  +  +LGAKAAG+  ++V            
Sbjct: 189 GKPSPAIYEAALEKL--GLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDR 246

Query: 132 DPTVPKHRTEAADLVLNSLEEFKPEL 157
               P         V++SL E    L
Sbjct: 247 AEVKP-------TYVVDSLAELITAL 265

Length = 269

>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKES 54
           +FD+DG L  G     GA   +N L     P    T+++  S
Sbjct: 1  FLFDVDGVLWRGGEPIPGAAEALNALRAAGKPVVFVTNNSSRS 43

This family is part of the HAD superfamily. Length = 101

>gnl|CDD|130521 TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic acid synthesis related protein

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 29  GALRLINHLHKHNIPFAIAT-SSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
           G   L+  L    +  AIAT  S   +  L  +     L LF HV+ GS   EV + KPA
Sbjct: 79  GVPELLAELRADGVGTAIATGKSGPRARSLLEAL--GLLPLFDHVI-GS--DEVPRPKPA 133

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128
           PD+   A +  D  P+    ++  DA   +  A+AAG + V
Sbjct: 134 PDIVREALRLLDVPPE--DAVMVGDAVTDLASARAAGTATV 172

The enzymes in this equivalog are all located in the operons for the biosynthesis of 3-amino-5-hydroxybenoic acid (AHBA), which is a precursor of several antibiotics including ansatrienin , naphthomycin , rifamycin and mitomycin. The role that this enzyme plays in this biosynthesis has not been elucidated. This enzyme is a member of the Haloacid dehalogenase superfamily (pfam00702) of aspartate-nucleophile hydrolases. This enzyme is closely related to phosphoglycolate phosphatase (TIGR01449), but it is unclear what purpose a PGPase or PGPase-like activity would serve in these biosyntheses. This model is limited to the Gram positive Actinobacteria. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity. Length = 205

>gnl|CDD|233675 TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleotidase

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           KP+P  +  A +     P+  + + F+D+   +   KA GM  V+V
Sbjct: 140 KPSPQAYEKALREAGVDPE--RAIFFDDSARNIAAGKALGMKTVLV 183

This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509). Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PLN02940	382	riboflavin kinase	99.93
COG0546	220	Gph Predicted phosphatases [General function predi	99.93
PRK13288	214	pyrophosphatase PpaX; Provisional	99.93
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	99.92
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	99.92
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.92
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	99.92
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	99.91
PRK13226	229	phosphoglycolate phosphatase; Provisional	99.91
PLN02811	220	hydrolase	99.91
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.91
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	99.91
PLN02575	381	haloacid dehalogenase-like hydrolase	99.9
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	99.9
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.9
PRK09449	224	dUMP phosphatase; Provisional	99.9
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.89
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.89
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.89
PRK06769	173	hypothetical protein; Validated	99.89
PRK11587	218	putative phosphatase; Provisional	99.89
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.89
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.89
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.88
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.88
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.87
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.87
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.87
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.87
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	99.87
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.86
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.86
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.86
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.86
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.85
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.84
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.84
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.83
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.83
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.83
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	99.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.82
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.82
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.82
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.8
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.8
KOG3085|consensus	237		99.78
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.75
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.75
KOG2914|consensus	222		99.75
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.75
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.74
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.73
PHA02597	197	30.2 hypothetical protein; Provisional	99.73
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	99.72
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.7
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	99.7
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.7
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	99.68
PHA02530	300	pseT polynucleotide kinase; Provisional	99.67
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	99.67
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	99.66
PLN02954	224	phosphoserine phosphatase	99.65
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.65
COG0241	181	HisB Histidinol phosphatase and related phosphatas	99.64
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.64
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.63
KOG3109|consensus	244		99.63
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	99.61
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.61
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	99.61
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.59
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.58
PRK10444	248	UMP phosphatase; Provisional	99.58
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.58
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.57
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.57
PLN02645	311	phosphoglycolate phosphatase	99.56
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.5
KOG2882|consensus	306		99.49
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.47
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	99.46
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	99.45
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.44
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.43
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.42
KOG3040|consensus	262		99.4
COG4229	229	Predicted enolase-phosphatase [Energy production a	99.4
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.4
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	99.38
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	99.38
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	99.37
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.37
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	99.36
PTZ00445	219	p36-lilke protein; Provisional	99.28
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	99.26
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.24
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.23
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	99.23
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.22
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.17
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	99.12
PRK08238	479	hypothetical protein; Validated	99.12
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	99.09
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	99.08
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	99.05
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.04
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	99.04
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.02
COG4087	152	Soluble P-type ATPase [General function prediction	98.95
PRK10671	834	copA copper exporting ATPase; Provisional	98.9
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	98.74
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	98.74
KOG1615|consensus	227		98.67
PLN02645	311	phosphoglycolate phosphatase	98.64
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	98.64
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	98.6
KOG2630|consensus	254		98.57
COG4359	220	Uncharacterized conserved protein [Function unknow	98.57
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	98.55
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	98.54
COG4996	164	Predicted phosphatase [General function prediction	98.51
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	98.45
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.44
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	98.42
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	98.33
PRK11590	211	hypothetical protein; Provisional	98.21
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.2
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	98.19
PRK14010	673	potassium-transporting ATPase subunit B; Provision	98.17
PRK01158	230	phosphoglycolate phosphatase; Provisional	98.15
PRK01122	679	potassium-transporting ATPase subunit B; Provision	98.12
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.07
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	98.02
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	98.01
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	97.98
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.97
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	97.95
PRK15122	903	magnesium-transporting ATPase; Provisional	97.95
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	97.93
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	97.92
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	97.9
KOG3120|consensus	256		97.89
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	97.77
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	97.77
PHA03398	303	viral phosphatase superfamily protein; Provisional	97.74
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	97.74
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	97.68
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	97.61
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	97.59
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	97.58
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	97.55
KOG0207|consensus	951		97.5
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	97.49
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	97.47
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	97.43
KOG2961|consensus	190		97.41
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	97.4
KOG2470|consensus	510		97.39
COG3700	237	AphA Acid phosphatase (class B) [General function	97.32
PLN03190	1178	aminophospholipid translocase; Provisional	97.28
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	97.23
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	97.22
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	97.2
COG5610	635	Predicted hydrolase (HAD superfamily) [General fun	97.16
KOG0202|consensus	972		97.16
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	97.12
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	97.11
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	97.11
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	97.07
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	97.04
PF05822	246	UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); Inter	97.03
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	97.02
PRK10513	270	sugar phosphate phosphatase; Provisional	96.99
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	96.88
KOG3128|consensus	298		96.78
TIGR01658	274	EYA-cons_domain eyes absent protein conserved doma	96.66
PRK10976	266	putative hydrolase; Provisional	96.63
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	96.47
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	96.34
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	96.32
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	96.3
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	96.26
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	96.17
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	96.07
PLN02887	580	hydrolase family protein	96.07
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	95.95
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	95.77
PLN02382	413	probable sucrose-phosphatase	95.54
COG2503	274	Predicted secreted acid phosphatase [General funct	95.31
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	95.25
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	95.11
KOG0206|consensus	1151		94.87
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	94.46
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	94.37
KOG0210|consensus	1051		94.35
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	94.33
PRK10513	270	sugar phosphate phosphatase; Provisional	94.3
KOG2469|consensus	424		94.3
PLN02580	384	trehalose-phosphatase	94.26
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	93.53
COG4030	315	Uncharacterized protein conserved in archaea [Func	93.48
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	93.34
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	93.12
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	93.03
KOG4549|consensus	144		92.95
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	92.87
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	92.82
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	92.8
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	92.77
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	92.65
PRK10976	266	putative hydrolase; Provisional	92.38
COG0731	296	Fe-S oxidoreductases [Energy production and conver	92.29
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	92.2
KOG3107|consensus	468		92.15
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	92.13
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	91.85
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	91.39
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	91.29
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	91.09
COG4850	373	Uncharacterized conserved protein [Function unknow	90.98
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	90.83
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	90.41
PF03332	220	PMM: Eukaryotic phosphomannomutase; InterPro: IPR0	89.94
KOG1618|consensus	389		89.88
PF06506	176	PrpR_N: Propionate catabolism activator; InterPro:	89.5
KOG2134|consensus	422		89.34
KOG0209|consensus	1160		89.01
PRK00994	277	F420-dependent methylenetetrahydromethanopterin de	88.9
PRK13762	322	tRNA-modifying enzyme; Provisional	88.69
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	88.65
PTZ00174	247	phosphomannomutase; Provisional	87.92
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	87.8
TIGR02495	191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	87.5
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	87.38
PLN02151	354	trehalose-phosphatase	87.38
TIGR02826	147	RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph	86.31
KOG1618|consensus	389		86.3
PLN03017	366	trehalose-phosphatase	86.23
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	86.13
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	86.09
TIGR03365	238	Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn	85.58
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	85.56
KOG0204|consensus	1034		85.36
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	84.46
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	84.12
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	82.83
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	82.68
PLN02423	245	phosphomannomutase	80.86
PRK15424	538	propionate catabolism operon regulatory protein Pr	80.74
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	80.58
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	80.5

>PLN02940 riboflavin kinase

Probab=99.93  E-value=1.9e-24  Score=170.28  Aligned_cols=140  Identities=45%  Similarity=0.731  Sum_probs=126.1

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      .....++||+.++|+.|+++|++++|+||+....+...+.+..|+..+|+.+++++   ++...||+|++|..++++++ 
T Consensus        89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d---~v~~~KP~p~~~~~a~~~lg-  164 (382)
T PLN02940         89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGD---EVEKGKPSPDIFLEAAKRLN-  164 (382)
T ss_pred             HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehh---hcCCCCCCHHHHHHHHHHcC-
Confidence            34578999999999999999999999999998877666664579999999999999   88899999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCCCCC
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFED  165 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  165 (166)
                       +++++|+||||+.+|+++|+++|+.++++.++.........++.+++++.++...-.++|+|++
T Consensus       165 -v~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~  228 (382)
T PLN02940        165 -VEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFND  228 (382)
T ss_pred             -CChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccc
Confidence             9999999999999999999999999999998854443446788999999999999889999986

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=99.93  E-value=2.1e-24  Score=158.67  Aligned_cols=131  Identities=25%  Similarity=0.363  Sum_probs=117.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++|+||+....+...+ +++|+..+|+.+++++   .....||+|..+..++++++  .
T Consensus        87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~---~~~~~KP~P~~l~~~~~~~~--~  160 (220)
T COG0546          87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGD---DVPPPKPDPEPLLLLLEKLG--L  160 (220)
T ss_pred             cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCC---CCCCCCcCHHHHHHHHHHhC--C
Confidence            3589999999999999999999999999988775554 5579999999999977   78899999999999999999  7


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +|++++||||+..|+.+|+++|+++++|.||+...+  ....++++++++.+|...+..
T Consensus       161 ~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~~  219 (220)
T COG0546         161 DPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLAE  219 (220)
T ss_pred             ChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHhc
Confidence            888999999999999999999999999999975333  556799999999999987753

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.93  E-value=2e-24  Score=158.05  Aligned_cols=132  Identities=17%  Similarity=0.270  Sum_probs=117.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++++   +....||+|..++.++++++  .
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~---~~~~~Kp~p~~~~~~~~~~~--~  153 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLD---DVEHAKPDPEPVLKALELLG--A  153 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecC---cCCCCCCCcHHHHHHHHHcC--C
Confidence            4679999999999999999999999999988776555 5579999999999999   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ++++++||||+.+|+++|+++|+.++++.|+.....  ....++++++++.++.+++..+
T Consensus       154 ~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~~~  213 (214)
T PRK13288        154 KPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVGDM  213 (214)
T ss_pred             CHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHhhc
Confidence            999999999999999999999999999999865443  2356889999999999987554

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=99.92  E-value=3e-24  Score=160.48  Aligned_cols=125  Identities=24%  Similarity=0.355  Sum_probs=112.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+. ++|+.+||+.+++++   ++...||+|+.|..++++++  +
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~-~~gl~~~Fd~iv~~~---~~~~~KP~p~~~~~a~~~~~--~  179 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMIS-LLGLSDFFQAVIIGS---ECEHAKPHPDPYLKALEVLK--V  179 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH-HcCChhhCcEEEecC---cCCCCCCChHHHHHHHHHhC--C
Confidence            47899999999999999999999999999888866664 479999999999999   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEF  153 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l  153 (166)
                      +|++|+||||+..|+++|+++|+.++++.++..... ....++++++++.++
T Consensus       180 ~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~  231 (248)
T PLN02770        180 SKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP  231 (248)
T ss_pred             ChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence            999999999999999999999999999999853333 335789999999983

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=99.92  E-value=5.6e-24  Score=155.24  Aligned_cols=129  Identities=22%  Similarity=0.278  Sum_probs=114.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +++|+..+|+.+++++   +....||+|+.|..++++++  +
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~p~~~~~~~~~~~--~  156 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGD---SLAQRKPHPDPLLLAAERLG--V  156 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecC---CCCCCCCChHHHHHHHHHcC--C
Confidence            4679999999999999999999999999887776555 5579999999999998   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l  157 (166)
                      ++++|+||||+.+|+.+|+++|++++++.+|.....  ....++++++++.++..+|
T Consensus       157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~~~  213 (213)
T TIGR01449       157 APQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPPLL  213 (213)
T ss_pred             ChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHhhC
Confidence            999999999999999999999999999998865433  2357899999999987653

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.92  E-value=3.4e-24  Score=155.83  Aligned_cols=131  Identities=24%  Similarity=0.246  Sum_probs=117.1

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|++|+++|++++|+||+....+...+ +.+|+..+|+.+++++   +...+||++..|+.++++++  
T Consensus        72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~--  145 (205)
T TIGR01454        72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSD---EVPRPKPAPDIVREALRLLD--  145 (205)
T ss_pred             cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecC---cCCCCCCChHHHHHHHHHcC--
Confidence            45789999999999999999999999999988776555 5579999999999998   78889999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +++++|+||||+.+|+.+|+++|++++++.||.....  ....++++++++.++..++.
T Consensus       146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~~  204 (205)
T TIGR01454       146 VPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALCR  204 (205)
T ss_pred             CChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHhh
Confidence            9999999999999999999999999999999975554  34578999999999987653

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=99.92  E-value=5.3e-24  Score=159.51  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=113.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ....++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+| +.+++++   ++...||+|++|..++++++ 
T Consensus        96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~---~~~~~KP~p~~~~~a~~~l~-  170 (253)
T TIGR01422        96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTD---DVPAGRPAPWMALKNAIELG-  170 (253)
T ss_pred             hcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccc---cCCCCCCCHHHHHHHHHHcC-
Confidence            34689999999999999999999999999988776555 446999986 8999999   88889999999999999999 


Q ss_pred             CCC-CCceEEEecCHhHHHHHHHcCCeEEEecCCCCC-----------------------c-c-cccccchhhCChhhhh
Q psy6288         101 KPQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP-----------------------K-H-RTEAADLVLNSLEEFK  154 (166)
Q Consensus       101 ~~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~-----------------------~-~-~~~~~~~~~~~~~~l~  154 (166)
                       +. +++|+||||+++|+.+|+++|+.+|+|.+|...                       . + ....++++++++.++.
T Consensus       171 -~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~el~  249 (253)
T TIGR01422       171 -VYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHYVIDTLAELP  249 (253)
T ss_pred             -CCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCEehhcHHHHH
Confidence             85 999999999999999999999999999998642                       1 2 3457899999999998


Q ss_pred             hhh
Q psy6288         155 PEL  157 (166)
Q Consensus       155 ~~l  157 (166)
                      +++
T Consensus       250 ~~~  252 (253)
T TIGR01422       250 AVI  252 (253)
T ss_pred             Hhh
Confidence            764

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=99.91  E-value=1.7e-23  Score=157.23  Aligned_cols=130  Identities=29%  Similarity=0.499  Sum_probs=114.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +++|+..||+.+++++   +....||+|++|..++++++  +
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~---d~~~~KP~Pe~~~~a~~~l~--~  180 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAE---DVYRGKPDPEMFMYAAERLG--F  180 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecc---cCCCCCCCHHHHHHHHHHhC--C
Confidence            4678999999999999999999999999988775555 5579999999999999   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ++++|+||||+..|+.+|+++|+.++++. +.........++++++++.++..+.+.
T Consensus       181 ~p~~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~~~~~~  236 (260)
T PLN03243        181 IPERCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLSVVDLK  236 (260)
T ss_pred             ChHHeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHHHHHHh
Confidence            99999999999999999999999999997 433333345688999999999877653

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=99.91  E-value=1.9e-23  Score=154.44  Aligned_cols=130  Identities=21%  Similarity=0.205  Sum_probs=115.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+........ .+.+|+..+|+.+++++   .....||+|++|..+++++|  +
T Consensus        93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~-l~~~~l~~~f~~i~~~~---~~~~~KP~p~~~~~~~~~l~--~  166 (229)
T PRK13226         93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLI-LPQLGWEQRCAVLIGGD---TLAERKPHPLPLLVAAERIG--V  166 (229)
T ss_pred             cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHH-HHHcCchhcccEEEecC---cCCCCCCCHHHHHHHHHHhC--C
Confidence            468999999999999999999999999987766444 45579999999999988   78889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc---cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH---RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~---~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +|++|+||||+.+|+.+|+++|+.++++.||.....   ....++++++++.+|.+.+.
T Consensus       167 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~~  225 (229)
T PRK13226        167 APTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPAT  225 (229)
T ss_pred             ChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHhc
Confidence            999999999999999999999999999999975322   24578999999999988764

>PLN02811 hydrolase

Probab=99.91  E-value=4.7e-23  Score=151.46  Aligned_cols=143  Identities=60%  Similarity=0.946  Sum_probs=117.9

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC-
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE-  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~-  100 (166)
                      ....++||+.++|+.|++.|++++|+||.........+.++.++..+|+.+++++ +.++...||+|++|..++++++. 
T Consensus        75 ~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~-~~~~~~~KP~p~~~~~a~~~~~~~  153 (220)
T PLN02811         75 PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGD-DPEVKQGKPAPDIFLAAARRFEDG  153 (220)
T ss_pred             hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECC-hhhccCCCCCcHHHHHHHHHhCCC
Confidence            3577899999999999999999999999987656555555557889999999887 22356789999999999999930 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCCCCC
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFED  165 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  165 (166)
                      .+++++|+||||+.+|+++|+++|+++|+|.++.........++++++++.++...=.++++|-+
T Consensus       154 ~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~~~~~~~~~  218 (220)
T PLN02811        154 PVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEEWGLPPFPD  218 (220)
T ss_pred             CCCccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHHcCCCCCCC
Confidence            07899999999999999999999999999998865444445789999999988776666776654

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.91  E-value=2.4e-23  Score=152.73  Aligned_cols=125  Identities=22%  Similarity=0.282  Sum_probs=110.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++++   +.+..||+|..|+.++++++  +
T Consensus        92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~--~  165 (221)
T TIGR02253        92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSE---EEGVEKPHPKIFYAALKRLG--V  165 (221)
T ss_pred             hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEec---cCCCCCCCHHHHHHHHHHcC--C
Confidence            4689999999999999999999999999877776665 4479999999999999   88999999999999999999  9


Q ss_pred             CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc---ccccccchhhCChhhh
Q psy6288         103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK---HRTEAADLVLNSLEEF  153 (166)
Q Consensus       103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~---~~~~~~~~~~~~~~~l  153 (166)
                      ++++||||||++ +|+.+|+++|+.+|++.++....   .....++++++++.++
T Consensus       166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el  220 (221)
T TIGR02253       166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL  220 (221)
T ss_pred             ChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence            999999999998 89999999999999999886433   1234678889998876

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=99.91  E-value=5e-23  Score=151.10  Aligned_cols=129  Identities=24%  Similarity=0.219  Sum_probs=113.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc--cccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~--~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +.+|+.  ++|+.+++++   +....||+|++|..++++++ 
T Consensus        85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~---~~~~~KP~p~~~~~a~~~~~-  159 (220)
T TIGR03351        85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPS---DVAAGRPAPDLILRAMELTG-  159 (220)
T ss_pred             CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCC---cCCCCCCCHHHHHHHHHHcC-
Confidence            3589999999999999999999999999988876665 446998  9999999999   88889999999999999999 


Q ss_pred             CCC-CCceEEEecCHhHHHHHHHcCCeE-EEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288         101 KPQ-PSKCLVFEDAPNGVLGAKAAGMSC-VMVPDPTVPKH--RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       101 ~~~-~~~~i~IGD~~~Di~~a~~~G~~~-i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l  157 (166)
                       +. |++|+||||+.+|+++|+++|+.+ +++.++.....  ....++++++++.++...+
T Consensus       160 -~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~~  219 (220)
T TIGR03351       160 -VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPALL  219 (220)
T ss_pred             -CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHhh
Confidence             87 799999999999999999999999 99988865443  2346888999999987653

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.90  E-value=6.9e-23  Score=159.80  Aligned_cols=128  Identities=29%  Similarity=0.470  Sum_probs=113.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +++|+..||+.+++++   ++...||+|++|..++++++  +
T Consensus       214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sd---dv~~~KP~Peifl~A~~~lg--l  287 (381)
T PLN02575        214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAE---DVYRGKPDPEMFIYAAQLLN--F  287 (381)
T ss_pred             CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecC---cCCCCCCCHHHHHHHHHHcC--C
Confidence            4678999999999999999999999999988886665 5579999999999999   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +|++|+||||+..|+++|+++|+.+|+|.++.... ....++++++++.+|....
T Consensus       288 ~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~~~  341 (381)
T PLN02575        288 IPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSIVD  341 (381)
T ss_pred             CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHHHH
Confidence            99999999999999999999999999998764222 2345788999999985543

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=99.90  E-value=7.6e-23  Score=150.47  Aligned_cols=129  Identities=26%  Similarity=0.401  Sum_probs=114.9

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++|++++|+||+....+...+ +.+++..+|+.+++++   .....||+|.+|+.+++++|  
T Consensus        89 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--  162 (222)
T PRK10826         89 ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAE---KLPYSKPHPEVYLNCAAKLG--  162 (222)
T ss_pred             cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcc---cCCCCCCCHHHHHHHHHHcC--
Confidence            35789999999999999999999999999988775555 5579999999999999   88899999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPE  156 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~  156 (166)
                      ++|++|+||||+.+|+.+|+++|++++++.++....+ ....++.+++++.++.++
T Consensus       163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~  218 (222)
T PRK10826        163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAA  218 (222)
T ss_pred             CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhh
Confidence            9999999999999999999999999999998864443 334688999999999765

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.90  E-value=6.4e-23  Score=154.83  Aligned_cols=130  Identities=21%  Similarity=0.251  Sum_probs=112.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +.+++..+| +.+++++   +....||+|.+|..++++++  
T Consensus        99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~---~~~~~KP~p~~~~~a~~~l~--  172 (267)
T PRK13478         99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTD---DVPAGRPYPWMALKNAIELG--  172 (267)
T ss_pred             cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCC---cCCCCCCChHHHHHHHHHcC--
Confidence            4688999999999999999999999999988775555 445787775 8899998   88889999999999999999  


Q ss_pred             CC-CCceEEEecCHhHHHHHHHcCCeEEEecCCCCC------------------------cc-cccccchhhCChhhhhh
Q psy6288         102 PQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP------------------------KH-RTEAADLVLNSLEEFKP  155 (166)
Q Consensus       102 ~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~------------------------~~-~~~~~~~~~~~~~~l~~  155 (166)
                      +. +++|+||||+.+|+.+|+++|+.+|+|.++...                        .. ....++++++++.++.+
T Consensus       173 ~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi~~~~~l~~  252 (267)
T PRK13478        173 VYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVIDTIADLPA  252 (267)
T ss_pred             CCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeehhhHHHHHH
Confidence            85 699999999999999999999999999998652                        11 24578999999999988


Q ss_pred             hhc
Q psy6288         156 ELY  158 (166)
Q Consensus       156 ~l~  158 (166)
                      .|.
T Consensus       253 ~l~  255 (267)
T PRK13478        253 VIA  255 (267)
T ss_pred             HHH
Confidence            763

>PRK09449 dUMP phosphatase; Provisional

Probab=99.90  E-value=8.9e-23  Score=150.15  Aligned_cols=129  Identities=21%  Similarity=0.275  Sum_probs=110.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+ +|++++|+||+........+ +.+|+..+||.+++++   +.+..||+|.+|..++++++  +
T Consensus        93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~---~~~~~KP~p~~~~~~~~~~~--~  165 (224)
T PRK09449         93 ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISE---QVGVAKPDVAIFDYALEQMG--N  165 (224)
T ss_pred             cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEEC---ccCCCCCCHHHHHHHHHHcC--C
Confidence            3679999999999999 58999999999988776555 4479999999999999   88899999999999999999  7


Q ss_pred             C-CCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288         103 Q-PSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~-~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      . +++|+||||+. +|+.+|+++|+.++++.++.........++++++++.+|.+++.
T Consensus       166 ~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l~  223 (224)
T PRK09449        166 PDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLLC  223 (224)
T ss_pred             CCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHHh
Confidence            5 48999999998 79999999999999998543222222367899999999988654

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.89  E-value=1.1e-22  Score=149.95  Aligned_cols=130  Identities=14%  Similarity=0.157  Sum_probs=106.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++|++++|+||+....+...+ +++|+..+|+.+++++   +....||+|+.|..++++++  
T Consensus        90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~---~~~~~KP~p~~~~~~~~~~~--  163 (224)
T PRK14988         90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTH---TFGYPKEDQRLWQAVAEHTG--  163 (224)
T ss_pred             ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEee---eCCCCCCCHHHHHHHHHHcC--
Confidence            44789999999999999999999999999988876665 5579999999999999   88889999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCe-EEEecCCCCCccc-ccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMS-CVMVPDPTVPKHR-TEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v~~~~~~~~~-~~~~~~~~~~~~~l~~~l  157 (166)
                      ++|++|+||||+..|+++|+++|+. +++|.++...... ...+...++++.++.+.|
T Consensus       164 ~~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l  221 (224)
T PRK14988        164 LKAERTLFIDDSEPILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSL  221 (224)
T ss_pred             CChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCCCCccchhccCCCcHHHHHHHhhhh
Confidence            9999999999999999999999998 5778876533221 122233455555554443

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.89  E-value=1.7e-22  Score=148.39  Aligned_cols=128  Identities=21%  Similarity=0.345  Sum_probs=112.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc-CCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF-DEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~-~~~  101 (166)
                      ...++||+.++|++|+++ ++++|+||+....+...+ +.+|+..+||.+++++   +.+..||+|.+|..+++++ +  
T Consensus        95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~---~~~~~KP~~~~~~~~~~~~~~--  167 (224)
T TIGR02254        95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSE---DAGIQKPDKEIFNYALERMPK--  167 (224)
T ss_pred             cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcC---ccCCCCCCHHHHHHHHHHhcC--
Confidence            367999999999999999 999999999988775555 5579999999999999   8889999999999999999 9  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      ++|++|+||||+. +|+.+|+++|++++++.++.........++++++++.+|.++|
T Consensus       168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~~  224 (224)
T TIGR02254       168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEIL  224 (224)
T ss_pred             CCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhhC
Confidence            9999999999998 7999999999999999987544333456788999999988754

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.89  E-value=4.4e-22  Score=150.64  Aligned_cols=130  Identities=24%  Similarity=0.319  Sum_probs=114.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||++...+...+ +.+++..+|+.+++++   .....||+|++|+.+++++|  +
T Consensus        99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d---~~~~~Kp~p~~~~~~~~~~g--~  172 (272)
T PRK13223         99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGD---TLPQKKPDPAALLFVMKMAG--V  172 (272)
T ss_pred             CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecC---CCCCCCCCcHHHHHHHHHhC--C
Confidence            4678999999999999999999999999877665454 4579999999999998   78889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++++|+||||+.+|+++|+++|+.+++|.+|.....  ....++++++++.+|.+.+.
T Consensus       173 ~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~~~  230 (272)
T PRK13223        173 PPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPGCA  230 (272)
T ss_pred             ChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHHHh
Confidence            999999999999999999999999999999865443  23478999999999987654

>PRK06769 hypothetical protein; Validated

Probab=99.89  E-value=9.5e-23  Score=144.68  Aligned_cols=130  Identities=13%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchh--------hHHHHHhhhcCcccccceEE-ecCCCCCccCCCCChHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE--------SFELKTSRHKDTLKLFHHVV-LGSADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~--------~~~~~l~~~~gl~~~fd~v~-~~~~~~~~~~~Kp~~~~~~~   93 (166)
                      ...++||+.++|++|+++|++++|+||+...        ..... .+.+|+..+|.... +++   .....||+|++|..
T Consensus        26 ~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~---~~~~~KP~p~~~~~  101 (173)
T PRK06769         26 SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQE-LKGFGFDDIYLCPHKHGD---GCECRKPSTGMLLQ  101 (173)
T ss_pred             HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHH-HHhCCcCEEEECcCCCCC---CCCCCCCCHHHHHH
Confidence            4678999999999999999999999998741        12222 23456655543332 344   56788999999999


Q ss_pred             HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc------c--cccccchhhCChhhhhhhhc
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK------H--RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~------~--~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++++++  .++++|+||||+.+|+.+|+++|+.+|++.++....      +  ....++++++++.++..+|+
T Consensus       102 ~~~~l~--~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~  172 (173)
T PRK06769        102 AAEKHG--LDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWIL  172 (173)
T ss_pred             HHHHcC--CCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHHh
Confidence            999999  999999999999999999999999999999985331      1  23468899999999998764

>PRK11587 putative phosphatase; Provisional

Probab=99.89  E-value=3.2e-22  Score=146.82  Aligned_cols=127  Identities=37%  Similarity=0.566  Sum_probs=108.7

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++|++++|+||+........+ +..++ .+|+.+++++   +....||+|..|..+++++|  
T Consensus        80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~---~~~~~KP~p~~~~~~~~~~g--  152 (218)
T PRK11587         80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAE---RVKRGKPEPDAYLLGAQLLG--  152 (218)
T ss_pred             cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHH---HhcCCCCCcHHHHHHHHHcC--
Confidence            45789999999999999999999999999877554444 44677 4578888888   78889999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPE  156 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~  156 (166)
                      ++|++|+||||+..|+++|+++|+.++++.++.... ....++++++++.++...
T Consensus       153 ~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~-~~~~~~~~~~~~~el~~~  206 (218)
T PRK11587        153 LAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTP-RLDEVDLVLHSLEQLTVT  206 (218)
T ss_pred             CCcccEEEEecchhhhHHHHHCCCEEEEECCCCchh-hhccCCEEecchhheeEE
Confidence            999999999999999999999999999998875332 335688999999998644

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.89  E-value=3.4e-22  Score=144.53  Aligned_cols=107  Identities=21%  Similarity=0.286  Sum_probs=99.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|++|+++|++++|+||+....+...+ +++|+..+||.+++++   +.+..||+|.+|+.++++++  
T Consensus        89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~---~~~~~KP~~~~~~~~~~~~~--  162 (198)
T TIGR01428        89 LRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSAD---AVRAYKPAPQVYQLALEALG--  162 (198)
T ss_pred             hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehh---hcCCCCCCHHHHHHHHHHhC--
Confidence            45789999999999999999999999999988776665 4469999999999999   89999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ++|++|+||||+.+|+.+|+++|+.+|++.++.
T Consensus       163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~  195 (198)
T TIGR01428       163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPG  195 (198)
T ss_pred             CChhhEEEEeCCHHHHHHHHHCCCcEEEecCCC
Confidence            999999999999999999999999999998764

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.89  E-value=1.2e-21  Score=144.02  Aligned_cols=130  Identities=23%  Similarity=0.306  Sum_probs=115.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||+|.+++.++++++  .
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--~  164 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGD---SLPNKKPDPAPLLLACEKLG--L  164 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCC---CCCCCCcChHHHHHHHHHcC--C
Confidence            4779999999999999999999999999977665555 5579999999999988   78889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++++|++|||+.+|+++|+++|+.+++|.+|.....  ....++++++++.++...+.
T Consensus       165 ~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l~  222 (226)
T PRK13222        165 DPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLLG  222 (226)
T ss_pred             ChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHHH
Confidence            999999999999999999999999999999865332  34578899999999988764

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.88  E-value=7.9e-22  Score=149.09  Aligned_cols=135  Identities=18%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             hhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288          17 MDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK   96 (166)
Q Consensus        17 ~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~   96 (166)
                      +........++||+.++|+.|+++|++++|+||+....+...+ +.+|+.++|+.+++++   ..   ++++..+..+++
T Consensus       134 ~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~---~~---~~k~~~~~~~l~  206 (273)
T PRK13225        134 LGDCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGT---PI---LSKRRALSQLVA  206 (273)
T ss_pred             HHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecC---CC---CCCHHHHHHHHH
Confidence            3334456789999999999999999999999999988776665 5579999999988776   43   245789999999


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcCC
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      +++  +++++|+||||+..|+.+|+++|+.+|+|.++.....  ....++++++++.+|.+++..+
T Consensus       207 ~~~--~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~~~  270 (273)
T PRK13225        207 REG--WQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVTQL  270 (273)
T ss_pred             HhC--cChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHHHH
Confidence            999  9999999999999999999999999999999976554  3457899999999998876543

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.88  E-value=1.3e-21  Score=139.84  Aligned_cols=137  Identities=19%  Similarity=0.222  Sum_probs=107.1

Q ss_pred             hhcCCccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEecCC--CCCcc
Q psy6288          20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVLGSA--DPEVK   82 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~~~~--~~~~~   82 (166)
                      ......++||+.++|++|+++|++++|+||++.               ..+...+ +.+|+  +|+.++.+..  .++..
T Consensus        24 ~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~  100 (181)
T PRK08942         24 SPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCD  100 (181)
T ss_pred             CHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCc
Confidence            344578999999999999999999999999863               1121222 33455  4777765431  01456


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-ccccc--chhhCChhhhhhhhcC
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAA--DLVLNSLEEFKPELYG  159 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~--~~~~~~~~~l~~~l~~  159 (166)
                      ..||+|.+|..++++++  +++++|+||||+.+|+.+|+++|+.++++.++..... ....+  +++++++.++.+++.+
T Consensus       101 ~~KP~p~~~~~~~~~l~--~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l~~  178 (181)
T PRK08942        101 CRKPKPGMLLSIAERLN--IDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQALKK  178 (181)
T ss_pred             CCCCCHHHHHHHHHHcC--CChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHHHh
Confidence            78999999999999999  9999999999999999999999999999998864333 23345  8999999999998765


Q ss_pred             CC
Q psy6288         160 LP  161 (166)
Q Consensus       160 ~~  161 (166)
                      .+
T Consensus       179 ~~  180 (181)
T PRK08942        179 QQ  180 (181)
T ss_pred             hc
Confidence            43

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.87  E-value=1.9e-21  Score=138.87  Aligned_cols=101  Identities=35%  Similarity=0.540  Sum_probs=91.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+...  . ...+++|+..+|+.+++++   +....||+|+.|+.++++++  +
T Consensus        85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~--~-~~l~~~~l~~~f~~~~~~~---~~~~~kp~p~~~~~~~~~~~--~  156 (185)
T TIGR01990        85 PADVLPGIKNLLDDLKKNNIKIALASASKNA--P-TVLEKLGLIDYFDAIVDPA---EIKKGKPDPEIFLAAAEGLG--V  156 (185)
T ss_pred             CcccCccHHHHHHHHHHCCCeEEEEeCCccH--H-HHHHhcCcHhhCcEEEehh---hcCCCCCChHHHHHHHHHcC--C
Confidence            3578999999999999999999999987532  2 3456679999999999999   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      ++++|+||||+.+|+++|+++|+++|+|+
T Consensus       157 ~~~~~v~vgD~~~di~aA~~aG~~~i~v~  185 (185)
T TIGR01990       157 SPSECIGIEDAQAGIEAIKAAGMFAVGVG  185 (185)
T ss_pred             CHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence            99999999999999999999999999874

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.87  E-value=1.6e-21  Score=138.78  Aligned_cols=127  Identities=18%  Similarity=0.252  Sum_probs=99.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchh---------------hHHHHHhhhcCcccccceEEecCC--C------C
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE---------------SFELKTSRHKDTLKLFHHVVLGSA--D------P   79 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~---------------~~~~~l~~~~gl~~~fd~v~~~~~--~------~   79 (166)
                      ...++||+.++|++|+++|++++|+||++..               .+... ...+++.  |+.++.+..  .      .
T Consensus        24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~--~~~i~~~~~~~~~~~~~~~  100 (176)
T TIGR00213        24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWS-LAERDVD--LDGIYYCPHHPEGVEEFRQ  100 (176)
T ss_pred             HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHH-HHHcCCC--ccEEEECCCCCcccccccC
Confidence            4678999999999999999999999999841               11112 2223443  666655420  0      0


Q ss_pred             CccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE-EEecCCCCCcc-cccccchhhCChhhhh
Q psy6288          80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC-VMVPDPTVPKH-RTEAADLVLNSLEEFK  154 (166)
Q Consensus        80 ~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~-i~v~~~~~~~~-~~~~~~~~~~~~~~l~  154 (166)
                      ....+||+|.+|..++++++  +++++|+||||+.+|+++|+++|+.+ +++.+|..... ....++++++++.+|.
T Consensus       101 ~~~~~KP~p~~~~~a~~~~~--~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~  175 (176)
T TIGR00213       101 VCDCRKPKPGMLLQARKELH--IDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP  175 (176)
T ss_pred             CCCCCCCCHHHHHHHHHHcC--cChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence            35578999999999999999  99999999999999999999999998 79999854333 2346899999999875

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.87  E-value=3.7e-21  Score=143.00  Aligned_cols=124  Identities=15%  Similarity=0.202  Sum_probs=106.6

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++. ++++|+||+...     + +..|+..+|+.+++++   +....||+|..|..++++++  
T Consensus       110 ~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~---~~~~~KP~p~~~~~a~~~~~--  177 (238)
T PRK10748        110 SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAG---PHGRSKPFSDMYHLAAEKLN--  177 (238)
T ss_pred             hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecc---cCCcCCCcHHHHHHHHHHcC--
Confidence            4478999999999999975 999999998754     2 4469999999999998   88899999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc----ccccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK----HRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~----~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +++++|+||||++ +|+.+|+++|+.++++..+....    .....|++.+.++.+|.+.|
T Consensus       178 ~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~~~  238 (238)
T PRK10748        178 VPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTSLI  238 (238)
T ss_pred             CChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHhhC
Confidence            9999999999995 99999999999999998764321    12245888999999988754

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.87  E-value=2.3e-21  Score=142.39  Aligned_cols=128  Identities=16%  Similarity=0.296  Sum_probs=108.2

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc-eEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-HVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ....++||+.++|+.|   +++++|+||+....+...+ +++|+..+|+ .+++++   +.+..||+|+.|..++++++ 
T Consensus        85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~---~~~~~KP~p~~~~~a~~~~~-  156 (221)
T PRK10563         85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGY---DIQRWKPDPALMFHAAEAMN-  156 (221)
T ss_pred             ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHH---hcCCCCCChHHHHHHHHHcC-
Confidence            3578999999999999   4999999999987776655 5569999996 688887   78889999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                       ++|++|+||||+..|+++|+++|++++++..+.........++.+++++.++.+.+.
T Consensus       157 -~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  213 (221)
T PRK10563        157 -VNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPELWK  213 (221)
T ss_pred             -CCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence             999999999999999999999999999997654333333455678899999887665

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=99.87  E-value=6.3e-21  Score=145.22  Aligned_cols=129  Identities=28%  Similarity=0.449  Sum_probs=106.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ..++||+.++|+.|++.|++++|+||+....+...+ +.++...+|+  .+++++   ++...||+|++|..++++++  
T Consensus       143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v~~~---~~~~~KP~p~~~~~a~~~~~--  216 (286)
T PLN02779        143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVFAGD---DVPKKKPDPDIYNLAAETLG--  216 (286)
T ss_pred             CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEEecc---ccCCCCCCHHHHHHHHHHhC--
Confidence            579999999999999999999999999987775444 3333233333  233666   67789999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++|++|+||||+.+|+++|+++|+.+|+|.+|.........++++++++.++...-+
T Consensus       217 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~  273 (286)
T PLN02779        217 VDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDF  273 (286)
T ss_pred             cChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhh
Confidence            999999999999999999999999999999986655444678999999999876543

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.86  E-value=3.7e-21  Score=141.68  Aligned_cols=130  Identities=28%  Similarity=0.361  Sum_probs=114.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+++|++.+.|+.|++. ++++++||+........+.+ +|+.++||.++.++   +.+..||+|.+|+.+++++|  +
T Consensus        97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~-~gl~~~Fd~v~~s~---~~g~~KP~~~~f~~~~~~~g--~  169 (229)
T COG1011          97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQ-LGLLDYFDAVFISE---DVGVAKPDPEIFEYALEKLG--V  169 (229)
T ss_pred             hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHH-cCChhhhheEEEec---ccccCCCCcHHHHHHHHHcC--C
Confidence            478999999999999998 99999999987777667655 69999999999999   99999999999999999999  8


Q ss_pred             CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc-ccccccchhhCChhhhhhhhcC
Q psy6288         103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK-HRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +|++++||||+. +|+.+|+++|+.++++..+.... +....+++.+.++.++.+.+..
T Consensus       170 ~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~  228 (229)
T COG1011         170 PPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLER  228 (229)
T ss_pred             CcceEEEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHhh
Confidence            999999999999 88899999999999998875332 2225778899999999887653

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.86  E-value=9e-21  Score=133.35  Aligned_cols=103  Identities=25%  Similarity=0.416  Sum_probs=96.1

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++|++++++||++...+...+.+ +|+..+|+.+++++   +.+..||++..|+.++++++  
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~-~~~~~~f~~i~~~~---~~~~~Kp~~~~~~~~~~~~~--  147 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLER-LGLDDYFDEIISSD---DVGSRKPDPDAYRRALEKLG--  147 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHH-TTHGGGCSEEEEGG---GSSSSTTSHHHHHHHHHHHT--
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCcccccccccc-cccccccccccccc---hhhhhhhHHHHHHHHHHHcC--
Confidence            4678999999999999999999999999998877666655 69999999999999   88999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      ++|++|+||||+..|+.+|+++|+.+|+|
T Consensus       148 ~~p~~~~~vgD~~~d~~~A~~~G~~~i~v  176 (176)
T PF13419_consen  148 IPPEEILFVGDSPSDVEAAKEAGIKTIWV  176 (176)
T ss_dssp             SSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred             CCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence            99999999999999999999999999986

...

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.86  E-value=1.2e-20  Score=134.26  Aligned_cols=100  Identities=32%  Similarity=0.584  Sum_probs=91.9

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++.|++++|+||+.... ... ..++|+..+|+.+++++   +...+||+|..|+.++++++  ++
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~-~~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~--~~  156 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVL-VQELGLRDLFDVVIFSG---DVGRGKPDPDIYLLALKKLG--LK  156 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHH-HHhcCCHHHCCEEEEcC---CCCCCCCCHHHHHHHHHHcC--CC
Confidence            5889999999999999999999999999776 333 34479999999999998   88899999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      |++|+||||+..|+.+|+++|+.+|+|
T Consensus       157 ~~~~~~vgD~~~di~aA~~~G~~~i~v  183 (183)
T TIGR01509       157 PEECLFVDDSPAGIEAAKAAGMHTVLV  183 (183)
T ss_pred             cceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence            999999999999999999999999875

HAD subfamilies caused by an overly broad single model.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.86  E-value=5.2e-21  Score=138.57  Aligned_cols=106  Identities=12%  Similarity=0.257  Sum_probs=95.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|+++|++++|+||+........+....++..+||.+++++   +.+..||+|+.|+.++++++  ++
T Consensus        83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~---~~~~~KP~p~~~~~~~~~~~--~~  157 (199)
T PRK09456         83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQ---DLGMRKPEARIYQHVLQAEG--FS  157 (199)
T ss_pred             hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEec---ccCCCCCCHHHHHHHHHHcC--CC
Confidence            45899999999999999999999999987765443333347889999999999   89999999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      |++|+||||+..|+.+|+++|+.++++.++.
T Consensus       158 p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~  188 (199)
T PRK09456        158 AADAVFFDDNADNIEAANALGITSILVTDKQ  188 (199)
T ss_pred             hhHeEEeCCCHHHHHHHHHcCCEEEEecCCc
Confidence            9999999999999999999999999998764

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.85  E-value=3.5e-20  Score=132.37  Aligned_cols=100  Identities=36%  Similarity=0.563  Sum_probs=91.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++++||+  ..+... .+.+|+..+|+.+++++   .....||+|.+|..++++++  +
T Consensus        86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~-l~~~~l~~~f~~v~~~~---~~~~~kp~~~~~~~~~~~~~--~  157 (185)
T TIGR02009        86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRI-LAKLGLTDYFDAIVDAD---EVKEGKPHPETFLLAAELLG--V  157 (185)
T ss_pred             CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHH-HHHcChHHHCCEeeehh---hCCCCCCChHHHHHHHHHcC--C
Confidence            4789999999999999999999999998  345444 45579999999999998   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      ++++++||||+.+|+++|+++|+++++|
T Consensus       158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v  185 (185)
T TIGR02009       158 SPNECVVFEDALAGVQAARAAGMFAVAV  185 (185)
T ss_pred             CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence            9999999999999999999999999875

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.84  E-value=5.3e-20  Score=148.50  Aligned_cols=129  Identities=16%  Similarity=0.144  Sum_probs=111.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+++||+.++|++|+++|++++|+||+....+...+ +++|+..||+.+++++   ++. .||+|..+..++++++   
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d---~v~-~~~kP~~~~~al~~l~---  399 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIE---QIN-SLNKSDLVKSILNKYD---  399 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecC---CCC-CCCCcHHHHHHHHhcC---
Confidence            4688999999999999999999999999988886665 5579999999999998   653 4677889999998887   


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                       +++|++|||+.+|+.+|+++|+.++++.++.........++++++++.++..++...
T Consensus       400 -~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~~~  456 (459)
T PRK06698        400 -IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILSTV  456 (459)
T ss_pred             -cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHHHH
Confidence             689999999999999999999999999998654443457899999999999887644

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.84  E-value=3.2e-20  Score=134.64  Aligned_cols=99  Identities=24%  Similarity=0.378  Sum_probs=90.1

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|+++|++++|+||+... .... .+.+|+..+|+.+++++   +.+..||+|.+|+.++++++  ++
T Consensus       104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~-l~~~~l~~~fd~i~~s~---~~~~~KP~~~~~~~~~~~~~--~~  176 (203)
T TIGR02252       104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGL-LEALGLLEYFDFVVTSY---EVGAEKPDPKIFQEALERAG--IS  176 (203)
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHH-HHHCCcHHhcceEEeec---ccCCCCCCHHHHHHHHHHcC--CC
Confidence            578999999999999999999999998754 4444 45579999999999999   88899999999999999999  99


Q ss_pred             CCceEEEecCH-hHHHHHHHcCCeEEE
Q psy6288         104 PSKCLVFEDAP-NGVLGAKAAGMSCVM  129 (166)
Q Consensus       104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~  129 (166)
                      |++|+||||+. +|+.+|+++|+.+|+
T Consensus       177 ~~~~~~IgD~~~~Di~~A~~aG~~~i~  203 (203)
T TIGR02252       177 PEEALHIGDSLRNDYQGARAAGWRALL  203 (203)
T ss_pred             hhHEEEECCCchHHHHHHHHcCCeeeC
Confidence            99999999998 899999999999874

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=133.76  Aligned_cols=132  Identities=37%  Similarity=0.576  Sum_probs=111.6

Q ss_pred             hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ......+.||+.++|+.|++.|+++++.|++.+..+...+ +..|+.++|+.+++++   ++..+||.|+.|..+++++|
T Consensus        81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~---dv~~~KP~Pd~yL~Aa~~Lg  156 (221)
T COG0637          81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTAD---DVARGKPAPDIYLLAAERLG  156 (221)
T ss_pred             hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHH---HHhcCCCCCHHHHHHHHHcC
Confidence            3345789999999999999999999999999987775555 5579999999999999   88899999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC---cc-cccccchhhCChhhhhhhh
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP---KH-RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~---~~-~~~~~~~~~~~~~~l~~~l  157 (166)
                        ++|++|+.|+|+++++++|+++||.++++..+...   .. .....+....++.++...+
T Consensus       157 --v~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  216 (221)
T COG0637         157 --VDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPALL  216 (221)
T ss_pred             --CChHHeEEEecchhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHHHHHH
Confidence              99999999999999999999999999999985332   11 3345566667777666544

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.83  E-value=5e-20  Score=134.40  Aligned_cols=105  Identities=22%  Similarity=0.314  Sum_probs=92.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhh--HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES--FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++||+.++|+.|+++|++++|+||+....  ....+ ...++..+||.+++++   +.+..||+|.+|+.++++++ 
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~---~~~~~KP~p~~~~~~~~~~g-  166 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESC---LEGLRKPDPRIYQLMLERLG-  166 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEee---ecCCCCCCHHHHHHHHHHcC-
Confidence            46789999999999999999999999987543  22222 2357889999999998   88889999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                       ++|++|+||||+..|+.+|+++|+.++++.++
T Consensus       167 -~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~  198 (211)
T TIGR02247       167 -VAPEECVFLDDLGSNLKPAAALGITTIKVSDE  198 (211)
T ss_pred             -CCHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence             99999999999999999999999999999765

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.83  E-value=1.2e-19  Score=127.19  Aligned_cols=106  Identities=15%  Similarity=0.215  Sum_probs=89.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCc---------------hhhHHHHHhhhcCcccccceEE-e----cCCCCCcc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSA---------------KESFELKTSRHKDTLKLFHHVV-L----GSADPEVK   82 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---------------~~~~~~~l~~~~gl~~~fd~v~-~----~~~~~~~~   82 (166)
                      ...++||+.++|++|+++|++++|+||.+               ...+ ..+.+.+|+.  |+.++ +    ++   +..
T Consensus        27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~-~~~l~~~gl~--fd~ii~~~~~~~~---~~~  100 (161)
T TIGR01261        27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLM-LQIFRSQGII--FDDVLICPHFPDD---NCD  100 (161)
T ss_pred             HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHH-HHHHHHCCCc--eeEEEECCCCCCC---CCC
Confidence            46789999999999999999999999974               2233 3344556885  77654 4    35   678


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                      ..||++.++..++++++  +++++|+||||+.+|+.+|+++|+.++++.++.-.
T Consensus       101 ~~KP~~~~~~~~~~~~~--~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~~~  152 (161)
T TIGR01261       101 CRKPKIKLLEPYLKKNL--IDKARSYVIGDRETDMQLAENLGIRGIQYDEEELN  152 (161)
T ss_pred             CCCCCHHHHHHHHHHcC--CCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhhcC
Confidence            89999999999999999  99999999999999999999999999999888543

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.83  E-value=1.9e-19  Score=131.98  Aligned_cols=122  Identities=14%  Similarity=0.108  Sum_probs=98.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc---CcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK---DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~---gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ...++||+.++|++|+++|++++|+||++.......+ ++.   ++..+|+.++...     ...||+|+.|..++++++
T Consensus        93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~~-----~g~KP~p~~y~~i~~~lg  166 (220)
T TIGR01691        93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDTT-----VGLKTEAQSYVKIAGQLG  166 (220)
T ss_pred             ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEeC-----cccCCCHHHHHHHHHHhC
Confidence            4679999999999999999999999999977664444 333   6777888777533     236999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cc-cccchhhCChhh
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RT-EAADLVLNSLEE  152 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~-~~~~~~~~~~~~  152 (166)
                        ++|++|+||||+..|+.+|+++|+.++++.++..... .. .....++.||.+
T Consensus       167 --v~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~  219 (220)
T TIGR01691       167 --SPPREILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA  219 (220)
T ss_pred             --cChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence              9999999999999999999999999999998864422 11 222556777765

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.82  E-value=3.1e-19  Score=155.37  Aligned_cols=126  Identities=29%  Similarity=0.426  Sum_probs=111.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-cccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++||+.++|+.|+++|++++|+||.....+...+ +++|+. .+|+.+++++   +....||+|++|..++++++  +
T Consensus       160 ~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~---~~~~~KP~Pe~~~~a~~~lg--v  233 (1057)
T PLN02919        160 GIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSAD---AFENLKPAPDIFLAAAKILG--V  233 (1057)
T ss_pred             CccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECc---ccccCCCCHHHHHHHHHHcC--c
Confidence            347999999999999999999999999988776665 446996 7899999999   88899999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKP  155 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~  155 (166)
                      +|++||||||+..|+++|+++|+.+|+|.++....+ ....++++++++.++..
T Consensus       234 ~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~  287 (1057)
T PLN02919        234 PTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISL  287 (1057)
T ss_pred             CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCH
Confidence            999999999999999999999999999999864433 34578899999999853

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.82  E-value=8.5e-20  Score=126.32  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=84.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEe----cCCCCCccC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVL----GSADPEVKQ   83 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~----~~~~~~~~~   83 (166)
                      ...++||+.++|+.|+++|++++|+||+..               ..+. .+.+++|+... ..+++    ++   ....
T Consensus        25 ~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~-~~~~~~~~~~~---~~~~   99 (147)
T TIGR01656        25 DWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVL-ELLRQLGVAVD-GVLFCPHHPAD---NCSC   99 (147)
T ss_pred             HeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHH-HHHHhCCCcee-EEEECCCCCCC---CCCC
Confidence            357899999999999999999999999873               2232 33455677521 12222    33   4566


Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      .||+|++|+.++++++  +++++|+||||+..|+++|+++|+.++++.+|
T Consensus       100 ~KP~~~~~~~~~~~~~--~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~  147 (147)
T TIGR01656       100 RKPKPGLILEALKRLG--VDASRSLVVGDRLRDLQAARNAGLAAVLLVDG  147 (147)
T ss_pred             CCCCHHHHHHHHHHcC--CChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence            7999999999999999  99999999999999999999999999999764

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.82  E-value=4.5e-19  Score=127.04  Aligned_cols=101  Identities=34%  Similarity=0.492  Sum_probs=91.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++|+ .+.|+.|++. ++++|+||+....+...+.+ +|+..||+.+++++   +....||+|++|..++++++  +
T Consensus        86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~-~~l~~~fd~i~~~~---~~~~~KP~p~~~~~~~~~~~--~  157 (188)
T PRK10725         86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAH-LGLRRYFDAVVAAD---DVQHHKPAPDTFLRCAQLMG--V  157 (188)
T ss_pred             cCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHh-CCcHhHceEEEehh---hccCCCCChHHHHHHHHHcC--C
Confidence            4567886 5899999875 89999999998877666655 69999999999999   88899999999999999999  8


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      ++++||||||+.+|+++|+++|+++|+|.
T Consensus       158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~  186 (188)
T PRK10725        158 QPTQCVVFEDADFGIQAARAAGMDAVDVR  186 (188)
T ss_pred             CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence            99999999999999999999999999985

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.80  E-value=4.7e-19  Score=126.71  Aligned_cols=99  Identities=19%  Similarity=0.233  Sum_probs=89.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccC----CCCChHHHHHHHHHc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ----GKPAPDVFLVAAKRF   98 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~----~Kp~~~~~~~~~~~~   98 (166)
                      ...++||+.++|+.|+   ++++|+||++...+...+ +.+|+..+|+.+++++   +...    .||+|++|+.+++++
T Consensus        82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~---~~~~~~~~~KP~p~~~~~~~~~~  154 (184)
T TIGR01993        82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFD---TANPDYLLPKPSPQAYEKALREA  154 (184)
T ss_pred             hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEee---cccCccCCCCCCHHHHHHHHHHh
Confidence            3568999999999998   589999999988886665 4469999999999998   7666    599999999999999


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      +  ++|++|+||||+.+|+.+|+++|+++++|
T Consensus       155 ~--~~~~~~l~vgD~~~di~aA~~~G~~~i~v  184 (184)
T TIGR01993       155 G--VDPERAIFFDDSARNIAAAKALGMKTVLV  184 (184)
T ss_pred             C--CCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence            9  99999999999999999999999999875

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.80  E-value=3.7e-19  Score=125.73  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcCcc---------cccceEEecCCCCCccCCCCChHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKDTL---------KLFHHVVLGSADPEVKQGKPAPDVFL   92 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~gl~---------~~fd~v~~~~~~~~~~~~Kp~~~~~~   92 (166)
                      ...++||+.++|+.|+++|++++|+||+ ....+ ..+...+++.         .+|+.+++++   .....||.+..++
T Consensus        43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~-~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~---~~~~~kp~~~i~~  118 (174)
T TIGR01685        43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWA-YEILGTFEITYAGKTVPMHSLFDDRIEIY---KPNKAKQLEMILQ  118 (174)
T ss_pred             EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHH-HHHHHhCCcCCCCCcccHHHhceeeeecc---CCchHHHHHHHHH
Confidence            4688999999999999999999999998 65555 4445667888         9999999998   6666777788888


Q ss_pred             HHHHHc--CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288          93 VAAKRF--DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTV  135 (166)
Q Consensus        93 ~~~~~~--~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~  135 (166)
                      .+.+.+  +  ++|++|+||||+..|+.+|+++|+.++++.++..
T Consensus       119 ~~~~~~~~g--l~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~  161 (174)
T TIGR01685       119 KVNKVDPSV--LKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMD  161 (174)
T ss_pred             HhhhcccCC--CCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCcc
Confidence            888888  7  8999999999999999999999999999998853

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>KOG3085|consensus

Probab=99.78  E-value=7.7e-19  Score=128.56  Aligned_cols=110  Identities=22%  Similarity=0.334  Sum_probs=98.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ..+...+++.++++.|+++|..++++||.+.. .. .++..+|+..|||.++.|.   ..+..||+|.+|+.++++++  
T Consensus       110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~-~~l~~~~l~~~fD~vv~S~---e~g~~KPDp~If~~al~~l~--  182 (237)
T KOG3085|consen  110 SAWKYLDGMQELLQKLRKKGTILGIISNFDDR-LR-LLLLPLGLSAYFDFVVESC---EVGLEKPDPRIFQLALERLG--  182 (237)
T ss_pred             cCceeccHHHHHHHHHHhCCeEEEEecCCcHH-HH-HHhhccCHHHhhhhhhhhh---hhccCCCChHHHHHHHHHhC--
Confidence            35778899999999999999999999999855 43 4555579999999999999   99999999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH  138 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~  138 (166)
                      +.|++|++|||+. +|+++|+++|+.+++|..+.+...
T Consensus       183 v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~  220 (237)
T KOG3085|consen  183 VKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALK  220 (237)
T ss_pred             CChHHeEEecCccccccHhHHHcCCEEEEEccccchhh
Confidence            9999999999999 999999999999999987754433

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.75  E-value=3e-17  Score=114.07  Aligned_cols=94  Identities=24%  Similarity=0.371  Sum_probs=84.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      .....+||+.++|+.|+++|++++|+||+....+...+. .+ +..+|+.+++++   +.. .||+|++|..++++++  
T Consensus        61 ~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~-~~-l~~~f~~i~~~~---~~~-~Kp~~~~~~~~~~~~~--  132 (154)
T TIGR01549        61 AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLR-KH-LGDYFDLILGSD---EFG-AKPEPEIFLAALESLG--  132 (154)
T ss_pred             hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHH-HH-HHhcCcEEEecC---CCC-CCcCHHHHHHHHHHcC--
Confidence            345678999999999999999999999999888765554 44 788999999988   777 9999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAG  124 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G  124 (166)
                      +++ +|+||||+..|+.+|+++|
T Consensus       133 ~~~-~~l~iGDs~~Di~aa~~aG  154 (154)
T TIGR01549       133 LPP-EVLHVGDNLNDIEGARNAG  154 (154)
T ss_pred             CCC-CEEEEeCCHHHHHHHHHcc
Confidence            888 9999999999999999987

HAD subfamilies caused by an overly broad single model.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.75  E-value=3.5e-17  Score=118.30  Aligned_cols=92  Identities=16%  Similarity=0.259  Sum_probs=82.2

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      .+.++..++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++   +... ||+|..+..++++++  +++
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~---~~~~-KP~p~~~~~~~~~~~--~~~  178 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWME---DCPP-KPNPEPLILAAKALG--VEA  178 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeec---CCCC-CcCHHHHHHHHHHhC--cCc
Confidence            45556699999999999999999999988776555 5579999999999998   7666 999999999999999  999


Q ss_pred             CceEEEecCHhHHHHHHHc
Q psy6288         105 SKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus       105 ~~~i~IGD~~~Di~~a~~~  123 (166)
                      ++|+||||+.+|+.+|+++
T Consensus       179 ~~~i~vGD~~~Di~aA~~a  197 (197)
T TIGR01548       179 CHAAMVGDTVDDIITGRKA  197 (197)
T ss_pred             ccEEEEeCCHHHHHHHHhC
Confidence            9999999999999999874

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>KOG2914|consensus

Probab=99.75  E-value=3.1e-17  Score=119.58  Aligned_cols=144  Identities=53%  Similarity=0.807  Sum_probs=121.4

Q ss_pred             HHHHHHhhhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCCh
Q psy6288           9 YVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP   88 (166)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~   88 (166)
                      +..+....+........+.||+..+++.|+.+|++++++|+.....+..++.++-++...|+.++.++ ++++..+||+|
T Consensus        76 ~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d-~~~v~~gKP~P  154 (222)
T KOG2914|consen   76 FNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGD-DPEVKNGKPDP  154 (222)
T ss_pred             HHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecC-CccccCCCCCc
Confidence            34445555666777889999999999999999999999999998999889888755888898888844 34889999999


Q ss_pred             HHHHHHHHHcCCCCCC-CceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhh
Q psy6288          89 DVFLVAAKRFDEKPQP-SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKP  155 (166)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~  155 (166)
                      ++|..+++.++  .++ ++||+++|++..+++|+++|+++|++.+..-.......++.+++++.+..+
T Consensus       155 di~l~A~~~l~--~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~  220 (222)
T KOG2914|consen  155 DIYLKAAKRLG--VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFKP  220 (222)
T ss_pred             hHHHHHHHhcC--CCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccCc
Confidence            99999999999  777 999999999999999999999999998854334455677778888777654

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.75  E-value=1.6e-17  Score=112.81  Aligned_cols=98  Identities=20%  Similarity=0.265  Sum_probs=82.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCc--------hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSA--------KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAA   95 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~--------~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~   95 (166)
                      ..++||+.++|+.|++.|++++|+||+.        ...+...+ +++++..  +..+.+.     ...||++++|+.++
T Consensus        24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~~--~~~~~~~-----~~~KP~~~~~~~~~   95 (132)
T TIGR01662        24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVPI--DVLYACP-----HCRKPKPGMFLEAL   95 (132)
T ss_pred             heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCCE--EEEEECC-----CCCCCChHHHHHHH
Confidence            5789999999999999999999999998        66564444 5467753  3333322     35799999999999


Q ss_pred             HHc-CCCCCCCceEEEec-CHhHHHHHHHcCCeEEEec
Q psy6288          96 KRF-DEKPQPSKCLVFED-APNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus        96 ~~~-~~~~~~~~~i~IGD-~~~Di~~a~~~G~~~i~v~  131 (166)
                      +++ +  +++++++|||| +..|+.+|+++|+.+|++.
T Consensus        96 ~~~~~--~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~  131 (132)
T TIGR01662        96 KRFNE--IDPEESVYVGDQDLTDLQAAKRAGLAFILVA  131 (132)
T ss_pred             HHcCC--CChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence            999 8  89999999999 6899999999999999985

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.74  E-value=3.7e-17  Score=119.86  Aligned_cols=133  Identities=17%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEe-------cCCCCCccCCCCChHH
Q psy6288          18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVL-------GSADPEVKQGKPAPDV   90 (166)
Q Consensus        18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~-------~~~~~~~~~~Kp~~~~   90 (166)
                      .......+++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+..+.       +........++|++..
T Consensus        78 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~  156 (219)
T TIGR00338        78 KEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKT  156 (219)
T ss_pred             HHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHH
Confidence            334445789999999999999999999999999977665444 55799888854322       1100012335678999


Q ss_pred             HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288          91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL  157 (166)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l  157 (166)
                      ++.++++++  +++++|+||||+.+|+.+|+++|+..++ . +  .......+++++.  ++.++.++|
T Consensus       157 ~~~~~~~~~--~~~~~~i~iGDs~~Di~aa~~ag~~i~~-~-~--~~~~~~~a~~~i~~~~~~~~~~~~  219 (219)
T TIGR00338       157 LLILLRKEG--ISPENTVAVGDGANDLSMIKAAGLGIAF-N-A--KPKLQQKADICINKKDLTDILPLL  219 (219)
T ss_pred             HHHHHHHcC--CCHHHEEEEECCHHHHHHHHhCCCeEEe-C-C--CHHHHHhchhccCCCCHHHHHhhC
Confidence            999999999  9999999999999999999999998543 2 1  2223456777766  777777654

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.73  E-value=5.5e-17  Score=114.83  Aligned_cols=101  Identities=17%  Similarity=0.138  Sum_probs=83.6

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++.|++++|+||++.......+.+.+|+..++            ...||++.+|..++++++  ++
T Consensus        42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~------------~~~KP~p~~~~~~l~~~~--~~  107 (170)
T TIGR01668        42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP------------HAVKPPGCAFRRAHPEMG--LT  107 (170)
T ss_pred             CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc------------CCCCCChHHHHHHHHHcC--CC
Confidence            4789999999999999999999999998322323444445554321            235999999999999999  99


Q ss_pred             CCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc
Q psy6288         104 PSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH  138 (166)
Q Consensus       104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~  138 (166)
                      +++|+||||+. +|+.+|+++|+.+++|.++....+
T Consensus       108 ~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~  143 (170)
T TIGR01668       108 SEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQ  143 (170)
T ss_pred             HHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCcc
Confidence            99999999998 799999999999999999975544

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PHA02597 30

Probab=99.73  E-value=1.3e-16  Score=115.30  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc----ccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK----LFHHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~----~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ....++||+.++|+.|++. ++++++||...... ..+.+.+++..    +|+.+++++   .   .||+|+.+..++++
T Consensus        71 ~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~-~~~~~~~~l~~~f~~~f~~i~~~~---~---~~~kp~~~~~a~~~  142 (197)
T PHA02597         71 RYLSAYDDALDVINKLKED-YDFVAVTALGDSID-ALLNRQFNLNALFPGAFSEVLMCG---H---DESKEKLFIKAKEK  142 (197)
T ss_pred             HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchh-HHHHhhCCHHHhCCCcccEEEEec---c---CcccHHHHHHHHHH
Confidence            3467999999999999987 57888888765443 33344456665    456777777   3   36779999999999


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHc--CCeEEEecCCCCCcccccccchhhCChhhhhh
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAA--GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKP  155 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~  155 (166)
                      ++    +++++||||+..|+.+|+++  |++++++.|+..  .....+++.++++.|+.+
T Consensus       143 ~~----~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~~  196 (197)
T PHA02597        143 YG----DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIEN  196 (197)
T ss_pred             hC----CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHhc
Confidence            98    79999999999999999999  999999999954  434566688999988764

2 hypothetical protein; Provisional

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=99.72  E-value=5.1e-18  Score=128.94  Aligned_cols=126  Identities=21%  Similarity=0.234  Sum_probs=97.3

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      .-++++.++++.|++.|. ++|+||.+............|...+|+.+....+......+||+|.+|..++++++  +++
T Consensus       143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~--~~~  219 (279)
T TIGR01452       143 FSYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFS--IDP  219 (279)
T ss_pred             CCHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhC--CCh
Confidence            348999999999998887 88999987543211222334666777665432111145678999999999999999  999


Q ss_pred             CceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----------ccccchhhCChhhh
Q psy6288         105 SKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----------TEAADLVLNSLEEF  153 (166)
Q Consensus       105 ~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----------~~~~~~~~~~~~~l  153 (166)
                      ++|+||||++ +||.+|+++|+.+++|.||....+.          ...|+++++++.++
T Consensus       220 ~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l  279 (279)
T TIGR01452       220 ARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL  279 (279)
T ss_pred             hhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence            9999999996 9999999999999999999765442          13689999998774

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.70  E-value=2.4e-17  Score=123.80  Aligned_cols=131  Identities=18%  Similarity=0.137  Sum_probs=105.3

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      ..++++.++++.|++.+++++++||.+....... ....|+..+|+.+.++........+||+|.+|+.++++++  .++
T Consensus       120 ~~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~-~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~--~~~  196 (257)
T TIGR01458       120 FSYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKD-GLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATG--CEP  196 (257)
T ss_pred             cCHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCC-CCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhC--CCh
Confidence            3478999999999999999999999876544222 3446888888877665411123347999999999999999  999


Q ss_pred             CceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc----cccccchhhCChhhhhhhhc
Q psy6288         105 SKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH----RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       105 ~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~----~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++++||||+. +|+.+|+++|+.+++|.+|.....    ....|+++++++.++.++++
T Consensus       197 ~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l~  255 (257)
T TIGR01458       197 EEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLIL  255 (257)
T ss_pred             hhEEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHHh
Confidence            9999999997 999999999999999999863322    23578999999999998764

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=99.70  E-value=2.8e-16  Score=122.10  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=85.7

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCc---------------hhhHHHHHhhhcCcccccceEEec-----CCCCCc
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSA---------------KESFELKTSRHKDTLKLFHHVVLG-----SADPEV   81 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---------------~~~~~~~l~~~~gl~~~fd~v~~~-----~~~~~~   81 (166)
                      ....++||+.++|++|+++|++++|+||++               ...+ ..+.+.+|+  +|+.++.+     +   +.
T Consensus        27 ~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i-~~iL~~~gl--~fd~i~i~~~~~sd---~~  100 (354)
T PRK05446         27 DKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLM-MQIFESQGI--KFDEVLICPHFPED---NC  100 (354)
T ss_pred             ccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHH-HHHHHHcCC--ceeeEEEeCCcCcc---cC
Confidence            357899999999999999999999999962               2222 233344566  36665433     3   56


Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      ..+||+|.++..++++++  +++++++||||+.+|+++|+++|++++++...
T Consensus       101 ~~rKP~p~~l~~a~~~l~--v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~  150 (354)
T PRK05446        101 SCRKPKTGLVEEYLAEGA--IDLANSYVIGDRETDVQLAENMGIKGIRYARE  150 (354)
T ss_pred             CCCCCCHHHHHHHHHHcC--CCcccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence            788999999999999999  99999999999999999999999999999654

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.70  E-value=1.6e-16  Score=112.01  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=80.6

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchh------------hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKE------------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~------------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~   93 (166)
                      ++||+.++|+.|++.|++++|+||++..            .+ ..+.+++|+..  +.+++++   .....||+|.++..
T Consensus        43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i-~~~l~~~gl~~--~~ii~~~---~~~~~KP~p~~~~~  116 (166)
T TIGR01664        43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKI-EAFLEKLKVPI--QVLAATH---AGLYRKPMTGMWEY  116 (166)
T ss_pred             ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHH-HHHHHHcCCCE--EEEEecC---CCCCCCCccHHHHH
Confidence            6899999999999999999999998753            23 33445568743  5667766   56678999999999


Q ss_pred             HHHHcCCCCCCCceEEEecCH--------hHHHHHHHcCCeEEE
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAP--------NGVLGAKAAGMSCVM  129 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~--------~Di~~a~~~G~~~i~  129 (166)
                      ++++++..+++++++||||+.        +|+++|+++|+.+++
T Consensus       117 ~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~  160 (166)
T TIGR01664       117 LQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY  160 (166)
T ss_pred             HHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence            999997226899999999986        799999999998864

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.2e-16  Score=118.27  Aligned_cols=154  Identities=25%  Similarity=0.385  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceE--------
Q psy6288           5 QVLNYVTHVIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHV--------   72 (166)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v--------   72 (166)
                      ++.+.+..++.|+++.+. ...++||+.++|++|+++|.+++++||++...   ...++...++++...+.+        
T Consensus         3 ~~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~   82 (269)
T COG0647           3 DVMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATA   82 (269)
T ss_pred             chhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHH
Confidence            345556667788888666 46799999999999999999999999997443   334444433442222222        


Q ss_pred             -------------------------------------------Eec--------------------------CCC-----
Q psy6288          73 -------------------------------------------VLG--------------------------SAD-----   78 (166)
Q Consensus        73 -------------------------------------------~~~--------------------------~~~-----   78 (166)
                                                                 +-+                          ..|     
T Consensus        83 ~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p~  162 (269)
T COG0647          83 DYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVPT  162 (269)
T ss_pred             HHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCccccC
Confidence                                                       000                          000     


Q ss_pred             ---------------------CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCC
Q psy6288          79 ---------------------PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus        79 ---------------------~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                                           .-...+||++.+|+.++++++  .++++++||||++ +||.+|.++|+.+++|.+|.+.
T Consensus       163 ~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~--~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~  240 (269)
T COG0647         163 ERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLG--LDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSS  240 (269)
T ss_pred             CCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhC--CCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCC
Confidence                                 013569999999999999999  8999999999999 9999999999999999999875


Q ss_pred             cc----cccccchhhCChhhhhhhhcCC
Q psy6288         137 KH----RTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       137 ~~----~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      .+    ....|+++++++.++...+..+
T Consensus       241 ~~~~~~~~~~p~~v~~sl~~~~~~~~~~  268 (269)
T COG0647         241 AEDLDRAEVKPTYVVDSLAELITALKEL  268 (269)
T ss_pred             hhhhhhhccCCcchHhhHHHHHhhhhcc
Confidence            44    2357899999999998876543

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.67  E-value=4e-16  Score=119.58  Aligned_cols=107  Identities=12%  Similarity=0.020  Sum_probs=92.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCC----CccCCCCChHHHHHHHHHc
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADP----EVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~----~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ..++||+.++|+.|++.|++++++||.+.... ..+.+++++.. +|+.+++.+...    +....||+|.++..+++++
T Consensus       186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~-~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~  264 (300)
T PHA02530        186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCE-EDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK  264 (300)
T ss_pred             CCCChhHHHHHHHHHhCCCEEEEEeCCChhhH-HHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence            57899999999999999999999999997765 45556678886 899888877100    1335799999999999999


Q ss_pred             CCCC-CCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          99 DEKP-QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        99 ~~~~-~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +  . ++++|+||||+..|+.+|+++|+.+++|.||
T Consensus       265 ~--~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g  298 (300)
T PHA02530        265 I--APKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG  298 (300)
T ss_pred             h--ccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence            8  7 6799999999999999999999999999987

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=99.67  E-value=8.7e-17  Score=113.98  Aligned_cols=89  Identities=15%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+       +++|+||++...+...+ +++|+..+|+.+++++   +++..||+|..|+.+++++|  
T Consensus        87 ~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~---~~~~~KP~p~~f~~~~~~~~--  153 (175)
T TIGR01493        87 KNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVD---TVRAYKPDPVVYELVFDTVG--  153 (175)
T ss_pred             hcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHh---hcCCCCCCHHHHHHHHHHHC--
Confidence            45779999999998       38899999988776665 5569999999999999   88899999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHc
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~  123 (166)
                      ++|++|+||||+.+|+.+|+++
T Consensus       154 ~~p~~~l~vgD~~~Di~~A~~~  175 (175)
T TIGR01493       154 LPPDRVLMVAAHQWDLIGARKF  175 (175)
T ss_pred             CCHHHeEeEecChhhHHHHhcC
Confidence            9999999999999999999863

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=99.66  E-value=3.8e-16  Score=96.02  Aligned_cols=69  Identities=30%  Similarity=0.531  Sum_probs=62.8

Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecC-HhHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhh
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDA-PNGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEF  153 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~-~~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l  153 (166)
                      ++||+|.+|..++++++  +++++++||||+ .+||.+|+++|+.+++|.+|....+.    ...|+++++++.|+
T Consensus         2 ~gKP~p~~~~~a~~~~~--~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~   75 (75)
T PF13242_consen    2 CGKPSPGMLEQALKRLG--VDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA   75 (75)
T ss_dssp             CSTTSHHHHHHHHHHHT--SGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred             CCCCcHHHHHHHHHHcC--CCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence            57999999999999999  999999999999 79999999999999999999766542    36899999999885

...

>PLN02954 phosphoserine phosphatase

Probab=99.65  E-value=1.8e-15  Score=111.24  Aligned_cols=129  Identities=10%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc--cccceEEec--------C-CCCCccCCCCChHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHHVVLG--------S-ADPEVKQGKPAPDVFL   92 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~--~~fd~v~~~--------~-~~~~~~~~Kp~~~~~~   92 (166)
                      ..++||+.++|+.|+++|++++|+|++....+... .+.+|+.  .+|+..+..        . ........++++..++
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~-l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~  161 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPV-AAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ  161 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHH-HHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence            56899999999999999999999999998877554 4557886  456432211        1 0000123567889999


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhh
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l  157 (166)
                      .++++++  .  ++|+||||+.+|+.+|+++|+..+...++....+ ....++++++++.++.+++
T Consensus       162 ~~~~~~~--~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~~  223 (224)
T PLN02954        162 HIKKKHG--Y--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIEVL  223 (224)
T ss_pred             HHHHHcC--C--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHHhh
Confidence            9999988  4  6899999999999998888887655433332222 3456899999999998754

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.65  E-value=1.6e-15  Score=109.47  Aligned_cols=110  Identities=12%  Similarity=0.102  Sum_probs=88.6

Q ss_pred             hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCC----------C
Q psy6288          18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKP----------A   87 (166)
Q Consensus        18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp----------~   87 (166)
                      ........++||+.++|+.|+++|++++|+|++....+...+ +.+|+..+|+..+..+   +.+..+|          +
T Consensus        73 ~~~~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~---~~g~~~p~~~~~~~~~~k  148 (201)
T TIGR01491        73 EEIFKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFD---EKGFIQPDGIVRVTFDNK  148 (201)
T ss_pred             HHHHHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEc---CCCeEecceeeEEccccH
Confidence            334456789999999999999999999999999977665554 5578888887766654   3333232          3


Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      ...+..++++++  +++++++||||+.+|+.+|+.+|+..+....+
T Consensus       149 ~~~~~~~~~~~~--~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~  192 (201)
T TIGR01491       149 GEAVERLKRELN--PSLTETVAVGDSKNDLPMFEVADISISLGDEG  192 (201)
T ss_pred             HHHHHHHHHHhC--CCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence            468889999999  89999999999999999999999988777655

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=99.64  E-value=2.4e-15  Score=106.17  Aligned_cols=127  Identities=19%  Similarity=0.298  Sum_probs=98.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCc---------------hhhHHHHHhhhcCcccccceEEecCCCC--CccCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSA---------------KESFELKTSRHKDTLKLFHHVVLGSADP--EVKQGK   85 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---------------~~~~~~~l~~~~gl~~~fd~v~~~~~~~--~~~~~K   85 (166)
                      .+.+.||+.+++..|++.||+++|+||.+               ...+...+.+ .|.  -||.++.|.-.+  .+.++|
T Consensus        29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~-~gv--~id~i~~Cph~p~~~c~cRK  105 (181)
T COG0241          29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILAS-QGV--KIDGILYCPHHPEDNCDCRK  105 (181)
T ss_pred             HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHH-cCC--ccceEEECCCCCCCCCcccC
Confidence            37889999999999999999999999964               1112222222 233  577777775333  368899


Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhh
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFK  154 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~  154 (166)
                      |++.++..++++++  +++++.++|||..+|+++|.++|++.+.+.++..... .....+.+.+++.++.
T Consensus       106 P~~gm~~~~~~~~~--iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (181)
T COG0241         106 PKPGMLLSALKEYN--IDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA  173 (181)
T ss_pred             CChHHHHHHHHHhC--CCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence            99999999999999  9999999999999999999999999888877754432 2225567777877776

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.64  E-value=2.7e-15  Score=101.01  Aligned_cols=101  Identities=27%  Similarity=0.300  Sum_probs=89.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCC----------------CCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG----------------KPA   87 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~----------------Kp~   87 (166)
                      ..+++++.++|+.|+++|++++++|++....+...+.+ +|+..+|+.++++.   .....                ||+
T Consensus        23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~-~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   98 (139)
T cd01427          23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEE-LGLDDYFDPVITSN---GAAIYYPKEGLFLGGGPFDIGKPN   98 (139)
T ss_pred             CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHH-cCCchhhhheeccc---hhhhhcccccccccccccccCCCC
Confidence            47899999999999999999999999998877666644 68888888888876   44433                999


Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      +..+..++++++  ..++++++|||+.+|+.+|+++|+.+++|
T Consensus        99 ~~~~~~~~~~~~--~~~~~~~~igD~~~d~~~~~~~g~~~i~v  139 (139)
T cd01427          99 PDKLLAALKLLG--VDPEEVLMVGDSLNDIEMAKAAGGLGVAV  139 (139)
T ss_pred             HHHHHHHHHHcC--CChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence            999999999999  88999999999999999999999998875

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.63  E-value=4.6e-15  Score=109.75  Aligned_cols=101  Identities=12%  Similarity=0.026  Sum_probs=83.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCC----chhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSS----AKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~----~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ...+++++.++|+.++++|++++++||.    ....+ ..+.+.+|+..+|+.+++++   .....||.+.   ..++++
T Consensus       112 ~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a-~~ll~~lGi~~~f~~i~~~d---~~~~~Kp~~~---~~l~~~  184 (237)
T TIGR01672       112 FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVS-KTLAKNFHIPAMNPVIFAGD---KPGQYQYTKT---QWIQDK  184 (237)
T ss_pred             CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHH-HHHHHHhCCchheeEEECCC---CCCCCCCCHH---HHHHhC
Confidence            3567888999999999999999999998    33333 55666789999999999988   6666788765   355677


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                      +  +    ++||||+.+|+.+|+++|+.++.|.|+..+
T Consensus       185 ~--i----~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s  216 (237)
T TIGR01672       185 N--I----RIHYGDSDNDITAAKEAGARGIRILRASNS  216 (237)
T ss_pred             C--C----eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence            7  5    799999999999999999999999988643

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>KOG3109|consensus

Probab=99.63  E-value=5.1e-15  Score=105.83  Aligned_cols=107  Identities=19%  Similarity=0.141  Sum_probs=93.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC---CccCCCCChHHHHHHHHHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP---EVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~---~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ...|.+-.+.+|-.|++.+  .+++||+.+.++.+.+ +.+|+.++|+.+++++...   ....+||.+.+|+++++..|
T Consensus        98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~ag  174 (244)
T KOG3109|consen   98 DLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG  174 (244)
T ss_pred             hcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence            4788899999999999864  8999999999886655 5579999999999997443   34569999999999999999


Q ss_pred             CCCC-CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         100 EKPQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       100 ~~~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                        ++ |.+++|++||.++|++|++.|+.++++....
T Consensus       175 --i~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~  208 (244)
T KOG3109|consen  175 --IDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH  208 (244)
T ss_pred             --CCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence              65 9999999999999999999999999997764

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=99.61  E-value=6.7e-15  Score=101.17  Aligned_cols=95  Identities=17%  Similarity=0.251  Sum_probs=81.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ....-|.+.++++.++++|.++.|+||+....+... .+.+|+    +++..+        .||.+..+++++++++  +
T Consensus        44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~-~~~l~v----~fi~~A--------~KP~~~~fr~Al~~m~--l  108 (175)
T COG2179          44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARA-AEKLGV----PFIYRA--------KKPFGRAFRRALKEMN--L  108 (175)
T ss_pred             CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhh-hhhcCC----ceeecc--------cCccHHHHHHHHHHcC--C
Confidence            356789999999999999999999999998877444 454565    334333        5999999999999999  9


Q ss_pred             CCCceEEEecCH-hHHHHHHHcCCeEEEecC
Q psy6288         103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPD  132 (166)
Q Consensus       103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~  132 (166)
                      ++++|+||||.+ +|+.+|..+|+.+|+|..
T Consensus       109 ~~~~vvmVGDqL~TDVlggnr~G~~tIlV~P  139 (175)
T COG2179         109 PPEEVVMVGDQLFTDVLGGNRAGMRTILVEP  139 (175)
T ss_pred             ChhHEEEEcchhhhhhhcccccCcEEEEEEE
Confidence            999999999999 999999999999999964

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.61  E-value=1.2e-15  Score=105.60  Aligned_cols=96  Identities=9%  Similarity=0.025  Sum_probs=83.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++||+.++|++|+ .+++++|+|++....+...+ +++++.. +|+.+++++   ++...||.   |.+++++++  .
T Consensus        44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~---d~~~~KP~---~~k~l~~l~--~  113 (148)
T smart00577       44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRD---ECVFVKGK---YVKDLSLLG--R  113 (148)
T ss_pred             EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECc---cccccCCe---EeecHHHcC--C
Confidence            467999999999999 47999999999988876554 5568854 569999999   88888987   999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                      ++++|++|||+..|+.+|.++|+..--
T Consensus       114 ~p~~~i~i~Ds~~~~~aa~~ngI~i~~  140 (148)
T smart00577      114 DLSNVIIIDDSPDSWPFHPENLIPIKP  140 (148)
T ss_pred             ChhcEEEEECCHHHhhcCccCEEEecC
Confidence            999999999999999999999887543

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=99.61  E-value=7.9e-15  Score=109.75  Aligned_cols=71  Identities=21%  Similarity=0.293  Sum_probs=61.4

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEF  153 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l  153 (166)
                      ...+||+|.+|+.++++++  +++++++||||++ +|+.+|+++|+.+++|.+|....+.    ...|+++++++.++
T Consensus       174 ~~~gKP~~~~~~~~~~~~~--~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~  249 (249)
T TIGR01457       174 VYIGKPNAIIMEKAVEHLG--TEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW  249 (249)
T ss_pred             cccCCChHHHHHHHHHHcC--CCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence            4457999999999999999  9999999999997 8999999999999999999765441    14688899888764

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.59  E-value=3.9e-15  Score=109.35  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=94.2

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc--cc--ceEEecCCCCCccCCCCChHH-------
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK--LF--HHVVLGSADPEVKQGKPAPDV-------   90 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~--~f--d~v~~~~~~~~~~~~Kp~~~~-------   90 (166)
                      ....++||+.++|+.|+++|++++|+|++....+...+ +.+ +..  .+  +..++++   .....||.|..       
T Consensus        71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~---~~~~~kp~p~~~~~~~~~  145 (219)
T PRK09552         71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGE---YITITWPHPCDEHCQNHC  145 (219)
T ss_pred             hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCC---eeEEeccCCccccccccC
Confidence            45789999999999999999999999999977665444 444 432  22  3334444   56667777653       


Q ss_pred             ---HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc--ccccccchhhCChhhhhhhhcC
Q psy6288          91 ---FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK--HRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        91 ---~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                         ...++++++  .++++|+||||+.+|+.+|+++|+..+   .+....  .....+.+.+++|.|+.+.|.+
T Consensus       146 ~~~K~~~l~~~~--~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei~~~l~~  214 (219)
T PRK09552        146 GCCKPSLIRKLS--DTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDVQTELKH  214 (219)
T ss_pred             CCchHHHHHHhc--cCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence               357889999  889999999999999999999999443   221111  1334567788999999888754

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.58  E-value=7e-15  Score=99.40  Aligned_cols=90  Identities=13%  Similarity=0.155  Sum_probs=75.6

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcC-------cccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKD-------TLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK   96 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~g-------l~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~   96 (166)
                      .++||+.++|+.|+++|++++|+||+ ..... ..+.++++       +..+|+.+++++       .+|+|..+..+++
T Consensus        29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~-~~~l~~~~~~~~i~~l~~~f~~~~~~~-------~~pkp~~~~~a~~  100 (128)
T TIGR01681        29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVA-YELLKIFEDFGIIFPLAEYFDPLTIGY-------WLPKSPRLVEIAL  100 (128)
T ss_pred             HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHH-HHHHHhccccccchhhHhhhhhhhhcC-------CCcHHHHHHHHHH
Confidence            47999999999999999999999999 55444 45555567       789999888876       2588999999999


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHH
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKA  122 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~  122 (166)
                      ++|..+.|++|+||||+..|+...++
T Consensus       101 ~lg~~~~p~~~l~igDs~~n~~~~~~  126 (128)
T TIGR01681       101 KLNGVLKPKSILFVDDRPDNNEEVDY  126 (128)
T ss_pred             HhcCCCCcceEEEECCCHhHHHHHHh
Confidence            99833589999999999999888765

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>PRK10444 UMP phosphatase; Provisional

Probab=99.58  E-value=2e-14  Score=107.46  Aligned_cols=70  Identities=16%  Similarity=0.292  Sum_probs=62.7

Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhh
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEF  153 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l  153 (166)
                      ..+||++.+++.++++++  +++++|+||||+. +|+.+|+++|+.+++|.+|....+.    ...|+++++++.++
T Consensus       171 ~~gKP~~~~~~~~~~~~~--~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el  245 (248)
T PRK10444        171 YVGKPSPWIIRAALNKMQ--AHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI  245 (248)
T ss_pred             ccCCCCHHHHHHHHHHcC--CCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence            347999999999999999  9999999999998 8999999999999999999776542    25789999999887

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.58  E-value=6.1e-14  Score=103.74  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=81.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCc--ccccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDT--LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl--~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ...++||+.++|+.|+++|++++++||..   .......+.+.+|+  .++|+.+++++   ..  .||.+..   .+++
T Consensus       112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd---~~--~K~~K~~---~l~~  183 (237)
T PRK11009        112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGD---KP--GQYTKTQ---WLKK  183 (237)
T ss_pred             cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCC---CC--CCCCHHH---HHHh
Confidence            47789999999999999999999999964   23344555666799  88998888877   42  5776653   5567


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTV  135 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~  135 (166)
                      ++  +    ++||||+..|+.+|+++|+.++.+.||..
T Consensus       184 ~~--i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~  215 (237)
T PRK11009        184 KN--I----RIFYGDSDNDITAAREAGARGIRILRAAN  215 (237)
T ss_pred             cC--C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence            77  5    99999999999999999999999999864

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.57  E-value=3.5e-14  Score=109.61  Aligned_cols=130  Identities=15%  Similarity=0.098  Sum_probs=94.9

Q ss_pred             hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc-------eEEecCCCCCccCCCCChHHHH
Q psy6288          20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-------HVVLGSADPEVKQGKPAPDVFL   92 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-------~v~~~~~~~~~~~~Kp~~~~~~   92 (166)
                      .....+++||+.++|+.|++.|++++|+|++...... .+.+.+|+...+.       ..+++...+....+||+++.++
T Consensus       176 v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~-~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~  254 (322)
T PRK11133        176 VRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFAD-YLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLT  254 (322)
T ss_pred             HHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHH-HHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHH
Confidence            3445789999999999999999999999999866553 4455578765443       2222221112334689999999


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhh
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPE  156 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~  156 (166)
                      .+++++|  +++++|++|||+.+|+.+++.+|+..++-.    .+.....++.+++  ++..+.-+
T Consensus       255 ~la~~lg--i~~~qtIaVGDg~NDl~m~~~AGlgiA~nA----kp~Vk~~Ad~~i~~~~l~~~l~~  314 (322)
T PRK11133        255 RLAQEYE--IPLAQTVAIGDGANDLPMIKAAGLGIAYHA----KPKVNEQAQVTIRHADLMGVLCI  314 (322)
T ss_pred             HHHHHcC--CChhhEEEEECCHHHHHHHHHCCCeEEeCC----CHHHHhhCCEEecCcCHHHHHHH
Confidence            9999999  999999999999999999999999887622    2234456666654  44444433

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.57  E-value=2.5e-14  Score=103.76  Aligned_cols=134  Identities=14%  Similarity=0.106  Sum_probs=94.7

Q ss_pred             hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCC-ccCCCCChHHHHHHHH
Q psy6288          18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE-VKQGKPAPDVFLVAAK   96 (166)
Q Consensus        18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~-~~~~Kp~~~~~~~~~~   96 (166)
                      ...+....++||+.++|+.|+++ ++++|+|++....+...+ +.+|+..+|+..+....+.. .+..++.|.....+++
T Consensus        61 ~~~~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~  138 (205)
T PRK13582         61 QEVIATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVK  138 (205)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHH
Confidence            34445678999999999999999 999999999988775554 55799888876554431100 1122334445566777


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccch-hhCChhhhhhhhc
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADL-VLNSLEEFKPELY  158 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~-~~~~~~~l~~~l~  158 (166)
                      +++  ..+++|+||||+.+|+.+++.+|+... +..  ........++. +++++.++..++.
T Consensus       139 ~~~--~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~--~~~~~~~~~~~~~~~~~~el~~~l~  196 (205)
T PRK13582        139 ALK--SLGYRVIAAGDSYNDTTMLGEADAGIL-FRP--PANVIAEFPQFPAVHTYDELLAAID  196 (205)
T ss_pred             HHH--HhCCeEEEEeCCHHHHHHHHhCCCCEE-ECC--CHHHHHhCCcccccCCHHHHHHHHH
Confidence            777  678999999999999999999998543 322  11222234454 8999999987764

>PLN02645 phosphoglycolate phosphatase

Probab=99.56  E-value=5.1e-15  Score=114.13  Aligned_cols=128  Identities=12%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288          29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL  108 (166)
Q Consensus        29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i  108 (166)
                      .+......|+.++-.++|+||.+............|...+|+.+.++........+||+|.+|..++++++  +++++++
T Consensus       174 ~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~--~~~~~~~  251 (311)
T PLN02645        174 KIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFG--IEKSQIC  251 (311)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcC--CCcccEE
Confidence            33445556655444788999988542111222335777788877776622223347999999999999999  9999999


Q ss_pred             EEecCH-hHHHHHHHcCCeEEEecCCCCCccc------ccccchhhCChhhhhhhhc
Q psy6288         109 VFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR------TEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       109 ~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~------~~~~~~~~~~~~~l~~~l~  158 (166)
                      ||||++ +|+.+|+++|+++++|.+|....+.      ...|+++++++.++.+++.
T Consensus       252 ~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~  308 (311)
T PLN02645        252 MVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA  308 (311)
T ss_pred             EEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence            999998 9999999999999999999765442      1468999999999988654

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.50  E-value=6.1e-14  Score=97.70  Aligned_cols=100  Identities=20%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      +|++|+++|++++|+||.....+... .+.+|+..+|+    +        .+|++..+..++++++  +++++|+||||
T Consensus        36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~-l~~~gi~~~~~----~--------~~~k~~~~~~~~~~~~--~~~~~~~~vGD  100 (154)
T TIGR01670        36 GIRCALKSGIEVAIITGRKAKLVEDR-CKTLGITHLYQ----G--------QSNKLIAFSDILEKLA--LAPENVAYIGD  100 (154)
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHH-HHHcCCCEEEe----c--------ccchHHHHHHHHHHcC--CCHHHEEEECC
Confidence            89999999999999999998877544 45578887763    1        2678999999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL  150 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~  150 (166)
                      +.+|+.+++++|+. +++.+...  .....+++++.+-
T Consensus       101 s~~D~~~~~~ag~~-~~v~~~~~--~~~~~a~~i~~~~  135 (154)
T TIGR01670       101 DLIDWPVMEKVGLS-VAVADAHP--LLIPRADYVTRIA  135 (154)
T ss_pred             CHHHHHHHHHCCCe-EecCCcCH--HHHHhCCEEecCC
Confidence            99999999999997 77766532  2344456655543

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>KOG2882|consensus

Probab=99.49  E-value=1.6e-13  Score=102.70  Aligned_cols=76  Identities=22%  Similarity=0.338  Sum_probs=66.7

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc--------cccccchhhCChh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH--------RTEAADLVLNSLE  151 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~--------~~~~~~~~~~~~~  151 (166)
                      ...+||.+.++..++++++  ++|++|+||||+. +||..++++|+++++|.+|.+..+        ....||++++++.
T Consensus       220 ~v~GKP~~~m~~~l~~~~~--i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~  297 (306)
T KOG2882|consen  220 IVLGKPSTFMFEYLLEKFN--IDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLG  297 (306)
T ss_pred             eecCCCCHHHHHHHHHHcC--CCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHH
Confidence            4569999999999999999  9999999999999 999999999999999999987543        2345899999999


Q ss_pred             hhhhhhc
Q psy6288         152 EFKPELY  158 (166)
Q Consensus       152 ~l~~~l~  158 (166)
                      ++.+.+.
T Consensus       298 d~~~~~~  304 (306)
T KOG2882|consen  298 DLLPLLN  304 (306)
T ss_pred             HHhhhcc
Confidence            8887653

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.47  E-value=1.1e-13  Score=103.19  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=80.2

Q ss_pred             chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE--EecCCCCCccCCCCChHHHHHHHHHcCCCCC-
Q psy6288          27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV--VLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ-  103 (166)
Q Consensus        27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~-  103 (166)
                      ++++.++++.|+++|+++ |+||.+..... ......+...+|..+  .+.+   ....+||++.+|+.++++++  .. 
T Consensus       140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~-~~~~~~~~g~~~~~i~~~g~~---~~~~gKP~~~~~~~~~~~~~--~~~  212 (242)
T TIGR01459       140 LDEFDELFAPIVARKIPN-ICANPDRGINQ-HGIYRYGAGYYAELIKQLGGK---VIYSGKPYPAIFHKALKECS--NIP  212 (242)
T ss_pred             HHHHHHHHHHHHhCCCcE-EEECCCEeccC-CCceEecccHHHHHHHHhCCc---EecCCCCCHHHHHHHHHHcC--CCC
Confidence            799999999998889997 88998765442 233445666666654  4555   55689999999999999998  54 


Q ss_pred             CCceEEEecCH-hHHHHHHHcCCeEEEecC
Q psy6288         104 PSKCLVFEDAP-NGVLGAKAAGMSCVMVPD  132 (166)
Q Consensus       104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~  132 (166)
                      +++|+||||++ +|+.+|+++|+.+++|.+
T Consensus       213 ~~~~~~vGD~~~~Di~~a~~~G~~~i~v~t  242 (242)
T TIGR01459       213 KNRMLMVGDSFYTDILGANRLGIDTALVLT  242 (242)
T ss_pred             cccEEEECCCcHHHHHHHHHCCCeEEEEeC
Confidence            67999999995 999999999999999853

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=99.46  E-value=2.5e-13  Score=99.46  Aligned_cols=128  Identities=11%  Similarity=0.088  Sum_probs=92.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc---ceEEecCCCCCccCCCCChHHH--------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF---HHVVLGSADPEVKQGKPAPDVF--------   91 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f---d~v~~~~~~~~~~~~Kp~~~~~--------   91 (166)
                      ...++||+.++|+.|+++|++++|+|++....+...+ +.++...++   +.++.++   .....+|++..+        
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~---~~~~~~p~~~~~~~~~~cg~  143 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNE---YIHIDWPHPCDGTCQNQCGC  143 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCC---eeEEeCCCCCccccccCCCC
Confidence            4789999999999999999999999999877665444 333333333   2344444   556677877654        


Q ss_pred             --HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc--ccccccchhhCChhhhhhhhcC
Q psy6288          92 --LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK--HRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        92 --~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                        ..++++++  ..+++++||||+.+|+.+|+.+|+  +++ ++....  +....+...+++|.|+.+.|.+
T Consensus       144 ~K~~~l~~~~--~~~~~~i~iGDg~~D~~~a~~Ad~--~~a-r~~l~~~~~~~~~~~~~~~~f~di~~~l~~  210 (214)
T TIGR03333       144 CKPSLIRKLS--EPNDYHIVIGDSVTDVEAAKQSDL--CFA-RDYLLNECEELGLNHAPFQDFYDVRKELEN  210 (214)
T ss_pred             CHHHHHHHHh--hcCCcEEEEeCCHHHHHHHHhCCe--eEe-hHHHHHHHHHcCCCccCcCCHHHHHHHHHH
Confidence              47788888  788999999999999999999998  333 222111  1223456678999999888753

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=99.45  E-value=4.4e-13  Score=97.42  Aligned_cols=91  Identities=26%  Similarity=0.414  Sum_probs=76.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+++|++.++|+.|++.|++++++|+.....+. .+.+.+|+   ++.++.+.   ..  +||.+.++..++++++  .
T Consensus       125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~-~~~~~lgi---~~~~v~a~---~~--~kP~~k~~~~~i~~l~--~  193 (215)
T PF00702_consen  125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTAS-AIAKQLGI---FDSIVFAR---VI--GKPEPKIFLRIIKELQ--V  193 (215)
T ss_dssp             EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH-HHHHHTTS---CSEEEEES---HE--TTTHHHHHHHHHHHHT--C
T ss_pred             cCcchhhhhhhhhhhhccCcceeeeecccccccc-cccccccc---cccccccc---cc--ccccchhHHHHHHHHh--c
Confidence            3578999999999999999999999999877664 44455788   33434444   12  6999999999999999  8


Q ss_pred             CCCceEEEecCHhHHHHHHHcC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAG  124 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G  124 (166)
                      ++++|+||||+.+|+.+++++|
T Consensus       194 ~~~~v~~vGDg~nD~~al~~Ag  215 (215)
T PF00702_consen  194 KPGEVAMVGDGVNDAPALKAAG  215 (215)
T ss_dssp             TGGGEEEEESSGGHHHHHHHSS
T ss_pred             CCCEEEEEccCHHHHHHHHhCc
Confidence            9999999999999999999987

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.44  E-value=8.7e-13  Score=94.15  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=76.9

Q ss_pred             hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-----------------C
Q psy6288          18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-----------------E   80 (166)
Q Consensus        18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-----------------~   80 (166)
                      .......+++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++..-                 .
T Consensus        65 ~~~~~~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~  143 (188)
T TIGR01489        65 LEVLKSAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCS  143 (188)
T ss_pred             HHHHHhCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCc
Confidence            334445789999999999999999999999999988775554 5579999999998764100                 0


Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      ...+.+++..++.+++++     +++++||||+.+|+.+|+++++.
T Consensus       144 ~~~g~~K~~~~~~~~~~~-----~~~~i~iGD~~~D~~aa~~~d~~  184 (188)
T TIGR01489       144 CPCGCCKGKVIHKLSEPK-----YQHIIYIGDGVTDVCPAKLSDVV  184 (188)
T ss_pred             CCCCCCHHHHHHHHHhhc-----CceEEEECCCcchhchHhcCCcc
Confidence            112233455666554432     78999999999999999998754

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.43  E-value=7.4e-13  Score=93.39  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      .++.|++.|++++|+||+....+...+ +.+|+..+|+.            .||+|..++.++++++  +++++|++|||
T Consensus        42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~------------~kpkp~~~~~~~~~l~--~~~~ev~~iGD  106 (169)
T TIGR02726        42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEG------------IKKKTEPYAQMLEEMN--ISDAEVCYVGD  106 (169)
T ss_pred             HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEec------------CCCCHHHHHHHHHHcC--cCHHHEEEECC
Confidence            689999999999999999988776555 55799888842            2788999999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC------ChhhhhhhhcCCC
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN------SLEEFKPELYGLP  161 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~  161 (166)
                      +.+|+.+++.+|+..+.-...   ......++++..      -+.++.+.+++..
T Consensus       107 ~~nDi~~~~~ag~~~am~nA~---~~lk~~A~~I~~~~~~~g~v~e~~e~il~~~  158 (169)
T TIGR02726       107 DLVDLSMMKRVGLAVAVGDAV---ADVKEAAAYVTTARGGHGAVREVAELILKAQ  158 (169)
T ss_pred             CHHHHHHHHHCCCeEECcCch---HHHHHhCCEEcCCCCCCCHHHHHHHHHHHhc
Confidence            999999999999886655322   223334444443      1456666666443

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.42  E-value=6.4e-13  Score=95.11  Aligned_cols=109  Identities=19%  Similarity=0.134  Sum_probs=84.9

Q ss_pred             HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEe
Q psy6288          32 RLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFE  111 (166)
Q Consensus        32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IG  111 (166)
                      ..++.|++.|++++|+||.....+...+ +.+|+..+|+    +        .++++..+..++++++  +++++|+|||
T Consensus        55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~----g--------~~~k~~~l~~~~~~~g--l~~~ev~~VG  119 (183)
T PRK09484         55 YGIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ----G--------QSNKLIAFSDLLEKLA--IAPEQVAYIG  119 (183)
T ss_pred             HHHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec----C--------CCcHHHHHHHHHHHhC--CCHHHEEEEC
Confidence            4788999999999999999987775444 5578877763    2        2456899999999999  9999999999


Q ss_pred             cCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC------Chhhhhhhhc
Q psy6288         112 DAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN------SLEEFKPELY  158 (166)
Q Consensus       112 D~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~------~~~~l~~~l~  158 (166)
                      |+.+|+.+++++|+.. .+...  .......+++++.      .+.++.++++
T Consensus       120 Ds~~D~~~a~~aG~~~-~v~~~--~~~~~~~a~~v~~~~~g~g~~~el~~~i~  169 (183)
T PRK09484        120 DDLIDWPVMEKVGLSV-AVADA--HPLLLPRADYVTRIAGGRGAVREVCDLLL  169 (183)
T ss_pred             CCHHHHHHHHHCCCeE-ecCCh--hHHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999984 45322  1223456677775      5778777765

>KOG3040|consensus

Probab=99.40  E-value=1.4e-12  Score=92.83  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=68.0

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc--c--cccccchhhCChhhhhh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK--H--RTEAADLVLNSLEEFKP  155 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~--~--~~~~~~~~~~~~~~l~~  155 (166)
                      ...+||.+.+|+.+++.+|  ++|++++||||.. .|+-+|+++||..|.|-+|....  +  ....|+.++++|.+...
T Consensus       177 ~vvGKP~~~fFe~al~~~g--v~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd  254 (262)
T KOG3040|consen  177 TVVGKPSPFFFESALQALG--VDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVD  254 (262)
T ss_pred             EEecCCCHHHHHHHHHhcC--CChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHH
Confidence            4559999999999999999  9999999999988 99999999999999999986433  2  45678899999999999


Q ss_pred             hhcC
Q psy6288         156 ELYG  159 (166)
Q Consensus       156 ~l~~  159 (166)
                      +|++
T Consensus       255 ~I~q  258 (262)
T KOG3040|consen  255 LIIQ  258 (262)
T ss_pred             HHHh
Confidence            8874

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=99.40  E-value=5.5e-12  Score=88.00  Aligned_cols=122  Identities=18%  Similarity=0.173  Sum_probs=95.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh--hcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR--HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~--~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ..++||++.++|+++++.|++++|.|+++.......+..  +..+..+|+..+...     ...|.....|.+++...| 
T Consensus       101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt-----iG~KrE~~SY~kIa~~iG-  174 (229)
T COG4229         101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT-----IGKKRESQSYAKIAGDIG-  174 (229)
T ss_pred             ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc-----ccccccchhHHHHHHhcC-
Confidence            468999999999999999999999999997754322221  224555665554433     335777899999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE  151 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~  151 (166)
                       ++|.+++|+.|.+..+.+|+.+|+.++++.++...+.-......+++||.
T Consensus       175 -l~p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~  224 (229)
T COG4229         175 -LPPAEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE  224 (229)
T ss_pred             -CCchheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence             99999999999999999999999999999988755554444455666665

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.40  E-value=7.5e-12  Score=90.56  Aligned_cols=104  Identities=12%  Similarity=0.012  Sum_probs=81.3

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEe--------cCCCCCccCCCCChHHHHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVL--------GSADPEVKQGKPAPDVFLVAA   95 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~--------~~~~~~~~~~Kp~~~~~~~~~   95 (166)
                      ..++||+.++|+.++++|++++|+|++....+.. +.+.+|+..+|...+.        +...+....++++...++..+
T Consensus        86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~-~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~  164 (202)
T TIGR01490        86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKP-LARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL  164 (202)
T ss_pred             HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHH-HHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence            4689999999999999999999999999776654 4566798887755222        110001123456677789999


Q ss_pred             HHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          96 KRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        96 ~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      ++++  +++++|+++||+.+|+.+++.+|.+.+..
T Consensus       165 ~~~~--~~~~~~~~~gDs~~D~~~~~~a~~~~~v~  197 (202)
T TIGR01490       165 AEEQ--IDLKDSYAYGDSISDLPLLSLVGHPYVVN  197 (202)
T ss_pred             HHcC--CCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence            9999  89999999999999999999999887654

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=99.38  E-value=5.2e-12  Score=91.78  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=92.4

Q ss_pred             hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-C---CCccCCCCChHHHHH
Q psy6288          18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-D---PEVKQGKPAPDVFLV   93 (166)
Q Consensus        18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-~---~~~~~~Kp~~~~~~~   93 (166)
                      ...+...+++||+.++|+.+++.+ +++|+|++....+. .+.+.+|+..+|...+..+. .   +.....+|.+.....
T Consensus        61 ~~~~~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~-~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~  138 (203)
T TIGR02137        61 QEVIATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQ-PLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVI  138 (203)
T ss_pred             HHHHHhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHH-HHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHH
Confidence            444455789999999999999975 99999999987664 45566899888863222220 0   001134556665555


Q ss_pred             HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccc-hhhCChhhhhhhhc
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD-LVLNSLEEFKPELY  158 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~-~~~~~~~~l~~~l~  158 (166)
                      .+++.+  .   +|++|||+.+|+.+++.+|.+.++...+....   ..++ .++.++.++...+.
T Consensus       139 ~l~~~~--~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~---~~~~~~~~~~~~~~~~~~~  196 (203)
T TIGR02137       139 AFKSLY--Y---RVIAAGDSYNDTTMLSEAHAGILFHAPENVIR---EFPQFPAVHTYEDLKREFL  196 (203)
T ss_pred             HHHhhC--C---CEEEEeCCHHHHHHHHhCCCCEEecCCHHHHH---hCCCCCcccCHHHHHHHHH
Confidence            556665  3   79999999999999999999999887664222   2333 36778888877664

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01686 FkbH FkbH-like domain

Probab=99.38  E-value=3.4e-12  Score=98.87  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=80.3

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh----cCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH----KDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~----~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      .+++|+.++|+.|++.|+.++|+|++....+...+ +.    +++.++|+.+..+        .||++..+..++++++ 
T Consensus        31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~--------~~pk~~~i~~~~~~l~-  100 (320)
T TIGR01686        31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN--------WGPKSESLRKIAKKLN-  100 (320)
T ss_pred             ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe--------cCchHHHHHHHHHHhC-
Confidence            57899999999999999999999999988775555 44    5888889887554        3899999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                       +++++++||||++.|+.++++++..
T Consensus       101 -i~~~~~vfidD~~~d~~~~~~~lp~  125 (320)
T TIGR01686       101 -LGTDSFLFIDDNPAERANVKITLPV  125 (320)
T ss_pred             -CCcCcEEEECCCHHHHHHHHHHCCC
Confidence             9999999999999999999998764

The C-terminal portion of this domain is unique to this family (by BLAST).

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=99.37  E-value=1.4e-11  Score=92.75  Aligned_cols=97  Identities=20%  Similarity=0.228  Sum_probs=77.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE------EecCCCCCccCCCCCh--------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV------VLGSADPEVKQGKPAP--------   88 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v------~~~~~~~~~~~~Kp~~--------   88 (166)
                      ...+.||+.++++.|+++|++++|+|++....+...+.+ +|+...+..+      +..+   ....++|.|        
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~-lgl~~~~~~IvSN~L~f~~d---GvltG~~~P~i~~~~K~  194 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQ-AGVYHPNVKVVSNFMDFDED---GVLKGFKGPLIHTFNKN  194 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHH-cCCCCcCceEEeeeEEECCC---CeEeCCCCCcccccccH
Confidence            578999999999999999999999999998888666654 5887666666      4444   445557777        


Q ss_pred             -HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288          89 -DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus        89 -~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~  123 (166)
                       ..++...+.++...++++|++|||+.+|+.+|..+
T Consensus       195 ~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~  230 (277)
T TIGR01544       195 HDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV  230 (277)
T ss_pred             HHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence             66767778877336899999999999999998776

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.37  E-value=3.1e-12  Score=104.17  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchh------------hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKE------------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~------------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~   93 (166)
                      ++||+.+.|+.|++.|++++|+||....            .+ ..+.+.+|+  .|+.+++.+   ...++||.+.++..
T Consensus       198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki-~~iL~~lgi--pfdviia~~---~~~~RKP~pGm~~~  271 (526)
T TIGR01663       198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKI-EAIVAKLGV--PFQVFIAIG---AGFYRKPLTGMWDH  271 (526)
T ss_pred             cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHH-HHHHHHcCC--ceEEEEeCC---CCCCCCCCHHHHHH
Confidence            6899999999999999999999998752            23 334455676  388888777   77889999999999


Q ss_pred             HHHHcC--CCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288          94 AAKRFD--EKPQPSKCLVFEDAPNGVLGAKAAGM  125 (166)
Q Consensus        94 ~~~~~~--~~~~~~~~i~IGD~~~Di~~a~~~G~  125 (166)
                      ++++++  ..+++++++||||+..|+.+|+++|-
T Consensus       272 a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~  305 (526)
T TIGR01663       272 LKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK  305 (526)
T ss_pred             HHHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence            999984  12789999999999988877776664

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=99.36  E-value=1.1e-11  Score=96.07  Aligned_cols=108  Identities=13%  Similarity=0.065  Sum_probs=84.1

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC-------cccccceEEecCCCCC--------------cc
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD-------TLKLFHHVVLGSADPE--------------VK   82 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g-------l~~~fd~v~~~~~~~~--------------~~   82 (166)
                      ..+.||+.++|+.|+++|++++|+||+....+...+...+|       +.++||.|+++...|.              .+
T Consensus       183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g  262 (343)
T TIGR02244       183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETG  262 (343)
T ss_pred             hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCC
Confidence            45699999999999999999999999998877555544336       8999999988863321              00


Q ss_pred             CCCCCh------------HHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHH-HcCCeEEEecCC
Q psy6288          83 QGKPAP------------DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAK-AAGMSCVMVPDP  133 (166)
Q Consensus        83 ~~Kp~~------------~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~-~~G~~~i~v~~~  133 (166)
                      ..++..            .-+....+.++  +.+++++||||.+ +|+.+|+ .+||.+++|...
T Consensus       263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~--~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE  325 (343)
T TIGR02244       263 SLKWGEVDGLEPGKVYSGGSLKQFHELLK--WRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE  325 (343)
T ss_pred             cccCCccccccCCCeEeCCCHHHHHHHHC--CCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence            011111            22556788889  9999999999999 9999998 899999999764

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PTZ00445 p36-lilke protein; Provisional

Probab=99.28  E-value=5.2e-11  Score=85.59  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=79.3

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchhh--------------HHHHHhhhcCcccccceEEecCCC----C----CccC
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKES--------------FELKTSRHKDTLKLFHHVVLGSAD----P----EVKQ   83 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--------------~~~~l~~~~gl~~~fd~v~~~~~~----~----~~~~   83 (166)
                      +.|.+..+++.|++.|++++|||-++...              +....++.-+-+.-...+++..+.    +    ..+.
T Consensus        76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl  155 (219)
T PTZ00445         76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL  155 (219)
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence            67899999999999999999999877543              112222211111122334433211    0    2477


Q ss_pred             CCCChHH--H--HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          84 GKPAPDV--F--LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        84 ~Kp~~~~--~--~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      .||+|+.  |  +.+++++|  +.|++|+||+|+..++++|++.|+.++.+..+
T Consensus       156 ~KPdp~iK~yHle~ll~~~g--l~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~  207 (219)
T PTZ00445        156 DAPMPLDKSYHLKQVCSDFN--VNPDEILFIDDDMNNCKNALKEGYIALHVTGN  207 (219)
T ss_pred             cCCCccchHHHHHHHHHHcC--CCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence            8999999  8  99999999  99999999999999999999999999999754

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=99.26  E-value=4.3e-11  Score=84.71  Aligned_cols=99  Identities=17%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC---------CccCCCCChHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP---------EVKQGKPAPDVFL   92 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~---------~~~~~Kp~~~~~~   92 (166)
                      ....++||+.++++.++++|++++|+|++....+... .+.+|+..+|...+..+.++         .......+...+.
T Consensus        70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~-~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~  148 (177)
T TIGR01488        70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPV-AEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK  148 (177)
T ss_pred             hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHH-HHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence            4567899999999999999999999999997766544 45568887776554442110         0112333467888


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~  123 (166)
                      ..+++++  ++++++++|||+.+|+.+++.+
T Consensus       149 ~~~~~~~--~~~~~~~~iGDs~~D~~~~~~a  177 (177)
T TIGR01488       149 ELLEESK--ITLKKIIAVGDSVNDLPMLKLA  177 (177)
T ss_pred             HHHHHhC--CCHHHEEEEeCCHHHHHHHhcC
Confidence            8888999  8999999999999999998753

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.24  E-value=3.5e-11  Score=99.14  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=87.2

Q ss_pred             CCccchhHHHHHHHHHHCCC-CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNI-PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ...++||+.+.|++|++.|+ +++++||.....+. .+.+.+|+.++|..+.            |  +.-..++++++  
T Consensus       360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~-~i~~~lgi~~~f~~~~------------p--~~K~~~i~~l~--  422 (536)
T TIGR01512       360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAE-RVARELGIDEVHAELL------------P--EDKLEIVKELR--  422 (536)
T ss_pred             eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHH-HHHHHcCChhhhhccC------------c--HHHHHHHHHHH--
Confidence            46789999999999999999 99999999977664 4455579988773221            1  11245677777  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCC-CCcccccccchhh--CChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT-VPKHRTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~-~~~~~~~~~~~~~--~~~~~l~~~l  157 (166)
                      ...++++||||+.+|+.+++++|+   ++.++. ........+|.++  +++.++...+
T Consensus       423 ~~~~~v~~vGDg~nD~~al~~A~v---gia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i  478 (536)
T TIGR01512       423 EKYGPVAMVGDGINDAPALAAADV---GIAMGASGSDVAIETADVVLLNDDLSRLPQAI  478 (536)
T ss_pred             hcCCEEEEEeCCHHHHHHHHhCCE---EEEeCCCccHHHHHhCCEEEECCCHHHHHHHH
Confidence            667899999999999999999995   666663 2233445678877  8898887654

.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.23  E-value=2.5e-11  Score=100.37  Aligned_cols=115  Identities=19%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ...++||+.++|++|++.| ++++++||.....+... .+.+|+.++|..+.              |+.-..++++++  
T Consensus       382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i-~~~lgi~~~f~~~~--------------p~~K~~~v~~l~--  444 (556)
T TIGR01525       382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAV-AAELGIDEVHAELL--------------PEDKLAIVKELQ--  444 (556)
T ss_pred             cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHH-HHHhCCCeeeccCC--------------HHHHHHHHHHHH--
Confidence            4689999999999999999 99999999998877544 55579987774321              111234666666  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l  157 (166)
                      ..+++|+||||+.+|+.+++++|   +++.++.........+|+++.  ++..+...+
T Consensus       445 ~~~~~v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i  499 (556)
T TIGR01525       445 EEGGVVAMVGDGINDAPALAAAD---VGIAMGAGSDVAIEAADIVLLNDDLSSLPTAI  499 (556)
T ss_pred             HcCCEEEEEECChhHHHHHhhCC---EeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence            56789999999999999999999   566666333334456777766  676666554

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=99.23  E-value=1.1e-10  Score=82.05  Aligned_cols=107  Identities=14%  Similarity=0.227  Sum_probs=76.5

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc----------cccceEEecCCCCCccCCCCChHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL----------KLFHHVVLGSADPEVKQGKPAPDVF   91 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~----------~~fd~v~~~~~~~~~~~~Kp~~~~~   91 (166)
                      ....+||++.+.|+.|+++|+++++.|....+.....+++.+++.          ++|+..-.+.        -.+...+
T Consensus        42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~--------gsK~~Hf  113 (169)
T PF12689_consen   42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP--------GSKTTHF  113 (169)
T ss_dssp             -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS--------S-HHHHH
T ss_pred             CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec--------CchHHHH
Confidence            457899999999999999999999999776566667777878999          8888865555        2458999


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH  138 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~  138 (166)
                      +.+.++.|  ++.++++|+.|..+++...++.|+.++.|..|.+...
T Consensus       114 ~~i~~~tg--I~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~  158 (169)
T PF12689_consen  114 RRIHRKTG--IPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDE  158 (169)
T ss_dssp             HHHHHHH-----GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHH
T ss_pred             HHHHHhcC--CChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHH
Confidence            99999999  9999999999999999999999999999999865433

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.22  E-value=1.2e-11  Score=92.25  Aligned_cols=112  Identities=19%  Similarity=0.293  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHH-HHhhhcCccc-ccceEEecCCCCC
Q psy6288           4 SQVLNYVTHVIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKESFEL-KTSRHKDTLK-LFHHVVLGSADPE   80 (166)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~-~l~~~~gl~~-~fd~v~~~~~~~~   80 (166)
                      ++++..++.++.|.++.+. ...++||+.++|++|+++|++++++||+++..... ..++.+|+.. +|+.++++.   .
T Consensus         2 ~~~~~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~---~   78 (242)
T TIGR01459         2 FDLINDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG---E   78 (242)
T ss_pred             hhhhhcCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH---H
Confidence            4555566666777777554 46789999999999999999999999998765431 3345579987 999999987   3


Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM  125 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~  125 (166)
                      ...     ..+..++++++  .+++++++|||+..|+.....+|.
T Consensus        79 ~~~-----~~l~~~~~~~~--~~~~~~~~vGd~~~d~~~~~~~~~  116 (242)
T TIGR01459        79 IAV-----QMILESKKRFD--IRNGIIYLLGHLENDIINLMQCYT  116 (242)
T ss_pred             HHH-----HHHHhhhhhcc--CCCceEEEeCCcccchhhhcCCCc
Confidence            332     46777778888  889999999999988887766554

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=99.17  E-value=1.7e-11  Score=86.09  Aligned_cols=98  Identities=9%  Similarity=0.005  Sum_probs=83.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...+||+.++|+.|.+. +.++|.|++....+.. +.++++... +|+.+++.+   ++...+|.   +.+.++.++  .
T Consensus        41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~-il~~ldp~~~~f~~~l~r~---~~~~~~~~---~~K~L~~l~--~  110 (162)
T TIGR02251        41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADP-VLDILDRGGKVISRRLYRE---SCVFTNGK---YVKDLSLVG--K  110 (162)
T ss_pred             EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHH-HHHHHCcCCCEEeEEEEcc---ccEEeCCC---EEeEchhcC--C
Confidence            46799999999999987 9999999999887754 556678765 889999888   77666665   678888899  8


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      +++++++|||++.++.++.++|+......
T Consensus       111 ~~~~vIiVDD~~~~~~~~~~NgI~i~~f~  139 (162)
T TIGR02251       111 DLSKVIIIDNSPYSYSLQPDNAIPIKSWF  139 (162)
T ss_pred             ChhhEEEEeCChhhhccCccCEeecCCCC
Confidence            99999999999999999999999877665

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=99.12  E-value=4.1e-10  Score=78.79  Aligned_cols=99  Identities=17%  Similarity=0.217  Sum_probs=67.4

Q ss_pred             Cccc-hhHHHHHHHHHHCCCCEEEEeCCchh----------hHHHH---HhhhcCcccccceEEecCCCCCccCCCCChH
Q psy6288          24 YNLA-IGALRLINHLHKHNIPFAIATSSAKE----------SFELK---TSRHKDTLKLFHHVVLGSADPEVKQGKPAPD   89 (166)
Q Consensus        24 ~~~~-~g~~~~l~~l~~~g~~i~ivS~~~~~----------~~~~~---l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~   89 (166)
                      +.++ |++.+.|++|.+.||+++|+||..--          ....+   +.+.+++.  +....+..   ...++||.+.
T Consensus        27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~---~d~~RKP~~G  101 (159)
T PF08645_consen   27 WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPH---KDPCRKPNPG  101 (159)
T ss_dssp             GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGC---SSTTSTTSSH
T ss_pred             hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCC---CCCCCCCchh
Confidence            4544 58999999999999999999988311          11111   22223332  33334444   4589999999


Q ss_pred             HHHHHHHHcCC--CCCCCceEEEecC-----------HhHHHHHHHcCCeE
Q psy6288          90 VFLVAAKRFDE--KPQPSKCLVFEDA-----------PNGVLGAKAAGMSC  127 (166)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~~i~IGD~-----------~~Di~~a~~~G~~~  127 (166)
                      |++.++++++.  .++.++++||||.           .+|...|.++|++.
T Consensus       102 M~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f  152 (159)
T PF08645_consen  102 MWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF  152 (159)
T ss_dssp             HHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred             HHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence            99999999982  2489999999996           68999999999974

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>PRK08238 hypothetical protein; Validated

Probab=99.12  E-value=6.5e-10  Score=90.16  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=79.0

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      .+++||+.++|++++++|++++++|++....++ .+.+++|+   ||.+++++   .....||++.. +.+.+.++    
T Consensus        71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~-~i~~~lGl---Fd~Vigsd---~~~~~kg~~K~-~~l~~~l~----  138 (479)
T PRK08238         71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQ-AVAAHLGL---FDGVFASD---GTTNLKGAAKA-AALVEAFG----  138 (479)
T ss_pred             CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHcCC---CCEEEeCC---CccccCCchHH-HHHHHHhC----
Confidence            457899999999999999999999999987664 45566677   89999998   66677776543 34556666    


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      .++++++||+.+|+.+++.+| ..+.|+.+.
T Consensus       139 ~~~~~yvGDS~~Dlp~~~~A~-~av~Vn~~~  168 (479)
T PRK08238        139 ERGFDYAGNSAADLPVWAAAR-RAIVVGASP  168 (479)
T ss_pred             ccCeeEecCCHHHHHHHHhCC-CeEEECCCH
Confidence            466899999999999999999 777776653

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=99.09  E-value=1e-09  Score=80.25  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             hhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-------CCCccCCCCChHHH
Q psy6288          20 LLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-------DPEVKQGKPAPDVF   91 (166)
Q Consensus        20 ~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-------~~~~~~~Kp~~~~~   91 (166)
                      .... ..++||+.++++.+++.|++++|+|++....+ ..+.+.+|++..+...+..+.       -+....++-+...+
T Consensus        71 ~~~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv-~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l  149 (212)
T COG0560          71 VREEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLV-EPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKAL  149 (212)
T ss_pred             HHHhcCcCCccHHHHHHHHHHCCCEEEEEcCChHHHH-HHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHH
Confidence            3334 78999999999999999999999999996544 677787899887765555440       00011123357788


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +..++++|  +++++++++||+.+|+..-+.+|.+.+.-..+
T Consensus       150 ~~~~~~~g--~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~  189 (212)
T COG0560         150 RELAAELG--IPLEETVAYGDSANDLPMLEAAGLPIAVNPKP  189 (212)
T ss_pred             HHHHHHcC--CCHHHeEEEcCchhhHHHHHhCCCCeEeCcCH
Confidence            89999999  89999999999999999999999998877555

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=99.08  E-value=2.7e-10  Score=88.26  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             ccCCCCChHHHHHHHHHc--------CC---CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-c--ccccch
Q psy6288          81 VKQGKPAPDVFLVAAKRF--------DE---KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-R--TEAADL  145 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~--------~~---~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~--~~~~~~  145 (166)
                      ...+||++.+|+.+++.+        +.   ..++++++||||++ +||.+|+++|+.+++|.+|..... .  ...|++
T Consensus       229 ~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~  308 (321)
T TIGR01456       229 YTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTL  308 (321)
T ss_pred             EEcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCE
Confidence            456999999999988887        31   02457999999999 999999999999999999854433 2  245899


Q ss_pred             hhCChhhhhhhhc
Q psy6288         146 VLNSLEEFKPELY  158 (166)
Q Consensus       146 ~~~~~~~l~~~l~  158 (166)
                      +++++.++..+|+
T Consensus       309 vv~~l~e~~~~i~  321 (321)
T TIGR01456       309 IVNDVFDAVTKIL  321 (321)
T ss_pred             EECCHHHHHHHhC
Confidence            9999999988764

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=99.05  E-value=2.6e-09  Score=74.96  Aligned_cols=108  Identities=24%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             HHhhhhhhhc---CCccchhHHHHHHHHHHCCC--CEEEEeCCc-------hhhHHHHHhhhcCcccccceEEecCCCCC
Q psy6288          13 VIFDMDGLLL---GYNLAIGALRLINHLHKHNI--PFAIATSSA-------KESFELKTSRHKDTLKLFHHVVLGSADPE   80 (166)
Q Consensus        13 ~~~~~~~~~~---~~~~~~g~~~~l~~l~~~g~--~i~ivS~~~-------~~~~~~~l~~~~gl~~~fd~v~~~~~~~~   80 (166)
                      ++.|.+..+.   ...+.|...+++++|++.+.  ++.|+||+.       ...+ ..+.+.+|+.-    + .      
T Consensus        44 li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a-~~~~~~lgIpv----l-~------  111 (168)
T PF09419_consen   44 LIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERA-EALEKALGIPV----L-R------  111 (168)
T ss_pred             EEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHH-HHHHHhhCCcE----E-E------
Confidence            3444454433   45688999999999999866  499999984       2333 45566666421    1 1      


Q ss_pred             ccCCCCChHHHHHHHHHcCC---CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCC
Q psy6288          81 VKQGKPAPDVFLVAAKRFDE---KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~---~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ....||  ..++.+++.++.   ...|++++||||.+ +|+.+|...|+.+|++..|.
T Consensus       112 h~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv  167 (168)
T PF09419_consen  112 HRAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV  167 (168)
T ss_pred             eCCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence            123576  555666666651   03599999999999 99999999999999998874

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=99.04  E-value=1.4e-09  Score=90.23  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=81.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|++|++.|++++++|++....+. .+.+.+|++ +|    . +    .   +|  +.-..++++++  .
T Consensus       403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~-~ia~~lgi~-~~----~-~----~---~p--~~K~~~v~~l~--~  464 (562)
T TIGR01511       403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAK-AVAKELGIN-VR----A-E----V---LP--DDKAALIKELQ--E  464 (562)
T ss_pred             cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHH-HHHHHcCCc-EE----c-c----C---Ch--HHHHHHHHHHH--H
Confidence            4578999999999999999999999999987664 445557885 22    1 2    1   12  12244556666  5


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l  157 (166)
                      ++++|+||||+.+|+.+++++|+   ++.++.........+|+++  +++.++...+
T Consensus       465 ~~~~v~~VGDg~nD~~al~~A~v---gia~g~g~~~a~~~Advvl~~~~l~~l~~~i  518 (562)
T TIGR01511       465 KGRVVAMVGDGINDAPALAQADV---GIAIGAGTDVAIEAADVVLMRNDLNDVATAI  518 (562)
T ss_pred             cCCEEEEEeCCCccHHHHhhCCE---EEEeCCcCHHHHhhCCEEEeCCCHHHHHHHH
Confidence            67899999999999999999996   3444432333445677776  4777766554

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=99.04  E-value=2.7e-10  Score=84.67  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             HCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce-EEEecCH-hH
Q psy6288          39 KHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC-LVFEDAP-NG  116 (166)
Q Consensus        39 ~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~-i~IGD~~-~D  116 (166)
                      ++|-...++||.+.-.....-....+...+|+.+...........+||++.+|+.++++++  .+++++ +||||++ +|
T Consensus       142 ~~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~--~~~~~~~~~IGD~~~~D  219 (236)
T TIGR01460       142 AEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQ--ARPERRDVMVGDNLRTD  219 (236)
T ss_pred             hCCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhC--CCCccceEEECCCcHHH
Confidence            3453566778855211100001112444444433332211133578999999999999999  888887 9999999 89


Q ss_pred             HHHHHHcCCeEEEecCC
Q psy6288         117 VLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       117 i~~a~~~G~~~i~v~~~  133 (166)
                      +.+|+++|+.+++|.+|
T Consensus       220 i~~A~~~G~~~i~v~~G  236 (236)
T TIGR01460       220 ILGAKNAGFDTLLVLTG  236 (236)
T ss_pred             HHHHHHCCCcEEEEecC
Confidence            99999999999999875

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.02  E-value=1.4e-09  Score=94.42  Aligned_cols=125  Identities=15%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc----------------cCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV----------------KQGKPA   87 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----------------~~~Kp~   87 (166)
                      .+++||+.++++.|++.|++++++|+.....+. .+.+..|+...++.++++.   +.                -...+.
T Consensus       527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~-~ia~~~Gi~~~~~~~v~g~---~l~~~~~~~l~~~~~~~~Vfar~~  602 (884)
T TIGR01522       527 DPPRPGVKEAVTTLITGGVRIIMITGDSQETAV-SIARRLGMPSKTSQSVSGE---KLDAMDDQQLSQIVPKVAVFARAS  602 (884)
T ss_pred             CcchhHHHHHHHHHHHCCCeEEEECCCCHHHHH-HHHHHcCCCCCCCceeEhH---HhHhCCHHHHHHHhhcCeEEEECC
Confidence            488999999999999999999999999988774 4556679987776666664   32                223466


Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhh--CChhhhhhhh
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~--~~~~~l~~~l  157 (166)
                      |+--..+.+.++  ...+.+.|+||+.+|+.+.+++++   +++.|....+ ....+|+++  +++..+...+
T Consensus       603 P~~K~~iv~~lq--~~g~~v~mvGDGvND~pAl~~AdV---Gia~g~~g~~va~~aaDivl~dd~~~~i~~~i  670 (884)
T TIGR01522       603 PEHKMKIVKALQ--KRGDVVAMTGDGVNDAPALKLADI---GVAMGQTGTDVAKEAADMILTDDDFATILSAI  670 (884)
T ss_pred             HHHHHHHHHHHH--HCCCEEEEECCCcccHHHHHhCCe---eEecCCCcCHHHHHhcCEEEcCCCHHHHHHHH
Confidence            777788888888  677899999999999999999995   5555532222 446778887  6688887654

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=98.95  E-value=1.5e-08  Score=67.34  Aligned_cols=124  Identities=19%  Similarity=0.253  Sum_probs=99.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++|+.+.+.|+.|+.. +.++|.|+.....+.. +.+..|+.-  +.++.+.          ++.+-..+++.++  -
T Consensus        28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~-lae~~gi~~--~rv~a~a----------~~e~K~~ii~eLk--k   91 (152)
T COG4087          28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQ-LAEFVGIPV--ERVFAGA----------DPEMKAKIIRELK--K   91 (152)
T ss_pred             CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHH-HHHHcCCce--eeeeccc----------CHHHHHHHHHHhc--C
Confidence            368999999999999998 9999999998777744 445456532  3444443          3677789999999  6


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPP  162 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  162 (166)
                      ..+.|+||||+.+|+.+-+++-...+.+..+.........+|+++.+..++...+..+..
T Consensus        92 ~~~k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~~~  151 (152)
T COG4087          92 RYEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDTSE  151 (152)
T ss_pred             CCcEEEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcccc
Confidence            779999999999999999999888777776555555667889999999999998877653

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.90  E-value=1.2e-08  Score=88.32  Aligned_cols=116  Identities=17%  Similarity=0.129  Sum_probs=84.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+++||+.+.|++|++.|++++++|+.....+. .+.+.+|+.++|..    -        .  |+.-..++++++  .
T Consensus       648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~-~ia~~lgi~~~~~~----~--------~--p~~K~~~i~~l~--~  710 (834)
T PRK10671        648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTAN-AIAKEAGIDEVIAG----V--------L--PDGKAEAIKRLQ--S  710 (834)
T ss_pred             cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCCEEEeC----C--------C--HHHHHHHHHHHh--h
Confidence            4578999999999999999999999999977664 45566788765522    1        1  233456778888  7


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~  158 (166)
                      .+++++||||+.+|+.+++.+|+   ++.+|.....  .........+++..+...+.
T Consensus       711 ~~~~v~~vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i~~~i~  765 (834)
T PRK10671        711 QGRQVAMVGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGVADALA  765 (834)
T ss_pred             cCCEEEEEeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHHHHHH
Confidence            78999999999999999999999   3344432332  22334456677887776653

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=98.74  E-value=8e-08  Score=71.04  Aligned_cols=142  Identities=14%  Similarity=0.064  Sum_probs=94.1

Q ss_pred             hhhhhhhcCCccchhHHHHHHHH--HHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC----C---------
Q psy6288          15 FDMDGLLLGYNLAIGALRLINHL--HKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD----P---------   79 (166)
Q Consensus        15 ~~~~~~~~~~~~~~g~~~~l~~l--~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~----~---------   79 (166)
                      .++...+...++.||+.++++.+  ++.|+.++|+|.+..-.++.- +++.|+...|+.|++....    +         
T Consensus        61 ~~I~~~l~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~i-L~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~  139 (234)
T PF06888_consen   61 EDIRDALRSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETI-LEHHGLRDCFSEIFTNPACFDADGRLRVRPYHS  139 (234)
T ss_pred             HHHHHHHHcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHH-HHhCCCccccceEEeCCceecCCceEEEeCccC
Confidence            34455666799999999999999  457999999999986666544 5667999999888776200    0         


Q ss_pred             -CccCCCC---ChHHHHHHHHHc---CCCCCCCceEEEecCHhHHHHHHHcCCe-EEEecCCCCCcc------ccccc-c
Q psy6288          80 -EVKQGKP---APDVFLVAAKRF---DEKPQPSKCLVFEDAPNGVLGAKAAGMS-CVMVPDPTVPKH------RTEAA-D  144 (166)
Q Consensus        80 -~~~~~Kp---~~~~~~~~~~~~---~~~~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v~~~~~~~~------~~~~~-~  144 (166)
                       .+..+-|   +...++..++..   |  ...++++||||+.+|+..+.+.+-. .++.-.++.-..      ..-.+ -
T Consensus       140 h~C~~C~~NmCK~~il~~~~~~~~~~g--~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~~~~~~~~a~v  217 (234)
T PF06888_consen  140 HGCSLCPPNMCKGKILERLLQEQAQRG--VPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLIQKNPGEVKAEV  217 (234)
T ss_pred             CCCCcCCCccchHHHHHHHHHHHhhcC--CCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHHhcCCCcceeEE
Confidence             0111111   245566666663   5  6789999999999999999998775 445444442221      11122 2


Q ss_pred             hhhCChhhhhhhhcC
Q psy6288         145 LVLNSLEEFKPELYG  159 (166)
Q Consensus       145 ~~~~~~~~l~~~l~~  159 (166)
                      ...++=.|+...|++
T Consensus       218 ~~W~~g~~i~~~l~~  232 (234)
T PF06888_consen  218 VPWSSGEEILEILLQ  232 (234)
T ss_pred             EecCCHHHHHHHHHh
Confidence            345666666666554

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=98.74  E-value=1.9e-08  Score=68.86  Aligned_cols=83  Identities=19%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      -|+.|.+.|++++|+|+...+.++.+..+ +|+...|    -+-        +.+...|+.++++++  +++++|.||||
T Consensus        43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~-LGI~~~~----qG~--------~dK~~a~~~L~~~~~--l~~e~~ayiGD  107 (170)
T COG1778          43 GIKLLLKSGIKVAIITGRDSPIVEKRAKD-LGIKHLY----QGI--------SDKLAAFEELLKKLN--LDPEEVAYVGD  107 (170)
T ss_pred             HHHHHHHcCCeEEEEeCCCCHHHHHHHHH-cCCceee----ech--------HhHHHHHHHHHHHhC--CCHHHhhhhcC
Confidence            58899999999999999998888888766 6997655    111        334789999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEe
Q psy6288         113 APNGVLGAKAAGMSCVMV  130 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v  130 (166)
                      ..+|+....++|++...-
T Consensus       108 D~~Dlpvm~~vGls~a~~  125 (170)
T COG1778         108 DLVDLPVMEKVGLSVAVA  125 (170)
T ss_pred             ccccHHHHHHcCCccccc
Confidence            999999999999986644

>KOG1615|consensus

Probab=98.67  E-value=1.1e-07  Score=67.34  Aligned_cols=125  Identities=10%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc--ccceEEecCCCC---------CccCCCCChHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK--LFHHVVLGSADP---------EVKQGKPAPDVF   91 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~--~fd~v~~~~~~~---------~~~~~Kp~~~~~   91 (166)
                      ...+-||++++..+|++.|.+++++|++.+..+. .+...+|+..  .|...+--+.++         ....+.-+++.+
T Consensus        86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~-~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i  164 (227)
T KOG1615|consen   86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIE-PVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVI  164 (227)
T ss_pred             CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHH-HHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHH
Confidence            4678999999999999999999999999988774 4455568764  333221111000         111122346677


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhh
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKP  155 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~  155 (166)
                      ..+.+  +  .....++||||+.+|+++..-   .-+++..|.....  -...+.+.+++|..|..
T Consensus       165 ~~lrk--~--~~~~~~~mvGDGatDlea~~p---a~afi~~~g~~~r~~vk~nak~~~~~f~~L~~  223 (227)
T KOG1615|consen  165 ALLRK--N--YNYKTIVMVGDGATDLEAMPP---ADAFIGFGGNVIREGVKANAKWYVTDFYVLGG  223 (227)
T ss_pred             HHHHh--C--CChheeEEecCCccccccCCc---hhhhhccCCceEcHhhHhccHHHHHHHHHHcc
Confidence            77666  5  679999999999999998765   2233444433222  33456677777766543

>PLN02645 phosphoglycolate phosphatase

Probab=98.64  E-value=1.2e-07  Score=73.32  Aligned_cols=109  Identities=16%  Similarity=0.129  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCc
Q psy6288           6 VLNYVTHVIFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEV   81 (166)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~   81 (166)
                      ++..++.++.|+++.+.. ..++||+.++|++|+++|++++++||++...   ...++. .+|+...++.|+++.   . 
T Consensus        24 ~~~~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~-~lGi~~~~~~I~ts~---~-   98 (311)
T PLN02645         24 LIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFE-SLGLNVTEEEIFSSS---F-   98 (311)
T ss_pred             HHHhCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH-HCCCCCChhhEeehH---H-
Confidence            333344467778886663 5689999999999999999999999988333   334443 468887777777765   1 


Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                              .....+++.+  ....+.++++++..+...++++|+.++.
T Consensus        99 --------~~~~~l~~~~--~~~~~~V~viG~~~~~~~l~~~Gi~~~~  136 (311)
T PLN02645         99 --------AAAAYLKSIN--FPKDKKVYVIGEEGILEELELAGFQYLG  136 (311)
T ss_pred             --------HHHHHHHhhc--cCCCCEEEEEcCHHHHHHHHHCCCEEec
Confidence                    3445555555  4445568888899999999999998764

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=98.64  E-value=7.1e-08  Score=72.78  Aligned_cols=113  Identities=15%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             chhHHHHHHHHHHCCCCEEEEeCCch----hhHHHHHhhhcCccc---ccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          27 AIGALRLINHLHKHNIPFAIATSSAK----ESFELKTSRHKDTLK---LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        27 ~~g~~~~l~~l~~~g~~i~ivS~~~~----~~~~~~l~~~~gl~~---~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ++++.++++.++..+..+.++++...    ......+.+.+++..   .++.+   +   -....-.++.+++.+++.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---e---i~~~~~~K~~~l~~l~~~~g  212 (272)
T PRK10530        139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQV---D---IARKGNSKGKRLTQWVEAQG  212 (272)
T ss_pred             eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceE---E---EecCCCChHHHHHHHHHHcC
Confidence            56677777777777777777776542    112223333334331   11111   1   11112235789999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL  150 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~  150 (166)
                        ++++++++|||+.+|+.+++.+|+. +.+  +.........+++++.+-
T Consensus       213 --i~~~e~i~~GD~~NDi~m~~~ag~~-vam--gna~~~lk~~Ad~v~~~n  258 (272)
T PRK10530        213 --WSMKNVVAFGDNFNDISMLEAAGLG-VAM--GNADDAVKARADLVIGDN  258 (272)
T ss_pred             --CCHHHeEEeCCChhhHHHHHhcCce-EEe--cCchHHHHHhCCEEEecC
Confidence              9999999999999999999999973 333  333333445667766543

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=98.60  E-value=3.7e-07  Score=78.11  Aligned_cols=113  Identities=16%  Similarity=0.062  Sum_probs=76.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+++||+.+.|++|++.|++++++|+.....+. .+.+.+|+..++.     .        .  |+--..++++++  .
T Consensus       566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~-~ia~~lgi~~~~~-----~--------~--p~~K~~~v~~l~--~  627 (741)
T PRK11033        566 QDTLRADARQAISELKALGIKGVMLTGDNPRAAA-AIAGELGIDFRAG-----L--------L--PEDKVKAVTELN--Q  627 (741)
T ss_pred             ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHcCCCeecC-----C--------C--HHHHHHHHHHHh--c
Confidence            3589999999999999999999999999977664 5556579863321     1        1  122233556666  2


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccch--hhCChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADL--VLNSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~--~~~~~~~l~~~l  157 (166)
                       ..+++||||+.+|..+.+.+++   ++..+.........+|.  ..+++..|...+
T Consensus       628 -~~~v~mvGDgiNDapAl~~A~v---gia~g~~~~~a~~~adivl~~~~l~~l~~~i  680 (741)
T PRK11033        628 -HAPLAMVGDGINDAPAMKAASI---GIAMGSGTDVALETADAALTHNRLRGLAQMI  680 (741)
T ss_pred             -CCCEEEEECCHHhHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHHHHH
Confidence             3689999999999999999994   44444322222233443  446677766543

>KOG2630|consensus

Probab=98.57  E-value=8e-07  Score=64.56  Aligned_cols=120  Identities=16%  Similarity=0.142  Sum_probs=90.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc---C----cccccceEEecCCCCCccCCCCChHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK---D----TLKLFHHVVLGSADPEVKQGKPAPDVFLVAA   95 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~---g----l~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~   95 (166)
                      ....++++..+++.++..|++++|.|+++.... +.+..+-   .    +..|||.-         ...|-..+.|..+.
T Consensus       121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~Aq-Kllfg~s~~gdl~~y~~gyfDt~---------iG~K~e~~sy~~I~  190 (254)
T KOG2630|consen  121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQ-KLLFGYSDAGDLRKYISGYFDTT---------IGLKVESQSYKKIG  190 (254)
T ss_pred             cccccchhHHHHHHHhhcCceEEEEcCCcHHHH-HHHHcccCcchHHHHhhhhhhcc---------ccceehhHHHHHHH
Confidence            357899999999999999999999999997755 3332221   1    23455432         12466788999999


Q ss_pred             HHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc-cccc-chhhCChhhhh
Q psy6288          96 KRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR-TEAA-DLVLNSLEEFK  154 (166)
Q Consensus        96 ~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~-~~~~~~~~~l~  154 (166)
                      +..+  .++.+++|+-|.+....+|+.+|+.+.++.++.+.... .+.. -.++.+|..|.
T Consensus       191 ~~Ig--~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l~  249 (254)
T KOG2630|consen  191 HLIG--KSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEILE  249 (254)
T ss_pred             HHhC--CChhheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhhh
Confidence            9999  99999999999999999999999999999998766542 2222 23566766554

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=6e-07  Score=63.17  Aligned_cols=100  Identities=13%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             hhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc--ccc--------------eEEecCCCCC
Q psy6288          17 MDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK--LFH--------------HVVLGSADPE   80 (166)
Q Consensus        17 ~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~--~fd--------------~v~~~~~~~~   80 (166)
                      +..++....+.||.+++++++++++++++|+|++....+...+.+..|-+.  ..|              .+...+ +..
T Consensus        65 le~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~-ds~  143 (220)
T COG4359          65 LEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTD-DSQ  143 (220)
T ss_pred             HHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCC-ccc
Confidence            334445689999999999999999999999999998877666555433211  111              112222 112


Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM  125 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~  125 (166)
                      .+..|      ...++++.  -.++.++|+||+.+|+.+|+.+..
T Consensus       144 fG~dK------~~vI~~l~--e~~e~~fy~GDsvsDlsaaklsDl  180 (220)
T COG4359         144 FGHDK------SSVIHELS--EPNESIFYCGDSVSDLSAAKLSDL  180 (220)
T ss_pred             cCCCc------chhHHHhh--cCCceEEEecCCcccccHhhhhhh
Confidence            34445      24556666  567789999999999999998754

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=98.55  E-value=7.2e-07  Score=67.29  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHH--HHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFE--LKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~--~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ...++||+.++|+.|+++|++++++||.......  ...++.+|+..++ +.++..+   .   .++++.....+.+.++
T Consensus       116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~---~---~~~K~~rr~~I~~~y~  189 (266)
T TIGR01533       116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK---D---KSSKESRRQKVQKDYE  189 (266)
T ss_pred             CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC---C---CCCcHHHHHHHHhcCC
Confidence            4678999999999999999999999998743322  2333446887644 5666554   2   2456778888888888


Q ss_pred             CCCCCCceEEEecCHhHHHHHHH
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKA  122 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~  122 (166)
                        +    +++|||...|+..+..
T Consensus       190 --I----vl~vGD~~~Df~~~~~  206 (266)
T TIGR01533       190 --I----VLLFGDNLLDFDDFFY  206 (266)
T ss_pred             --E----EEEECCCHHHhhhhhc
Confidence              6    8999999999976433

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=98.54  E-value=3.5e-07  Score=79.90  Aligned_cols=129  Identities=16%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc----cceEEecCCC-------------CCccCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL----FHHVVLGSAD-------------PEVKQGK   85 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~----fd~v~~~~~~-------------~~~~~~K   85 (166)
                      ..+++|++.+.++.|++.|++++++|+.....+. .+.+..|+...    ....+++..-             ...-.+.
T Consensus       535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~-~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar  613 (917)
T TIGR01116       535 LDPPRPEVADAIEKCRTAGIRVIMITGDNKETAE-AICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSR  613 (917)
T ss_pred             eCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHH-HHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEe
Confidence            4588999999999999999999999999877664 55555677431    1112222100             0011223


Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC--hhhhhhhh
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS--LEEFKPEL  157 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~--~~~l~~~l  157 (166)
                      -.|+--.++.+.++  ...+.+.|+||+.+|+.+.+++++. +.+..+  .......+|+++.+  |..+...+
T Consensus       614 ~~P~~K~~iV~~lq--~~g~~va~iGDG~ND~~alk~AdVG-ia~g~g--~~~ak~aAD~vl~dd~f~~i~~~i  682 (917)
T TIGR01116       614 VEPSHKSELVELLQ--EQGEIVAMTGDGVNDAPALKKADIG-IAMGSG--TEVAKEASDMVLADDNFATIVAAV  682 (917)
T ss_pred             cCHHHHHHHHHHHH--hcCCeEEEecCCcchHHHHHhCCee-EECCCC--cHHHHHhcCeEEccCCHHHHHHHH
Confidence            33555577777777  6678899999999999999999993 333333  22244567888766  88877765

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>COG4996 Predicted phosphatase [General function prediction only]

Probab=98.51  E-value=4.3e-07  Score=60.45  Aligned_cols=93  Identities=14%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc---
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF---   98 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~---   98 (166)
                      .+..++|.+++++++++++|+.+..+|-+....+ .+.++++++..||+.++...   ....    -.|+.+++.+.   
T Consensus        38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA-~~aLral~~~~yFhy~VieP---hP~K----~~ML~~llr~i~~e  109 (164)
T COG4996          38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKA-IKALRALDLLQYFHYIVIEP---HPYK----FLMLSQLLREINTE  109 (164)
T ss_pred             eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHH-HHHHHHhchhhhEEEEEecC---CChh----HHHHHHHHHHHHHh
Confidence            3568999999999999999999999999986655 44457789999999988866   2222    23444444443   


Q ss_pred             -CCCCCCCceEEEecCHhHHHHHHH
Q psy6288          99 -DEKPQPSKCLVFEDAPNGVLGAKA  122 (166)
Q Consensus        99 -~~~~~~~~~i~IGD~~~Di~~a~~  122 (166)
                       +..+.|++++|++|.---+.-.++
T Consensus       110 r~~~ikP~~Ivy~DDR~iH~~~Iwe  134 (164)
T COG4996         110 RNQKIKPSEIVYLDDRRIHFGNIWE  134 (164)
T ss_pred             hccccCcceEEEEecccccHHHHHH
Confidence             344899999999997643443333

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=98.45  E-value=1.5e-06  Score=69.95  Aligned_cols=108  Identities=17%  Similarity=0.133  Sum_probs=69.3

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc--------CcccccceEEecCCCCC----------------
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK--------DTLKLFHHVVLGSADPE----------------   80 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~--------gl~~~fd~v~~~~~~~~----------------   80 (166)
                      ...|.+..+|+.|+++|.+++++||+...-......-.+        .+.++||.|+.....|.                
T Consensus       183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g  262 (448)
T PF05761_consen  183 HKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETG  262 (448)
T ss_dssp             E--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTS
T ss_pred             cCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCC
Confidence            346889999999999999999999998765543333233        35689999987742110                


Q ss_pred             -ccCC------CC----ChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHc-CCeEEEecCCC
Q psy6288          81 -VKQG------KP----APDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAA-GMSCVMVPDPT  134 (166)
Q Consensus        81 -~~~~------Kp----~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~-G~~~i~v~~~~  134 (166)
                       ....      ++    ...-...+.+-++  +...++++|||++ .|+..++.. |+.+++|...-
T Consensus       263 ~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~--~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~EL  327 (448)
T PF05761_consen  263 KLKWGKYVGPLEKGKVYSGGNWDQLHKLLG--WRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPEL  327 (448)
T ss_dssp             SEECS---SS--TC-EEEE--HHHHHHHCT----GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTH
T ss_pred             ccccccccccccCCCEeecCCHHHHHHHHc--cCCCeEEEECCchhhhhhhhccccceEEEEEehhh
Confidence             0000      11    1123556777788  8899999999999 999999887 99999997763

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>TIGR01684 viral_ppase viral phosphatase

Probab=98.44  E-value=6.8e-07  Score=67.76  Aligned_cols=75  Identities=13%  Similarity=0.196  Sum_probs=59.4

Q ss_pred             HHhhhhhhhcCC----cc-chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCC
Q psy6288          13 VIFDMDGLLLGY----NL-AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA   87 (166)
Q Consensus        13 ~~~~~~~~~~~~----~~-~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~   87 (166)
                      ...|+++.+-..    ++ .||+.++|++|+++|++++|+|++.+..+...+ +.+|+..+|+.+++++   +....||.
T Consensus       129 IvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~G---dv~~~kp~  204 (301)
T TIGR01684       129 VVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGG---HKAEEYST  204 (301)
T ss_pred             EEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECC---ccccCCCC
Confidence            345566644422    23 499999999999999999999999999886655 5579999999999998   88888887


Q ss_pred             hHHH
Q psy6288          88 PDVF   91 (166)
Q Consensus        88 ~~~~   91 (166)
                      ++..
T Consensus       205 ~e~~  208 (301)
T TIGR01684       205 MSTE  208 (301)
T ss_pred             cccc
Confidence            7543

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=98.42  E-value=7.9e-07  Score=63.46  Aligned_cols=88  Identities=16%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc------cCCC----CChHHHHHH---
Q psy6288          28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV------KQGK----PAPDVFLVA---   94 (166)
Q Consensus        28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~------~~~K----p~~~~~~~~---   94 (166)
                      |++.++|+.++++|++++|+|++....+. .+.+.+|+...+  +++.....+.      ....    -+...++.+   
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~-~~~~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~  168 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSPDEIIE-PIAERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR  168 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEEHHHHH-HHHHHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCcHHHHH-HHHHHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence            45559999999999999999999877664 444556776522  2222200000      0000    135555555   


Q ss_pred             HHHcCCCCCCCceEEEecCHhHHHHHH
Q psy6288          95 AKRFDEKPQPSKCLVFEDAPNGVLGAK  121 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~~~Di~~a~  121 (166)
                      ... +  .+..++++|||+.+|+.+++
T Consensus       169 ~~~-~--~~~~~~~~iGDs~~D~~~lr  192 (192)
T PF12710_consen  169 DEE-D--IDPDRVIAIGDSINDLPMLR  192 (192)
T ss_dssp             HHH-T--HTCCEEEEEESSGGGHHHHH
T ss_pred             hhc-C--CCCCeEEEEECCHHHHHHhC
Confidence            334 7  78999999999999999875

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=98.33  E-value=5.3e-06  Score=53.65  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             hhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchh---hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHH
Q psy6288          15 FDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKE---SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV   90 (166)
Q Consensus        15 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~---~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~   90 (166)
                      .|+++.+. ...++||+.++|++|+++|++++++||++..   ....++ +.+|+.--.+.++++.           ...
T Consensus         3 ~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~-----------~~~   70 (101)
T PF13344_consen    3 FDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG-----------MAA   70 (101)
T ss_dssp             EESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH-----------HHH
T ss_pred             EeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH-----------HHH
Confidence            35566554 4679999999999999999999999999633   344455 3468876557777765           233


Q ss_pred             HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288          91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM  125 (166)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~  125 (166)
                      ...+.+..+    ..+++++|-. ......+++|+
T Consensus        71 ~~~l~~~~~----~~~v~vlG~~-~l~~~l~~~G~  100 (101)
T PF13344_consen   71 AEYLKEHKG----GKKVYVLGSD-GLREELREAGF  100 (101)
T ss_dssp             HHHHHHHTT----SSEEEEES-H-HHHHHHHHTTE
T ss_pred             HHHHHhcCC----CCEEEEEcCH-HHHHHHHHcCC
Confidence            333333333    7788888865 44556666664

...

>PRK11590 hypothetical protein; Provisional

Probab=98.21  E-value=5.7e-05  Score=55.16  Aligned_cols=102  Identities=6%  Similarity=-0.109  Sum_probs=66.3

Q ss_pred             CccchhHHHHH-HHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-Ccc-C-CCCC--hHHHHHHHHH
Q psy6288          24 YNLAIGALRLI-NHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVK-Q-GKPA--PDVFLVAAKR   97 (166)
Q Consensus        24 ~~~~~g~~~~l-~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~-~-~Kp~--~~~~~~~~~~   97 (166)
                      ..++||+.+.| +.+++.|++++|+||+....+. .+.+.+|+.. .+.+++.+-.- ..+ . +.+.  .+=...+.+.
T Consensus        94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~-~il~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~  171 (211)
T PRK11590         94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVE-QVYFDTPWLP-RVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERK  171 (211)
T ss_pred             CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHH-HHHHHccccc-cCceEEEEEEEEEccEECCccCCChHHHHHHHHH
Confidence            46799999999 6788899999999999977664 4445456422 23333332000 000 0 1111  2223445555


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                      ++  .+.+.+.+-|||.+|+..-.-+|-+.+.
T Consensus       172 ~~--~~~~~~~aY~Ds~~D~pmL~~a~~~~~v  201 (211)
T PRK11590        172 IG--TPLRLYSGYSDSKQDNPLLYFCQHRWRV  201 (211)
T ss_pred             hC--CCcceEEEecCCcccHHHHHhCCCCEEE
Confidence            67  6778889999999999999999876554

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.20  E-value=4.3e-06  Score=70.88  Aligned_cols=87  Identities=14%  Similarity=0.122  Sum_probs=69.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...+.|++.+.++.|++.|+++.++|+.....+ ..+.+.+|+++++..+.              |+--....++++  .
T Consensus       535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A-~~iA~~lGId~v~Aell--------------PedK~~~V~~l~--~  597 (713)
T COG2217         535 ADELRPDAKEAIAALKALGIKVVMLTGDNRRTA-EAIAKELGIDEVRAELL--------------PEDKAEIVRELQ--A  597 (713)
T ss_pred             eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHHHHcChHhheccCC--------------cHHHHHHHHHHH--h
Confidence            468999999999999999999999999997766 45556679977663322              334466677777  5


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCe
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      ....+.||||+.||..+-..+-+.
T Consensus       598 ~g~~VamVGDGINDAPALA~AdVG  621 (713)
T COG2217         598 EGRKVAMVGDGINDAPALAAADVG  621 (713)
T ss_pred             cCCEEEEEeCCchhHHHHhhcCee
Confidence            668999999999999988887664

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=98.19  E-value=9.1e-06  Score=68.64  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=67.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      .+++|++.+.+++|++.|++++++|+.....+. .+.+.+|+.++|    ...        .  |+--..+.+.++  -.
T Consensus       445 D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~-~iA~~lGI~~v~----a~~--------~--PedK~~~v~~lq--~~  507 (675)
T TIGR01497       445 DIVKGGIKERFAQLRKMGIKTIMITGDNRLTAA-AIAAEAGVDDFI----AEA--------T--PEDKIALIRQEQ--AE  507 (675)
T ss_pred             ccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHcCCCEEE----cCC--------C--HHHHHHHHHHHH--Hc
Confidence            488999999999999999999999999977664 555557986644    211        2  333444555555  44


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                      ...+.|+||+.+|..+-+++++....
T Consensus       508 g~~VamvGDG~NDapAL~~AdvGiAm  533 (675)
T TIGR01497       508 GKLVAMTGDGTNDAPALAQADVGVAM  533 (675)
T ss_pred             CCeEEEECCCcchHHHHHhCCEeEEe
Confidence            56799999999999999999987554

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=98.17  E-value=1.4e-05  Score=67.53  Aligned_cols=89  Identities=9%  Similarity=0.065  Sum_probs=70.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+++|++.+.+++|++.|+++.++|+.....+ ..+.+.+|+.++|    . +         -.|+--..+.++++  .
T Consensus       439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA-~aIA~elGI~~v~----A-~---------~~PedK~~iV~~lQ--~  501 (673)
T PRK14010        439 KDVIKDGLVERFRELREMGIETVMCTGDNELTA-ATIAKEAGVDRFV----A-E---------CKPEDKINVIREEQ--A  501 (673)
T ss_pred             ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCCceEE----c-C---------CCHHHHHHHHHHHH--h
Confidence            348999999999999999999999999997776 4555657997644    1 1         13566677777777  5


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      ..+.+.|+||+.||..+-+++.+...
T Consensus       502 ~G~~VaMtGDGvNDAPALa~ADVGIA  527 (673)
T PRK14010        502 KGHIVAMTGDGTNDAPALAEANVGLA  527 (673)
T ss_pred             CCCEEEEECCChhhHHHHHhCCEEEE
Confidence            66789999999999999999987533

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=98.15  E-value=2.5e-05  Score=57.43  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      +...++.+++.++  ++++++++|||+.+|+.+++.+|...+ +...  .......++++..+
T Consensus       158 Kg~al~~l~~~~~--i~~~~~i~~GD~~NDi~m~~~ag~~va-m~Na--~~~vk~~a~~v~~~  215 (230)
T PRK01158        158 KGTGLKKLAELMG--IDPEEVAAIGDSENDLEMFEVAGFGVA-VANA--DEELKEAADYVTEK  215 (230)
T ss_pred             hHHHHHHHHHHhC--CCHHHEEEECCchhhHHHHHhcCceEE-ecCc--cHHHHHhcceEecC
Confidence            4667788888888  899999999999999999999998653 4333  12233445555544

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=98.12  E-value=1.7e-05  Score=67.15  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=69.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      .++.||+.+.+++|++.|+++.++|+.....+ ..+.+..|++++|    ...          .|+--..+.++++  -.
T Consensus       444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA-~aIA~elGId~v~----A~~----------~PedK~~iV~~lQ--~~  506 (679)
T PRK01122        444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTA-AAIAAEAGVDDFL----AEA----------TPEDKLALIRQEQ--AE  506 (679)
T ss_pred             ccCchhHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCCcEEE----ccC----------CHHHHHHHHHHHH--Hc
Confidence            47899999999999999999999999997766 4555667996643    211          2555566677776  55


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                      ..-+.|+||+.||..+-+++.+....
T Consensus       507 G~~VaMtGDGvNDAPALa~ADVGIAM  532 (679)
T PRK01122        507 GRLVAMTGDGTNDAPALAQADVGVAM  532 (679)
T ss_pred             CCeEEEECCCcchHHHHHhCCEeEEe
Confidence            67799999999999999999876443

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.07  E-value=1.1e-05  Score=56.26  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=60.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-ccc-ceEEecCCCCCccCCCCChHHHHHHH-HHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-KLF-HHVVLGSADPEVKQGKPAPDVFLVAA-KRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~-~~~~   99 (166)
                      ...++||+.++|++|++. +.++|+|++.+..+.. +.+.++.. .+| +.+++.+   ++.  .+.    .+-+ .-++
T Consensus        56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~-vl~~ldp~~~~F~~ri~~rd---~~~--~~~----~KdL~~i~~  124 (156)
T TIGR02250        56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQA-IAKLIDPDGKYFGDRIISRD---ESG--SPH----TKSLLRLFP  124 (156)
T ss_pred             EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHH-HHHHhCcCCCeeccEEEEec---cCC--CCc----cccHHHHcC
Confidence            356799999999999965 9999999999887754 45667887 488 6677766   433  111    2223 3357


Q ss_pred             CCCCCCceEEEecCHhHHH
Q psy6288         100 EKPQPSKCLVFEDAPNGVL  118 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~  118 (166)
                        .+.+.+++|+|++.-..
T Consensus       125 --~d~~~vvivDd~~~~~~  141 (156)
T TIGR02250       125 --ADESMVVIIDDREDVWP  141 (156)
T ss_pred             --CCcccEEEEeCCHHHhh
Confidence              78999999999985333

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=98.02  E-value=2.5e-05  Score=68.70  Aligned_cols=127  Identities=16%  Similarity=0.115  Sum_probs=83.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCC----------------ccCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE----------------VKQGKP   86 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~----------------~~~~Kp   86 (166)
                      ..++.|++.++++.|++.|+++.++|+.....+ ..+.+..|+..--..++++.   +                .-.+.-
T Consensus       577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA-~~iA~~~GI~~~~~~vi~G~---~~~~l~~~el~~~i~~~~Vfar~  652 (941)
T TIGR01517       577 KDPLRPGVREAVQECQRAGITVRMVTGDNIDTA-KAIARNCGILTFGGLAMEGK---EFRRLVYEEMDPILPKLRVLARS  652 (941)
T ss_pred             cCCCchhHHHHHHHHHHCCCEEEEECCCChHHH-HHHHHHcCCCCCCceEeeHH---HhhhCCHHHHHHHhccCeEEEEC
Confidence            358899999999999999999999999997776 45555578853222333332   1                111233


Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL  157 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l  157 (166)
                      .|+--..+.+.++  .....+.|+||+.+|..+-+++.+....=..|.  ......+|+++.  +|..+...+
T Consensus       653 sPe~K~~iV~~lq--~~g~vVam~GDGvNDapALk~AdVGIAmg~~gt--dvAk~aADivL~dd~f~~I~~~i  721 (941)
T TIGR01517       653 SPLDKQLLVLMLK--DMGEVVAVTGDGTNDAPALKLADVGFSMGISGT--EVAKEASDIILLDDNFASIVRAV  721 (941)
T ss_pred             CHHHHHHHHHHHH--HCCCEEEEECCCCchHHHHHhCCcceecCCCcc--HHHHHhCCEEEecCCHHHHHHHH
Confidence            4555566666666  456689999999999999999877544211221  113344555544  566655543

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=98.01  E-value=9e-06  Score=58.48  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=69.8

Q ss_pred             hhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchh-------hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHH
Q psy6288          19 GLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKE-------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVF   91 (166)
Q Consensus        19 ~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~-------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~   91 (166)
                      +.....+|.||+.++|++|.+.|+.+.++|+.+..       .-...+.++++...+-+.+++.+        |      
T Consensus        67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~--------K------  132 (191)
T PF06941_consen   67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD--------K------  132 (191)
T ss_dssp             TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS--------G------
T ss_pred             hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC--------C------
Confidence            45567899999999999999999877777766543       11233444444333323344433        2      


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                          ..++  .+    ++|.|++..+..+...|++.+++..+++....   .-.-+.|-.|+...+++.
T Consensus       133 ----~~v~--~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i~~~  188 (191)
T PF06941_consen  133 ----TLVG--GD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLILSS  188 (191)
T ss_dssp             ----GGC----S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHHHHT
T ss_pred             ----CeEe--cc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHHHhc
Confidence                0223  33    89999999999999999999999888654333   334577777877776543

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=97.98  E-value=2.1e-05  Score=67.65  Aligned_cols=97  Identities=9%  Similarity=-0.028  Sum_probs=71.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc---------------------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV---------------------   81 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~---------------------   81 (166)
                      ..+++|++.++++.|++.|+++.++|+.....+. .+.+..|+...   +++++   +.                     
T Consensus       440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~-~IA~~lGI~~~---~~~~~---~l~~~~~~~~~~~~~~~~~~~~~  512 (755)
T TIGR01647       440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAIAK-ETARRLGLGTN---IYTAD---VLLKGDNRDDLPSGELGEMVEDA  512 (755)
T ss_pred             cCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHH-HHHHHcCCCCC---CcCHH---HhcCCcchhhCCHHHHHHHHHhC
Confidence            3589999999999999999999999999977664 55555788541   11111   00                     


Q ss_pred             -cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          82 -KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        82 -~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                       ...+-.|+--..+.+.++  .....+.|+||+.||..+-+++.+...
T Consensus       513 ~vfAr~~Pe~K~~iV~~lq--~~G~~VamvGDGvNDapAL~~AdVGIA  558 (755)
T TIGR01647       513 DGFAEVFPEHKYEIVEILQ--KRGHLVGMTGDGVNDAPALKKADVGIA  558 (755)
T ss_pred             CEEEecCHHHHHHHHHHHH--hcCCEEEEEcCCcccHHHHHhCCeeEE
Confidence             123334566666777777  667889999999999999999987643

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.97  E-value=1.7e-05  Score=59.23  Aligned_cols=67  Identities=10%  Similarity=-0.026  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHc-------CCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA-------GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ...++.++++++  .++++++||||+.+|+.+++.+       |..++.|.++.    ....+++++++..++..+|..+
T Consensus       169 g~a~~~~~~~~~--~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~----~~~~A~~~~~~~~~v~~~L~~l  242 (244)
T TIGR00685       169 GEIVKRLLWHQP--GSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS----KKTVAKFHLTGPQQVLEFLGLL  242 (244)
T ss_pred             HHHHHHHHHhcc--cCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC----cCCCceEeCCCHHHHHHHHHHH
Confidence            589999999999  8899999999999999999999       77788886442    3456788999999998887543

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=97.95  E-value=3.8e-05  Score=67.04  Aligned_cols=101  Identities=11%  Similarity=-0.016  Sum_probs=72.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-------------CccCCCCChH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-------------EVKQGKPAPD   89 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-------------~~~~~Kp~~~   89 (166)
                      ..+++|++.++++.|++.|+++.++|+.....+ ..+.+..|+..  +.++++..-.             ......-.|+
T Consensus       513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA-~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe  589 (867)
T TIGR01524       513 LDPPKESTKEAIAALFKNGINVKVLTGDNEIVT-ARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPM  589 (867)
T ss_pred             eCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHH
Confidence            458899999999999999999999999987766 55556678852  2233332000             0111223455


Q ss_pred             HHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          90 VFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      --.++.+.++  -..+.+.|+||+.+|..+-+++.+...
T Consensus       590 ~K~~iV~~lq--~~G~vVam~GDGvNDapALk~AdVGIA  626 (867)
T TIGR01524       590 QKSRIIGLLK--KAGHTVGFLGDGINDAPALRKADVGIS  626 (867)
T ss_pred             HHHHHHHHHH--hCCCEEEEECCCcccHHHHHhCCEEEE
Confidence            5566667776  556789999999999999999988744

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=97.95  E-value=3.3e-05  Score=67.64  Aligned_cols=123  Identities=18%  Similarity=0.121  Sum_probs=83.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc----------------cCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV----------------KQGKP   86 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----------------~~~Kp   86 (166)
                      ..+++|++.++++.|++.|+++.++|+.....+ ..+.+.+|+..  +.++++.   +.                -...-
T Consensus       548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA-~aIA~~lGI~~--~~vi~G~---el~~~~~~el~~~v~~~~VfAr~  621 (903)
T PRK15122        548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIVT-AKICREVGLEP--GEPLLGT---EIEAMDDAALAREVEERTVFAKL  621 (903)
T ss_pred             cCccHHHHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCCCC--CCccchH---hhhhCCHHHHHHHhhhCCEEEEe
Confidence            358999999999999999999999999997766 45556678852  2333332   11                12233


Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPE  156 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~  156 (166)
                      .|+--.++.+.++  -..+.+.|+||+.||..+-+++.+.. .+..|.  .-..+.+|.++  +||..+...
T Consensus       622 sPe~K~~iV~~Lq--~~G~vVamtGDGvNDaPALk~ADVGI-Amg~gt--dvAkeaADiVLldd~f~~Iv~a  688 (903)
T PRK15122        622 TPLQKSRVLKALQ--ANGHTVGFLGDGINDAPALRDADVGI-SVDSGA--DIAKESADIILLEKSLMVLEEG  688 (903)
T ss_pred             CHHHHHHHHHHHH--hCCCEEEEECCCchhHHHHHhCCEEE-EeCccc--HHHHHhcCEEEecCChHHHHHH
Confidence            4666677777777  56778999999999999999998863 333332  11234444443  445554443

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=97.93  E-value=7.2e-05  Score=54.79  Aligned_cols=40  Identities=18%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      +....+.+++.+|  ++++++++|||+.+|+.+.+.+|...+
T Consensus       180 Kg~al~~l~~~lg--i~~~~vi~~GD~~NDi~ml~~ag~~va  219 (221)
T TIGR02463       180 KGKAANWLKATYN--QPDVKTLGLGDGPNDLPLLEVADYAVV  219 (221)
T ss_pred             HHHHHHHHHHHhC--CCCCcEEEECCCHHHHHHHHhCCceEE
Confidence            4668899999999  999999999999999999999998754

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=97.92  E-value=3.3e-05  Score=67.57  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=73.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc----------------cCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV----------------KQGKP   86 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----------------~~~Kp   86 (166)
                      ..++.|++.++++.|++.|+++.++|+.....+ ..+.+..|+..  +.++++.   +.                ....-
T Consensus       548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA-~~IA~~lGI~~--~~v~~G~---el~~l~~~el~~~~~~~~VfAr~  621 (902)
T PRK10517        548 LDPPKETTAPALKALKASGVTVKILTGDSELVA-AKVCHEVGLDA--GEVLIGS---DIETLSDDELANLAERTTLFARL  621 (902)
T ss_pred             hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHcCCCc--cCceeHH---HHHhCCHHHHHHHHhhCcEEEEc
Confidence            457899999999999999999999999997766 45556678852  3344433   21                12233


Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                      .|+--.++.+.++  -....+.|+||+.||..+-+++.+....
T Consensus       622 sPe~K~~IV~~Lq--~~G~vVam~GDGvNDaPALk~ADVGIAm  662 (902)
T PRK10517        622 TPMHKERIVTLLK--REGHVVGFMGDGINDAPALRAADIGISV  662 (902)
T ss_pred             CHHHHHHHHHHHH--HCCCEEEEECCCcchHHHHHhCCEEEEe
Confidence            4666677777777  5677899999999999999999876443

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=97.90  E-value=0.00065  Score=49.66  Aligned_cols=103  Identities=5%  Similarity=-0.093  Sum_probs=65.2

Q ss_pred             CccchhHHHHHH-HHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-C-ccCCCCC---hHHHHHHHHH
Q psy6288          24 YNLAIGALRLIN-HLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-E-VKQGKPA---PDVFLVAAKR   97 (166)
Q Consensus        24 ~~~~~g~~~~l~-~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~-~~~~Kp~---~~~~~~~~~~   97 (166)
                      ..++||+.+.|+ .++++|++++|+|++....++ .+.+..++..- +.+++.+-.- + .....+.   .+=...+.+.
T Consensus        93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~-~ia~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~  170 (210)
T TIGR01545        93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVE-AVYFDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQK  170 (210)
T ss_pred             CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHH-HHHHhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHHH
Confidence            368999999996 788899999999999977664 44433333221 2333332000 0 0001111   2223344455


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      ++  .+.+.+.+-|||.+|+..-.-+|-+.+.-
T Consensus       171 ~~--~~~~~~~aYsDS~~D~pmL~~a~~~~~Vn  201 (210)
T TIGR01545       171 IG--SPLKLYSGYSDSKQDNPLLAFCEHRWRVS  201 (210)
T ss_pred             hC--CChhheEEecCCcccHHHHHhCCCcEEEC
Confidence            56  56778899999999999999999876543

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>KOG3120|consensus

Probab=97.89  E-value=2.9e-05  Score=56.35  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=76.8

Q ss_pred             hhhhhhcCCccchhHHHHHHHHHHCCC-CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCC--------------
Q psy6288          16 DMDGLLLGYNLAIGALRLINHLHKHNI-PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE--------------   80 (166)
Q Consensus        16 ~~~~~~~~~~~~~g~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~--------------   80 (166)
                      ++...+...++.||+.++++.+++.|- .+.|+|....-.++.. +++.|+.+.|..|++..+-.+              
T Consensus        75 ~ik~~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~-Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~h  153 (256)
T KOG3120|consen   75 EIKQVLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEI-LEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQH  153 (256)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHH-HHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCC
Confidence            344555678999999999999999875 9999998876666544 566799999988776531100              


Q ss_pred             -ccCCCC---ChHHHHH-HHHHcCCCCCCCceEEEecCHhHHHHHHHcCC-eEEEecCCC
Q psy6288          81 -VKQGKP---APDVFLV-AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM-SCVMVPDPT  134 (166)
Q Consensus        81 -~~~~Kp---~~~~~~~-~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~-~~i~v~~~~  134 (166)
                       +..+-+   +...+.. ..+.++..+..++.+||||+.+|+......-- ..+..-+|+
T Consensus       154 sC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgf  213 (256)
T KOG3120|consen  154 SCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGF  213 (256)
T ss_pred             ccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCC
Confidence             111000   0122222 22222222778899999999999998887644 444444444

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=97.77  E-value=0.00011  Score=65.46  Aligned_cols=127  Identities=15%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc----------ceEEecCCCCCcc----------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF----------HHVVLGSADPEVK----------   82 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f----------d~v~~~~~~~~~~----------   82 (166)
                      ..++.|++.++++.|++.|++++++|+.....+ ..+.+..|+..-.          ..++++.   +..          
T Consensus       644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA-~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~---~l~~l~~~~l~~~  719 (1053)
T TIGR01523       644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETA-KAIAQEVGIIPPNFIHDRDEIMDSMVMTGS---QFDALSDEEVDDL  719 (1053)
T ss_pred             ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHHHcCCCCccccccccccccceeeehH---HhhhcCHHHHHHH
Confidence            458999999999999999999999999997766 4555557884310          1344443   211          


Q ss_pred             ------CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhh
Q psy6288          83 ------QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFK  154 (166)
Q Consensus        83 ------~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~  154 (166)
                            ...-.|+--..+.+.++  -....+.|+||+.+|..+-+.+.+....=..|.  ......+|+++.  +|..+.
T Consensus       720 ~~~~~V~ar~sP~~K~~iV~~lq--~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt--~vak~aADivl~dd~f~~I~  795 (1053)
T TIGR01523       720 KALCLVIARCAPQTKVKMIEALH--RRKAFCAMTGDGVNDSPSLKMANVGIAMGINGS--DVAKDASDIVLSDDNFASIL  795 (1053)
T ss_pred             hhcCeEEEecCHHHHHHHHHHHH--hcCCeeEEeCCCcchHHHHHhCCccEecCCCcc--HHHHHhcCEEEecCCHHHHH
Confidence                  12334555566677776  556789999999999999999987654211221  113345555553  366555


Q ss_pred             hhh
Q psy6288         155 PEL  157 (166)
Q Consensus       155 ~~l  157 (166)
                      ..+
T Consensus       796 ~~i  798 (1053)
T TIGR01523       796 NAI  798 (1053)
T ss_pred             HHH
Confidence            543

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01675 plant-AP plant acid phosphatase

Probab=97.77  E-value=0.00019  Score=53.04  Aligned_cols=90  Identities=12%  Similarity=0.015  Sum_probs=56.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ..++.|++.++++.|+++|++++++|+.+...   ...-|.+ .|+..+ +.++--.   .....|+....-....+++-
T Consensus       118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~-~G~~~~-~~LiLR~---~~d~~~~~~~yKs~~R~~l~  192 (229)
T TIGR01675       118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN-AGFTGW-KHLILRG---LEDSNKTVVTYKSEVRKSLM  192 (229)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH-cCCCCc-CeeeecC---CCCCCchHhHHHHHHHHHHH
Confidence            57899999999999999999999999998544   2233333 477654 4444432   11223332222233333333


Q ss_pred             CCCCCCc-eEEEecCHhHHHH
Q psy6288         100 EKPQPSK-CLVFEDAPNGVLG  119 (166)
Q Consensus       100 ~~~~~~~-~i~IGD~~~Di~~  119 (166)
                        ...-+ +..|||.++|+.+
T Consensus       193 --~~GYrIv~~iGDq~sDl~G  211 (229)
T TIGR01675       193 --EEGYRIWGNIGDQWSDLLG  211 (229)
T ss_pred             --hCCceEEEEECCChHHhcC
Confidence              23333 4569999999965

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=97.74  E-value=8.2e-05  Score=56.70  Aligned_cols=49  Identities=8%  Similarity=0.114  Sum_probs=43.2

Q ss_pred             chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288          27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS   76 (166)
Q Consensus        27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~   76 (166)
                      .|++.++|++|++.|++++|+||+.+..+...+ +.+|+..+|+.+++++
T Consensus       150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g  198 (303)
T PHA03398        150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGG  198 (303)
T ss_pred             ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECC
Confidence            499999999999999999999999888885554 5579999999888886

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.74  E-value=0.00012  Score=64.23  Aligned_cols=105  Identities=14%  Similarity=0.070  Sum_probs=78.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCc----------------cCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEV----------------KQG   84 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~----------------~~~   84 (166)
                      ..+|.+++.++++.|+++|+++.++|+.....+ ..+.+..|+..--  +.++++.   +.                -+.
T Consensus       545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA-~aIa~~~Gi~~~~~~~~vi~G~---el~~l~~~el~~~~~~~~VfA  620 (917)
T COG0474         545 EDPPREDVKEAIEELREAGIKVWMITGDHVETA-IAIAKECGIEAEAESALVIDGA---ELDALSDEELAELVEELSVFA  620 (917)
T ss_pred             cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHH-HHHHHHcCCCCCCCceeEeehH---HhhhcCHHHHHHHhhhCcEEE
Confidence            578999999999999999999999999997766 4555556765433  2255553   21                112


Q ss_pred             CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      .-.|+--.++.+.++  -...-+.|+||+.||+.+-++|.+.......|
T Consensus       621 RvsP~qK~~IV~~lq--~~g~vVamtGDGvNDapALk~ADVGIamg~~G  667 (917)
T COG0474         621 RVSPEQKARIVEALQ--KSGHVVAMTGDGVNDAPALKAADVGIAMGGEG  667 (917)
T ss_pred             EcCHHHHHHHHHHHH--hCCCEEEEeCCCchhHHHHHhcCccEEecccH
Confidence            334666667777777  66788999999999999999998877555544

>smart00775 LNS2 LNS2 domain

Probab=97.68  E-value=0.0011  Score=46.34  Aligned_cols=101  Identities=17%  Similarity=0.122  Sum_probs=62.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHH---HHHhhh--cCcccccceEEecCCCC------CccCCCC---ChH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFE---LKTSRH--KDTLKLFHHVVLGSADP------EVKQGKP---APD   89 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~---~~l~~~--~gl~~~fd~v~~~~~~~------~~~~~Kp---~~~   89 (166)
                      ....|++.+++++++++|++++++|+.+...+.   ..+.+.  .|..-....++++.+..      +....+|   +.+
T Consensus        26 ~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~  105 (157)
T smart00775       26 DWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIA  105 (157)
T ss_pred             CcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence            356899999999999999999999999876653   222221  12111113455554110      0112333   344


Q ss_pred             HHHHHHHHcCCCCCCCce-EEEecCHhHHHHHHHcCCe
Q psy6288          90 VFLVAAKRFDEKPQPSKC-LVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~-i~IGD~~~Di~~a~~~G~~  126 (166)
                      .+..+.+.+.  ...-.. .-+||+.+|+.+-+++|++
T Consensus       106 ~l~~i~~~~~--~~~~~f~~~~gn~~~D~~~y~~~gi~  141 (157)
T smart00775      106 CLRDIKSLFP--PQGNPFYAGFGNRITDVISYSAVGIP  141 (157)
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCchhHHHHHHcCCC
Confidence            5555555554  222233 3478889999999999995

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=97.61  E-value=0.00054  Score=52.16  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=64.4

Q ss_pred             Hhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCChH
Q psy6288          14 IFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPD   89 (166)
Q Consensus        14 ~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~   89 (166)
                      +.|+++.+. ...++||+.++|++|+++|++++++||++...   ...++. .+|+....+.++++.            .
T Consensus         6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~-~~G~~~~~~~i~ts~------------~   72 (279)
T TIGR01452         6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFA-RLGFNGLAEQLFSSA------------L   72 (279)
T ss_pred             EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH-HcCCCCChhhEecHH------------H
Confidence            446666554 35689999999999999999999999976332   223443 357754445555543            2


Q ss_pred             HHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          90 VFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      .....+++..  ....+++++|+.. -....+..|+..+
T Consensus        73 ~~~~~l~~~~--~~~~~v~~iG~~~-~~~~l~~~g~~~~  108 (279)
T TIGR01452        73 CAARLLRQPP--DAPKAVYVIGEEG-LRAELDAAGIRLA  108 (279)
T ss_pred             HHHHHHHhhC--cCCCEEEEEcCHH-HHHHHHHCCCEEe
Confidence            3344455544  3457799999853 2345567787754

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=97.59  E-value=0.00036  Score=52.90  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=38.6

Q ss_pred             CChHHHHHHHHHcCCCCCC-CceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288          86 PAPDVFLVAAKRFDEKPQP-SKCLVFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~-~~~i~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      .+...++.+++.++  +++ +++++|||+.+|+.+++.+|...+.-.
T Consensus       190 ~Kg~al~~l~~~~~--i~~~~~v~~~GDs~NDi~m~~~ag~~vam~N  234 (273)
T PRK00192        190 DKGKAVRWLKELYR--RQDGVETIALGDSPNDLPMLEAADIAVVVPG  234 (273)
T ss_pred             CHHHHHHHHHHHHh--ccCCceEEEEcCChhhHHHHHhCCeeEEeCC
Confidence            44678999999999  999 999999999999999999998765544

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=97.58  E-value=0.00024  Score=63.39  Aligned_cols=128  Identities=15%  Similarity=0.091  Sum_probs=80.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--------------------------------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--------------------------------   70 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--------------------------------   70 (166)
                      +.++.||+.+.++.|+++|++++++||...+.+. .+.+..|+-..-.                                
T Consensus       629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~-~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~  707 (1057)
T TIGR01652       629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVETAI-NIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFN  707 (1057)
T ss_pred             hhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHH-HHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhh
Confidence            5689999999999999999999999999876653 3333234421100                                


Q ss_pred             ---------eEEecCCCCCc----------------------cCCCCChHHHHHHHHHcCCCCC-CCceEEEecCHhHHH
Q psy6288          71 ---------HVVLGSADPEV----------------------KQGKPAPDVFLVAAKRFDEKPQ-PSKCLVFEDAPNGVL  118 (166)
Q Consensus        71 ---------~v~~~~~~~~~----------------------~~~Kp~~~~~~~~~~~~~~~~~-~~~~i~IGD~~~Di~  118 (166)
                               .+++++   ..                      -.++-.|.--..+.+.++  .. ...+++|||+.+|+.
T Consensus       708 ~~~~~~~~~lvi~G~---~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk--~~~~~~vl~iGDG~ND~~  782 (1057)
T TIGR01652       708 NLGDSGNVALVIDGK---SLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVK--KSTGKTTLAIGDGANDVS  782 (1057)
T ss_pred             hhccCCceEEEEccH---HHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHH--hcCCCeEEEEeCCCccHH
Confidence                     122221   10                      111112222223333333  22 567999999999999


Q ss_pred             HHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288         119 GAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       119 ~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +-++|.+.. ++... ...+....+|+++.+|..|...++
T Consensus       783 mlk~AdVGI-gi~g~-eg~qA~~aaD~~i~~F~~L~~lll  820 (1057)
T TIGR01652       783 MIQEADVGV-GISGK-EGMQAVMASDFAIGQFRFLTKLLL  820 (1057)
T ss_pred             HHhhcCeee-EecCh-HHHHHHHhhhhhhhhHHHHHHHHH
Confidence            999997765 44322 111234578999999999888763

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=97.55  E-value=0.00031  Score=51.30  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=44.6

Q ss_pred             CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC
Q psy6288          85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN  148 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~  148 (166)
                      -.+...++.+++.++  ++++++++|||+.+|+.+++.+|...+.-. +  .++....++++..
T Consensus       146 ~~K~~~i~~l~~~~~--i~~~~~i~iGDs~ND~~ml~~ag~~vam~n-a--~~~~k~~A~~v~~  204 (215)
T TIGR01487       146 VDKGVGVEKLKELLG--IKPEEVAAIGDSENDIDLFRVVGFKVAVAN-A--DDQLKEIADYVTS  204 (215)
T ss_pred             CChHHHHHHHHHHhC--CCHHHEEEECCCHHHHHHHHhCCCeEEcCC-c--cHHHHHhCCEEcC
Confidence            345789999999999  999999999999999999999998755442 2  2223344555554

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>KOG0207|consensus

Probab=97.50  E-value=0.00064  Score=58.44  Aligned_cols=87  Identities=11%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++.|++...++.|++.|++++++|+.....+. .+.+..|    ++.|++.-        +  |+--....++++  .
T Consensus       721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~-svA~~VG----i~~V~aev--------~--P~~K~~~Ik~lq--~  783 (951)
T KOG0207|consen  721 EDQVRPDAALAVAELKSMGIKVVMLTGDNDAAAR-SVAQQVG----IDNVYAEV--------L--PEQKAEKIKEIQ--K  783 (951)
T ss_pred             ccccchhHHHHHHHHHhcCceEEEEcCCCHHHHH-HHHHhhC----cceEEecc--------C--chhhHHHHHHHH--h
Confidence            4678999999999999999999999999987764 4445467    45555433        2  222345556666  5


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCe
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      ....+.||||+.||-.+-..+.+.
T Consensus       784 ~~~~VaMVGDGINDaPALA~AdVG  807 (951)
T KOG0207|consen  784 NGGPVAMVGDGINDAPALAQADVG  807 (951)
T ss_pred             cCCcEEEEeCCCCccHHHHhhccc
Confidence            567899999999998877776654

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=97.49  E-value=0.00045  Score=50.55  Aligned_cols=62  Identities=24%  Similarity=0.252  Sum_probs=46.8

Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      ...++...++.++++++  ++++++++|||+.+|+.+++.+|.. +.+...  .++....++++..+
T Consensus       146 ~~~~K~~~i~~l~~~~~--i~~~~~i~~GD~~NDi~m~~~ag~~-vam~Na--~~~~k~~A~~vt~~  207 (225)
T TIGR01482       146 QGVNKGVAVKKLKEKLG--IKPGETLVCGDSENDIDLFEVPGFG-VAVANA--QPELKEWADYVTES  207 (225)
T ss_pred             CCCCHHHHHHHHHHHhC--CCHHHEEEECCCHhhHHHHHhcCce-EEcCCh--hHHHHHhcCeecCC
Confidence            34566889999999999  9999999999999999999999986 444333  22334455655543

catalyze the same reaction as SPP.

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=97.47  E-value=0.0011  Score=49.96  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=35.2

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      +...++.+++.++  +++++++.|||+.+|+..-+.+|...+.-
T Consensus       190 K~~al~~l~~~lg--i~~~~v~afGD~~ND~~Ml~~ag~gvam~  231 (264)
T COG0561         190 KGYALQRLAKLLG--IKLEEVIAFGDSTNDIEMLEVAGLGVAMG  231 (264)
T ss_pred             hHHHHHHHHHHhC--CCHHHeEEeCCccccHHHHHhcCeeeecc
Confidence            3556778888899  88999999999999999999888765443

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=97.43  E-value=0.00042  Score=51.83  Aligned_cols=51  Identities=20%  Similarity=0.272  Sum_probs=45.3

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      .....++...++.+++.++  ++++++++|||+.+|+.+.+.++..++.+...
T Consensus       162 ~~~~~~K~~al~~l~~~~~--i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na  212 (249)
T TIGR01485       162 LPQGSGKGQALQYLLQKLA--MEPSQTLVCGDSGNDIELFEIGSVRGVIVSNA  212 (249)
T ss_pred             EeCCCChHHHHHHHHHHcC--CCccCEEEEECChhHHHHHHccCCcEEEECCC
Confidence            3456778999999999999  99999999999999999999988888888665

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>KOG2961|consensus

Probab=97.41  E-value=0.00031  Score=48.26  Aligned_cols=103  Identities=14%  Similarity=-0.009  Sum_probs=66.5

Q ss_pred             CCccchhHHHHHHHHHHC-C-CCEEEEeCCchh-------hHHHHHhhhcCcccccceEEecCCCCCccCCCCC--hHHH
Q psy6288          23 GYNLAIGALRLINHLHKH-N-IPFAIATSSAKE-------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA--PDVF   91 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~-g-~~i~ivS~~~~~-------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~--~~~~   91 (166)
                      +..+.|....-+++++.. | ..++++||+.-.       ...+.+.+..|+.-     +.      ....||.  .+.+
T Consensus        59 ~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV-----lR------Hs~kKP~ct~E~~  127 (190)
T KOG2961|consen   59 SLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV-----LR------HSVKKPACTAEEV  127 (190)
T ss_pred             ccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce-----Ee------ecccCCCccHHHH
Confidence            345678888888888864 4 679999987422       12234443334421     11      1223443  2334


Q ss_pred             HHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK  137 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~  137 (166)
                      ......-.. ..+++++||||.+ +||..|...|.-.+|...|....
T Consensus       128 ~y~~~Nshv-~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~  173 (190)
T KOG2961|consen  128 EYHFGNSHV-CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAE  173 (190)
T ss_pred             HHHhCCccc-CChhHeEEEccchhhhHhhhhhccceeEEeccccccc
Confidence            443332222 5789999999999 99999999999999999886443

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=97.40  E-value=0.00079  Score=59.83  Aligned_cols=100  Identities=14%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc------------------------ceEEecCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF------------------------HHVVLGSAD   78 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f------------------------d~v~~~~~~   78 (166)
                      ..++.|++.+.+++|++.|+++.++|+.....+.. +.+..|+..--                        ..++++.  
T Consensus       566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~-ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~--  642 (997)
T TIGR01106       566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA-IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS--  642 (997)
T ss_pred             cCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-HHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH--
Confidence            45889999999999999999999999999887644 44446763210                        1234432  


Q ss_pred             CCc------------------cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          79 PEV------------------KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        79 ~~~------------------~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                       +.                  -++.-.|+--.++.+.++  ....-+.|+||+.+|+.+-+.+.+...
T Consensus       643 -~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq--~~g~vv~~~GDG~ND~paLk~AdVGia  707 (997)
T TIGR01106       643 -DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQ--RQGAIVAVTGDGVNDSPALKKADIGVA  707 (997)
T ss_pred             -HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHH--HCCCEEEEECCCcccHHHHhhCCccee
Confidence             11                  223334555555666666  455679999999999999999887643

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>KOG2470|consensus

Probab=97.39  E-value=0.00053  Score=53.21  Aligned_cols=106  Identities=14%  Similarity=0.108  Sum_probs=72.4

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC--cccccceEEecCCCCCcc--CCCC---------------
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD--TLKLFHHVVLGSADPEVK--QGKP---------------   86 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g--l~~~fd~v~~~~~~~~~~--~~Kp---------------   86 (166)
                      -.|....+|+.|+++|.+++++||++...+..-..-..|  +.+.||.|+.....++..  .++|               
T Consensus       241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdk  320 (510)
T KOG2470|consen  241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDK  320 (510)
T ss_pred             ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhh
Confidence            356788899999999999999999998776544332223  457888776553222111  1122               


Q ss_pred             ---------C-hHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHH-HcCCeEEEecCC
Q psy6288          87 ---------A-PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAK-AAGMSCVMVPDP  133 (166)
Q Consensus        87 ---------~-~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~-~~G~~~i~v~~~  133 (166)
                               . ..-+...++--+  +-..+++++||.+ +|+..-. +.|+.+-.+...
T Consensus       321 v~klekgkiYy~G~l~~flelt~--WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~E  377 (510)
T KOG2470|consen  321 VDKLEKGKIYYQGNLKSFLELTG--WRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPE  377 (510)
T ss_pred             hhhcccCceeeeccHHHHHHHhc--cCCCeeEEecCcchhhhhhhHhhcccccccchHH
Confidence                     0 111334555556  8899999999999 9998888 899988777543

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=97.32  E-value=0.001  Score=46.96  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=71.1

Q ss_pred             HHhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCCh
Q psy6288          13 VIFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP   88 (166)
Q Consensus        13 ~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~   88 (166)
                      ++......+.+ ..|.+-++++|+-=++.|-.++.+|+.+...   +.+.|.+.+.+....-.++.++      ..||..
T Consensus       101 FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd------k~k~~q  174 (237)
T COG3700         101 FWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD------KPKPGQ  174 (237)
T ss_pred             HHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC------CCCccc
Confidence            34444443443 3456677788888888999999999986543   3344455566666555566666      123333


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      ..--+.+++.+      --++-||+-+||.+|+++|+..|-+-+.
T Consensus       175 y~Kt~~i~~~~------~~IhYGDSD~Di~AAkeaG~RgIRilRA  213 (237)
T COG3700         175 YTKTQWIQDKN------IRIHYGDSDNDITAAKEAGARGIRILRA  213 (237)
T ss_pred             ccccHHHHhcC------ceEEecCCchhhhHHHhcCccceeEEec
Confidence            33334444544      3588999999999999999998877654

>PLN03190 aminophospholipid translocase; Provisional

Probab=97.28  E-value=0.0012  Score=59.51  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=40.1

Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ..-+++|||+.+|+.+-++|.+.. ++... .-.+....+|+.+..|..|..+|+
T Consensus       871 ~~vtlaIGDGaNDv~mIq~AdVGI-GIsG~-EG~qA~~aSDfaI~~Fr~L~rLLl  923 (1178)
T PLN03190        871 SDMTLAIGDGANDVSMIQMADVGV-GISGQ-EGRQAVMASDFAMGQFRFLVPLLL  923 (1178)
T ss_pred             CcEEEEECCCcchHHHHHhcCeee-eecCc-hhHHHHHhhccchhhhHHHHHHHH
Confidence            356899999999999999997665 44322 212344577999999999988876

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=97.23  E-value=0.0006  Score=49.25  Aligned_cols=43  Identities=19%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      ..++...++.++++++  ++++++++|||+.+|+.+++.+|+..+
T Consensus       161 ~~~K~~~~~~~~~~~~--~~~~~~~~~GD~~nD~~~~~~~~~~va  203 (204)
T TIGR01484       161 GVDKGSALQALLKELN--GKRDEILAFGDSGNDEEMFEVAGLAVA  203 (204)
T ss_pred             CCChHHHHHHHHHHhC--CCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence            5667899999999999  999999999999999999999998653

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=97.22  E-value=0.0026  Score=52.41  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=64.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++.|++.+.++.|++.|++++++|+.....+ ..+.+..|+   +     +.         -.|+.-..+.+++.  .
T Consensus       345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a-~~ia~~lgi---~-----~~---------~~p~~K~~~v~~l~--~  404 (499)
T TIGR01494       345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTA-KAIAKELGI---F-----AR---------VTPEEKAALVEALQ--K  404 (499)
T ss_pred             cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHHHHcCc---e-----ec---------cCHHHHHHHHHHHH--H
Confidence            358899999999999999999999999997766 444555565   1     11         12444456666665  4


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCe
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      ....+.|+||+.+|..+-+.+++.
T Consensus       405 ~g~~v~~vGDg~nD~~al~~Advg  428 (499)
T TIGR01494       405 KGRVVAMTGDGVNDAPALKKADVG  428 (499)
T ss_pred             CCCEEEEECCChhhHHHHHhCCCc
Confidence            567899999999999999988765

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=97.20  E-value=0.0032  Score=56.41  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=35.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      ..++.|++.+.++.|+++|+++.++|+.....+.. +.+..|+.
T Consensus       654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~-iA~~~gii  696 (1054)
T TIGR01657       654 ENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVH-VARECGIV  696 (1054)
T ss_pred             ecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHH-HHHHcCCC
Confidence            56899999999999999999999999999777644 44546774

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.16  E-value=0.0015  Score=52.40  Aligned_cols=101  Identities=16%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             ccchh--HHHHHHHHHHCCCCEEEEeCCchhh-HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          25 NLAIG--ALRLINHLHKHNIPFAIATSSAKES-FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        25 ~~~~g--~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      .++|.  ..++.+.+.+.|.+++++|....+. +.+.++...|.+.+--.+..+.   +....|.....|..+++.-+  
T Consensus        97 vLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~---e~rl~KnSg~LFk~Vlk~En--  171 (635)
T COG5610          97 VLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSS---EFRLKKNSGNLFKAVLKLEN--  171 (635)
T ss_pred             EeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecc---eeehhcccchHHHHHHhhcC--
Confidence            34444  4578999999999999999885443 3333444456654433456666   78888999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEe
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMV  130 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v  130 (166)
                      +++.+.+++||+. .|+..+++.|+.+.+-
T Consensus       172 Vd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~  201 (635)
T COG5610         172 VDPKKWIHCGDNWVADYLKPKNLGISTLFY  201 (635)
T ss_pred             CChhheEEecCchhhhhcCccccchhHHHH
Confidence            9999999999988 9999999999987755

>KOG0202|consensus

Probab=97.16  E-value=0.002  Score=55.24  Aligned_cols=101  Identities=14%  Similarity=0.062  Sum_probs=73.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc----eEEecCCCCC-------------ccCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH----HVVLGSADPE-------------VKQGK   85 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd----~v~~~~~~~~-------------~~~~K   85 (166)
                      ..+|++++.++++.|++.|+++.++|+.....+ ..+-+..|+-..-+    ..+++.-.++             .-...
T Consensus       582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA-~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR  660 (972)
T KOG0202|consen  582 LDPPRPEVADAIELCRQAGIRVIMITGDNKETA-EAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFAR  660 (972)
T ss_pred             cCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHH-HHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEe
Confidence            358999999999999999999999999998876 55666678644333    2233320000             00122


Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      -.|+.-.++.+.++  -..+=+.|-||+.+|..+-+.+.+.
T Consensus       661 ~~P~HK~kIVeaLq--~~geivAMTGDGVNDApALK~AdIG  699 (972)
T KOG0202|consen  661 AEPQHKLKIVEALQ--SRGEVVAMTGDGVNDAPALKKADIG  699 (972)
T ss_pred             cCchhHHHHHHHHH--hcCCEEEecCCCccchhhhhhcccc
Confidence            24667778888888  6778899999999999999998765

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=97.12  E-value=0.0006  Score=51.07  Aligned_cols=60  Identities=20%  Similarity=0.209  Sum_probs=45.1

Q ss_pred             CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      -.+...++.+++.++  ++++++++|||+.+|+.+.+.+|+..+. ..+  .......+++++.+
T Consensus       187 ~~K~~~i~~~~~~~~--~~~~~~~~~GD~~nD~~m~~~~~~~~a~-~na--~~~~k~~a~~~~~~  246 (256)
T TIGR00099       187 VSKGSALQSLAEALG--ISLEDVIAFGDGMNDIEMLEAAGYGVAM-GNA--DEELKALADYVTDS  246 (256)
T ss_pred             CChHHHHHHHHHHcC--CCHHHEEEeCCcHHhHHHHHhCCceeEe-cCc--hHHHHHhCCEEecC
Confidence            335889999999999  9999999999999999999999986444 222  22333445555544

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=97.11  E-value=0.00078  Score=49.88  Aligned_cols=49  Identities=12%  Similarity=0.044  Sum_probs=41.5

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecC
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD  132 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~  132 (166)
                      .....++...++.++++++  ++++++++|||+.+|+.+.+.+|... .+.+
T Consensus       154 ~~~~~~K~~al~~l~~~~g--~~~~~~i~~GD~~nD~~ml~~~~~~i-av~n  202 (236)
T TIGR02471       154 LPLRASKGLALRYLSYRWG--LPLEQILVAGDSGNDEEMLRGLTLGV-VVGN  202 (236)
T ss_pred             eeCCCChHHHHHHHHHHhC--CCHHHEEEEcCCccHHHHHcCCCcEE-EEcC
Confidence            4456778999999999999  99999999999999999999987554 4443

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=97.11  E-value=0.00099  Score=49.39  Aligned_cols=95  Identities=17%  Similarity=0.068  Sum_probs=55.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhH---HHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF---ELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~---~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      .++.||+.+|++.+++.|+.|+++||.+...-   ..-|.+ .|...+-..++....+............-+..+++-| 
T Consensus       114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~-~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~G-  191 (229)
T PF03767_consen  114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKK-AGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKG-  191 (229)
T ss_dssp             GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHH-HTTSTBSCGEEEEESSTSS------SHHHHHHHHHTT-
T ss_pred             CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHH-cCCCccchhccccccccccccccccchHHHHHHHHcC-
Confidence            47899999999999999999999999875532   122333 4765543334444411000011122333333333333 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHc
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~  123 (166)
                         ..=+.+|||.++|+..++..
T Consensus       192 ---y~Ii~~iGD~~~D~~~~~~~  211 (229)
T PF03767_consen  192 ---YRIIANIGDQLSDFSGAKTA  211 (229)
T ss_dssp             ---EEEEEEEESSGGGCHCTHHH
T ss_pred             ---CcEEEEeCCCHHHhhccccc
Confidence               22278899999999995443

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=97.07  E-value=0.0042  Score=46.14  Aligned_cols=96  Identities=21%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             hhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHH
Q psy6288          15 FDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV   90 (166)
Q Consensus        15 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~   90 (166)
                      .|+++.+. ...++|++.++|+.++++|+++.++||+.   ......++.+.+|+.-..+.++++.           ...
T Consensus         3 fD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~-----------~~~   71 (236)
T TIGR01460         3 FDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG-----------SVT   71 (236)
T ss_pred             EeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH-----------HHH
Confidence            45666544 35689999999999999999999999776   3334445555457665566666654           222


Q ss_pred             HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288          91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      ...+.++..    ...++++|.. ......+..|+.
T Consensus        72 ~~~l~~~~~----~~~v~v~G~~-~~~~~l~~~g~~  102 (236)
T TIGR01460        72 KDLLRQRFE----GEKVYVIGVG-ELRESLEGLGFR  102 (236)
T ss_pred             HHHHHHhCC----CCEEEEECCH-HHHHHHHHcCCc
Confidence            333333332    3457778863 344555666653

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=97.04  E-value=0.00088  Score=46.55  Aligned_cols=84  Identities=20%  Similarity=0.268  Sum_probs=55.6

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc-ccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT-LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl-~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++||+.+||+.|.+. +.++|.|.+....+...+ +.+.. ..+|+.++..+   ++...+..   +.+-+++++  .
T Consensus        35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~---~~~~~~~~---~~KdL~~l~--~  104 (159)
T PF03031_consen   35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRD---DCTFDKGS---YIKDLSKLG--R  104 (159)
T ss_dssp             EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGG---GSEEETTE---EE--GGGSS--S
T ss_pred             EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhccccccccccc---cccccccc---cccchHHHh--h
Confidence            45799999999999775 999999999977765444 54555 46788888766   44322211   125677777  7


Q ss_pred             CCCceEEEecCHhHH
Q psy6288         103 QPSKCLVFEDAPNGV  117 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di  117 (166)
                      +.+++++|.|++.-.
T Consensus       105 ~~~~vvivDD~~~~~  119 (159)
T PF03031_consen  105 DLDNVVIVDDSPRKW  119 (159)
T ss_dssp             -GGGEEEEES-GGGG
T ss_pred             ccccEEEEeCCHHHe
Confidence            899999999999643

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice

Probab=97.03  E-value=0.0035  Score=46.73  Aligned_cols=97  Identities=19%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec----CCCC-CccCCCCCh-------HH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG----SADP-EVKQGKPAP-------DV   90 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~----~~~~-~~~~~Kp~~-------~~   90 (166)
                      ...+++|+.++++.|+++++++.|+|.+--..+...+.++ +....--.|++.    +.++ -.+...|-.       ..
T Consensus        88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~  166 (246)
T PF05822_consen   88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA  166 (246)
T ss_dssp             ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred             chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence            4689999999999999999999999999988887777765 432111122221    1000 112222211       11


Q ss_pred             HH--HHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288          91 FL--VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus        91 ~~--~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~  123 (166)
                      +.  ...+.+   -...+++.+||+..|+..|..+
T Consensus       167 l~~~~~~~~~---~~R~NvlLlGDslgD~~Ma~G~  198 (246)
T PF05822_consen  167 LEDSPYFKQL---KKRTNVLLLGDSLGDLHMADGV  198 (246)
T ss_dssp             HTTHHHHHCT---TT--EEEEEESSSGGGGTTTT-
T ss_pred             ccCchHHHHh---ccCCcEEEecCccCChHhhcCC
Confidence            11  111223   3688999999999999998766

The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=97.02  E-value=0.0049  Score=46.63  Aligned_cols=105  Identities=12%  Similarity=0.129  Sum_probs=58.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh---hcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR---HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~---~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ..++.|++.++.+.+++.|++|+++||.+... +....+   ..|...+ +.++--..  .....+.....-....+++-
T Consensus       143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~-r~aT~~NL~kaGy~~~-~~LiLR~~--~D~~~~~av~yKs~~R~~li  218 (275)
T TIGR01680       143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDK-QAVTEANLKKAGYHTW-EKLILKDP--QDNSAENAVEYKTAARAKLI  218 (275)
T ss_pred             cCCCChHHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHHHHHcCCCCc-ceeeecCC--CCCccchhHHHHHHHHHHHH
Confidence            57889999999999999999999999998442 222222   2366543 44433320  11222221222222223322


Q ss_pred             CCCC-CCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288         100 EKPQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       100 ~~~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                        .. ..=+..|||.++|+.+....+-++.-+..+
T Consensus       219 --~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP  251 (275)
T TIGR01680       219 --QEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNP  251 (275)
T ss_pred             --HcCceEEEEECCCHHhccCCCccCcceecCCCc
Confidence              12 233566999999996654222344444443

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=96.99  E-value=0.00076  Score=50.85  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=45.3

Q ss_pred             CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      -.+..+++.+++.+|  +++++++.|||+.+|+..-+.+|... .+..+  ..+....++++..+
T Consensus       195 vsKg~al~~l~~~~g--i~~~~v~afGD~~NDi~Ml~~ag~~v-Am~NA--~~~vK~~A~~vt~~  254 (270)
T PRK10513        195 VNKGTGVKSLAEHLG--IKPEEVMAIGDQENDIAMIEYAGVGV-AMGNA--IPSVKEVAQFVTKS  254 (270)
T ss_pred             CChHHHHHHHHHHhC--CCHHHEEEECCchhhHHHHHhCCceE-EecCc--cHHHHHhcCeeccC
Confidence            334789999999999  99999999999999999999999843 33333  23334455665544

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=96.88  E-value=0.0025  Score=48.32  Aligned_cols=66  Identities=12%  Similarity=-0.004  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHc---CCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCC
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA---GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~---G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                      ....+++++.++  ++.++++++||+.+|..+-+.+   |..++.|..+.      ..+.+.+++..++..+|..+.
T Consensus       176 g~al~~ll~~~~--~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~------~~A~~~l~~~~~v~~~L~~l~  244 (266)
T PRK10187        176 GEAIAAFMQEAP--FAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA------TQASWRLAGVPDVWSWLEMIT  244 (266)
T ss_pred             HHHHHHHHHhcC--CCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC------CcCeEeCCCHHHHHHHHHHHH
Confidence            456677788888  8899999999999999998877   45667775542      345667777777777765543

>KOG3128|consensus

Probab=96.78  E-value=0.0049  Score=45.92  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=63.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec----CCCC-CccCCCCChHH-------H
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG----SADP-EVKQGKPAPDV-------F   91 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~----~~~~-~~~~~Kp~~~~-------~   91 (166)
                      ..+.+|..++++.|+++++++.|+|.+.-..++..+.+..++.. +-.+++-    +-++ -.+..+|-...       .
T Consensus       137 i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~  215 (298)
T KOG3128|consen  137 IALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL  215 (298)
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence            46788999999999999999999999988888888877655433 2222211    1000 12223332222       2


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA  123 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~  123 (166)
                      +..-+.+....+..++++.||++.|+..|.-+
T Consensus       216 ~~~s~yf~~~~~~~nVillGdsigdl~ma~gv  247 (298)
T KOG3128|consen  216 QNESEYFHQLAGRVNVILLGDSIGDLHMADGV  247 (298)
T ss_pred             HhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence            22223333224788999999999999988754

>TIGR01658 EYA-cons_domain eyes absent protein conserved domain

Probab=96.66  E-value=0.029  Score=41.71  Aligned_cols=81  Identities=16%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHH
Q psy6288          43 PFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA  120 (166)
Q Consensus        43 ~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a  120 (166)
                      .+.|-|+.-.+.+.+.++  +|+..+|.  .|+++-     ..+|  .+-|+++.+++|  -+...-++|||+...-.+|
T Consensus       178 NvLVTs~qLVPaLaKcLL--y~L~~~f~ieNIYSa~-----kvGK--~~cFe~I~~Rfg--~p~~~f~~IGDG~eEe~aA  246 (274)
T TIGR01658       178 NVLVTSGQLIPSLAKCLL--FRLDTIFRIENVYSSI-----KVGK--LQCFKWIKERFG--HPKVRFCAIGDGWEECTAA  246 (274)
T ss_pred             EEEEEcCccHHHHHHHHH--hccCCccccccccchh-----hcch--HHHHHHHHHHhC--CCCceEEEeCCChhHHHHH
Confidence            344444444444444444  47777773  455544     2344  889999999999  7778899999999999999


Q ss_pred             HHcCCeEEEecCCC
Q psy6288         121 KAAGMSCVMVPDPT  134 (166)
Q Consensus       121 ~~~G~~~i~v~~~~  134 (166)
                      +..+++.+-|....
T Consensus       247 k~l~wPFw~I~~h~  260 (274)
T TIGR01658       247 QAMNWPFVKIDLHP  260 (274)
T ss_pred             HhcCCCeEEeecCC
Confidence            99999999887653

This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.

>PRK10976 putative hydrolase; Provisional

Probab=96.63  E-value=0.0024  Score=48.08  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=38.5

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +..+++.+++.+|  +++++++.|||+.+|+.+-+.+|.. +.+..+
T Consensus       191 Kg~al~~l~~~lg--i~~~~viafGD~~NDi~Ml~~ag~~-vAm~NA  234 (266)
T PRK10976        191 KGHALEAVAKKLG--YSLKDCIAFGDGMNDAEMLSMAGKG-CIMGNA  234 (266)
T ss_pred             hHHHHHHHHHHcC--CCHHHeEEEcCCcccHHHHHHcCCC-eeecCC
Confidence            4889999999999  9999999999999999999999985 444433

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=96.47  E-value=0.0083  Score=44.97  Aligned_cols=45  Identities=11%  Similarity=0.121  Sum_probs=38.7

Q ss_pred             CCChHHHHHHHHHcCCCCC--CCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288          85 KPAPDVFLVAAKRFDEKPQ--PSKCLVFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~--~~~~i~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      -.+....+.+++.++  ++  .+++++|||+.+|+.+.+.+|...+.-.
T Consensus       175 ~~Kg~ai~~l~~~~~--i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~N  221 (256)
T TIGR01486       175 SDKGKAANALKQFYN--QPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPG  221 (256)
T ss_pred             CCHHHHHHHHHHHHh--hcCCCceEEEEcCCHhhHHHHHHCCEEEEeCC
Confidence            345778899999999  88  9999999999999999999998765443

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=96.34  E-value=0.048  Score=41.05  Aligned_cols=108  Identities=14%  Similarity=0.225  Sum_probs=70.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh--hcCcc--cc-cc--eEE----ecC--CC-C------CccC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR--HKDTL--KL-FH--HVV----LGS--AD-P------EVKQ   83 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~--~~gl~--~~-fd--~v~----~~~--~~-~------~~~~   83 (166)
                      -..-+.+.++++.|++.|+++..+|..........+.+  .+|++  .. |.  ..+    ...  .+ +      -...
T Consensus        80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~  159 (252)
T PF11019_consen   80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG  159 (252)
T ss_pred             EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence            34678999999999999999999998875443222222  24542  11 10  000    000  00 0      0112


Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHH----cCCeEEEecCC
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKA----AGMSCVMVPDP  133 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~----~G~~~i~v~~~  133 (166)
                      +-++..++...+.+.+  ..|+++|||+|+...+....+    .|+..+++...
T Consensus       160 ~~~KG~~L~~fL~~~~--~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt  211 (252)
T PF11019_consen  160 GQDKGEVLKYFLDKIN--QSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT  211 (252)
T ss_pred             CCccHHHHHHHHHHcC--CCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence            3456799999999999  999999999999977766554    57777766544

The function is not known.

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=96.32  E-value=0.0054  Score=46.33  Aligned_cols=43  Identities=16%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD  132 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~  132 (166)
                      +...++.+++.+|  +++++++.|||+.+|+.+-+.+|. ++.+..
T Consensus       189 Kg~al~~l~~~~g--i~~~~v~afGD~~NDi~Ml~~ag~-~vAm~N  231 (272)
T PRK15126        189 KGAALAVLSQHLG--LSLADCMAFGDAMNDREMLGSVGR-GFIMGN  231 (272)
T ss_pred             hHHHHHHHHHHhC--CCHHHeEEecCCHHHHHHHHHcCC-ceeccC
Confidence            4789999999999  999999999999999999999997 444443

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=96.30  E-value=0.006  Score=45.98  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=42.3

Q ss_pred             hhhhhhhcC-Cc----cchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEec
Q psy6288          15 FDMDGLLLG-YN----LAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        15 ~~~~~~~~~-~~----~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~   75 (166)
                      .|+++.+.. ..    +.|++.++|++|+++|++++++||++...   ...++.+ +|+.--.+.++++
T Consensus         6 ~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~-~g~~~~~~~i~ts   73 (257)
T TIGR01458         6 LDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQR-LGFDISEDEVFTP   73 (257)
T ss_pred             EeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH-cCCCCCHHHeEcH
Confidence            455665543 33    89999999999999999999999986554   4444433 5775434555555

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=96.26  E-value=0.007  Score=44.42  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=44.0

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE  151 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~  151 (166)
                      +..+++.+++.++  +++++++.|||+.+|+.+.+.+|.. +.+...  .......+++++.+-.
T Consensus       187 K~~ai~~l~~~~~--i~~~~~~~~GD~~ND~~Ml~~~~~~-~am~na--~~~~k~~a~~i~~~~~  246 (254)
T PF08282_consen  187 KGSAIKYLLEYLG--ISPEDIIAFGDSENDIEMLELAGYS-VAMGNA--TPELKKAADYITPSNN  246 (254)
T ss_dssp             HHHHHHHHHHHHT--TSGGGEEEEESSGGGHHHHHHSSEE-EEETTS---HHHHHHSSEEESSGT
T ss_pred             HHHHHHHHhhhcc--cccceeEEeecccccHhHHhhcCeE-EEEcCC--CHHHHHhCCEEecCCC
Confidence            3678889999999  9999999999999999999999877 344332  2233444555544433

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=96.17  E-value=0.014  Score=45.49  Aligned_cols=98  Identities=18%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             Hhhhhhhhc-CCccchhHHHHHHHHHHC----CCCEEEEeCCc---hhhHHHHHhhhcCcccccceEEecCCCCCccCCC
Q psy6288          14 IFDMDGLLL-GYNLAIGALRLINHLHKH----NIPFAIATSSA---KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGK   85 (166)
Q Consensus        14 ~~~~~~~~~-~~~~~~g~~~~l~~l~~~----g~~i~ivS~~~---~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~K   85 (166)
                      +.|+++.+. ...+.|++.++++.|++.    |+++.++||+.   .......+.+.+|+.--.+.++++.         
T Consensus         4 ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------   74 (321)
T TIGR01456         4 AFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------   74 (321)
T ss_pred             EEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------
Confidence            356677555 356799999999999998    99999999996   3333344545567653333333332         


Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                        . .....+++++  .   .+++||.+. -...++..|+..+.
T Consensus        75 --~-~~~~ll~~~~--~---~v~viG~~~-~~~~l~~~G~~~vv  109 (321)
T TIGR01456        75 --S-PYKSLVNKYE--K---RILAVGTGS-VRGVAEGYGFQNVV  109 (321)
T ss_pred             --H-HHHHHHHHcC--C---ceEEEeChH-HHHHHHHcCCcccc
Confidence              1 2344455554  2   678898765 46677789987653

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=96.07  E-value=0.0092  Score=45.18  Aligned_cols=42  Identities=12%  Similarity=0.077  Sum_probs=37.1

Q ss_pred             CChHHHHHHHHHcCCCC---CCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          86 PAPDVFLVAAKRFDEKP---QPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~---~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                      .+...++.+++.+|  +   ++++++.|||+.+|+.+-+.+|...+.
T Consensus       187 sKg~al~~l~~~lg--i~~~~~~~viafGDs~NDi~Ml~~ag~gvAM  231 (271)
T PRK03669        187 GKDQAANWLIATYQ--QLSGTRPTTLGLGDGPNDAPLLDVMDYAVVV  231 (271)
T ss_pred             CHHHHHHHHHHHHH--hhcCCCceEEEEcCCHHHHHHHHhCCEEEEe
Confidence            34788999999999  8   999999999999999999999975443

>PLN02887 hydrolase family protein

Probab=96.07  E-value=0.0072  Score=50.68  Aligned_cols=58  Identities=14%  Similarity=0.192  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      +..+++.+++.+|  +++++++.|||+.||+.+-+.+|.. +.+..+  .......++++..+
T Consensus       508 KG~ALk~L~e~lG--I~~eeviAFGDs~NDIeMLe~AG~g-VAMgNA--~eeVK~~Ad~VT~s  565 (580)
T PLN02887        508 KGNGVKMLLNHLG--VSPDEIMAIGDGENDIEMLQLASLG-VALSNG--AEKTKAVADVIGVS  565 (580)
T ss_pred             HHHHHHHHHHHcC--CCHHHEEEEecchhhHHHHHHCCCE-EEeCCC--CHHHHHhCCEEeCC
Confidence            3678889999999  9999999999999999999999985 444443  22333445555433

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.95  E-value=0.065  Score=43.68  Aligned_cols=94  Identities=12%  Similarity=0.051  Sum_probs=72.1

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-CccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..+|..+..++..|++.|+-++|.|-+....+...+.++      -|.++..+... ......|+.+-.+.++++++  +
T Consensus       254 G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh------p~MiLkeedfa~~~iNW~~K~eNirkIAkklN--l  325 (574)
T COG3882         254 GEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH------PDMILKEEDFAVFQINWDPKAENIRKIAKKLN--L  325 (574)
T ss_pred             chhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC------CCeEeeHhhhhhheecCCcchhhHHHHHHHhC--C
Confidence            367777888999999999999999988877776666543      12233222000 11235788999999999999  8


Q ss_pred             CCCceEEEecCHhHHHHHHHcCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGM  125 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~  125 (166)
                      ..+..+||+|++-..+-.++.+-
T Consensus       326 g~dSmvFiDD~p~ErE~vk~~~~  348 (574)
T COG3882         326 GLDSMVFIDDNPAERELVKRELP  348 (574)
T ss_pred             CccceEEecCCHHHHHHHHhcCc
Confidence            99999999999999999988875

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=95.77  E-value=0.018  Score=42.50  Aligned_cols=41  Identities=7%  Similarity=0.092  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      ....+.+++.++...++.++++|||+.+|+.+.+.+|+..+
T Consensus       183 ~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~  223 (225)
T TIGR02461       183 GKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL  223 (225)
T ss_pred             HHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence            55666777777622477799999999999999999998654

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>PLN02382 probable sucrose-phosphatase

Probab=95.54  E-value=0.029  Score=45.22  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=39.9

Q ss_pred             ChHHHHHHHHHc---CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          87 APDVFLVAAKRF---DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        87 ~~~~~~~~~~~~---~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +...++.+++++   +  +++++++.+||+.||+..-+.+|...+.+...
T Consensus       176 Kg~Al~~L~~~~~~~g--i~~~~~iafGDs~NDleMl~~ag~~gvam~NA  223 (413)
T PLN02382        176 KGQALAYLLKKLKAEG--KAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA  223 (413)
T ss_pred             HHHHHHHHHHHhhhcC--CChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence            478899999999   8  89999999999999999999999777777554

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=95.31  E-value=0.096  Score=39.01  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=54.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH---hhhcCcccccc-eEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT---SRHKDTLKLFH-HVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l---~~~~gl~~~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ...+.||+.+|+++.-++|..|+.+||...+.-....   +...|+....+ .++--.      ..|++..-...+.+  
T Consensus       120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk------~~k~Ke~R~~~v~k--  191 (274)
T COG2503         120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKK------DKKSKEVRRQAVEK--  191 (274)
T ss_pred             ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEee------CCCcHHHHHHHHhh--
Confidence            3678999999999999999999999999866511111   12245544332 111111      13444444444444  


Q ss_pred             CCCCCCCceEEEecCHhHHHHHH
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAK  121 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~  121 (166)
                          +..-+++|||+..|.....
T Consensus       192 ----~~~iVm~vGDNl~DF~d~~  210 (274)
T COG2503         192 ----DYKIVMLVGDNLDDFGDNA  210 (274)
T ss_pred             ----ccceeeEecCchhhhcchh
Confidence                2456888999998875443

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=95.25  E-value=0.089  Score=43.35  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=64.7

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      ...||.+|-+.+|++-|++.+.+|+..+-.+..-..+ -|++++.            ..++  |+--....++.+  ...
T Consensus       447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~E-AGVDdfi------------Aeat--PEdK~~~I~~eQ--~~g  509 (681)
T COG2216         447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDDFI------------AEAT--PEDKLALIRQEQ--AEG  509 (681)
T ss_pred             hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH-hCchhhh------------hcCC--hHHHHHHHHHHH--hcC
Confidence            5689999999999999999999999987666444444 4887754            1123  444455566666  567


Q ss_pred             CceEEEecCHhHHHHHHHcCCeEE
Q psy6288         105 SKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus       105 ~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      .=+.|.||+-+|..+-.++.+...
T Consensus       510 rlVAMtGDGTNDAPALAqAdVg~A  533 (681)
T COG2216         510 RLVAMTGDGTNDAPALAQADVGVA  533 (681)
T ss_pred             cEEEEcCCCCCcchhhhhcchhhh
Confidence            779999999999888777765543

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=95.11  E-value=0.052  Score=41.10  Aligned_cols=54  Identities=24%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF   69 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f   69 (166)
                      .|+++.+-.  ..+.+.+.++|++|++.|++++++|+.+...+...+ +.+|+..++
T Consensus         9 ~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~~   64 (273)
T PRK00192          9 TDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDPF   64 (273)
T ss_pred             EcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCE
Confidence            456665553  457788999999999999999999999988775555 446876554

>KOG0206|consensus

Probab=94.87  E-value=0.15  Score=45.95  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES   54 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~   54 (166)
                      +.++.+|+.+.|+.|+++|++++++|+.-.+.
T Consensus       649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ET  680 (1151)
T KOG0206|consen  649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQET  680 (1151)
T ss_pred             echhccCchHHHHHHHHcCCEEEEEcCcHHHH
Confidence            67899999999999999999999999986554

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=94.46  E-value=0.061  Score=40.28  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=36.8

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +....+.++++++  +++++++.+|||-+|+..- ..+...|.|...
T Consensus       166 K~~Al~~L~~~~~--~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na  209 (247)
T PF05116_consen  166 KGAALRYLMERWG--IPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA  209 (247)
T ss_dssp             HHHHHHHHHHHHT----GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred             HHHHHHHHHHHhC--CCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence            4788999999999  9999999999999999888 778889988765

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=94.37  E-value=0.1  Score=38.54  Aligned_cols=52  Identities=19%  Similarity=0.175  Sum_probs=38.9

Q ss_pred             hhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          15 FDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        15 ~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      .|+++.+.. ....+...++|++|+++|++++++|+.+...+...+ +.+|+..
T Consensus         4 ~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~   56 (225)
T TIGR02461         4 TDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP   56 (225)
T ss_pred             EeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence            355664432 346678999999999999999999999988775544 4467754

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>KOG0210|consensus

Probab=94.35  E-value=0.2  Score=42.88  Aligned_cols=129  Identities=16%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc---cccc-------------------------ceEEe
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT---LKLF-------------------------HHVVL   74 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl---~~~f-------------------------d~v~~   74 (166)
                      +.++.++++..|+.|+.+|++++.+|+...+.+..-.... ++   ..+.                         .-++.
T Consensus       656 EDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs-~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~  734 (1051)
T KOG0210|consen  656 EDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSS-RLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVID  734 (1051)
T ss_pred             HHHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhc-cceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEc
Confidence            4678899999999999999999999998654432111110 11   0111                         11111


Q ss_pred             cCCC------------------CCc--cCCCCC-hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          75 GSAD------------------PEV--KQGKPA-PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        75 ~~~~------------------~~~--~~~Kp~-~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +++=                  +.+  -.+.|. .+-.-+.+++..    ..++..|||+=+|+...+.+.+..-.++..
T Consensus       735 G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t----~krvc~IGDGGNDVsMIq~A~~GiGI~gkE  810 (1051)
T KOG0210|consen  735 GESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKT----GKRVCAIGDGGNDVSMIQAADVGIGIVGKE  810 (1051)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhh----CceEEEEcCCCccchheeecccceeeeccc
Confidence            1100                  000  012222 222334444444    478888999999999988876654444333


Q ss_pred             CCCcccccccchhhCChhhhhhhhc
Q psy6288         134 TVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +  .+..-.+|+-|..|..+..+|+
T Consensus       811 G--kQASLAADfSItqF~Hv~rLLl  833 (1051)
T KOG0210|consen  811 G--KQASLAADFSITQFSHVSRLLL  833 (1051)
T ss_pred             c--cccchhccccHHHHHHHHHHhh
Confidence            2  2334567888888888777665

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=94.33  E-value=0.14  Score=38.97  Aligned_cols=50  Identities=8%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS   76 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~   76 (166)
                      ..|.+.+.|.+|++.|..+++=|-+..+++...+.+ +++..+||.++++.
T Consensus       143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~-~~L~~~Fd~ii~~G  192 (297)
T PF05152_consen  143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE-LKLEGYFDIIICGG  192 (297)
T ss_pred             CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH-hCCccccEEEEeCC
Confidence            579999999999999999999999999999777755 69999999998875

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=94.30  E-value=0.16  Score=38.24  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~   75 (166)
                      .|+++.+-.  ..+-+...++|++|+++|++++++|+.+...+...+ +.+++....+.++++
T Consensus         8 ~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~~~~~I~~   69 (270)
T PRK10513          8 IDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHMEQPGDYCITN   69 (270)
T ss_pred             EecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCCCCCCeEEEc
Confidence            456665542  457788999999999999999999999988775555 445765432334433

>KOG2469|consensus

Probab=94.30  E-value=0.13  Score=40.97  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc--CcccccceEEecCCCC---------------------------Ccc
Q psy6288          32 RLINHLHKHNIPFAIATSSAKESFELKTSRHK--DTLKLFHHVVLGSADP---------------------------EVK   82 (166)
Q Consensus        32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~--gl~~~fd~v~~~~~~~---------------------------~~~   82 (166)
                      .+|..+++.|.+..++||+...-...-...++  +...|||.++.....+                           ...
T Consensus       205 ~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~  284 (424)
T KOG2469|consen  205 PLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQ  284 (424)
T ss_pred             cchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchh
Confidence            38999999999999999886554333333333  4667888765542000                           112


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHH-cCCeEEEecCCC
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKA-AGMSCVMVPDPT  134 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~-~G~~~i~v~~~~  134 (166)
                      .+.+.......+...++  .....++++||.. .|+.-..+ -|+.+++|....
T Consensus       285 ~~~ySggs~~~~~~~l~--~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL  336 (424)
T KOG2469|consen  285 GGVYSGGSLKTVETSMK--VKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPEL  336 (424)
T ss_pred             cccCCcchHHHHHHHhc--ccccceeecccceeeeEEecceecceEEEEEehhh
Confidence            23345577888888899  8889999999988 66655544 688888887653

>PLN02580 trehalose-phosphatase

Probab=94.26  E-value=0.068  Score=42.63  Aligned_cols=71  Identities=13%  Similarity=0.060  Sum_probs=51.2

Q ss_pred             ChHHHHHHHHHcCCCCCCCc---eEEEecCHhHHHHHHHc-----CCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288          87 APDVFLVAAKRFDEKPQPSK---CLVFEDAPNGVLGAKAA-----GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~---~i~IGD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +....+.+++.++  ++..+   .++|||..+|..+.+..     | ..|.|..+.    ....+.+.+.+..++..+|.
T Consensus       302 KG~Av~~Ll~~~g--~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G-~~I~Vgn~~----~~t~A~y~L~dp~eV~~~L~  374 (384)
T PLN02580        302 KGKAVEFLLESLG--LSNCDDVLPIYIGDDRTDEDAFKVLREGNRG-YGILVSSVP----KESNAFYSLRDPSEVMEFLK  374 (384)
T ss_pred             HHHHHHHHHHhcC--CCcccceeEEEECCCchHHHHHHhhhccCCc-eEEEEecCC----CCccceEEcCCHHHHHHHHH
Confidence            3567788888888  66553   38999999999999863     4 345555431    12356788999999999988


Q ss_pred             CCCCCC
Q psy6288         159 GLPPFE  164 (166)
Q Consensus       159 ~~~~~~  164 (166)
                      .+..|+
T Consensus       375 ~L~~~~  380 (384)
T PLN02580        375 SLVTWK  380 (384)
T ss_pred             HHHHhh
Confidence            776654

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=93.53  E-value=0.15  Score=37.03  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=39.5

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      .|+++.+.  +..+.|...+.|++|++.|++++++|+.+...+...+ +.+++..
T Consensus         6 ~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~~   59 (215)
T TIGR01487         6 IDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTSG   59 (215)
T ss_pred             EecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCCC
Confidence            35666544  2457899999999999999999999999988775544 4456653

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>COG4030 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.48  E-value=0.72  Score=34.27  Aligned_cols=40  Identities=15%  Similarity=0.141  Sum_probs=29.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT   65 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl   65 (166)
                      .++.||+.+.++.|++. .+-+|+|.+....+ ..+....|+
T Consensus        82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~-~r~a~~ig~  121 (315)
T COG4030          82 AKLVPGAEETMATLQER-WTPVVISTSYTQYL-RRTASMIGV  121 (315)
T ss_pred             cccCCChHHHHHHHhcc-CCceEEeccHHHHH-HHHHHhcCC
Confidence            68899999999999986 77778887775554 333344454

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=93.34  E-value=0.19  Score=36.58  Aligned_cols=50  Identities=24%  Similarity=0.277  Sum_probs=36.9

Q ss_pred             hhhhhhcCC-c-cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          16 DMDGLLLGY-N-LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        16 ~~~~~~~~~-~-~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      |+++.+-.. . ..+...++|+.|+++|++++++||.+...+...+ +.+++.
T Consensus         5 DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~   56 (221)
T TIGR02463         5 DLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT   56 (221)
T ss_pred             eCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence            456644432 2 4455889999999999999999999988775554 546775

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=93.12  E-value=0.12  Score=44.68  Aligned_cols=62  Identities=18%  Similarity=-0.021  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC--eEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288          89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM--SCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~--~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ...+.+++  +  .+++.++++||+.+|..+.+.++.  .++.++.+      ...+++++++..++...|..+
T Consensus       660 ~al~~ll~--~--~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~------~s~A~~~l~~~~eV~~~L~~l  723 (726)
T PRK14501        660 RAVRRLLE--A--GPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG------ESRARYRLPSQREVRELLRRL  723 (726)
T ss_pred             HHHHHHHh--c--CCCCEEEEECCCCChHHHHHhcccCceEEEECCC------CCcceEeCCCHHHHHHHHHHH
Confidence            34444444  4  678899999999999999998753  44555432      345678888888877776554

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=93.03  E-value=1.2  Score=31.03  Aligned_cols=106  Identities=16%  Similarity=0.131  Sum_probs=59.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh---c---Ccccccc-eEEecCCCC------CccCCCCC---
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH---K---DTLKLFH-HVVLGSADP------EVKQGKPA---   87 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~---~---gl~~~fd-~v~~~~~~~------~~~~~Kp~---   87 (166)
                      ...++|+.++.+.++++||++.-+|+.+.... ......   .   |. .+.+ .++.+..+-      ++-..+|.   
T Consensus        26 d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa-~~Tr~~L~~~~q~~~-~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK  103 (157)
T PF08235_consen   26 DWTHPGAAELYRKIADNGYKILYLTARPIGQA-NRTRSWLAQHQQQGH-NLPDGPVLLSPDSLFSALHREVISKDPEEFK  103 (157)
T ss_pred             hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHH-HHHHHHHHHHHhCCc-cCCCCCEEECCcchhhhhhccccccChHHHH
Confidence            36789999999999999999999999974332 222221   1   11 1112 233331000      12222332   


Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe--EEEecC
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS--CVMVPD  132 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~--~i~v~~  132 (166)
                      ...+..+...+.. ....=..-+|++.+|+.+-+++|++  -|++..
T Consensus       104 ~~~L~~l~~~f~~-~~~pf~agfGN~~tDv~aY~~vGip~~rIF~I~  149 (157)
T PF08235_consen  104 IACLRDLRALFPP-DGNPFYAGFGNRSTDVIAYKAVGIPKSRIFIIN  149 (157)
T ss_pred             HHHHHHHHHhcCC-CCCeEEEecCCcHHHHHHHHHcCCChhhEEEEC
Confidence            2333344444430 1122233489999999999999995  444433

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>KOG4549|consensus

Probab=92.95  E-value=0.73  Score=30.93  Aligned_cols=84  Identities=12%  Similarity=0.087  Sum_probs=59.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc---------cccceEEecCCCCCccCCCCChHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL---------KLFHHVVLGSADPEVKQGKPAPDVFL   92 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~---------~~fd~v~~~~~~~~~~~~Kp~~~~~~   92 (166)
                      .....|+++...|..|++.|+.++++|++.........++.+.+.         ..|+.+.-++        .-+...+.
T Consensus        41 ~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~--------gsklghfk  112 (144)
T KOG4549|consen   41 EEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGD--------GSKLGHFK  112 (144)
T ss_pred             ceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecC--------cccchhHH
Confidence            346789999999999999999999999998777766666655432         2344444444        11245667


Q ss_pred             HHHHHcCCCCCCCceEEEecCHh
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPN  115 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~  115 (166)
                      .+-+..+  ....+..+..|-.+
T Consensus       113 e~~n~s~--~~~k~~~~fdDesr  133 (144)
T KOG4549|consen  113 EFTNNSN--SIEKNKQVFDDESR  133 (144)
T ss_pred             HHhhccC--cchhceeeeccccc
Confidence            7777777  67777777777654

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=92.87  E-value=0.27  Score=36.81  Aligned_cols=50  Identities=24%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             hhhhhhcCC-c-cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          16 DMDGLLLGY-N-LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        16 ~~~~~~~~~-~-~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      |+++.+... . ..+...++|+.|+++|++++++|+.+...+...+ +.+|+.
T Consensus         5 DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~   56 (256)
T TIGR01486         5 DLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE   56 (256)
T ss_pred             cCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence            455544432 2 4567899999999999999999999988775555 445764

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=92.82  E-value=0.25  Score=37.26  Aligned_cols=53  Identities=25%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL   68 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~   68 (166)
                      .|+++.+-  +..+-+...++|++|+++|++++++|+.+...+...+ +.+++..+
T Consensus         7 ~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~   61 (272)
T PRK15126          7 FDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDAY   61 (272)
T ss_pred             EeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCc
Confidence            45666554  2457889999999999999999999999988775555 44577543

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=92.80  E-value=0.24  Score=38.15  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=40.6

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF   69 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f   69 (166)
                      .|+++.+-+  ....+-+.++|++|+++|+++++.|+.....+.... +.+++..+|
T Consensus         6 tDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~p~   61 (302)
T PRK12702          6 SSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEHPF   61 (302)
T ss_pred             EeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCCeE
Confidence            356664442  446788999999999999999999999988875554 446776543

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=92.77  E-value=0.28  Score=36.61  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=38.0

Q ss_pred             hhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          16 DMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        16 ~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      |+++.+..  ..+-+...++|++|+++|++++++|+.+...+...+.+ +++.
T Consensus         5 DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~-~~~~   56 (256)
T TIGR00099         5 DLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKE-LGLD   56 (256)
T ss_pred             eCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCCC
Confidence            55664442  35678999999999999999999999998877555543 5664

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=92.65  E-value=0.81  Score=33.13  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=54.8

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc--c--ceEEecC-------CCCCccCCCCChHHHHH
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL--F--HHVVLGS-------ADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~--f--d~v~~~~-------~~~~~~~~Kp~~~~~~~   93 (166)
                      ..+|++.+||+.+.+ .|.++|.|.+...-+...+.. +++...  +  ..+....       ........|+    +..
T Consensus        45 ~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~-l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~  118 (195)
T TIGR02245        45 LMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTE-LGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV  118 (195)
T ss_pred             EeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHH-hcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence            468999999999999 599999999987766555543 343210  1  1111110       0000001232    223


Q ss_pred             HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      +-.+++...+.+++++|.|++.-...--..|+.
T Consensus       119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~  151 (195)
T TIGR02245       119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLK  151 (195)
T ss_pred             hhhhcccCCCcccEEEEeCCHHHHhcCCCCccc
Confidence            333554113779999999999654433334443

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>PRK10976 putative hydrolase; Provisional

Probab=92.38  E-value=0.31  Score=36.54  Aligned_cols=52  Identities=23%  Similarity=0.220  Sum_probs=39.4

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      .|+++.+-.  ..+-+...++|++|+++|++++++|+.+...+...+ +.+++..
T Consensus         7 ~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   60 (266)
T PRK10976          7 SDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIKS   60 (266)
T ss_pred             EeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence            356664442  357788999999999999999999999988775544 4467654

>COG0731 Fe-S oxidoreductases [Energy production and conversion]

Probab=92.29  E-value=0.73  Score=35.51  Aligned_cols=36  Identities=14%  Similarity=0.028  Sum_probs=31.1

Q ss_pred             CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELK   58 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~   58 (166)
                      +..++|.+-++++.+++.| ++++++||++.+.+...
T Consensus        90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~  126 (296)
T COG0731          90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEE  126 (296)
T ss_pred             CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHH
Confidence            6789999999999999999 79999999998644333

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=92.20  E-value=0.28  Score=43.27  Aligned_cols=67  Identities=15%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             hHHHHHHHH---HcCCCCCCCceEEEecCHhHHHHHHHcCC-------------eEEEecCCCCCcccccccchhhCChh
Q psy6288          88 PDVFLVAAK---RFDEKPQPSKCLVFEDAPNGVLGAKAAGM-------------SCVMVPDPTVPKHRTEAADLVLNSLE  151 (166)
Q Consensus        88 ~~~~~~~~~---~~~~~~~~~~~i~IGD~~~Di~~a~~~G~-------------~~i~v~~~~~~~~~~~~~~~~~~~~~  151 (166)
                      ....+.+++   .++  .+++.+++|||..+|..+-+.++-             -+|.|..+      ...+.+.+++..
T Consensus       764 G~Al~~Ll~~~~~~g--~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~------~S~A~y~L~d~~  835 (854)
T PLN02205        764 GLVAKRLLSIMQERG--MLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQK------PSKAKYYLDDTA  835 (854)
T ss_pred             HHHHHHHHHHHHhcC--CCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECCC------CccCeEecCCHH
Confidence            344455543   357  789999999999999999888762             34445332      345567888888


Q ss_pred             hhhhhhcCCCC
Q psy6288         152 EFKPELYGLPP  162 (166)
Q Consensus       152 ~l~~~l~~~~~  162 (166)
                      ++..+|.++..
T Consensus       836 eV~~lL~~L~~  846 (854)
T PLN02205        836 EIVRLMQGLAS  846 (854)
T ss_pred             HHHHHHHHHHh
Confidence            88888776543

>KOG3107|consensus

Probab=92.15  E-value=0.62  Score=37.00  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             EEEEeCCc-hhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHH
Q psy6288          44 FAIATSSA-KESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA  120 (166)
Q Consensus        44 i~ivS~~~-~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a  120 (166)
                      -++||+.- .+.+.+.++  +||...|  +.|.++.     ..+|  ..-|++|++++|  . .-.-++|||+...-.+|
T Consensus       373 nVlvTttqLipalaKvLL--~gLg~~fpiENIYSa~-----kiGK--escFerI~~RFg--~-K~~yvvIgdG~eee~aA  440 (468)
T KOG3107|consen  373 NVLVTTTQLIPALAKVLL--YGLGSSFPIENIYSAT-----KIGK--ESCFERIQSRFG--R-KVVYVVIGDGVEEEQAA  440 (468)
T ss_pred             EEEEeccchhHHHHHHHH--HhcCCcccchhhhhhh-----hccH--HHHHHHHHHHhC--C-ceEEEEecCcHHHHHHH
Confidence            45566554 333434444  3665554  4555544     2333  788999999999  4 67778899999999999


Q ss_pred             HHcCCeEEEecCC
Q psy6288         121 KAAGMSCVMVPDP  133 (166)
Q Consensus       121 ~~~G~~~i~v~~~  133 (166)
                      ++..|+..-+...
T Consensus       441 K~ln~PfwrI~~h  453 (468)
T KOG3107|consen  441 KALNMPFWRISSH  453 (468)
T ss_pred             HhhCCceEeeccC
Confidence            9999998887544

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=92.13  E-value=0.36  Score=35.24  Aligned_cols=50  Identities=22%  Similarity=0.291  Sum_probs=38.4

Q ss_pred             hhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          16 DMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        16 ~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      |+++.+.  ...+-|...++|+.|+++|+++++.|+.+...+...+. .+++.
T Consensus         4 DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~-~~~~~   55 (254)
T PF08282_consen    4 DLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLK-ELGID   55 (254)
T ss_dssp             ECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH-HTTHC
T ss_pred             EECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccc-cccch
Confidence            4555442  34577999999999999999999999999887755544 45665

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=91.85  E-value=0.36  Score=36.19  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=39.6

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      .|+++.+-.  ..+.|...++|++|+++|++++++|+.+...+...+ +.+++..
T Consensus         8 ~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   61 (272)
T PRK10530          8 LDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALDT   61 (272)
T ss_pred             EeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence            456665543  357888999999999999999999999988775554 4456653

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=91.39  E-value=0.45  Score=34.61  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      .|+++.+..  ..+.+...++|++|++.|++++++|+.+...+...+ +.+++.
T Consensus         3 ~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~   55 (225)
T TIGR01482         3 SDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP   55 (225)
T ss_pred             EeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence            355665442  346788899999999999999999999988775544 445643

catalyze the same reaction as SPP.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=91.29  E-value=0.46  Score=34.06  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             hhhhhhcC---CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh
Q psy6288          16 DMDGLLLG---YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTS   60 (166)
Q Consensus        16 ~~~~~~~~---~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~   60 (166)
                      |+++.+..   ..+-+.+.++|++|++.|.+++++|+.+...+...+.
T Consensus         5 D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~   52 (204)
T TIGR01484         5 DLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLK   52 (204)
T ss_pred             eCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence            45554442   3577999999999999999999999999887755543

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=91.09  E-value=3  Score=31.50  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHcCCCCCCCceEEE------ecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCC
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVF------EDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~I------GD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                      .+.-..++++++  ++   +++-      |-...=+.+|++.|++.+.|.++.     ...+..+++++.++..++.+..
T Consensus       186 ~e~n~al~~~~~--i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~-----~~~~~~~~~~~~el~~~l~~~~  255 (256)
T TIGR00715       186 EELEKALLREYR--ID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQ-----TIPGVAIFDDISQLNQFVARLL  255 (256)
T ss_pred             HHHHHHHHHHcC--CC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC-----CCCCCccCCCHHHHHHHHHHhc
Confidence            344566677777  22   2332      233566899999999999998883     2333467789999999887654

This enzyme was found to be a monomer by gel filtration.

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=1.5  Score=34.20  Aligned_cols=88  Identities=9%  Similarity=0.051  Sum_probs=58.6

Q ss_pred             CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHHHhhhcC---c----------ccccceEEecCCCCCccCCCCCh
Q psy6288          23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELKTSRHKD---T----------LKLFHHVVLGSADPEVKQGKPAP   88 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~l~~~~g---l----------~~~fd~v~~~~~~~~~~~~Kp~~   88 (166)
                      .-.++||+-.+.+.|.+.| .+++-+||++.... ..|.+.++   +          ...|+.++.+.       ..-+.
T Consensus       194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f-~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sg-------a~rK~  265 (373)
T COG4850         194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLF-PTLQEFITNRNFPYGPLLLRRWGGVLDNIIESG-------AARKG  265 (373)
T ss_pred             ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhH-HHHHHHHhcCCCCCCchhHhhcCCcccccccch-------hhhcc
Confidence            3578999999999999887 89999999986543 22222211   1          12345544443       12235


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHH
Q psy6288          89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKA  122 (166)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~  122 (166)
                      ..++.+++++.    ..+.+.|||+= .|.+.-.+
T Consensus       266 ~~l~nil~~~p----~~kfvLVGDsGE~DpeIYae  296 (373)
T COG4850         266 QSLRNILRRYP----DRKFVLVGDSGEHDPEIYAE  296 (373)
T ss_pred             cHHHHHHHhCC----CceEEEecCCCCcCHHHHHH
Confidence            66777888887    78899999965 77665433

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=90.83  E-value=1.7  Score=29.18  Aligned_cols=30  Identities=10%  Similarity=0.216  Sum_probs=26.4

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKES   54 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~   54 (166)
                      .+.+++.+.|++|++.|+.++++|+.+...
T Consensus        24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~   53 (126)
T TIGR01689        24 APILAVIEKLRHYKALGFEIVISSSRNMRT   53 (126)
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence            467899999999999999999999998654

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=90.41  E-value=0.92  Score=34.26  Aligned_cols=51  Identities=18%  Similarity=0.167  Sum_probs=38.2

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      .|+++.+-.  ..+.+...++|++|+++|+++++.|+.+...+...+.+ +|+.
T Consensus        12 ~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~-l~~~   64 (271)
T PRK03669         12 TDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQT-LGLQ   64 (271)
T ss_pred             EeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHH-hCCC
Confidence            456665443  23457788999999999999999999998877555544 5764

>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5

Probab=89.94  E-value=0.71  Score=33.97  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288          30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS   76 (166)
Q Consensus        30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~   76 (166)
                      +.++|..|++. +.++|||++..+.+..++.. ..+...||++++..
T Consensus         1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~-~~~~~~fdy~f~en   45 (220)
T PF03332_consen    1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGG-DDVLDNFDYVFPEN   45 (220)
T ss_dssp             HHHHHHHHHTT-SEEEEEESS-HHHHHHHHST-TTHHHH-SEEEEGG
T ss_pred             CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcc-cchHhhCCeeecCC
Confidence            46889999985 99999999999988777742 13556688887764

4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.

>KOG1618|consensus

Probab=89.88  E-value=1.1  Score=35.01  Aligned_cols=96  Identities=22%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             hhhhhh-cCCccchhHHHHHHHHHHC----CCCEEEEeCCchhhHH---HHHhhhcCcccccceEEecCCCCCccCCCCC
Q psy6288          16 DMDGLL-LGYNLAIGALRLINHLHKH----NIPFAIATSSAKESFE---LKTSRHKDTLKLFHHVVLGSADPEVKQGKPA   87 (166)
Q Consensus        16 ~~~~~~-~~~~~~~g~~~~l~~l~~~----g~~i~ivS~~~~~~~~---~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~   87 (166)
                      |+++.+ ....+.|++.++|+.|.++    .++.+++||+..-.-.   ..+.+.+|..---|.++-+.           
T Consensus        41 DIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSH-----------  109 (389)
T KOG1618|consen   41 DIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSH-----------  109 (389)
T ss_pred             ecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhc-----------
Confidence            344432 3467899999999999988    8899999998522211   23333333332222222222           


Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                       ..|+... ++    .-++++++|+... ...|+..|++.|.
T Consensus       110 -sP~r~l~-~~----~~k~vLv~G~~~v-r~vAegyGFk~Vv  144 (389)
T KOG1618|consen  110 -SPFRLLV-EY----HYKRVLVVGQGSV-REVAEGYGFKNVV  144 (389)
T ss_pred             -ChHHHHh-hh----hhceEEEecCCcH-HHHhhccCcccee
Confidence             1133333 33    3688999997653 6788999998664

>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=89.50  E-value=1.4  Score=31.13  Aligned_cols=92  Identities=10%  Similarity=-0.013  Sum_probs=51.6

Q ss_pred             cchhHHHHHHHHH---HCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          26 LAIGALRLINHLH---KHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        26 ~~~g~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      +.....|.|+.|+   +.+-++++++......-...+.+.+|+.-.  . +...          ++.-++..++++.   
T Consensus        59 I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~--~-~~~~----------~~~e~~~~i~~~~---  122 (176)
T PF06506_consen   59 IPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIK--I-YPYD----------SEEEIEAAIKQAK---  122 (176)
T ss_dssp             E---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEE--E-EEES----------SHHHHHHHHHHHH---
T ss_pred             ECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceE--E-EEEC----------CHHHHHHHHHHHH---
Confidence            3445555555554   457789999876544333455555555221  1 1111          1444566666654   


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ...--++||++.. ...|++.|++++++..+.
T Consensus       123 ~~G~~viVGg~~~-~~~A~~~gl~~v~i~sg~  153 (176)
T PF06506_consen  123 AEGVDVIVGGGVV-CRLARKLGLPGVLIESGE  153 (176)
T ss_dssp             HTT--EEEESHHH-HHHHHHTTSEEEESS--H
T ss_pred             HcCCcEEECCHHH-HHHHHHcCCcEEEEEecH
Confidence            2335678999875 789999999999997763

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.

>KOG2134|consensus

Probab=89.34  E-value=1.6  Score=34.88  Aligned_cols=102  Identities=14%  Similarity=0.042  Sum_probs=66.6

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhh--------HHHHHhhhc-CcccccceEEecCCCCCccCCCCChHHHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKES--------FELKTSRHK-DTLKLFHHVVLGSADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--------~~~~l~~~~-gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~   94 (166)
                      ..+++.+..=|+.|.+.|+.++|.||.....        ...++.... .+.-.|......-   ....+||...|++..
T Consensus       103 ~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~---~~~yRKP~tGMwe~~  179 (422)
T KOG2134|consen  103 RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVPIQLLAAII---KGKYRKPSTGMWEFL  179 (422)
T ss_pred             eeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCceEEeeecc---CCcccCcchhHHHHH
Confidence            3467888888999999999999999885322        222222211 1222333333333   457899999999999


Q ss_pred             HHHcCCC--CCCCceEEEec---------------CHhHHHHHHHcCCeEE
Q psy6288          95 AKRFDEK--PQPSKCLVFED---------------APNGVLGAKAAGMSCV  128 (166)
Q Consensus        95 ~~~~~~~--~~~~~~i~IGD---------------~~~Di~~a~~~G~~~i  128 (166)
                      .+.++..  +.-..++|+||               +..|+..|.++|+...
T Consensus       180 ~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~  230 (422)
T KOG2134|consen  180 KRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK  230 (422)
T ss_pred             HHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence            9887732  33444557776               3368999999997643

>KOG0209|consensus

Probab=89.01  E-value=1.7  Score=38.28  Aligned_cols=109  Identities=16%  Similarity=0.085  Sum_probs=68.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC------------CC-Cc---cCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA------------DP-EV---KQGKP   86 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~------------~~-~~---~~~Kp   86 (166)
                      ++++.|+++..|+.|.+++.+++.+|+...-.++....+ .|+..--..+..-..            |+ ..   ...++
T Consensus       673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~-v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~  751 (1160)
T KOG0209|consen  673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKE-VGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKK  751 (1160)
T ss_pred             eCCCCccHHHHHHHHhccCceEEEEeCCCccchheehhe-eeeeccCceeeccCccCCCceeeEecCCCceeecCCCCcc
Confidence            689999999999999999999999999986655444333 354321001100000            00 00   11111


Q ss_pred             Ch---------------------------------------HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE
Q psy6288          87 AP---------------------------------------DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC  127 (166)
Q Consensus        87 ~~---------------------------------------~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~  127 (166)
                      +.                                       .--+.++..+.  --...++|.||+-+|+-+-+.+.+..
T Consensus       752 ~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK--~~Gy~TLMCGDGTNDVGALK~AhVGV  829 (1160)
T KOG0209|consen  752 KTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLK--KLGYVTLMCGDGTNDVGALKQAHVGV  829 (1160)
T ss_pred             chhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHH--hcCeEEEEecCCCcchhhhhhcccce
Confidence            11                                       11122334444  34567999999999999999999988


Q ss_pred             EEecCCC
Q psy6288         128 VMVPDPT  134 (166)
Q Consensus       128 i~v~~~~  134 (166)
                      .+...+.
T Consensus       830 ALL~~~~  836 (1160)
T KOG0209|consen  830 ALLNNPE  836 (1160)
T ss_pred             ehhcCCh
Confidence            8887665

>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=88.90  E-value=6.9  Score=29.28  Aligned_cols=84  Identities=21%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             HCCCCEEEEeCCch---hhHHHHHhhhc-CcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH
Q psy6288          39 KHNIPFAIATSSAK---ESFELKTSRHK-DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP  114 (166)
Q Consensus        39 ~~g~~i~ivS~~~~---~~~~~~l~~~~-gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~  114 (166)
                      +.++.+.++|++..   +.+.......+ .+..-| .|+.|.     +..-|.|...+.+++.-+  +   .|++|||.+
T Consensus        29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf-~i~isP-----N~a~PGP~~ARE~l~~~~--i---P~IvI~D~p   97 (277)
T PRK00994         29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDF-VIVISP-----NPAAPGPKKAREILKAAG--I---PCIVIGDAP   97 (277)
T ss_pred             ccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCE-EEEECC-----CCCCCCchHHHHHHHhcC--C---CEEEEcCCC
Confidence            35899999998853   22322222211 233333 345544     346778888999999888  5   699999987


Q ss_pred             --hHHHHHHHcCCeEEEecCC
Q psy6288         115 --NGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       115 --~Di~~a~~~G~~~i~v~~~  133 (166)
                        .+...-.+.|+..|.+...
T Consensus        98 ~~K~~d~l~~~g~GYIivk~D  118 (277)
T PRK00994         98 GKKVKDAMEEQGLGYIIVKAD  118 (277)
T ss_pred             ccchHHHHHhcCCcEEEEecC
Confidence              6778888899998888654

>PRK13762 tRNA-modifying enzyme; Provisional

Probab=88.69  E-value=2.2  Score=33.35  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=28.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKES   54 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~   54 (166)
                      .+..++|.+.++++.+++.|+.+.+.||+....
T Consensus       139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e  171 (322)
T PRK13762        139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRPD  171 (322)
T ss_pred             ccccchhhHHHHHHHHHHcCCCEEEECCCCCHH
Confidence            456678999999999999999999999997653

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=88.65  E-value=4.9  Score=33.71  Aligned_cols=88  Identities=7%  Similarity=-0.047  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288          29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL  108 (166)
Q Consensus        29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i  108 (166)
                      ++...|..+++.+-++++++-.........+.+.+++.-  +.+....           .+-....++++.   ...--+
T Consensus        85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i--~~~~~~~-----------~~e~~~~~~~l~---~~G~~~  148 (526)
T TIGR02329        85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDI--VQRSYVT-----------EEDARSCVNDLR---ARGIGA  148 (526)
T ss_pred             hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEecC-----------HHHHHHHHHHHH---HCCCCE
Confidence            344455555666778999987654443345555444432  2211111           222344444443   233457


Q ss_pred             EEecCHhHHHHHHHcCCeEEEecCC
Q psy6288         109 VFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       109 ~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +|||+.. ...|++.|++++++..+
T Consensus       149 viG~~~~-~~~A~~~gl~~ili~s~  172 (526)
T TIGR02329       149 VVGAGLI-TDLAEQAGLHGVFLYSA  172 (526)
T ss_pred             EECChHH-HHHHHHcCCceEEEecH
Confidence            7899976 78899999999999775

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PTZ00174 phosphomannomutase; Provisional

Probab=87.92  E-value=1.1  Score=33.39  Aligned_cols=45  Identities=16%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT   59 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l   59 (166)
                      .|+++.+-.  ..+-|...++|++++++|++++++|+.+...+...+
T Consensus        10 ~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l   56 (247)
T PTZ00174         10 FDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL   56 (247)
T ss_pred             EECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence            456665442  457788999999999999999999999887665444

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=87.80  E-value=1.3  Score=38.18  Aligned_cols=42  Identities=10%  Similarity=0.063  Sum_probs=36.5

Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEE--ecCHhHHHHHHHcCCeEEE
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVF--EDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~I--GD~~~Di~~a~~~G~~~i~  129 (166)
                      .+...++.+++.++  ++.++++.|  ||+.+|+..-+.+|...+.
T Consensus       613 dKG~AL~~L~e~~g--I~~~eViafalGDs~NDisMLe~Ag~gVAM  656 (694)
T PRK14502        613 DKGKAIKILNELFR--LNFGNIHTFGLGDSENDYSMLETVDSPILV  656 (694)
T ss_pred             CHHHHHHHHHHHhC--CCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence            34788899999999  888888888  9999999999999996554

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=87.50  E-value=2.1  Score=30.34  Aligned_cols=39  Identities=8%  Similarity=0.093  Sum_probs=29.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR   61 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~   61 (166)
                      +..+++.+.++++.+++.|+.+.+.||+........+.+
T Consensus        72 EPll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~  110 (191)
T TIGR02495        72 EPTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLE  110 (191)
T ss_pred             cccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHh
Confidence            456678899999999999999999999975433333333

This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=87.38  E-value=11  Score=28.54  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=56.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEE-EEeCCchh-hHHHHHhhhcCcccccceEEecCCCCCccCC-CCCh---HHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFA-IATSSAKE-SFELKTSRHKDTLKLFHHVVLGSADPEVKQG-KPAP---DVFLVAAK   96 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~-ivS~~~~~-~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~-Kp~~---~~~~~~~~   96 (166)
                      ...+.+...++++.+++.|+..+ +++..+.. .+ ..+.+   ..+=|-++++..  +..+.. .-.+   +.++.+.+
T Consensus       122 pDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri-~~i~~---~~~gfiy~vs~~--G~TG~~~~~~~~~~~~i~~lr~  195 (256)
T TIGR00262       122 ADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERL-KQIAE---KSQGFVYLVSRA--GVTGARNRAASALNELVKRLKA  195 (256)
T ss_pred             CCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHH-HHHHH---hCCCCEEEEECC--CCCCCcccCChhHHHHHHHHHh
Confidence            45566788899999999998855 66665533 23 23322   223244555543  012221 1122   22333333


Q ss_pred             HcCCCCCCCceEEEecCH---hHHHHHHHcCCeEEEecCCC
Q psy6288          97 RFDEKPQPSKCLVFEDAP---NGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~---~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ..+  .    -+++|=+.   .++..+.+.|...+.|.+..
T Consensus       196 ~~~--~----pi~vgfGI~~~e~~~~~~~~GADgvVvGSai  230 (256)
T TIGR00262       196 YSA--K----PVLVGFGISKPEQVKQAIDAGADGVIVGSAI  230 (256)
T ss_pred             hcC--C----CEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence            222  2    37778755   58888888999998887653

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PLN02151 trehalose-phosphatase

Probab=87.38  E-value=0.7  Score=36.57  Aligned_cols=71  Identities=11%  Similarity=0.008  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHcCCCCCCC---ceEEEecCHhHHHHHHHcC----CeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288          88 PDVFLVAAKRFDEKPQPS---KCLVFEDAPNGVLGAKAAG----MSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~---~~i~IGD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      -...+.+++.++  ....   -.+||||..+|-.+.+...    --.|.|..+.    ....+.+.+.+..++..+|.++
T Consensus       271 G~Av~~Ll~~~~--~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg~~~----k~T~A~y~L~dp~eV~~~L~~L  344 (354)
T PLN02151        271 GKALEFLLESLG--YANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKYA----KETNASYSLQEPDEVMEFLERL  344 (354)
T ss_pred             HHHHHHHHHhcc--cccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEeccCC----CCCcceEeCCCHHHHHHHHHHH
Confidence            344555565555  3322   3799999999887776542    1245554321    2246678899999999888777


Q ss_pred             CCCC
Q psy6288         161 PPFE  164 (166)
Q Consensus       161 ~~~~  164 (166)
                      ..|+
T Consensus       345 ~~~~  348 (354)
T PLN02151        345 VEWK  348 (354)
T ss_pred             HHhh
Confidence            6554

>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=86.31  E-value=2.7  Score=28.96  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=32.7

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS   76 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~   76 (166)
                      ...+.+.++++.+++.|+++.+.||...+.....+      ...+|.++.+.
T Consensus        72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~i------l~~iD~l~~g~  117 (147)
T TIGR02826        72 WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLEL------VQHLDYLKTGR  117 (147)
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH------HHhCCEEEECh
Confidence            34577999999999999999999997654332232      23456666665

Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.

>KOG1618|consensus

Probab=86.30  E-value=0.67  Score=36.08  Aligned_cols=56  Identities=23%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             ccCCCCChHHHHHHHH-------HcCCCCCCCceEEEecCH-hHHHHHH---------------HcCCeEEEecCCCCC
Q psy6288          81 VKQGKPAPDVFLVAAK-------RFDEKPQPSKCLVFEDAP-NGVLGAK---------------AAGMSCVMVPDPTVP  136 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~-------~~~~~~~~~~~i~IGD~~-~Di~~a~---------------~~G~~~i~v~~~~~~  136 (166)
                      ...+||.+-.|+.+..       +.+...++.+..||||++ +|+..|.               +.||.+|+|.+|..+
T Consensus       267 ~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~  345 (389)
T KOG1618|consen  267 TTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN  345 (389)
T ss_pred             cccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence            4668998766554322       222124678899999999 9999996               778999999987543

>PLN03017 trehalose-phosphatase

Probab=86.23  E-value=1.1  Score=35.72  Aligned_cols=71  Identities=11%  Similarity=-0.026  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHcCCCCC---CCceEEEecCHhHHHHHHHcC----CeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288          88 PDVFLVAAKRFDEKPQ---PSKCLVFEDAPNGVLGAKAAG----MSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~---~~~~i~IGD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      -...+.+++.++  ..   ..-.+||||..+|-.+.+...    .-.|.|+...    ....+.+.+.+..++.++|..+
T Consensus       285 G~Av~~LL~~l~--~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~~----k~T~A~y~L~dp~eV~~fL~~L  358 (366)
T PLN03017        285 GKALEFLLESLG--FGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKFP----KDTDASYSLQDPSEVMDFLARL  358 (366)
T ss_pred             HHHHHHHHHhcc--cccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCCC----CCCcceEeCCCHHHHHHHHHHH
Confidence            355666666666  33   235899999999988877652    3466665321    1245678888999999888877


Q ss_pred             CCCC
Q psy6288         161 PPFE  164 (166)
Q Consensus       161 ~~~~  164 (166)
                      ..|+
T Consensus       359 ~~~~  362 (366)
T PLN03017        359 VEWK  362 (366)
T ss_pred             HHHH
Confidence            6554

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=86.13  E-value=10  Score=28.58  Aligned_cols=120  Identities=15%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh-hcCcccccceEEecCCCCCccC----------CCC-ChHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR-HKDTLKLFHHVVLGSADPEVKQ----------GKP-APDVF   91 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~-~~gl~~~fd~v~~~~~~~~~~~----------~Kp-~~~~~   91 (166)
                      +....+..++.+.+.+.+..-+++|.+++...  .+.. ...-..+|-.+....   +...          .-| +.+.-
T Consensus       112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~--~f~~~~~~~~r~~~RvLp~~---~~~~g~~~~~iia~~GPfs~e~n  186 (249)
T PF02571_consen  112 WHYVDSYEEAAELLKELGGGRIFLTTGSKNLP--PFVPAPLPGERLFARVLPTP---ESALGFPPKNIIAMQGPFSKELN  186 (249)
T ss_pred             EEEeCCHHHHHHHHhhcCCCCEEEeCchhhHH--HHhhcccCCCEEEEEECCCc---cccCCCChhhEEEEeCCCCHHHH
Confidence            55678888999999888866666666664432  2211 112223333333332   1111          122 23455


Q ss_pred             HHHHHHcCCCCCCCceEEEecC-----HhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDA-----PNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~-----~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ...+++++  ++   +++-=||     ..=+.+|++.|++.+.+.++.     ...+..+++++.++..++.
T Consensus       187 ~al~~~~~--i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~-----~~~~~~~~~~~~e~l~~l~  248 (249)
T PF02571_consen  187 RALFRQYG--ID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPP-----EPYGDPVVETIEELLDWLE  248 (249)
T ss_pred             HHHHHHcC--CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC-----CCCCCcccCCHHHHHHHHh
Confidence            56777777  32   3332221     244899999999999998884     2334455789999988874

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=86.09  E-value=13  Score=28.06  Aligned_cols=100  Identities=10%  Similarity=0.084  Sum_probs=66.4

Q ss_pred             CCccchhHHHHHHHHHHC---CCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKH---NIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~---g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ...++|+..+.++..+..   |+.+.-+++.+.... +.+.+. |-.-..-  .-+++.      .+-.+++.++.+.+.
T Consensus       102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~a-r~l~~~-G~~~vmPlg~pIGsg------~Gi~~~~~I~~I~e~  173 (248)
T cd04728         102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLA-KRLEDA-GCAAVMPLGSPIGSG------QGLLNPYNLRIIIER  173 (248)
T ss_pred             ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHc-CCCEeCCCCcCCCCC------CCCCCHHHHHHHHHh
Confidence            456789999999888876   999997777775544 565553 5432211  122222      223347788877766


Q ss_pred             cCCCCCCCceEEEec---CHhHHHHHHHcCCeEEEecCCCCC
Q psy6288          98 FDEKPQPSKCLVFED---APNGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD---~~~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                      .+  +    .+++|-   ++.|+..|.+.|+..+++++....
T Consensus       174 ~~--v----pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~  209 (248)
T cd04728         174 AD--V----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK  209 (248)
T ss_pred             CC--C----cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence            44  2    255655   469999999999999999988643

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE

Probab=85.58  E-value=1.4  Score=32.79  Aligned_cols=31  Identities=19%  Similarity=0.065  Sum_probs=27.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE   53 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~   53 (166)
                      +..+++++.++++.+++.|+++.+-||+...
T Consensus        82 EPll~~~l~~li~~l~~~g~~v~leTNGtl~  112 (238)
T TIGR03365        82 NPALQKPLGELIDLGKAKGYRFALETQGSVW  112 (238)
T ss_pred             chhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence            4556789999999999999999999999864

This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=85.56  E-value=1.7  Score=32.84  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             hhhhhhhcC-------CccchhHHHHHHHHHH-CCCCEEEEeCCchhhHHHHH
Q psy6288          15 FDMDGLLLG-------YNLAIGALRLINHLHK-HNIPFAIATSSAKESFELKT   59 (166)
Q Consensus        15 ~~~~~~~~~-------~~~~~g~~~~l~~l~~-~g~~i~ivS~~~~~~~~~~l   59 (166)
                      .|+++.+..       ..+.|.+.+.|+.|++ .|+.++|+|+.+...+...+
T Consensus        19 ~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~   71 (266)
T PRK10187         19 FDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALA   71 (266)
T ss_pred             EecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhc
Confidence            456665553       3567899999999998 79999999999988775444

>KOG0204|consensus

Probab=85.36  E-value=4.4  Score=35.83  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCcc------------------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVK------------------   82 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~------------------   82 (166)
                      ..+.+||+.++++.+++.|+.+-.||+..-..+ +.+....|+-..=+  ..+.+.   +..                  
T Consensus       645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TA-kAIA~eCGILt~~~d~~~lEG~---eFr~~s~ee~~~i~pkl~VlA  720 (1034)
T KOG0204|consen  645 KDPVRPGVPEAVQLCQRAGITVRMVTGDNINTA-KAIARECGILTPGGDFLALEGK---EFRELSQEERDKIWPKLRVLA  720 (1034)
T ss_pred             cCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHH-HHHHHHcccccCCCccceecch---hhhhcCHHHHHhhhhhheeee
Confidence            357899999999999999999999999986555 44444456543222  122221   111                  


Q ss_pred             CCCC-ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe-EEEe
Q psy6288          83 QGKP-APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS-CVMV  130 (166)
Q Consensus        83 ~~Kp-~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v  130 (166)
                      .+-| +...+-+.+++.     .+=+.+-||+-+|..+-+++.+. +.++
T Consensus       721 RSSP~DK~lLVk~L~~~-----g~VVAVTGDGTNDaPALkeADVGlAMGI  765 (1034)
T KOG0204|consen  721 RSSPNDKHLLVKGLIKQ-----GEVVAVTGDGTNDAPALKEADVGLAMGI  765 (1034)
T ss_pred             cCCCchHHHHHHHHHhc-----CcEEEEecCCCCCchhhhhcccchhccc
Confidence            1111 122222333333     23466679999999999998775 3344

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=84.46  E-value=2.2  Score=31.69  Aligned_cols=50  Identities=12%  Similarity=0.078  Sum_probs=36.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~   75 (166)
                      ...-|.+.+++++++++|+.++++|+.+...+...+ +.+++.. .+.+++.
T Consensus        20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~~-p~~~I~~   69 (249)
T TIGR01485        20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLLT-PDIWVTS   69 (249)
T ss_pred             hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCCC-CCEEEEc
Confidence            345688999999999999999999999988775554 3346543 3444443

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=84.12  E-value=16  Score=27.67  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=68.8

Q ss_pred             CCccchhHHHHHHH---HHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          23 GYNLAIGALRLINH---LHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        23 ~~~~~~g~~~~l~~---l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ...++|+..+.++.   |-+.|+.+..+++.+.. +.+++.+. |-.-..  -.-++      .+.+-.++..++.+.+.
T Consensus       116 ~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~a~rLed~-Gc~aVMPlgsPIG------Sg~Gl~n~~~l~~i~e~  187 (267)
T CHL00162        116 PKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPM-LAKHLEDI-GCATVMPLGSPIG------SGQGLQNLLNLQIIIEN  187 (267)
T ss_pred             CcccCCChHHHHHHHHHHHHCCCEEeecCCCCHH-HHHHHHHc-CCeEEeeccCccc------CCCCCCCHHHHHHHHHc
Confidence            35678887777655   55789999999999955 54677664 543211  11122      23455578888888887


Q ss_pred             cCCCCCCCceEEEecC---HhHHHHHHHcCCeEEEecCCCC
Q psy6288          98 FDEKPQPSKCLVFEDA---PNGVLGAKAAGMSCVMVPDPTV  135 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~---~~Di~~a~~~G~~~i~v~~~~~  135 (166)
                      ..  ++    +++|-+   ..|+..|.+.|+..++++.+..
T Consensus       188 ~~--vp----VivdAGIgt~sDa~~AmElGaDgVL~nSaIa  222 (267)
T CHL00162        188 AK--IP----VIIDAGIGTPSEASQAMELGASGVLLNTAVA  222 (267)
T ss_pred             CC--Cc----EEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence            65  32    566664   4999999999999999988753

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=82.83  E-value=2.7  Score=36.24  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      .|+++.+..  ....+...++|++|+++|++++++|+.+...+.... +.+++..
T Consensus       421 sDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~~  474 (694)
T PRK14502        421 TDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIKD  474 (694)
T ss_pred             EECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCCC
Confidence            456665543  235677899999999999999999999988764444 4456643

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=82.68  E-value=12  Score=25.16  Aligned_cols=105  Identities=12%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh----hhcCcccccceEEecCCCC---CccCCCCChHHHHHHHHH
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTS----RHKDTLKLFHHVVLGSADP---EVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~----~~~gl~~~fd~v~~~~~~~---~~~~~Kp~~~~~~~~~~~   97 (166)
                      .....+.+.+....++|-+++++-++........+.    ...++.......+....+.   ......-.+.+.++++..
T Consensus        19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   98 (138)
T PF13580_consen   19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLAL   98 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHH
Confidence            334556667777777888999998886433322222    2223333333333333000   001112234556777888


Q ss_pred             cCCCCCCCceEEE----ecCHhHH---HHHHHcCCeEEEec
Q psy6288          98 FDEKPQPSKCLVF----EDAPNGV---LGAKAAGMSCVMVP  131 (166)
Q Consensus        98 ~~~~~~~~~~i~I----GD~~~Di---~~a~~~G~~~i~v~  131 (166)
                      ++  ..+..++++    |.+++-+   ..|++.|+.+|.++
T Consensus        99 ~~--~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT  137 (138)
T PF13580_consen   99 YD--IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT  137 (138)
T ss_dssp             TT----TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred             cC--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            77  778888876    5556544   55667799999875

...

>PLN02423 phosphomannomutase

Probab=80.86  E-value=1.4  Score=32.86  Aligned_cols=31  Identities=16%  Similarity=0.044  Sum_probs=28.3

Q ss_pred             CCCceEEEec----CHhHHHHHHHcCCeEEEecCC
Q psy6288         103 QPSKCLVFED----APNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       103 ~~~~~i~IGD----~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      ++++++.+||    +.||++.-+..|+.++.|..+
T Consensus       199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~  233 (245)
T PLN02423        199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSP  233 (245)
T ss_pred             CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCH
Confidence            5899999999    699999999999999999765

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=80.74  E-value=10  Score=31.92  Aligned_cols=88  Identities=8%  Similarity=-0.017  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288          29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL  108 (166)
Q Consensus        29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i  108 (166)
                      ++...|..+++.+-+++|++-.........+.+.+++.-  +.+....           .+-....++++.   ...--+
T Consensus        95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i--~~~~~~~-----------~~e~~~~v~~lk---~~G~~~  158 (538)
T PRK15424         95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI--EQRSYVT-----------EEDARGQINELK---ANGIEA  158 (538)
T ss_pred             HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEecC-----------HHHHHHHHHHHH---HCCCCE
Confidence            344455555666778999987654444345555444432  1111111           222344444443   123457


Q ss_pred             EEecCHhHHHHHHHcCCeEEEecCC
Q psy6288         109 VFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       109 ~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +|||+.. ...|.++|+..+++..+
T Consensus       159 vvG~~~~-~~~A~~~g~~g~~~~s~  182 (538)
T PRK15424        159 VVGAGLI-TDLAEEAGMTGIFIYSA  182 (538)
T ss_pred             EEcCchH-HHHHHHhCCceEEecCH
Confidence            7899887 89999999999999754

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=80.58  E-value=26  Score=27.55  Aligned_cols=99  Identities=7%  Similarity=0.033  Sum_probs=67.6

Q ss_pred             CCccchhHHHHHHHHHHC---CCCEEEEeCCchhhHHHHHhhhcCccc--ccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKH---NIPFAIATSSAKESFELKTSRHKDTLK--LFHHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~---g~~i~ivS~~~~~~~~~~l~~~~gl~~--~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      +..++|+..+.++..+..   |+.+.++++.+.... +.+.+ +|-.-  ..-..+++.    .  +-.+|+.++.+.+.
T Consensus       176 ~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a-~~l~~-~g~~avmPl~~pIGsg----~--gv~~p~~i~~~~e~  247 (326)
T PRK11840        176 AKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAA-KRLED-AGAVAVMPLGAPIGSG----L--GIQNPYTIRLIVEG  247 (326)
T ss_pred             CCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHh-cCCEEEeeccccccCC----C--CCCCHHHHHHHHHc
Confidence            356788888888888776   999988888875544 55545 35421  111222322    2  22278888888887


Q ss_pred             cCCCCCCCceEEEecC---HhHHHHHHHcCCeEEEecCCCC
Q psy6288          98 FDEKPQPSKCLVFEDA---PNGVLGAKAAGMSCVMVPDPTV  135 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~---~~Di~~a~~~G~~~i~v~~~~~  135 (166)
                      ..  +    -+++|-+   ..|+..|-+.|+..++++++..
T Consensus       248 ~~--v----pVivdAGIg~~sda~~AmelGadgVL~nSaIa  282 (326)
T PRK11840        248 AT--V----PVLVDAGVGTASDAAVAMELGCDGVLMNTAIA  282 (326)
T ss_pred             CC--C----cEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence            54  2    2677764   4999999999999999998853

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=80.50  E-value=3.5  Score=30.30  Aligned_cols=46  Identities=15%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288          28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS   76 (166)
Q Consensus        28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~   76 (166)
                      +...+.++ ++++|++++++|+.+...+...+.. +++.. .+.+++..
T Consensus        18 ~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~-l~l~~-~~~~I~~n   63 (236)
T TIGR02471        18 ASFVELLR-GSGDAVGFGIATGRSVESAKSRYAK-LNLPS-PDVLIARV   63 (236)
T ss_pred             HHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHh-CCCCC-CCEEEECC
Confidence            33446676 6888999999999999988666644 56653 44555554

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
3l5k_A	250	The Crystal Structure Of Human Haloacid Dehalogenas		9e-43
3kbb_A	216	Crystal Structure Of Putative Beta-Phosphoglucomuta		1e-07
3nas_A	233	The Crystal Structure Of Beta-Phosphoglucomutase Fr		4e-07
3e58_A	214	Crystal Structure Of Putative Beta-Phosphoglucomuta		1e-06
3s6j_A	233	The Crystal Structure Of A Hydrolase From Pseudomon		6e-05
4gib_A	250	2.27 Angstrom Crystal Structure Of Beta-Phosphogluc		1e-04
3dv9_A	247	Putative Beta-Phosphoglucomutase From Bacteroides V		4e-04
1lvh_A	221	The Structure Of Phosphorylated Beta-phosphoglucomu		6e-04
1o03_A	221	Structure Of Pentavalent Phosphorous Intermediate O		7e-04
3fm9_A	221	Analysis Of The Structural Determinants Underlying		7e-04

>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like Hydrolase Domain Containing 1a (Hdhd1a) Length = 250

Iteration: 1
 Score =  169 bits (427), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA +LI HL KH IPFA+ATSS   SF++KTSRHK+   LF H+VLG  DPEV+ GKP P
Sbjct: 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDP 174
Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+FL  AKRF   P   KCLVFEDAPNGV  A AAGM  VMVPD  + +  T  A LVLN
Sbjct: 175 DIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 234
Query: 149 SLEEFKPELYGLPPFE 164
           SL++F+PEL+GLP +E
Sbjct: 235 SLQDFQPELFGLPSYE 250

>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From Thermotoga Maritima Length = 216

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G    +  +    I  A+ATS+ +    L+  R  D  K F   V G    +VK GKP P
Sbjct: 88  GVREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYFDVXVFGD---QVKNGKPDP 143
Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128
           +++L+  +R +    P K +VFED+ +GV  AK+AG+  +
Sbjct: 144 EIYLLVLERLN--VVPEKVVVFEDSKSGVEAAKSAGIERI 181

>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From Bacillus Subtilis Length = 233

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE-VKQGKPA 87
           G  RL+  L   NI   +A+SS       K  R    +  FH +V    DP  + +GKP 
Sbjct: 96  GIGRLLCQLKNENIKIGLASSSRNAP---KILRRLAIIDDFHAIV----DPTTLAKGKPD 148
Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV--PDPTVPKHRTEAADL 145
           PD+FL AA   D    P+ C   EDA  G+   K+AG   V V    P +       ADL
Sbjct: 149 PDIFLTAAAXLD--VSPADCAAIEDAEAGISAIKSAGXFAVGVGQGQPXL------GADL 200
Query: 146 VLNSLEEFKPEL 157
           V+    +   EL
Sbjct: 201 VVRQTSDLTLEL 212

>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From Streptococcus Thermophilus Length = 214

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 31  LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV 90
           L+++N +    +   +A+SS K   ++  +  ++ L+ F  +VL     E K+ KP P++
Sbjct: 95  LKVLNEVKSQGLEIGLASSSVKA--DIFRALEENRLQGFFDIVLSG--EEFKESKPNPEI 150
Query: 91  FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL 150
           +L A K+ +   Q S+ L+ ED+  G+    AA +    + D      ++ AA  +L+SL
Sbjct: 151 YLTALKQLN--VQASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGXDQS-AAKGLLDSL 207

>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas Syringae Length = 233

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA+ L+  L K N+ + IATS   ++  +        LKL  + +      +V  GKP P
Sbjct: 95  GAVELLETLDKENLKWCIATSGGIDTATINLK----ALKLDINKINIVTRDDVSYGKPDP 150
Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAK 121
           D+FL AAK+        +CLV  DA    L A+
Sbjct: 151 DLFLAAAKKI--GAPIDECLVIGDAIWDXLAAR 181

>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase (Pgmb) From Clostridium Difficile Length = 250

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 59  TSRHKDTLKLFHHVVLGSADP--------EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVF 110
           +S  K+ + + +H  LG +D         + K  KP P++FL++AK  +  PQ   C+  
Sbjct: 138 SSASKNAINVLNH--LGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQ--NCIGI 193
Query: 111 EDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPE 156
           EDA  G+    +A M  V V +        + A+LV++S  + K E
Sbjct: 194 EDASAGIDAINSANMFSVGVGNY----ENLKKANLVVDSTNQLKFE 235

>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus Length = 247

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 80  EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR 139
           +VK GKP P+ +L A K+   KP  ++ LV E+AP GV    AAG+  + V   T P H 
Sbjct: 160 DVKYGKPNPEPYLXALKKGGFKP--NEALVIENAPLGVQAGVAAGIFTIAV--NTGPLHD 215
Query: 140 ----TEAADLVLNSLEEF 153
                E A+L+ +S  +F
Sbjct: 216 NVLLNEGANLLFHSXPDF 233

>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase From Lactoccocus Lactis To 2.3 Angstrom Resolution Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPA 87
           G L+L+  L  + I  A+A++S    F L     +  L  +   +   ADP EV   KPA
Sbjct: 95  GILQLLKDLRSNKIKIALASASKNGPFLL----ERMNLTGYFDAI---ADPAEVAASKPA 147
Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
           PD+F+ AA        PS+ +  ED+  G+   K +G   + V  P
Sbjct: 148 PDIFIAAAHAV--GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191

>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An Enzyme Catalyzed Phosphoryl Transfer Reaction Observed On Cocrystallization With Glucose 6-Phosphate Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPA 87
           G L+L+  L  + I  A+A++S    F L     +  L  +   +   ADP EV   KPA
Sbjct: 95  GILQLLKDLRSNKIKIALASASKNGPFLL----ERMNLTGYFDAI---ADPAEVAASKPA 147
Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
           PD+F+ AA        PS+ +  ED+  G+   K +G   + V  P
Sbjct: 148 PDIFIAAAHAV--GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191

>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying Discrimination Between Substrate And Solvent In Beta- Phosphoglucomutase Catalysis Length = 221

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPA 87
           G L+L+  L  + I  A+A++S    F L     +  L  +   +   ADP EV   KPA
Sbjct: 95  GILQLLKDLRSNKIKIALASASKNGPFLL----ERMNLTGYFDAI---ADPAEVAASKPA 147
Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
           PD+F+ AA        PS+ +  ED+  G+   K +G   + V  P
Sbjct: 148 PDIFIAAAHAV--GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	1e-70
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	6e-48
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	1e-44
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	6e-44
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	2e-42
1te2_A	226	Putative phosphatase; structural genomics, phospha	3e-42
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	7e-40
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	3e-38
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	7e-37
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	2e-36
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	2e-35
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	6e-35
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	3e-33
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	2e-24
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	4e-18
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	5e-16
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	6e-16
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	5e-14
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	6e-13
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	7e-12
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	2e-11
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	6e-11
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	9e-11
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	1e-10
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	3e-10
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	4e-09
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	5e-09
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	6e-09
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	8e-09
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	1e-08
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	1e-08
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	1e-08
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	2e-08
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	2e-08
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	3e-08
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	4e-08
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	5e-08
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	1e-07
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	1e-07
2zg6_A	220	Putative uncharacterized protein ST2620, probable	1e-07
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	2e-07
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	3e-07
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	3e-07
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	4e-07
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	1e-06
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	1e-06
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	3e-06
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	4e-06
2hsz_A	243	Novel predicted phosphatase; structural genomics,	1e-05
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	4e-05
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	2e-04
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	4e-04
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	4e-04
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	5e-04
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	7e-04

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} Length = 250

 Score =  212 bits (542), Expect = 1e-70
 Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 1/136 (0%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA +LI HL KH IPFA+ATSS   SF++KTSRHK+   LF H+VLG  DPEV+ GKP P
Sbjct: 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDP 174

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+FL  AKRF   P   KCLVFEDAPNGV  A AAGM  VMVPD  + +  T  A LVLN
Sbjct: 175 DIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 234

Query: 149 SLEEFKPELYGLPPFE 164
           SL++F+PEL+GLP +E
Sbjct: 235 SLQDFQPELFGLPSYE 250

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247

 Score =  154 bits (392), Expect = 6e-48
 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GAL ++  +    +   + T S + S   + + +   +   + +V  +A  +VK GKP P
Sbjct: 112 GALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLMV--TAF-DVKYGKPNP 168

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLV 146
           + +L+A K+     +P++ LV E+AP GV    AAG+  + V    +  +    E A+L+
Sbjct: 169 EPYLMALKKGG--FKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLL 226

Query: 147 LNSLEEFKPEL 157
            +S+ +F    
Sbjct: 227 FHSMPDFNKNW 237

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A Length = 243

 Score =  144 bits (365), Expect = 6e-44
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA  L+  +    +   + T S + S   +   +   +     +V  +A  +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMV--TAF-DVKYGKPNP 169

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLV 146
           + +L+A K+   K    + +V E+AP GV     AG+  + V    +         ADL+
Sbjct: 170 EPYLMALKKGGLKAD--EAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLL 227

Query: 147 LNSLEEFKPEL 157
             S++      
Sbjct: 228 FPSMQTLCDSW 238

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Length = 214

 Score =  139 bits (353), Expect = 2e-42
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             L+++N +    +   +A+SS K         +      F  V+  S + E K+ KP P
Sbjct: 93  DVLKVLNEVKSQGLEIGLASSSVKADIFRALEEN-RLQGFFDIVL--SGE-EFKESKPNP 148

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           +++L A K+ + +   S+ L+ ED+  G+    AA +    + D         AA  +L+
Sbjct: 149 EIYLTALKQLNVQA--SRALIIEDSEKGIAAGVAADVEVWAIRDNEFG-MDQSAAKGLLD 205

Query: 149 SLEEFKPEL 157
           SL +    +
Sbjct: 206 SLTDVLDLI 214

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226

 Score =  139 bits (353), Expect = 3e-42
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G    +    +  +   +A++S     E   +   D    F  +   SA+ ++   KP P
Sbjct: 98  GVREAVALCKEQGLLVGLASASPLHMLEKVLTMF-DLRDSFDALA--SAE-KLPYSKPHP 153

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVL 147
            V+L  A +    P    C+  ED+ NG++ +KAA M  ++VP P      R   A++ L
Sbjct: 154 QVYLDCAAKLGVDP--LTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKL 211

Query: 148 NSLEEFKPE 156
           +SL E   +
Sbjct: 212 SSLTELTAK 220

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Length = 221

 Score =  133 bits (337), Expect = 7e-40
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 12/128 (9%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G L+L+  L  + I  A+A++S    F L+          F  +   +   EV   KPAP
Sbjct: 95  GILQLLKDLRSNKIKIALASASKNGPFLLERMNLTG---YFDAIADPA---EVAASKPAP 148

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+F+ AA      P  S+ +  ED+  G+   K +G   + V  P           +++ 
Sbjct: 149 DIFIAAAHAVGVAP--SESIGLEDSQAGIQAIKDSGALPIGVGRP----EDLGDDIVIVP 202

Query: 149 SLEEFKPE 156
               +  E
Sbjct: 203 DTSHYTLE 210

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} Length = 233

 Score =  129 bits (327), Expect = 3e-38
 Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G  RL+  L   NI   +A+SS      L+       +  FH +V  +    + +GKP P
Sbjct: 96  GIGRLLCQLKNENIKIGLASSSRNAPKILR---RLAIIDDFHAIVDPT---TLAKGKPDP 149

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+FL AA   D  P  + C   EDA  G+   K+AGM  V V            ADLV+ 
Sbjct: 150 DIFLTAAAMLDVSP--ADCAAIEDAEAGISAIKSAGMFAVGVGQG----QPMLGADLVVR 203

Query: 149 SLEEFKPEL 157
              +   EL
Sbjct: 204 QTSDLTLEL 212

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} Length = 243

 Score =  126 bits (318), Expect = 7e-37
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G   L+  L    I   +A+ S      L     ++    F       A  ++K  KP P
Sbjct: 99  GIRSLLADLRAQQISVGLASVSLNAPTILAALELRE---FFTFCA--DAS-QLKNSKPDP 152

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           ++FL A       P    C+  EDA  G+    A+GM  V +            A L+L 
Sbjct: 153 EIFLAACAGLGVPP--QACIGIEDAQAGIDAINASGMRSVGIGAG------LTGAQLLLP 204

Query: 149 SLEEFKPE 156
           S E     
Sbjct: 205 STESLTWP 212

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259

 Score =  125 bits (316), Expect = 2e-36
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA   +  L    +PFAI ++S +    LK        +L    +   +     +GKP P
Sbjct: 114 GAAETLRALRAAGVPFAIGSNSERGRLHLKLRVA-GLTELAGEHIYDPSW-VGGRGKPHP 171

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA------ 142
           D++  AA++    P   +C+V ED+  G     AAG +   +  P  P     A      
Sbjct: 172 DLYTFAAQQLGILP--ERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLG 229

Query: 143 ADLVLNSLEEFKPEL 157
           A  VL S  E +  L
Sbjct: 230 AARVLTSHAELRAAL 244

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} Length = 275

 Score =  123 bits (310), Expect = 2e-35
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 29  GALRLINHLHKHNI-PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
           GA++L N L+      +A+ATS  ++  +      K  +K   + +  +A+ +VKQGKP 
Sbjct: 118 GAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILK--IKRPEYFI--TAN-DVKQGKPH 172

Query: 88  PDVFLVAAKRF-----DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA 142
           P+ +L           ++ P  SK +VFEDAP G+   KAAG   V +          E 
Sbjct: 173 PEPYLKGRNGLGFPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEK 232

Query: 143 -ADLVLNSLEEFKPELY 158
             D+++ + E  +   Y
Sbjct: 233 GCDIIVKNHESIRVGEY 249

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6 Length = 229

 Score =  120 bits (304), Expect = 6e-35
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G    ++ L     P  I ++S+    ++  ++       F   +  + D    + KP P
Sbjct: 91  GVKFALSRLT---TPRCICSNSSSHRLDMMLTKV-GLKPYFAPHIYSAKDLGADRVKPKP 146

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP------KHRTEA 142
           D+FL  A +F   P   + +V ED+ +G+ GA+AAGM  +     +        +     
Sbjct: 147 DIFLHGAAQFGVSP--DRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAG 204

Query: 143 ADLVLNSLEEFKPEL 157
           A+ V++ +++  P +
Sbjct: 205 AETVISRMQDL-PAV 218

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score =  116 bits (293), Expect = 3e-33
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA+ L+  L K N+ + IATS   ++  +             ++V  + D +V  GKP P
Sbjct: 95  GAVELLETLDKENLKWCIATSGGIDTATINLKAL-KLDINKINIV--TRD-DVSYGKPDP 150

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA--ADLV 146
           D+FL AAK+        +CLV  DA   +L A+    + V +          E   A  V
Sbjct: 151 DLFLAAAKKIGAPID--ECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRV 208

Query: 147 LNSLEEFKPEL 157
                +    L
Sbjct: 209 YEDPLDLLNHL 219

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} Length = 277

 Score = 94.6 bits (235), Expect = 2e-24
 Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 4/123 (3%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G   + + L    I     T              K+        V      +V +G+P P
Sbjct: 115 GWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPASTV---FATDVVRGRPFP 171

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
           D+ L  A   +     + C+  +D   G+     AGM  V V                L+
Sbjct: 172 DMALKVALELEVGH-VNGCIKVDDTLPGIEEGLRAGMWTVGVSCSGNEVGLDREDWQALS 230

Query: 149 SLE 151
           S E
Sbjct: 231 SDE 233

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Length = 137

 Score = 75.2 bits (185), Expect = 4e-18
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 14/146 (9%)

Query: 13  VIFDMDGLLLGYNLAI-GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH 71
           +I D  G+L G +        L+    K+ +   I ++              +T  +   
Sbjct: 5   LIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIREL-ETNGVVDK 63

Query: 72  VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
           V+L     E+   KP    F  AA   D   +   C++ +D+   V GA  AG+  V   
Sbjct: 64  VLLSG---ELGVEKPEEAAFQAAADAIDLPMR--DCVLVDDSILNVRGAVEAGLVGVYYQ 118

Query: 132 DPTVPKHRTEAADLVLNSLEEFKPEL 157
                    + A + +  L   + E 
Sbjct: 119 QF-------DRAVVEIVGLFGLEGEF 137

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} Length = 196

 Score = 71.1 bits (174), Expect = 5e-16
 Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA   +  L    +P A      +       +   D       ++  +A      G P P
Sbjct: 40  GAQNALKALRDQGMPCAWIDELPEALSTPLAAPVND------WMI--AAP-RPTAGWPQP 90

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
           D   +A    +       C++    P  +     AG+  + + 
Sbjct: 91  DACWMALMALNVSQ-LEGCVLISGDPRLLQSGLNAGLWTIGLA 132

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A Length = 267

 Score = 71.8 bits (176), Expect = 6e-16
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G   +I  L +  I     T   +E  ++               ++   D  V  G+P P
Sbjct: 107 GVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ-GYKPDFLVTPDD--VPAGRPYP 163

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
            +    A      P  +  +   D  + +   + AGM  V V
Sbjct: 164 WMCYKNAMELGVYP-MNHMIKVGDTVSDMKEGRNAGMWTVGV 204

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score = 66.2 bits (162), Expect = 5e-14
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA+ L++ L ++NI  AI ++            HK+    F  ++   +  +    KP+P
Sbjct: 107 GAIELLDTLKENNITMAIVSNKN-GERLRSEIHHKNLTHYFDSII--GSG-DTGTIKPSP 162

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE--AADLV 146
           +  L A    + +P         D+ + +  A  AG   +      + K          +
Sbjct: 163 EPVLAALTNINIEPSKE-VFFIGDSISDIQSAIEAGCLPIKYGSTNIIKDILSFKNFYDI 221

Query: 147 LNSLEE 152
            N + +
Sbjct: 222 RNFICQ 227

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 Length = 190

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G   L+  +        + +   +    L+          F  VV  ++     + KP P
Sbjct: 86  GVSDLLEDISNQGGRHFLVSH--RNDQVLEILEKTSIAAYFTEVV--TSS-SGFKRKPNP 140

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
           +  L   +++    Q S  LV  D P  +   +AAG+   +  
Sbjct: 141 ESMLYLREKY----QISSGLVIGDRPIDIEAGQAAGLDTHLFT 179

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} Length = 200

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             L L   L           +  ++  E +        +        S+   +   KP P
Sbjct: 90  EVLALARDL-GQRYRMYSLNNEGRDLNEYRIRTF-GLGEFLLAFFT-SS--ALGVMKPNP 144

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
            ++ +       +P   + ++ +D    V  A+A GM  V   D 
Sbjct: 145 AMYRLGLTLAQVRP--EEAVMVDDRLQNVQAARAVGMHAVQCVDA 187

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6 Length = 234

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 8/133 (6%)

Query: 29  GALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
           G   L++ L    ++   + T + + S   K          F       AD +       
Sbjct: 97  GVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLP-GIDHYFPFGA--FAD-DALDRNEL 152

Query: 88  PDVFLVAAKRFDEKP-QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAAD 144
           P + L  A+R       PS+ ++  D  + +  A+      + V                
Sbjct: 153 PHIALERARRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPG 212

Query: 145 LVLNSLEEFKPEL 157
            +  +  E    L
Sbjct: 213 TLFKNFAETDEVL 225

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score = 57.6 bits (140), Expect = 6e-11
 Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 7/132 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA+ L+  L        I T +A       T         F    +   D      KP P
Sbjct: 74  GAVELVRELAGRGYRLGILTRNA-RELAHVTLEAIGLADCFAEADVLGRD--EAPPKPHP 130

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
              L  A+ +D    PS+ ++  D    +   +AAG   V+V  P       E  D    
Sbjct: 131 GGLLKLAEAWDV--SPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPD--NPWPELTDWHAR 186

Query: 149 SLEEFKPELYGL 160
              + +  L   
Sbjct: 187 DCAQLRDLLSAE 198

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 57.9 bits (139), Expect = 9e-11
 Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 28/159 (17%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD---------- 78
               L+N L        IAT     +  +    +   L  F    + +A           
Sbjct: 219 EVKVLLNDLKGAGFELGIATGRP-YTETVVPFENLGLLPYFEADFIATASDVLEAENMYP 277

Query: 79  PEVKQGKPAPDVFLVAAKRFDEKP------------QPSKCLVFEDAPNGVLGAKAAGMS 126
                GKP P  ++ A    +                     +  D+   +L A+  G +
Sbjct: 278 QARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGAT 337

Query: 127 CVMV-----PDPTVPKHRTEAADLVLNSLEEFKPELYGL 160
            +             +     AD V+N L E +  L  L
Sbjct: 338 FIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNL 376

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 8/130 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT--LKLFHHVVLGSADPEVKQGKP 86
           G    +  + +  +  A+  +             +    ++            EV   KP
Sbjct: 103 GTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFFAD---EVLSYKP 159

Query: 87  APDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADL 145
             ++F      F+   +P + L   D       GA+  GM  V +        + E    
Sbjct: 160 RKEMFEKVLNSFE--VKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGF 217

Query: 146 VLNSLEEFKP 155
            + S+   K 
Sbjct: 218 EIPSIANLKD 227

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 Length = 206

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             + +++ L +      + +++ +         + +      H+ L S   ++   KP  
Sbjct: 95  EVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYL-SQ--DLGMRKPEA 151

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
            ++    +     P  S  + F+D  + + GA   G++ ++V D 
Sbjct: 152 RIYQHVLQAEGFSP--SDTVFFDDNADNIEGANQLGITSILVKDK 194

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} Length = 211

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 10/111 (9%)

Query: 28  IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK-----DTLKLFHHVVLGSADPEVK 82
                      + +    + +++     +L  S             F  V   S   ++ 
Sbjct: 91  SAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYA-SC--QMG 147

Query: 83  QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
           + KP  D+FL        KP   + L  +D P  V  A+  G       + 
Sbjct: 148 KYKPNEDIFLEMIADSGMKP--EETLFIDDGPANVATAERLGFHTYCPDNG 196

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA  ++    +  I   I T   K +      +       F  ++  ++       KP+P
Sbjct: 89  GAREVLAWADESGIQQFIYTH--KGNNAFTILKDLGVESYFTEIL--TSQ-SGFVRKPSP 143

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
           +       ++             D    V  A+ +G+  +  
Sbjct: 144 EAATYLLDKYQLNS--DNTYYIGDRTLDVEFAQNSGIQSINF 183

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 225

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
             L  + HL K  I   I ++  K     L   R+      F  ++    + +V   KP 
Sbjct: 93  DTLPTLTHLKKQGIRIGIIST--KYRFRILSFLRNHMPDDWFDIII--GGE-DVTHHKPD 147

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP----DPTVPKHRTEAA 143
           P+  L+A  R    P+  + L   D+      A AAG+S   V            +    
Sbjct: 148 PEGLLLAIDRLKACPE--EVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEF--QAYPY 203

Query: 144 DLVLNSLEE 152
           D ++++L +
Sbjct: 204 DRIISTLGQ 212

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* Length = 240

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 34  INHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV 93
           +  L       AI ++   E  +    +     ++    +  SAD ++K  KP P ++  
Sbjct: 114 LEKLKSAGYIVAILSNGNDEMLQ-AALKASKLDRVLDSCL--SAD-DLKIYKPDPRIYQF 169

Query: 94  AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR-TEAADLVLNSLEE 152
           A  R      P++          + GA   G + V +     P           +NSL E
Sbjct: 170 ACDRLGVN--PNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLKHQVNSLSE 227

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A Length = 261

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 11/128 (8%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHK--DTLKLFHHVVLGSADPEVKQGKP 86
             +  +    +  +   I +S + E+ +L        D L+L         D ++   K 
Sbjct: 134 DVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF----DTKI-GHKV 188

Query: 87  APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV--PDPTVPKHRTEAAD 144
             + +   A         +  L   D       A+ A +   +V  P         +   
Sbjct: 189 ESESYRKIADSIGCST--NNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYY 246

Query: 145 LVLNSLEE 152
            ++ S  E
Sbjct: 247 SLITSFSE 254

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} Length = 241

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA +++  L +      I T         K     +    F HV++          KP P
Sbjct: 98  GARKVLIRLKELGYELGIITDGNPVKQWEKI-LRLELDDFFEHVIISD---FEGVKKPHP 153

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEA---AD 144
            +F  A K F    +P + L+  D   + + GAK  GM  V        +   E    AD
Sbjct: 154 KIFKKALKAF--NVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYAD 211

Query: 145 LVLNSLEEFKP 155
             +++LE    
Sbjct: 212 YEIDNLESLLE 222

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} Length = 240

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHH---VVLGSADPEVKQ 83
           G L L+ +L +  +  A+ ++        K +     L  +LF       LG      + 
Sbjct: 114 GILDLMKNLRQKGVKLAVVSN--------KPNEAVQVLVEELFPGSFDFALGEKSGIRR- 164

Query: 84  GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD--PTVPKHRTE 141
            KPAPD+     K         KC+   D+   +  A+ + M  + V     +VP  +  
Sbjct: 165 -KPAPDMTSECVKVLGVPRD--KCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKH 221

Query: 142 AADLVLNSLEEFKPELYG 159
            A +++++ E+ +  + G
Sbjct: 222 GATVIVDTAEKLEEAILG 239

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A Length = 229

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 29  GALRLINHLHKHNIPFAIA-TSSAKESFELKTS---RHKDTLKLFHHVVLGSADPEVKQG 84
             L L+  L +  + + ++ T+     +  K +   R       F    L S   E+K  
Sbjct: 116 YKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYL-SY--EMKMA 172

Query: 85  KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
           KP P++F    +     P   +    +D+      A+  G+S       
Sbjct: 173 KPEPEIFKAVTEDAGIDP--KETFFIDDSEINCKVAQELGISTYTPKAG 219

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Length = 189

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 15/142 (10%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT--LKLFHHVVLGSADPE-VKQGK 85
            A   +  + +     AI +++A    E+      +   +  F  +   +++ +  K  K
Sbjct: 38  NAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEK 97

Query: 86  PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMVPDPTVPKHRTEA-- 142
           P   +F         +   ++ ++  +     ++GA  AG+  + + +P V         
Sbjct: 98  PDKTIFDFTLNAL--QIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPL 155

Query: 143 -------ADLVLNSLEEFKPEL 157
                      L  + E    L
Sbjct: 156 VAPPFVIPVWDLADVPEALLLL 177

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 Length = 209

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
           G   L   L    +   I TS  +  +      R    +      +  SAD +  + KP 
Sbjct: 87  GITSLFEQLPS-ELRLGIVTS--QRRNELESGMRSYPFMMRMAVTI--SAD-DTPKRKPD 140

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
           P   L A ++ +  PQ    L   D+ +    A+AA +   +      P    +      
Sbjct: 141 PLPLLTALEKVNVAPQ--NALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRF 198

Query: 148 NSLEE 152
               +
Sbjct: 199 QKPLD 203

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A Length = 232

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
                +  L +  +  AI ++ + +S +     H      F H++  S D  V+  KP  
Sbjct: 99  EVPDSLRELKRRGLKLAILSNGSPQSID-AVVSHAGLRDGFDHLL--SVD-PVQVYKPDN 154

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE-AADLVL 147
            V+ +A +        S  L          GA+  G     +              D  +
Sbjct: 155 RVYELAEQALG--LDRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEV 212

Query: 148 NSLEE 152
            SL  
Sbjct: 213 TSLRA 217

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} Length = 226

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
           G   L++ L  +     +ATS  K   F  +   H      F  +V  S D ++      
Sbjct: 90  GIEALLSSLKDYGFHLVVATS--KPTVFSKQILEHFKLAFYFDAIVGSSLDGKLS---TK 144

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
            DV   A +  + K      ++  D    V+GA    +  + V
Sbjct: 145 EDVIRYAMESLNIKS--DDAIMIGDREYDVIGALKNNLPSIGV 185

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} Length = 240

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
               ++  L+K+     +ATS  K   F     R+ D  + F ++   + D         
Sbjct: 114 NMKEILEMLYKNGKILLVATS--KPTVFAETILRYFDIDRYFKYIAGSNLDGTRV---NK 168

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
            +V        + K    K ++  D    ++GAK  G+  + V
Sbjct: 169 NEVIQYVLDLCNVKD-KDKVIMVGDRKYDIIGAKKIGIDSIGV 210

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* Length = 282

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 18/157 (11%), Positives = 40/157 (25%), Gaps = 8/157 (5%)

Query: 8   NYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67
           N +      +  +L         L  +    K +    + T++ K               
Sbjct: 128 NRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKID-KLWLFTNAYKNHAIRCLRLLGIADL 186

Query: 68  LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC 127
                    +  +    KP    F  A K              +D+   +      GM  
Sbjct: 187 FDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLAR-YENAYFIDDSGKNIETGIKLGMKT 245

Query: 128 VMV---PDPTVPKHRTEAADLVLNSLEEFK---PELY 158
            +     +      +T    +V++ + E      +L+
Sbjct: 246 CIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLF 282

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 29  GALRLINHLHKHNIPFAIAT-SSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
             L  +  L  +    A+ + +S +    L+     D  K F  + L     E+K  KP 
Sbjct: 99  DTLEFLEGLKSNGYKLALVSNASPRVKTLLEKF---DLKKYFDALALSY---EIKAVKPN 152

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV 146
           P +F  A  +          +   D      +GAK + +  +++                
Sbjct: 153 PKIFGFALAKV-----GYPAVHVGDIYELDYIGAKRSYVDPILL----DRYDFYPDVRDR 203

Query: 147 LNSLEEFKPEL 157
           + +L E   ++
Sbjct: 204 VKNLREALQKI 214

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} PDB: 1x42_A Length = 234

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             + ++  L        + T S  E              LF  +   +++ E    KP P
Sbjct: 104 EVVEVLKSLKGK-YHVGMITDSDTEQAMAFL-DALGIKDLFDSIT--TSE-EAGFFKPHP 158

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
            +F +A K+     +  + +   D P     G+K  GM+ +++      +   +  D ++
Sbjct: 159 RIFELALKKA--GVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIV 216

Query: 148 NSLEE 152
           + L E
Sbjct: 217 SDLRE 221

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A Length = 201

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 39  KHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98
                    ++ +    + +       L+ F  +        VK+ KP+P V+       
Sbjct: 86  SEIAEVYALSNGSINEVK-QHLERNGLLRYFKGIFSA---ESVKEYKPSPKVYKYFLDSI 141

Query: 99  DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE-AADLVLNSLEE 152
                  +  +       V+GAK AGM  + V              D+++N  +E
Sbjct: 142 G----AKEAFLVSSNAFDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKE 192

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A Length = 260

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
               ++  L K  +   + T+  +++   K          F  +V+G    E K+ KPAP
Sbjct: 125 DVKAMLTELRKE-VRLLLLTNGDRQTQREKIEACA-CQSYFDAIVIGG---EQKEEKPAP 179

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGM--SCVMVPDPTVPKHRTEAADL 145
            +F         +P    C++  D     + G   AG+  +  +     VP   +     
Sbjct: 180 SIFYHCCDLLGVQP--GDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHY 237

Query: 146 VLNSLEEFK 154
           +++S+ E  
Sbjct: 238 MVSSVLELP 246

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} Length = 263

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 25/139 (17%), Positives = 39/139 (28%), Gaps = 23/139 (16%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK------LFHHVVLGSADPEVK 82
           GA   +       +  A+ ++           R +  L        F  V+         
Sbjct: 110 GAEDTLRECRTRGLRLAVISNF--------DRRLEGILGGLGLREHFDFVLTSE---AAG 158

Query: 83  QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTE 141
             KP P +F  A +    +P         D       G +A GM   +V  P        
Sbjct: 159 WPKPDPRIFQEALRLAHMEP--VVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVR 216

Query: 142 ---AADLVLNSLEEFKPEL 157
                + +L SL    P L
Sbjct: 217 DSVPKEHILPSLAHLLPAL 235

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A Length = 253

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 10/107 (9%)

Query: 61  RHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA 120
            +      F  V+  S D   +  KP PD + +  +       P++ L        V GA
Sbjct: 126 ANAGLTDSFDAVI--SVD-AKRVFKPHPDSYALVEEVLGVT--PAEVLFVSSNGFDVGGA 180

Query: 121 KAAGMSCVMV-----PDPTVPKHRTEAADLVLNSLEEFKPELYGLPP 162
           K  G S   V                 A L +      + E Y   P
Sbjct: 181 KNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP 227

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A Length = 222

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 9/130 (6%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
                +  L       A+ ++  K E    K     +    F  +V    D    + KP+
Sbjct: 87  EIPYTLEALKSKGFKLAVVSN--KLEELSKKILDILNLSGYFDLIV--GGD-TFGEKKPS 141

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
           P   L   +   E+P+  K L+  D    +   K AG    +     V    ++  D  L
Sbjct: 142 PTPVLKTLEILGEEPE--KALIVGDTDADIEAGKRAGTKTALALWGYVKL-NSQIPDFTL 198

Query: 148 NSLEEFKPEL 157
           +   +    +
Sbjct: 199 SRPSDLVKLM 208

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A Length = 238

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 7/127 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           GA  LI++L +      I T+    +   +          F  + +     +    KP  
Sbjct: 107 GAFDLISNLQQQ-FDLYIVTNGVSHTQYKRLRDS-GLFPFFKDIFVSE---DTGFQKPMK 161

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
           + F    +R  +       L+  D+    + G + AG+    +     P          +
Sbjct: 162 EYFNYVFERIPQ-FSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEI 220

Query: 148 NSLEEFK 154
             LEE  
Sbjct: 221 RKLEELY 227

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} Length = 240

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             +  + +L KH     I ++  +  F+L  ++       F H++  +A  +V   KP P
Sbjct: 103 DTVEALQYLKKH-YKLVILSNIDRNEFKLSNAKLGV---EFDHII--TAQ-DVGSYKPNP 155

Query: 89  DVFLVAAKRFDE-KPQPSKCLVFEDAPNG-VLGAKAAGMSCVMV--------PDPTVPKH 138
           + F        +   +    L   ++     + A  AG+    +           T    
Sbjct: 156 NNFTYMIDALAKAGIEKKDILHTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGATHVPS 215

Query: 139 RTEAADLVLNSLEEF 153
           R    D   NS+ E 
Sbjct: 216 RMPNVDFRFNSMGEM 230

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 Length = 243

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 12/131 (9%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
                +  L       A+ T+  K                LF  ++       + + KP 
Sbjct: 118 NVKETLEALKAQGYILAVVTN--KPTKHVQPILTAFGIDHLFSEML--GGQ-SLPEIKPH 172

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD---PTVPKHRTEAAD 144
           P  F     +F   P+  + L   D+ N +  A +AG + V +       +P       D
Sbjct: 173 PAPFYYLCGKFGLYPK--QILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIP-IAQSKPD 229

Query: 145 LVLNSLEEFKP 155
            + +   +   
Sbjct: 230 WIFDDFADILK 240

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 210

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 29  GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
             + L+  L   + P  I T+  K  S     +++ +    F  +    + PE       
Sbjct: 88  QIIDLLEELSS-SYPLYITTT--KDTSTAQDMAKNLEIHHFFDGIY--GSSPE---APHK 139

Query: 88  PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
            DV   A +       P + ++  D    +LGA+  G+  + +
Sbjct: 140 ADVIHQALQTHQ--LAPEQAIIIGDTKFDMLGARETGIQKLAI 180

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} Length = 240

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
            A  ++ +L        I ++  +E    K        + F  ++L     ++   KP P
Sbjct: 111 HAKEVLEYLAPQ-YNLYILSNGFRELQSRKMRSAG-VDRYFKKIILSE---DLGVLKPRP 165

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
           ++F  A      +    + L+  D+    + GA   GM      + T            +
Sbjct: 166 EIFHFALSATQSEL--RESLMIGDSWEADITGAHGVGMHQAFY-NVTERTVFPFQPTYHI 222

Query: 148 NSLEEFK 154
           +SL+E  
Sbjct: 223 HSLKELM 229

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} Length = 251

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 20/140 (14%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G    +  +   +    + T       E K  +      LF  + + S        +  P
Sbjct: 116 GVREAVAAI-AADYAVVLITKGDLFHQEQKIEQSG-LSDLFPRIEVVS--------EKDP 165

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV- 146
             +      FD   +  + ++  ++  + V    A G   +  P      H  +      
Sbjct: 166 QTYARVLSEFDLPAE--RFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAAD 223

Query: 147 ------LNSLEEFKPELYGL 160
                 +     +   +  L
Sbjct: 224 EPRLREVPDPSGWPAAVRAL 243

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Length = 187

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
               ++  L    +P A A+ +++        +  +   LF + V     P  K      
Sbjct: 72  EVPEVLKRLQSLGVPGAAASRTSEIEGAN---QLLELFDLFRYFVHREIYPGSK-----I 123

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD 132
             F    ++       S+ + F+D    ++     G++C+ + +
Sbjct: 124 THFERLQQKTGIPF--SQMIFFDDERRNIVDVSKLGVTCIHIQN 165

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A Length = 249

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 13 VIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATS 49
          +  D+D  L+       A  +I  L          +S
Sbjct: 5  IFLDIDKTLIPGYEPDPAKPIIEELKDMGFEIIFNSS 41

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Length = 284

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 2  NISQVLNYVTHVIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
          +   +L     + FD  G L     L  G     ++L      + I T
Sbjct: 6  SFKSLLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVT 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	99.93
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	99.93
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.92
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.92
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	99.91
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	99.91
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.91
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	99.91
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	99.91
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	99.91
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.91
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	99.9
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.9
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	99.9
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.9
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.9
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	99.9
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	99.9
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	99.9
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	99.89
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	99.89
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.89
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.89
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.89
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	99.89
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.89
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.89
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	99.89
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.89
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.88
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	99.88
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.88
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.88
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.88
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.88
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.87
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.87
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	99.87
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.87
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	99.87
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.87
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.86
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.86
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.86
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	99.86
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.86
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.85
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.85
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.85
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.85
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.84
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	99.84
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.83
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.83
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.82
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	99.82
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.82
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.81
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.8
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.8
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	99.8
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.8
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.8
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.79
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.79
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.79
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.78
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.77
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.76
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.76
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.76
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.76
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.75
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.75
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.75
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.74
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.74
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.72
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.7
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.7
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.7
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.69
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.69
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.67
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	99.65
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.65
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.64
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.64
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.64
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.63
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.62
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	99.61
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.61
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.6
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.58
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	99.56
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.55
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	99.32
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.54
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.54
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.54
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.54
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.52
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.51
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	99.51
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.48
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.47
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.46
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.45
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.34
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	99.3
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	99.29
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.28
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.22
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.2
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	99.12
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	99.07
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	99.06
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	98.92
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	98.91
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	98.85
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	98.85
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	98.77
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	98.76
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	98.75
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	98.74
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	98.74
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	98.72
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.7
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	98.59
3dao_A	283	Putative phosphatse; structural genomics, joint ce	98.56
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	98.48
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	98.47
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	98.44
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	98.37
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	98.37
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	98.26
4gxt_A	385	A conserved functionally unknown protein; structur	98.2
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	98.2
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	98.08
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	98.06
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	97.95
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	97.94
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	97.93
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	97.91
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	97.9
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	97.78
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	97.73
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	97.63
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	97.61
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	97.53
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	97.45
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	97.43
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	97.34
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	96.92
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	96.79
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	96.74
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	96.34
3geb_A	274	EYES absent homolog 2; hydrolase, activator, alter	96.26
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	96.1
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	95.86
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	95.85
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	95.34
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	94.74
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	94.71
2q5c_A	196	NTRC family transcriptional regulator; structural	93.71
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	93.36
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	93.21
2pju_A	225	Propionate catabolism operon regulatory protein; s	92.77
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	92.52
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	92.16
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	92.05
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	91.42
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	90.96
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	90.91
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	90.71
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	90.63
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	90.42
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	89.86
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	88.4
3luf_A	259	Two-component system response regulator/ggdef doma	87.79
3dao_A	283	Putative phosphatse; structural genomics, joint ce	87.68
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	86.44
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	86.34
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	83.91
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	83.26
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	81.54
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	81.52
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	81.05
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	80.8
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	80.43

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=159.63  Aligned_cols=142  Identities=61%  Similarity=0.997  Sum_probs=125.6

Q ss_pred             hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ......++||+.++|+.|++.|++++|+||+....+...+.+.+|+..+|+.+++++ +......||++.+|+.++++++
T Consensus       107 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~~~f~~~~~~~-~~~~~~~Kp~~~~~~~~~~~lg  185 (250)
T 3l5k_A          107 VFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDPDIFLACAKRFS  185 (250)
T ss_dssp             HGGGCCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHHTTSSCEECTT-CTTCCSCTTSTHHHHHHHHTSS
T ss_pred             HhccCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHHhheeeEEecc-hhhccCCCCChHHHHHHHHHcC
Confidence            334578999999999999999999999999997777666656568999999998876 1136779999999999999999


Q ss_pred             CCCCC--CceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCCCC
Q psy6288         100 EKPQP--SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFE  164 (166)
Q Consensus       100 ~~~~~--~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  164 (166)
                        +++  ++|++|||+.+|+.+|+++|+.+++|.++....+....++++++++.++.+.|.++++|.
T Consensus       186 --i~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~~~~~~~~ad~v~~sl~el~~~l~~l~~~~  250 (250)
T 3l5k_A          186 --PPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE  250 (250)
T ss_dssp             --SCCCGGGEEEEESSHHHHHHHHHTTCEEEECCCTTSCGGGSTTSSEECSCGGGCCGGGGTCCCCC
T ss_pred             --CCCCcceEEEEeCCHHHHHHHHHcCCEEEEEcCCCCchhhcccccEeecCHHHhhHHHhcCCCCC
Confidence              887  999999999999999999999999999997666667789999999999999999999983

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=99.93  E-value=5.6e-25  Score=162.38  Aligned_cols=126  Identities=22%  Similarity=0.340  Sum_probs=109.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++++.|+++|++++++||+...   ..+++++|+..+||.+++++   ++..+||+|++|+.+++++|  ++
T Consensus        94 ~~~~pg~~~ll~~L~~~g~~i~i~t~~~~~---~~~l~~~gl~~~fd~i~~~~---~~~~~KP~p~~~~~a~~~lg--~~  165 (243)
T 4g9b_A           94 NAVLPGIRSLLADLRAQQISVGLASVSLNA---PTILAALELREFFTFCADAS---QLKNSKPDPEIFLAACAGLG--VP  165 (243)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCCTTH---HHHHHHTTCGGGCSEECCGG---GCSSCTTSTHHHHHHHHHHT--SC
T ss_pred             ccccccHHHHHHhhhcccccceecccccch---hhhhhhhhhccccccccccc---cccCCCCcHHHHHHHHHHcC--CC
Confidence            468999999999999999999999998643   23345679999999999999   89999999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l  157 (166)
                      |++|+||||+.+|+.+|+++|+.+|+|.+|....+  ....++.+++++.++.+.+
T Consensus       166 p~e~l~VgDs~~di~aA~~aG~~~I~V~~g~~~ad~~~~~~~~l~~~~l~~~~~~l  221 (243)
T 4g9b_A          166 PQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNV  221 (243)
T ss_dssp             GGGEEEEESSHHHHHHHHHHTCEEEEESTTCCSCSEEESSGGGCCHHHHHHHHHHH
T ss_pred             hHHEEEEcCCHHHHHHHHHcCCEEEEECCCCCcHHHhcCChhhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999976554  3345677777877775544

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.92  E-value=2.2e-24  Score=155.65  Aligned_cols=130  Identities=30%  Similarity=0.426  Sum_probs=109.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++++.|++.|++++++||++...+...+ +.+|+.++||.+++++   +++..||+|.+|+.+++++|  +
T Consensus        82 ~~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l-~~~~l~~~fd~~~~~~---~~~~~KP~p~~~~~a~~~lg--~  155 (216)
T 3kbb_A           82 LLKENPGVREALEFVKSKRIKLALATSTPQREALERL-RRLDLEKYFDVMVFGD---QVKNGKPDPEIYLLVLERLN--V  155 (216)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECGG---GSSSCTTSTHHHHHHHHHHT--C
T ss_pred             hcccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHH-HhcCCCcccccccccc---ccCCCcccHHHHHHHHHhhC--C
Confidence            4678999999999999999999999999988776555 4579999999999999   89999999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEE-ecCCCCCcc-cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVM-VPDPTVPKH-RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~-v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +|++|+||||+.+|+.+|+++|+++|+ +.++....+ ........+.+..++.+.|.
T Consensus       156 ~p~e~l~VgDs~~Di~aA~~aG~~~i~~v~~g~~~~~~l~~~~~~~i~~~~eli~~l~  213 (216)
T 3kbb_A          156 VPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEILNVLK  213 (216)
T ss_dssp             CGGGEEEEECSHHHHHHHHHTTCCCEEEECCSSSCCHHHHHTTCSEEECGGGHHHHHH
T ss_pred             CccceEEEecCHHHHHHHHHcCCcEEEEecCCCCCHHHHHhCCCcEECCHHHHHHHHH
Confidence            999999999999999999999999984 888865554 22333334446666666554

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.92  E-value=4e-24  Score=152.39  Aligned_cols=131  Identities=16%  Similarity=0.256  Sum_probs=113.5

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCch---hhHHHHHhhhcCcccccceEEecCCCCCc----cCCCCChHHHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAK---ESFELKTSRHKDTLKLFHHVVLGSADPEV----KQGKPAPDVFLVA   94 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----~~~Kp~~~~~~~~   94 (166)
                      ....++||+.++|+.|++.|++++|+||++.   ..+...+ +.+|+..+|+.+++++   +.    ...||+|.+|+.+
T Consensus        31 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l-~~~gl~~~fd~i~~~~---~~~~~~~~~KP~p~~~~~~  106 (189)
T 3ib6_A           31 PEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVL-TNFGIIDYFDFIYASN---SELQPGKMEKPDKTIFDFT  106 (189)
T ss_dssp             TTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHH-HHTTCGGGEEEEEECC---TTSSTTCCCTTSHHHHHHH
T ss_pred             CCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHH-HhcCchhheEEEEEcc---ccccccCCCCcCHHHHHHH
Confidence            4578999999999999999999999999986   5554444 5579999999999998   65    7889999999999


Q ss_pred             HHHcCCCCCCCceEEEecC-HhHHHHHHHcCCeEEEecCCCCCc--c--cccccchhhC--Chhhhhhhhc
Q psy6288          95 AKRFDEKPQPSKCLVFEDA-PNGVLGAKAAGMSCVMVPDPTVPK--H--RTEAADLVLN--SLEEFKPELY  158 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~-~~Di~~a~~~G~~~i~v~~~~~~~--~--~~~~~~~~~~--~~~~l~~~l~  158 (166)
                      +++++  +++++|+||||+ .+|+.+|+++|+.++++.++....  +  ....++++++  ++.++.++|.
T Consensus       107 ~~~~~--~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~~~~v~~~~~l~~l~~~l~  175 (189)
T 3ib6_A          107 LNALQ--IDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFVIPVWDLADVPEALL  175 (189)
T ss_dssp             HHHHT--CCGGGEEEEESBTTTTHHHHHHTTCEEEEECCTTTCBCSSCCCBCSSSCEEEESSGGGHHHHHH
T ss_pred             HHHcC--CCcccEEEECCCcHHHHHHHHHCCCeEEEECCccccccccccccCCCcceeccccHHhHHHHHH
Confidence            99999  999999999999 699999999999999999886532  2  2238899999  9999988764

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=99.91  E-value=2e-23  Score=151.41  Aligned_cols=135  Identities=25%  Similarity=0.279  Sum_probs=119.6

Q ss_pred             hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ......++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++
T Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~l~  161 (233)
T 3s6j_A           86 LQHQIIALPGAVELLETLDKENLKWCIATSGGIDTATINL-KALKLDINKINIVTRD---DVSYGKPDPDLFLAAAKKIG  161 (233)
T ss_dssp             TGGGCEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHH-HTTTCCTTSSCEECGG---GSSCCTTSTHHHHHHHHHTT
T ss_pred             hhccCccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHH-Hhcchhhhhheeeccc---cCCCCCCChHHHHHHHHHhC
Confidence            3345789999999999999999999999999977775555 5579999999999999   88999999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcCC
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                        +++++|++|||+.+|+.+|+++|+.+++|.++.....  ....++++++++.++.++|.+.
T Consensus       162 --~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~l~~~~ad~v~~~~~el~~~l~~~  222 (233)
T 3s6j_A          162 --APIDECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRVYEDPLDLLNHLDEI  222 (233)
T ss_dssp             --CCGGGEEEEESSHHHHHHHHHTTCEEEEEGGGSCCHHHHHHTTCSEEESSHHHHHHTGGGT
T ss_pred             --CCHHHEEEEeCCHHhHHHHHHCCCEEEEEeCCCCchHhHHhcCCCEEECCHHHHHHHHHHH
Confidence              9999999999999999999999999999998855444  2335899999999999998765

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.91  E-value=1.5e-23  Score=151.26  Aligned_cols=126  Identities=15%  Similarity=0.195  Sum_probs=109.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++ |++++|+||+....+...+ +.+|+..+|+.+++++     ...||+|..|+.+++++|  +
T Consensus        82 ~~~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~~~~~l-~~~gl~~~f~~i~~~~-----~~~Kp~p~~~~~~~~~lg--~  152 (210)
T 2ah5_A           82 EAQLFPQIIDLLEELSS-SYPLYITTTKDTSTAQDMA-KNLEIHHFFDGIYGSS-----PEAPHKADVIHQALQTHQ--L  152 (210)
T ss_dssp             SCEECTTHHHHHHHHHT-TSCEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEEC-----SSCCSHHHHHHHHHHHTT--C
T ss_pred             CCCCCCCHHHHHHHHHc-CCeEEEEeCCCHHHHHHHH-HhcCchhheeeeecCC-----CCCCCChHHHHHHHHHcC--C
Confidence            46789999999999999 9999999999987775555 4579999999988765     467999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-c-ccccchhhCChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-R-TEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~l~~~l  157 (166)
                      +|++|++|||+.+|+.+|+++|+.++++.++....+ . ...++++++++.++.++|
T Consensus       153 ~p~~~~~vgDs~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~a~~v~~~~~el~~~l  209 (210)
T 2ah5_A          153 APEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEVLAYF  209 (210)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESSTTHHHHHT
T ss_pred             CcccEEEECCCHHHHHHHHHCCCcEEEEcCCCCCHHHHHhCCCCEEECCHHHHHHHh
Confidence            999999999999999999999999999999865333 2 246899999999998754

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.91  E-value=3e-24  Score=151.29  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=107.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEe-----cCCCCCcc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVL-----GSADPEVK   82 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~-----~~~~~~~~   82 (166)
                      ...++||+.++|+.|+++|++++|+||++.               ..+...+ +.+|  .+|+.++.     ++   ...
T Consensus        25 ~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g--~~~~~~~~~~~~~~~---~~~   98 (179)
T 3l8h_A           25 EWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRAL-AQMG--GVVDAIFMCPHGPDD---GCA   98 (179)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHH-HHTT--CCCCEEEEECCCTTS---CCS
T ss_pred             HceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHH-HhCC--CceeEEEEcCCCCCC---CCC
Confidence            457999999999999999999999999985               3333333 3356  44555553     35   678


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhhhhhhc
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l~~~l~  158 (166)
                      ..||+|.+|+.++++++  +++++|+||||+.+|+.+|+++|+.+++|.+|......    ...++++++++.++.++|+
T Consensus        99 ~~KP~~~~~~~~~~~~~--~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~d~v~~~l~el~~~l~  176 (179)
T 3l8h_A           99 CRKPLPGMYRDIARRYD--VDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPEGTRVCEDLAAVAEQLL  176 (179)
T ss_dssp             SSTTSSHHHHHHHHHHT--CCCTTCEEEESSHHHHHHHHHHTCEEEEESTTTHHHHHHHCCCCTTEEEESSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcC--CCHHHEEEECCCHHHHHHHHHCCCcEEEECCCCcchhhhhcccCCCcEEecCHHHHHHHHH
Confidence            89999999999999999  99999999999999999999999999999999755442    3678999999999999886


Q ss_pred             C
Q psy6288         159 G  159 (166)
Q Consensus       159 ~  159 (166)
                      +
T Consensus       177 ~  177 (179)
T 3l8h_A          177 Q  177 (179)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=99.91  E-value=1.5e-23  Score=155.26  Aligned_cols=124  Identities=24%  Similarity=0.381  Sum_probs=106.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++++.|++.|+++++.|+...  .... ++.+|+.++||.+++++   ++...||+|++|..+++++|  
T Consensus       113 ~~~~~~p~~~~ll~~Lk~~g~~i~i~~~~~~--~~~~-L~~~gl~~~Fd~i~~~~---~~~~~KP~p~~~~~a~~~lg--  184 (250)
T 4gib_A          113 TSNDILPGIESLLIDVKSNNIKIGLSSASKN--AINV-LNHLGISDKFDFIADAG---KCKNNKPHPEIFLMSAKGLN--  184 (250)
T ss_dssp             CGGGSCTTHHHHHHHHHHTTCEEEECCSCTT--HHHH-HHHHTCGGGCSEECCGG---GCCSCTTSSHHHHHHHHHHT--
T ss_pred             cccccchhHHHHHHHHHhcccccccccccch--hhhH-hhhcccccccceeeccc---ccCCCCCcHHHHHHHHHHhC--
Confidence            3456899999999999999999999887653  3334 45579999999999999   89999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhh-hhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFK-PEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~-~~l  157 (166)
                      ++|++|+||||+.+|+.+|+++|+.+|+|.+..    ....++++++++.||. +.|
T Consensus       185 ~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~~~~----~~~~ad~vi~~l~eL~~~~i  237 (250)
T 4gib_A          185 VNPQNCIGIEDASAGIDAINSANMFSVGVGNYE----NLKKANLVVDSTNQLKFEYI  237 (250)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEESCTT----TTTTSSEEESSGGGCCHHHH
T ss_pred             CChHHeEEECCCHHHHHHHHHcCCEEEEECChh----HhccCCEEECChHhCCHHHH
Confidence            999999999999999999999999999996542    2346899999999984 444

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=99.91  E-value=2.1e-23  Score=150.96  Aligned_cols=135  Identities=17%  Similarity=0.177  Sum_probs=120.1

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..++.+++++|  
T Consensus        83 ~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~lg--  156 (226)
T 3mc1_A           83 FENKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQIL-EHFKLAFYFDAIVGSS---LDGKLSTKEDVIRYAMESLN--  156 (226)
T ss_dssp             GSCCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEEC---TTSSSCSHHHHHHHHHHHHT--
T ss_pred             ccCccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhCCHhheeeeeccC---CCCCCCCCHHHHHHHHHHhC--
Confidence            34689999999999999999999999999877775555 5579999999999999   88999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc--ccccchhhCChhhhhhhhcCCCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR--TEAADLVLNSLEEFKPELYGLPP  162 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~  162 (166)
                      +++++|++|||+.+|+.+|+++|+.+++|.++......  ...++++++++.++.+++.+.++
T Consensus       157 i~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~s~~el~~~~~~~~~  219 (226)
T 3mc1_A          157 IKSDDAIMIGDREYDVIGALKNNLPSIGVTYGFGSYEELKNAGANYIVNSVDELHKKILELRE  219 (226)
T ss_dssp             CCGGGEEEEESSHHHHHHHHTTTCCEEEESSSSSCHHHHHHHTCSEEESSHHHHHHHHHTC--
T ss_pred             cCcccEEEECCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCEEECCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999998755543  47889999999999999886653

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=99.91  E-value=3.2e-23  Score=152.22  Aligned_cols=131  Identities=17%  Similarity=0.236  Sum_probs=114.5

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++|++++|+||++...+...+ +.+|+. +|+.+++++   ....+||+|.+|..+++++|  
T Consensus       107 ~~~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~-~f~~~~~~~---~~~~~Kp~p~~~~~~~~~l~--  179 (240)
T 2hi0_A          107 IKTGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLV-EELFPG-SFDFALGEK---SGIRRKPAPDMTSECVKVLG--  179 (240)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHSTT-TCSEEEEEC---TTSCCTTSSHHHHHHHHHHT--
T ss_pred             hcCCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCc-ceeEEEecC---CCCCCCCCHHHHHHHHHHcC--
Confidence            34678999999999999999999999999877665555 446888 999999998   88899999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-c-ccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-R-TEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ++|++|++|||+.+|+.+|+++|+.+++|.++..... . ...++++++++.++..+|.+
T Consensus       180 ~~~~~~~~vGDs~~Di~~a~~aG~~~v~v~~~~~~~~~~~~~~a~~~~~~~~el~~~l~~  239 (240)
T 2hi0_A          180 VPRDKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEEAILG  239 (240)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCCCEECSHHHHHHHHHT
T ss_pred             CCHHHeEEEcCCHHHHHHHHHCCCeEEEECCCCCchhHHHhcCCCEEECCHHHHHHHhcc
Confidence            9999999999999999999999999999998864433 2 24689999999999887643

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.91  E-value=3.2e-23  Score=150.58  Aligned_cols=134  Identities=15%  Similarity=0.213  Sum_probs=119.6

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++.+|+.++++++  
T Consensus        96 ~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--  169 (233)
T 3umb_A           96 ACLSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAV-KSAGMSGLFDHVLSVD---AVRLYKTAPAAYALAPRAFG--  169 (233)
T ss_dssp             HSCEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHH-HTTTCTTTCSEEEEGG---GTTCCTTSHHHHTHHHHHHT--
T ss_pred             hcCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHH-HHCCcHhhcCEEEEec---ccCCCCcCHHHHHHHHHHhC--
Confidence            35788999999999999999999999999987775555 5579999999999999   89999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhhcCCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.++....+ ....++++++++.++.++|.+..
T Consensus       170 ~~~~~~~~vGD~~~Di~~a~~~G~~~~~v~~~~~~~~~~~~~~~~v~~~~~el~~~l~~~~  230 (233)
T 3umb_A          170 VPAAQILFVSSNGWDACGATWHGFTTFWINRLGHPPEALDVAPAAAGHDMRDLLQFVQARQ  230 (233)
T ss_dssp             SCGGGEEEEESCHHHHHHHHHHTCEEEEECTTCCCCCSSSCCCSEEESSHHHHHHHHHC--
T ss_pred             CCcccEEEEeCCHHHHHHHHHcCCEEEEEcCCCCCchhccCCCCEEECCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999865544 45678999999999999987654

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=99.90  E-value=3.3e-23  Score=151.06  Aligned_cols=132  Identities=22%  Similarity=0.256  Sum_probs=118.1

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  
T Consensus       101 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~lg--  174 (237)
T 4ex6_A          101 GPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIA-ELTGLDTRLTVIAGDD---SVERGKPHPDMALHVARGLG--  174 (237)
T ss_dssp             GGGGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHH-HHHTGGGTCSEEECTT---TSSSCTTSSHHHHHHHHHHT--
T ss_pred             cCCccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHH-HHcCchhheeeEEeCC---CCCCCCCCHHHHHHHHHHcC--
Confidence            45678999999999999999999999999987775555 5569999999999999   89999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-c-ccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-R-TEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++++|++|||+.+|+.+|+++|+.+++|.++....+ . ...++++++++.+|.++|..
T Consensus       175 ~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~~~~el~~~l~~  234 (237)
T 4ex6_A          175 IPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMRAGADTVVDSFPAAVTAVLD  234 (237)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCSEEESSHHHHHHHHHH
T ss_pred             CCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCCHHHHHhcCCCEEECCHHHHHHHHHc
Confidence            9999999999999999999999999999999965533 2 34789999999999998764

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.90  E-value=6.3e-23  Score=148.66  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=119.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  
T Consensus        93 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--  166 (230)
T 3um9_A           93 LSLTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVV-GNSGLTNSFDHLISVD---EVRLFKPHQKVYELAMDTLH--  166 (230)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHHTCGGGCSEEEEGG---GTTCCTTCHHHHHHHHHHHT--
T ss_pred             hcCCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHH-HHCCChhhcceeEehh---hcccCCCChHHHHHHHHHhC--
Confidence            45789999999999999999999999999987775555 4469999999999999   88999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhhcCCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.++....+ ....++++++++.++.++|..+.
T Consensus       167 ~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~~  227 (230)
T 3um9_A          167 LGESEILFVSCNSWDATGAKYFGYPVCWINRSNGVFDQLGVVPDIVVSDVGVLASRFSPVD  227 (230)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCCEEEECTTSCCCCCSSCCCSEEESSHHHHHHTCCC--
T ss_pred             CCcccEEEEeCCHHHHHHHHHCCCEEEEEeCCCCccccccCCCcEEeCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999865444 45688999999999999887653

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=99.90  E-value=8.7e-23  Score=148.37  Aligned_cols=131  Identities=15%  Similarity=0.163  Sum_probs=116.9

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++   +....||++..|+.++++++  
T Consensus        80 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~gl~~~f~~i~~~~---~~~~~Kp~~~~~~~~~~~~~--  153 (222)
T 2nyv_A           80 VYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKIL-DILNLSGYFDLIVGGD---TFGEKKPSPTPVLKTLEILG--  153 (222)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECTT---SSCTTCCTTHHHHHHHHHHT--
T ss_pred             ccCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCHHHheEEEecC---cCCCCCCChHHHHHHHHHhC--
Confidence            45789999999999999999999999999877665554 5579999999999998   88899999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++++|++|||+.+|+.+|+++|+.+++|.++...... ..++++++++.++.+++..
T Consensus       154 ~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~-~~~~~~~~~~~el~~~l~~  210 (222)
T 2nyv_A          154 EEPEKALIVGDTDADIEAGKRAGTKTALALWGYVKLNS-QIPDFTLSRPSDLVKLMDN  210 (222)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEETTSSCSCCC-CCCSEEESSTTHHHHHHHT
T ss_pred             CCchhEEEECCCHHHHHHHHHCCCeEEEEcCCCCCccc-cCCCEEECCHHHHHHHHHH
Confidence            99999999999999999999999999999988644444 6789999999999988764

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.90  E-value=1.3e-22  Score=148.60  Aligned_cols=133  Identities=18%  Similarity=0.212  Sum_probs=117.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  
T Consensus       102 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--  175 (240)
T 2no4_A          102 KELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAAL-KASKLDRVLDSCLSAD---DLKIYKPDPRIYQFACDRLG--  175 (240)
T ss_dssp             HTCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGG---GTTCCTTSHHHHHHHHHHHT--
T ss_pred             hcCCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HhcCcHHHcCEEEEcc---ccCCCCCCHHHHHHHHHHcC--
Confidence            35688999999999999999999999999977665555 4579999999999999   88899999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccccccc-chhhCChhhhhhhhcCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAA-DLVLNSLEEFKPELYGL  160 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~  160 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.++.........+ +++++++.++.++|..+
T Consensus       176 ~~~~~~~~iGD~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~  235 (240)
T 2no4_A          176 VNPNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLKHQVNSLSELWPLLAKN  235 (240)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCEEEEECTTCCCCCCTTSCCSEEESSGGGHHHHHCC-
T ss_pred             CCcccEEEEeCCHHHHHHHHHCCCEEEEECCCCCCCcccCCCCceeeCCHHHHHHHHHHh
Confidence            999999999999999999999999999999986532334567 89999999999887654

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=99.90  E-value=8.6e-23  Score=149.37  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..++.++++++  
T Consensus       107 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~g--  180 (240)
T 3sd7_A          107 FENKIYENMKEILEMLYKNGKILLVATSKPTVFAETIL-RYFDIDRYFKYIAGSN---LDGTRVNKNEVIQYVLDLCN--  180 (240)
T ss_dssp             GCCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEEC---TTSCCCCHHHHHHHHHHHHT--
T ss_pred             cccccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HHcCcHhhEEEEEecc---ccCCCCCCHHHHHHHHHHcC--
Confidence            45789999999999999999999999999877775555 4569999999999999   88999999999999999999  


Q ss_pred             CC-CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc--ccccchhhCChhhhhhhhc
Q psy6288         102 PQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR--TEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       102 ~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++ +++|++|||+.+|+.+|+++|+.+++|.++......  ...++++++++.++.++|+
T Consensus       181 ~~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~~~~el~~~ll  240 (240)
T 3sd7_A          181 VKDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESIKDILL  240 (240)
T ss_dssp             CCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSCCHHHHHHHCCSEEESSSTTHHHHHC
T ss_pred             CCCCCcEEEECCCHHHHHHHHHCCCCEEEEeCCCCCHHHHhhcCCCEEECCHHHHHHHhC
Confidence            99 999999999999999999999999999988765553  4788999999999998874

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=99.90  E-value=2e-22  Score=143.93  Aligned_cols=127  Identities=24%  Similarity=0.385  Sum_probs=114.0

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..++.++++++  ++
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--~~  161 (214)
T 3e58_A           88 ELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRAL-EENRLQGFFDIVLSGE---EFKESKPNPEIYLTALKQLN--VQ  161 (214)
T ss_dssp             HHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGG---GCSSCTTSSHHHHHHHHHHT--CC
T ss_pred             CCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHH-HHcCcHhheeeEeecc---cccCCCCChHHHHHHHHHcC--CC
Confidence            368999999999999999999999999987776555 4579999999999999   88999999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +++|++|||+.+|+.+|+++|+.++++.++...... ..++++++++.++.++|
T Consensus       162 ~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~-~~a~~~~~~~~el~~~i  214 (214)
T 3e58_A          162 ASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGMDQ-SAAKGLLDSLTDVLDLI  214 (214)
T ss_dssp             GGGEEEEECSHHHHHHHHHTTCEEEEECCSSSCCCC-TTSSEEESSGGGGGGGC
T ss_pred             hHHeEEEeccHhhHHHHHHCCCEEEEECCCCccchh-ccHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999987443333 77899999999998764

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=99.90  E-value=6.8e-23  Score=150.29  Aligned_cols=130  Identities=24%  Similarity=0.340  Sum_probs=116.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++||+.++|+.|++.|++++++||+....+...+ +. |+..+|  +.+++++   .....||++..|+.++++++ 
T Consensus       107 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~-~l~~~f~~d~i~~~~---~~~~~kp~~~~~~~~~~~lg-  180 (243)
T 3qxg_A          107 EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERL-EH-NFPGMFHKELMVTAF---DVKYGKPNPEPYLMALKKGG-  180 (243)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTH-HH-HSTTTCCGGGEECTT---TCSSCTTSSHHHHHHHHHTT-
T ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HH-hHHHhcCcceEEeHH---hCCCCCCChHHHHHHHHHcC-
Confidence            4688999999999999999999999999877665554 44 899999  8899999   88999999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcC
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~  159 (166)
                       +++++|++|||+.+|+.+|+++|+.++++.++.....  ....++++++++.+|.+.|..
T Consensus       181 -~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~ad~v~~s~~el~~~l~~  240 (243)
T 3qxg_A          181 -LKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTLCDSWDT  240 (243)
T ss_dssp             -CCGGGEEEEECSHHHHHHHHHTTCEEEEECCSSSCHHHHHHTTCSEEESCHHHHHHHHHH
T ss_pred             -CCHHHeEEEeCCHHHHHHHHHCCCEEEEEeCCCCCHHHHHhcCCCEEECCHHHHHHHHHh
Confidence             9999999999999999999999999999999865544  234789999999999988754

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=99.89  E-value=1.4e-22  Score=148.28  Aligned_cols=130  Identities=27%  Similarity=0.417  Sum_probs=114.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++||+.++|+.|++.|++++++||+....+...+ +. |+..+|  +.+++++   .....||++.+|+.+++++| 
T Consensus       106 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~-~l~~~f~~~~~~~~~---~~~~~kp~~~~~~~~~~~lg-  179 (247)
T 3dv9_A          106 KAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRL-NH-NFPGIFQANLMVTAF---DVKYGKPNPEPYLMALKKGG-  179 (247)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHH-HH-HSTTTCCGGGEECGG---GCSSCTTSSHHHHHHHHHHT-
T ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHH-Hh-hHHHhcCCCeEEecc---cCCCCCCCCHHHHHHHHHcC-
Confidence            4688999999999999999999999999877665555 44 899999  8999999   88999999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcC
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~  159 (166)
                       +++++|++|||+.+|+.+|+++|+.++++.++.....  ....++++++++.++.++|.+
T Consensus       180 -~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~ad~v~~~~~el~~~l~~  239 (247)
T 3dv9_A          180 -FKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLLFHSMPDFNKNWET  239 (247)
T ss_dssp             -CCGGGEEEEECSHHHHHHHHHTTSEEEEECCSSSCHHHHHTTTCSEEESSHHHHHHHHHH
T ss_pred             -CChhheEEEeCCHHHHHHHHHCCCeEEEEcCCCCCHHHHHhcCCCEEECCHHHHHHHHHH
Confidence             9999999999999999999999999999999865544  234789999999999888754

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=99.89  E-value=1.9e-22  Score=146.22  Aligned_cols=133  Identities=18%  Similarity=0.214  Sum_probs=117.2

Q ss_pred             hhhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHH
Q psy6288          15 FDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        15 ~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~   94 (166)
                      ..+........++||+.++|+.|++. ++++++||+...      .+.+|+..+|+.+++++   .....||++.+|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~------l~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~  164 (230)
T 3vay_A           95 EVFLHGRHQVQIFPEVQPTLEILAKT-FTLGVITNGNAD------VRRLGLADYFAFALCAE---DLGIGKPDPAPFLEA  164 (230)
T ss_dssp             HHHHHHHTCCCBCTTHHHHHHHHHTT-SEEEEEESSCCC------GGGSTTGGGCSEEEEHH---HHTCCTTSHHHHHHH
T ss_pred             HHHHHhhccCccCcCHHHHHHHHHhC-CeEEEEECCchh------hhhcCcHHHeeeeEEcc---ccCCCCcCHHHHHHH
Confidence            33334445678999999999999998 999999999855      34569999999999999   889999999999999


Q ss_pred             HHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288          95 AKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ++++|  +++++|++|||+. +|+.+|+++|+.++++.++.........++++++++.++.++|.+
T Consensus       165 ~~~~~--~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~l~el~~~l~~  228 (230)
T 3vay_A          165 LRRAK--VDASAAVHVGDHPSDDIAGAQQAGMRAIWYNPQGKAWDADRLPDAEIHNLSQLPEVLAR  228 (230)
T ss_dssp             HHHHT--CCGGGEEEEESCTTTTHHHHHHTTCEEEEECTTCCCCCSSSCCSEEESSGGGHHHHHHT
T ss_pred             HHHhC--CCchheEEEeCChHHHHHHHHHCCCEEEEEcCCCCCCcccCCCCeeECCHHHHHHHHHh
Confidence            99999  9999999999998 999999999999999999876544467889999999999998865

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.89  E-value=2.3e-22  Score=146.27  Aligned_cols=132  Identities=15%  Similarity=0.146  Sum_probs=115.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  +
T Consensus        93 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--~  166 (232)
T 1zrn_A           93 RLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVV-SHAGLRDGFDHLLSVD---PVQVYKPDNRVYELAEQALG--L  166 (232)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEESG---GGTCCTTSHHHHHHHHHHHT--S
T ss_pred             cCCCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HhcChHhhhheEEEec---ccCCCCCCHHHHHHHHHHcC--C
Confidence            4678999999999999999999999999877665555 4579999999999999   88899999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ++++|++|||+.+|+.+|+++|+.++++.++....+ ....++++++++.++.++|...
T Consensus       167 ~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~  225 (232)
T 1zrn_A          167 DRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVELFETA  225 (232)
T ss_dssp             CGGGEEEEESCHHHHHHHHHHTCCEEEECTTCCCCCSSSCCCSEEESSHHHHHTTC---
T ss_pred             CcccEEEEeCCHHHHHHHHHcCCEEEEEcCCCCCccccCCCCCEEECCHHHHHHHHHhh
Confidence            999999999999999999999999999998754433 3457899999999998877543

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.89  E-value=3.4e-22  Score=143.19  Aligned_cols=133  Identities=23%  Similarity=0.243  Sum_probs=116.9

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      .....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|  +.+++++   . ...||++.+++.+++++
T Consensus        66 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~i~~~~---~-~~~kp~~~~~~~~~~~~  140 (205)
T 3m9l_A           66 AQGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTL-EAIGLADCFAEADVLGRD---E-APPKPHPGGLLKLAEAW  140 (205)
T ss_dssp             EEEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGSCGGGEECTT---T-SCCTTSSHHHHHHHHHT
T ss_pred             hhcCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHH-HHcCchhhcCcceEEeCC---C-CCCCCCHHHHHHHHHHc
Confidence            345688999999999999999999999999987775555 557999999  7888777   4 78999999999999999


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCC
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPP  162 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  162 (166)
                      +  +++++|++|||+.+|+.+|+++|+.++++.++..  .....++++++++.+|.+.+...++
T Consensus       141 g--~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~--~~~~~ad~v~~~~~el~~~~~~~~~  200 (205)
T 3m9l_A          141 D--VSPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPDN--PWPELTDWHARDCAQLRDLLSAEGH  200 (205)
T ss_dssp             T--CCGGGEEEEESSHHHHHHHHHHTCEEEECSSSSC--SCGGGCSEECSSHHHHHHHHHHTTC
T ss_pred             C--CCHHHEEEECCCHHHHHHHHHcCCEEEEEeCCCC--cccccCCEEeCCHHHHHHHHHhccc
Confidence            9  9999999999999999999999999999998863  2335689999999999999886664

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.89  E-value=1.2e-22  Score=145.76  Aligned_cols=124  Identities=15%  Similarity=0.196  Sum_probs=105.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|+++|++++|+||...... ..+   .+  .+|+.+++++   +....||+|.+|..++++++  +.
T Consensus        35 ~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~-~~~---~~--~~~d~v~~~~---~~~~~KP~p~~~~~a~~~l~--~~  103 (196)
T 2oda_A           35 AQLTPGAQNALKALRDQGMPCAWIDELPEALS-TPL---AA--PVNDWMIAAP---RPTAGWPQPDACWMALMALN--VS  103 (196)
T ss_dssp             GSBCTTHHHHHHHHHHHTCCEEEECCSCHHHH-HHH---HT--TTTTTCEECC---CCSSCTTSTHHHHHHHHHTT--CS
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEcCChHHHH-HHh---cC--ccCCEEEECC---cCCCCCCChHHHHHHHHHcC--CC
Confidence            36799999999999999999999999987655 222   23  5689999999   88899999999999999999  86


Q ss_pred             C-CceEEEecCHhHHHHHHHcCCeEEEecCCCCC-----------------------cc--cccccchhhCChhhhhhhh
Q psy6288         104 P-SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP-----------------------KH--RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       104 ~-~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~-----------------------~~--~~~~~~~~~~~~~~l~~~l  157 (166)
                      + ++|+||||+.+|+.+|+++|+.+|+|.++...                       ..  ....++++++++.+|.++|
T Consensus       104 ~~~~~v~VGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~d~vi~~~~eL~~~l  183 (196)
T 2oda_A          104 QLEGCVLISGDPRLLQSGLNAGLWTIGLASCGPLCGLSPSQWQALNNAEREQRRAQATLKLYSLGVHSVIDHLGELESCL  183 (196)
T ss_dssp             CSTTCEEEESCHHHHHHHHHHTCEEEEESSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTCSEEESSGGGHHHHH
T ss_pred             CCccEEEEeCCHHHHHHHHHCCCEEEEEccCCccccccHHHhhhcchhhhhhhHHHHHHHHHHcCCCEEeCCHHHHHHHH
Confidence            5 89999999999999999999999999998642                       00  1246889999999998876


Q ss_pred             c
Q psy6288         158 Y  158 (166)
Q Consensus       158 ~  158 (166)
                      .
T Consensus       184 ~  184 (196)
T 2oda_A          184 A  184 (196)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=99.89  E-value=2.6e-22  Score=143.95  Aligned_cols=129  Identities=16%  Similarity=0.176  Sum_probs=113.1

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+++ ++++++||+....+...+ +.+|+..+|+.+++++   +.+..||++..++.++++++  
T Consensus        80 ~~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~KP~~~~~~~~~~~~~--  152 (209)
T 2hdo_A           80 DQIELYPGITSLFEQLPSE-LRLGIVTSQRRNELESGM-RSYPFMMRMAVTISAD---DTPKRKPDPLPLLTALEKVN--  152 (209)
T ss_dssp             GGCEECTTHHHHHHHSCTT-SEEEEECSSCHHHHHHHH-TTSGGGGGEEEEECGG---GSSCCTTSSHHHHHHHHHTT--
T ss_pred             ccCCcCCCHHHHHHHHHhc-CcEEEEeCCCHHHHHHHH-HHcChHhhccEEEecC---cCCCCCCCcHHHHHHHHHcC--
Confidence            4578899999999999999 999999999877665554 5579999999999998   88899999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.++....+....++++++++.++.++|
T Consensus       153 ~~~~~~i~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~a~~~~~~~~el~~~l  208 (209)
T 2hdo_A          153 VAPQNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRFQKPLDILELF  208 (209)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEEGGGCCTTGGGSCCSEEESSGGGGGGGC
T ss_pred             CCcccEEEECCChhhHHHHHHcCCeEEEEcCCCCChhhhccCCEEeCCHHHHHHhh
Confidence            99999999999999999999999999999988654332223899999999998764

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.89  E-value=1.3e-21  Score=144.08  Aligned_cols=130  Identities=16%  Similarity=0.193  Sum_probs=114.6

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++   .....||++..|..++++++  
T Consensus       111 ~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~gl~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--  184 (243)
T 2hsz_A          111 NISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPIL-TAFGIDHLFSEMLGGQ---SLPEIKPHPAPFYYLCGKFG--  184 (243)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECTT---TSSSCTTSSHHHHHHHHHHT--
T ss_pred             ccCccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHH-HHcCchheEEEEEecc---cCCCCCcCHHHHHHHHHHhC--
Confidence            34678999999999999999999999999977665554 5579999999999998   88889999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc-c-cccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK-H-RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~-~-~~~~~~~~~~~~~~l~~~l  157 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.++.... . ....++++++++.++..++
T Consensus       185 ~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~vi~~~~el~~~l  242 (243)
T 2hsz_A          185 LYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILKIT  242 (243)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEESSSCSTTCCGGGGCCSEEESSGGGGGGGT
T ss_pred             cChhhEEEEcCCHHHHHHHHHCCCeEEEEcCCCCchhhhhhCCCCEEECCHHHHHHHh
Confidence            999999999999999999999999999999985432 2 3567899999999998765

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=149.08  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++.|++++|+||.... +. .+.+.+|+..+|+.+++++   .....||++.+|+.++++++  ++
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~-~~-~~l~~~gl~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~g--~~  177 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDRR-LE-GILGGLGLREHFDFVLTSE---AAGWPKPDPRIFQEALRLAH--ME  177 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCTT-HH-HHHHHTTCGGGCSCEEEHH---HHSSCTTSHHHHHHHHHHHT--CC
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcHH-HH-HHHHhCCcHHhhhEEEeec---ccCCCCCCHHHHHHHHHHcC--CC
Confidence            478999999999999999999999998754 53 4445579999999999999   88999999999999999999  99


Q ss_pred             CCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc---cccccchhhCChhhhhhhhcC
Q psy6288         104 PSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH---RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++|+||||++ +|+.+|+++|+.++++.++.....   ....++++++++.++.++|.+
T Consensus       178 ~~~~~~vGD~~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~~~~ad~v~~~l~el~~~l~~  237 (263)
T 3k1z_A          178 PVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPALDC  237 (263)
T ss_dssp             GGGEEEEESCHHHHTHHHHTTTCEEEEECCSSCCCHHHHHHSCGGGEESSGGGHHHHHHH
T ss_pred             HHHEEEECCCcHHHHHHHHHCCCEEEEEcCCCCCchhhcccCCCceEeCCHHHHHHHHHH
Confidence            99999999998 999999999999999999864433   334789999999999988764

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=99.89  E-value=7.2e-22  Score=147.44  Aligned_cols=126  Identities=13%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh--hcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR--HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~--~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      ....++||+.++|+.|+++|++++|+||++...+...+..  ..|+..+|+.+++++    +. +||+|.+|+.++++++
T Consensus       127 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~~~fd~i~~~~----~~-~KP~p~~~~~~~~~lg  201 (261)
T 1yns_A          127 MKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTK----IG-HKVESESYRKIADSIG  201 (261)
T ss_dssp             CCBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCGGGCSEEECGG----GC-CTTCHHHHHHHHHHHT
T ss_pred             cccccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChHhhccEEEecC----CC-CCCCHHHHHHHHHHhC
Confidence            3468999999999999999999999999998766555433  246999999998775    45 9999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc-c-cccccchhhCChhhhh
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK-H-RTEAADLVLNSLEEFK  154 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~-~-~~~~~~~~~~~~~~l~  154 (166)
                        ++|++|+||||+.+|+.+|+++|+.+++|.++.... . ....++++++++.++.
T Consensus       202 --~~p~~~l~VgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~i~~l~el~  256 (261)
T 1yns_A          202 --CSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSELY  256 (261)
T ss_dssp             --SCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTCCCCCHHHHHHSCEESSGGGCB
T ss_pred             --cCcccEEEEcCCHHHHHHHHHCCCEEEEEeCCCCCcccccccCCCEEECCHHHhC
Confidence              999999999999999999999999999998764332 2 2356889999999874

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.6e-22  Score=147.12  Aligned_cols=132  Identities=23%  Similarity=0.267  Sum_probs=115.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  +
T Consensus        92 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~g--~  165 (241)
T 2hoq_A           92 YLREVPGARKVLIRLKELGYELGIITDGNPVKQWEKI-LRLELDDFFEHVIISD---FEGVKKPHPKIFKKALKAFN--V  165 (241)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHH-HHTTCGGGCSEEEEGG---GGTCCTTCHHHHHHHHHHHT--C
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHH-HHcCcHhhccEEEEeC---CCCCCCCCHHHHHHHHHHcC--C
Confidence            3568999999999999999999999999877665554 5579999999999999   88999999999999999999  9


Q ss_pred             CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccc---cccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRT---EAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ++++|++|||+. +|+.+|+++|+.++++.++.......   ..++++++++.++.++|.+.
T Consensus       166 ~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~l~~~  227 (241)
T 2hoq_A          166 KPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEVLARE  227 (241)
T ss_dssp             CGGGEEEEESCTTTTHHHHHHTTCEEEEECCSCCCHHHHTTGGGCSEEESSTTHHHHHHHHC
T ss_pred             CcccEEEECCCchHhHHHHHHCCCEEEEECCCCCCcccccccCCCCEEECCHHHHHHHHHHH
Confidence            999999999998 99999999999999998876443322   37899999999999887654

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.88  E-value=2.8e-22  Score=145.19  Aligned_cols=131  Identities=19%  Similarity=0.259  Sum_probs=108.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEecCCC---------C
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVLGSAD---------P   79 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~~~~~---------~   79 (166)
                      ..++||+.++|++|+++|++++|+||+..               ..+...+ +.+|+.  |+.++.+...         .
T Consensus        49 ~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--f~~~~~~~~~~~~~~~~~~~  125 (211)
T 2gmw_A           49 FEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSL-ADRDVD--LDGIYYCPHHPQGSVEEFRQ  125 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHH-HHTTCC--CSEEEEECCBTTCSSGGGBS
T ss_pred             CcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHH-HHcCCc--eEEEEECCcCCCCcccccCc
Confidence            47899999999999999999999999993               4454444 446886  7776644200         1


Q ss_pred             CccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE-EEecCCCCCcc-cccccchhhCChhhhhhhh
Q psy6288          80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC-VMVPDPTVPKH-RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        80 ~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~-i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l  157 (166)
                      ....+||++.+|+.++++++  +++++|+||||+.+|+.+|+++|+.+ ++|.++....+ ....++++++++.++.+++
T Consensus       126 ~~~~~KP~p~~~~~~~~~lg--i~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~~~~~~~~~~~d~vi~~l~el~~~l  203 (211)
T 2gmw_A          126 VCDCRKPHPGMLLSARDYLH--IDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAI  203 (211)
T ss_dssp             CCSSSTTSCHHHHHHHHHHT--BCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHHCSEEESCGGGHHHHH
T ss_pred             cCcCCCCCHHHHHHHHHHcC--CCHHHEEEEcCCHHHHHHHHHCCCceEEEEecCCCccccccCCCCEEeCCHHHHHHHH
Confidence            46779999999999999999  99999999999999999999999999 99999865433 3356899999999999987


Q ss_pred             cC
Q psy6288         158 YG  159 (166)
Q Consensus       158 ~~  159 (166)
                      ..
T Consensus       204 ~~  205 (211)
T 2gmw_A          204 KK  205 (211)
T ss_dssp             HC
T ss_pred             Hh
Confidence            65

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=99.88  E-value=2.5e-22  Score=148.51  Aligned_cols=134  Identities=29%  Similarity=0.384  Sum_probs=118.5

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccce-EEecCCCCCcc-CCCCChHHHHHHHHHcC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH-VVLGSADPEVK-QGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~-v~~~~~~~~~~-~~Kp~~~~~~~~~~~~~   99 (166)
                      ....++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+. +++++   ... ..||++..|+.++++++
T Consensus       107 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~i~~~~---~~~~~~Kp~~~~~~~~~~~lg  182 (259)
T 4eek_A          107 TGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKL-RVAGLTELAGEHIYDPS---WVGGRGKPHPDLYTFAAQQLG  182 (259)
T ss_dssp             TTCEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHH-HHTTCHHHHCSCEECGG---GGTTCCTTSSHHHHHHHHHTT
T ss_pred             ccCCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HhcChHhhccceEEeHh---hcCcCCCCChHHHHHHHHHcC
Confidence            56789999999999999999999999999987775555 55799999999 99998   888 99999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC----cc--cccccchhhCChhhhhhhhcCCC
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP----KH--RTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~----~~--~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                        +++++|++|||+.+|+.+|+++|+.++++.++...    .+  ....++++++++.++.++|....
T Consensus       183 --i~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~ad~vi~~l~el~~~l~~~~  248 (259)
T 4eek_A          183 --ILPERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLGAARVLTSHAELRAALAEAG  248 (259)
T ss_dssp             --CCGGGEEEEESSHHHHHHHHHHTCEEEEECCTTSCCSSCHHHHHHHTCSEEECSHHHHHHHHHHTT
T ss_pred             --CCHHHEEEEcCCHHHHHHHHHCCCEEEEEccCCCcccccHHHHHhcCcchhhCCHHHHHHHHHhcc
Confidence              99999999999999999999999999999988544    22  33568999999999999987543

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.88  E-value=6.4e-22  Score=147.42  Aligned_cols=131  Identities=21%  Similarity=0.339  Sum_probs=113.2

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++ +++++|+||++...+...+ +.+|+..+|+.+++++   +....||+|.+|+.++++++  
T Consensus       118 ~~~~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l-~~~gl~~~f~~i~~~~---~~~~~KP~p~~~~~~~~~~~--  190 (260)
T 2gfh_A          118 QHMILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKI-EACACQSYFDAIVIGG---EQKEEKPAPSIFYHCCDLLG--  190 (260)
T ss_dssp             HTCCCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHH-HHHTCGGGCSEEEEGG---GSSSCTTCHHHHHHHHHHHT--
T ss_pred             hcCCCCcCHHHHHHHHHc-CCcEEEEECcChHHHHHHH-HhcCHHhhhheEEecC---CCCCCCCCHHHHHHHHHHcC--
Confidence            357899999999999998 5999999999987765555 4579999999999999   88899999999999999999  


Q ss_pred             CCCCceEEEecC-HhHHHHHHHcCC-eEEEecCCCCCcc-cccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDA-PNGVLGAKAAGM-SCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~-~~Di~~a~~~G~-~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ++|++|+||||+ .+|+.+|+++|+ .++++.++..... ....++++++++.++.+++..
T Consensus       191 ~~~~~~~~vGDs~~~Di~~A~~aG~~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~l~~  251 (260)
T 2gfh_A          191 VQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQS  251 (260)
T ss_dssp             CCGGGEEEEESCTTTHHHHHHHTTCSEEEEECTTCCCCSSCCCCCSEEESSGGGHHHHHHH
T ss_pred             CChhhEEEECCCchhhHHHHHHCCCceEEEEcCCCCCcCcccCCCCEEECCHHHHHHHHHH
Confidence            999999999995 899999999999 8999987643322 345788999999999887653

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.88  E-value=1.2e-21  Score=142.38  Aligned_cols=130  Identities=19%  Similarity=0.219  Sum_probs=116.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+ .|++++++||+........+ +.+|+..+|+.+++++   .....||++.+|+.+++++|  
T Consensus       104 ~~~~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~lg--  176 (240)
T 3qnm_A          104 TKSGLMPHAKEVLEYLA-PQYNLYILSNGFRELQSRKM-RSAGVDRYFKKIILSE---DLGVLKPRPEIFHFALSATQ--  176 (240)
T ss_dssp             GCCCBSTTHHHHHHHHT-TTSEEEEEECSCHHHHHHHH-HHHTCGGGCSEEEEGG---GTTCCTTSHHHHHHHHHHTT--
T ss_pred             hcCCcCccHHHHHHHHH-cCCeEEEEeCCchHHHHHHH-HHcChHhhceeEEEec---cCCCCCCCHHHHHHHHHHcC--
Confidence            35788999999999999 89999999999877775555 4569999999999999   88999999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++++|++|||++ +|+.+|+++|+.++++.++.. ......|+++++++.|+.++..+
T Consensus       177 i~~~~~~~iGD~~~~Di~~a~~aG~~~~~~~~~~~-~~~~~~~d~vi~sl~e~~~~~~~  234 (240)
T 3qnm_A          177 SELRESLMIGDSWEADITGAHGVGMHQAFYNVTER-TVFPFQPTYHIHSLKELMNLLEG  234 (240)
T ss_dssp             CCGGGEEEEESCTTTTHHHHHHTTCEEEEECCSCC-CCCSSCCSEEESSTHHHHHHTC-
T ss_pred             CCcccEEEECCCchHhHHHHHHcCCeEEEEcCCCC-CCcCCCCceEECCHHHHHHHHhc
Confidence            9999999999997 999999999999999999865 33456899999999999998654

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.88  E-value=1e-21  Score=145.87  Aligned_cols=131  Identities=18%  Similarity=0.218  Sum_probs=115.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc-cceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL-FHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~-fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ...++||+.++|+.|++.|++++++||+....+...+ +.+|+..+ |+.+++++   .....||++.+|+.+++++|  
T Consensus       109 ~~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l-~~~~~~~~~~~~~~~~~---~~~~~kp~~~~~~~~~~~lg--  182 (277)
T 3iru_A          109 RSQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPAL-IAAKEQGYTPASTVFAT---DVVRGRPFPDMALKVALELE--  182 (277)
T ss_dssp             TCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHHHTTCCCSEEECGG---GSSSCTTSSHHHHHHHHHHT--
T ss_pred             cCccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHH-HhcCcccCCCceEecHH---hcCCCCCCHHHHHHHHHHcC--
Confidence            4688999999999999999999999999977665554 44688888 89999999   88999999999999999999  


Q ss_pred             CCC-CceEEEecCHhHHHHHHHcCCeEEEecCCCCC-----------------------cc--cccccchhhCChhhhhh
Q psy6288         102 PQP-SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP-----------------------KH--RTEAADLVLNSLEEFKP  155 (166)
Q Consensus       102 ~~~-~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~-----------------------~~--~~~~~~~~~~~~~~l~~  155 (166)
                      +++ ++|++|||+.+|+.+|+++|+.+++|.+|...                       ..  ....++++++++.+|.+
T Consensus       183 i~~~~~~i~vGD~~~Di~~a~~aG~~~v~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el~~  262 (277)
T 3iru_A          183 VGHVNGCIKVDDTLPGIEEGLRAGMWTVGVSCSGNEVGLDREDWQALSSDEQQSYRQHAEQRLFNAGAHYVIDSVADLET  262 (277)
T ss_dssp             CSCGGGEEEEESSHHHHHHHHHTTCEEEEECSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHHTCSEEESSGGGTHH
T ss_pred             CCCCccEEEEcCCHHHHHHHHHCCCeEEEEecCCcccccchhhhhhcchhhhhhhhhhhHHHHhhCCCCEEecCHHHHHH
Confidence            999 99999999999999999999999999999641                       11  23468999999999998


Q ss_pred             hhcC
Q psy6288         156 ELYG  159 (166)
Q Consensus       156 ~l~~  159 (166)
                      +|..
T Consensus       263 ~l~~  266 (277)
T 3iru_A          263 VITD  266 (277)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.88  E-value=1.2e-21  Score=142.03  Aligned_cols=131  Identities=15%  Similarity=0.211  Sum_probs=114.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ..++|++.++|+.|++.|++++++||+.   .......+ +.+|+..+|+.+++++   +....||++..|+.+++++| 
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~lg-  172 (235)
T 2om6_A           98 SLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLL-ERFGLMEFIDKTFFAD---EVLSYKPRKEMFEKVLNSFE-  172 (235)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHH-HHTTCGGGCSEEEEHH---HHTCCTTCHHHHHHHHHHTT-
T ss_pred             cCcCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHH-HhCCcHHHhhhheecc---ccCCCCCCHHHHHHHHHHcC-
Confidence            3569999999999999999999999998   77665554 4569999999999998   88899999999999999999 


Q ss_pred             CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288         101 KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       101 ~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                       +++++|++|||+. +|+.+|+++|+.++++.++....+....++++++++.++.++|..+
T Consensus       173 -i~~~~~~~iGD~~~nDi~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~  232 (235)
T 2om6_A          173 -VKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGFEIPSIANLKDVIELI  232 (235)
T ss_dssp             -CCGGGEEEEESCTTTTHHHHHHTTSEEEEECTTCCSCEEEETTEEEESSGGGHHHHHHHT
T ss_pred             -CCccceEEECCChHHHHHHHHHCCCEEEEECCCCCCcccCCCCcchHhhHHHHHHHHHHH
Confidence             9999999999999 9999999999999999988533334455789999999999887654

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.87  E-value=3.8e-22  Score=144.97  Aligned_cols=135  Identities=17%  Similarity=0.187  Sum_probs=110.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEecC-CC--------C
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVLGS-AD--------P   79 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~~~-~~--------~   79 (166)
                      ..++||+.++|++|+++|++++|+||++.               ..+...+ +.+|+.  |+.++.+. ..        .
T Consensus        55 ~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--~~~~~~~~~~~~g~~~~~~~  131 (218)
T 2o2x_A           55 IVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELL-REEGVF--VDMVLACAYHEAGVGPLAIP  131 (218)
T ss_dssp             CCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHH-HHTTCC--CSEEEEECCCTTCCSTTCCS
T ss_pred             CeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHH-HHcCCc--eeeEEEeecCCCCceeeccc
Confidence            67899999999999999999999999987               4454444 445764  56544331 00        1


Q ss_pred             CccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE-EEecCCCCCcc-cccccchhhCChhhhhhhh
Q psy6288          80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC-VMVPDPTVPKH-RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        80 ~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~-i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l  157 (166)
                      ....+||++.+|+.++++++  +++++|+||||+.+|+.+|+++|+.+ ++|.+|....+ ....++++++++.++.+.+
T Consensus       132 ~~~~~KP~~~~~~~~~~~~~--i~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~~~~~~~~~~~~~~i~~l~el~~~l  209 (218)
T 2o2x_A          132 DHPMRKPNPGMLVEAGKRLA--LDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQPGFAIRPLRDSSELGDLLAAI  209 (218)
T ss_dssp             SCTTSTTSCHHHHHHHHHHT--CCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCCEEETTEEEEEESSHHHHHHHHHHH
T ss_pred             CCccCCCCHHHHHHHHHHcC--CCHHHEEEEeCCHHHHHHHHHCCCCEeEEEecCCCCcccccCCCCEecccHHHHHHHH
Confidence            56789999999999999999  99999999999999999999999999 99999865443 3457899999999999988


Q ss_pred             cCCCCC
Q psy6288         158 YGLPPF  163 (166)
Q Consensus       158 ~~~~~~  163 (166)
                      ..+...
T Consensus       210 ~~~~~~  215 (218)
T 2o2x_A          210 ETLGRD  215 (218)
T ss_dssp             HHTCCC
T ss_pred             HHHhcc
Confidence            766543

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.87  E-value=3.1e-21  Score=140.17  Aligned_cols=127  Identities=20%  Similarity=0.320  Sum_probs=111.3

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  
T Consensus       100 ~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~i~~~~---~~~~~Kp~~~~~~~~~~~lg--  173 (231)
T 3kzx_A          100 DNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEI-HHKNLTHYFDSIIGSG---DTGTIKPSPEPVLAALTNIN--  173 (231)
T ss_dssp             CCCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEET---SSSCCTTSSHHHHHHHHHHT--
T ss_pred             ccceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHCCchhheeeEEccc---ccCCCCCChHHHHHHHHHcC--
Confidence            45789999999999999999999999999887775555 5579999999999999   89999999999999999999  


Q ss_pred             CCCC-ceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288         102 PQPS-KCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~-~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ++++ +|++|||+.+|+.+|+++|+.++++..+..     ..++++++++.++.++|.+
T Consensus       174 i~~~~~~v~vGD~~~Di~~a~~aG~~~v~~~~~~~-----~~~~~~~~~~~el~~~l~~  227 (231)
T 3kzx_A          174 IEPSKEVFFIGDSISDIQSAIEAGCLPIKYGSTNI-----IKDILSFKNFYDIRNFICQ  227 (231)
T ss_dssp             CCCSTTEEEEESSHHHHHHHHHTTCEEEEECC----------CCEEESSHHHHHHHHHH
T ss_pred             CCcccCEEEEcCCHHHHHHHHHCCCeEEEECCCCC-----CCCceeeCCHHHHHHHHHH
Confidence            9999 999999999999999999999999966532     4667899999999988754

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=99.87  E-value=6.6e-21  Score=138.47  Aligned_cols=133  Identities=19%  Similarity=0.265  Sum_probs=118.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++. ++++++||+....+...+ +.+|+..+|+.+++++   .....||++.+|+.+++++|. +
T Consensus       101 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~g~-~  174 (238)
T 3ed5_A          101 GHQLIDGAFDLISNLQQQ-FDLYIVTNGVSHTQYKRL-RDSGLFPFFKDIFVSE---DTGFQKPMKEYFNYVFERIPQ-F  174 (238)
T ss_dssp             CCCBCTTHHHHHHHHHTT-SEEEEEECSCHHHHHHHH-HHTTCGGGCSEEEEGG---GTTSCTTCHHHHHHHHHTSTT-C
T ss_pred             cCCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHH-HHcChHhhhheEEEec---ccCCCCCChHHHHHHHHHcCC-C
Confidence            468899999999999999 999999999987775555 4469999999999999   889999999999999999972 5


Q ss_pred             CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCC
Q psy6288         103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus       103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                      ++++|++|||+. +|+.+|+++|+.++++.++.........++++++++.++.++|.+..
T Consensus       175 ~~~~~i~vGD~~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~ad~v~~~~~el~~~l~~~~  234 (238)
T 3ed5_A          175 SAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIEN  234 (238)
T ss_dssp             CGGGEEEEESCTTTTHHHHHHTTCEEEEECTTCCCCTTCCCCSEEESSGGGHHHHHTCCC
T ss_pred             ChhHeEEECCCcHHHHHHHHHCCCEEEEECCCCCCCcccCCCCeEECCHHHHHHHHHhhc
Confidence            799999999998 99999999999999999886555556788999999999999987654

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.87  E-value=5.2e-22  Score=144.12  Aligned_cols=131  Identities=18%  Similarity=0.222  Sum_probs=118.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++|++.++|+.|++. ++++++||+....+...+ +.+|+..+|+.+++++   .....||++.+++.+++++|  +
T Consensus        98 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~~~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--~  170 (234)
T 3u26_A           98 YGELYPEVVEVLKSLKGK-YHVGMITDSDTEQAMAFL-DALGIKDLFDSITTSE---EAGFFKPHPRIFELALKKAG--V  170 (234)
T ss_dssp             HCCBCTTHHHHHHHHTTT-SEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEHH---HHTBCTTSHHHHHHHHHHHT--C
T ss_pred             hCCcCcCHHHHHHHHHhC-CcEEEEECCCHHHHHHHH-HHcCcHHHcceeEecc---ccCCCCcCHHHHHHHHHHcC--C
Confidence            467899999999999999 999999999987665555 5579999999999999   88899999999999999999  9


Q ss_pred             CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ++++|++|||+. +|+.+|+++|+.++++.++....+....++++++++.++.++|.++
T Consensus       171 ~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~a~~~~~~~~el~~~l~~~  229 (234)
T 3u26_A          171 KGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDEL  229 (234)
T ss_dssp             CGGGEEEEESCTTTTHHHHHTTTCEEEEECSSSTTGGGGGGCSEEESSTHHHHHHHHHH
T ss_pred             CchhEEEEcCCcHHHHHHHHHcCCEEEEECCCCCccccccCCCEeeCCHHHHHHHHHHH
Confidence            999999999998 9999999999999999999666655568999999999999988654

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=99.87  E-value=1e-21  Score=142.81  Aligned_cols=118  Identities=35%  Similarity=0.507  Sum_probs=93.3

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      .++||+.++|+.|++.|++++|+||+..  .. .+.+.+|+..+|+.+++++   .....||++.+|+.+++++|  +++
T Consensus        92 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~-~~l~~~gl~~~f~~i~~~~---~~~~~Kp~~~~~~~~~~~lg--i~~  163 (233)
T 3nas_A           92 DLLPGIGRLLCQLKNENIKIGLASSSRN--AP-KILRRLAIIDDFHAIVDPT---TLAKGKPDPDIFLTAAAMLD--VSP  163 (233)
T ss_dssp             GSCTTHHHHHHHHHHTTCEEEECCSCTT--HH-HHHHHTTCTTTCSEECCC------------CCHHHHHHHHHT--SCG
T ss_pred             CcCcCHHHHHHHHHHCCCcEEEEcCchh--HH-HHHHHcCcHhhcCEEeeHh---hCCCCCCChHHHHHHHHHcC--CCH
Confidence            3799999999999999999999999864  43 4445579999999999999   88899999999999999999  999


Q ss_pred             CceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhh
Q psy6288         105 SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFK  154 (166)
Q Consensus       105 ~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~  154 (166)
                      ++|++|||+.+|+.+|+++|+.++++.++.   . ...++++++++.++.
T Consensus       164 ~~~i~vGDs~~Di~~a~~aG~~~~~~~~~~---~-~~~ad~v~~s~~el~  209 (233)
T 3nas_A          164 ADCAAIEDAEAGISAIKSAGMFAVGVGQGQ---P-MLGADLVVRQTSDLT  209 (233)
T ss_dssp             GGEEEEECSHHHHHHHHHTTCEEEECC-----------CSEECSSGGGCC
T ss_pred             HHEEEEeCCHHHHHHHHHcCCEEEEECCcc---c-cccCCEEeCChHhCC
Confidence            999999999999999999999999996652   2 237889999998886

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.87  E-value=3.8e-21  Score=142.06  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=114.3

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+  |++++|+||+....+...+ +.+|+..+|+.+++++   .....||++..|+.++++++  
T Consensus        90 ~~~~~~~~~~~~l~~l~--g~~~~i~t~~~~~~~~~~l-~~~gl~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--  161 (253)
T 1qq5_A           90 NRLTPYPDAAQCLAELA--PLKRAILSNGAPDMLQALV-ANAGLTDSFDAVISVD---AKRVFKPHPDSYALVEEVLG--  161 (253)
T ss_dssp             GSCCBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGG---GGTCCTTSHHHHHHHHHHHC--
T ss_pred             hcCCCCccHHHHHHHHc--CCCEEEEeCcCHHHHHHHH-HHCCchhhccEEEEcc---ccCCCCCCHHHHHHHHHHcC--
Confidence            34688999999999999  9999999999987775554 5569999999999999   88999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecC-----------------------CCCCc-ccccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD-----------------------PTVPK-HRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~-----------------------~~~~~-~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.+                       +.... .....++++++++.++..+|
T Consensus       162 ~~~~~~~~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l  241 (253)
T 1qq5_A          162 VTPAEVLFVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAPDFVVPALGDLPRLV  241 (253)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCEEEEECCSCHHHHHHHTTSSSCCHHHHHHHHHSSCCTTSCCCSEEESSGGGHHHHH
T ss_pred             CCHHHEEEEeCChhhHHHHHHCCCEEEEECCcccchhhhhcccccccccccccccccccCCCCCCCCeeeCCHHHHHHHH
Confidence            9999999999999999999999999999988                       32212 23457899999999999887


Q ss_pred             cCCC
Q psy6288         158 YGLP  161 (166)
Q Consensus       158 ~~~~  161 (166)
                      .++.
T Consensus       242 ~~~~  245 (253)
T 1qq5_A          242 RGMA  245 (253)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            6543

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.86  E-value=1.1e-20  Score=141.72  Aligned_cols=135  Identities=15%  Similarity=0.141  Sum_probs=112.3

Q ss_pred             cCCccchhHHHHHHHHHHCCC--CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-CccCCCCChHHHHHHHHHc
Q psy6288          22 LGYNLAIGALRLINHLHKHNI--PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~--~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ....++||+.++|+.|++.|+  +++|+||+....+...+ +.+|+..+|+.+++++... ....+||++.+|+.+++++
T Consensus       139 ~~~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l-~~~gl~~~fd~v~~~~~~~~~~~~~Kp~~~~~~~~~~~l  217 (282)
T 3nuq_A          139 DILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL-RLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKES  217 (282)
T ss_dssp             GTCCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHH-HHHTCTTSCSEEECCCCSSCSSCCCTTSHHHHHHHHHHH
T ss_pred             hccCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHH-HhCCcccccceEEEeccCCCcccCCCcCHHHHHHHHHHc
Confidence            347789999999999999999  99999999987775555 4569999999999886111 1256799999999999999


Q ss_pred             CCCCCC-CceEEEecCHhHHHHHHHcCC-eEEEecCCCCCcc--cccccchhhCChhhhhhhhcC
Q psy6288          99 DEKPQP-SKCLVFEDAPNGVLGAKAAGM-SCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        99 ~~~~~~-~~~i~IGD~~~Di~~a~~~G~-~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      |  +++ ++|++|||+.+|+.+|+++|+ .++++..+.....  ....++++++++.++.++|-.
T Consensus       218 g--i~~~~~~i~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~ad~vi~sl~el~~~l~~  280 (282)
T 3nuq_A          218 G--LARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSD  280 (282)
T ss_dssp             T--CCCGGGEEEEESCHHHHHHHHHHTCSEEEEECSCCC----CCCCTTCEEESSGGGGGGTSGG
T ss_pred             C--CCCcccEEEEcCCHHHHHHHHHCCCeEEEEEcCCccccccccCCCCCEEeCCHHHHHHHhhh
Confidence            9  998 999999999999999999999 6778877754432  345778999999999988754

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.86  E-value=4.7e-21  Score=136.82  Aligned_cols=128  Identities=15%  Similarity=0.230  Sum_probs=112.2

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.+ |+.|++. ++++|+||++...+...+ +.+|+..+|+.+++++   .....||++..|..++++++  
T Consensus        71 ~~~~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--  142 (201)
T 2w43_A           71 KNLKAYEDTKY-LKEISEI-AEVYALSNGSINEVKQHL-ERNGLLRYFKGIFSAE---SVKEYKPSPKVYKYFLDSIG--  142 (201)
T ss_dssp             HTCEECGGGGG-HHHHHHH-SEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGG---GGTCCTTCHHHHHHHHHHHT--
T ss_pred             cccccCCChHH-HHHHHhC-CeEEEEeCcCHHHHHHHH-HHCCcHHhCcEEEehh---hcCCCCCCHHHHHHHHHhcC--
Confidence            34788999999 9999999 999999999877665554 5579999999999998   88899999999999999998  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~  159 (166)
                        +++|++|||+.+|+.+|+++|+.++++.++....+ ....++++++++.++.++|..
T Consensus       143 --~~~~~~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~  199 (201)
T 2w43_A          143 --AKEAFLVSSNAFDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKELYEWILR  199 (201)
T ss_dssp             --CSCCEEEESCHHHHHHHHHTTCEEEEECSSSCCCCTTSCCCSEEESSHHHHHHHHHH
T ss_pred             --CCcEEEEeCCHHHhHHHHHCCCEEEEECCCCCCccccCCCCCEEECCHHHHHHHHHh
Confidence              89999999999999999999999999999754433 345789999999999887753

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.86  E-value=3.1e-20  Score=133.62  Aligned_cols=130  Identities=25%  Similarity=0.380  Sum_probs=115.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++|++.++|+.|++.|++++++|++....+...+ +.+|+..+|+.+++++   .....||++..++.++++++  +
T Consensus        92 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~~~~~~~~~~~~~---~~~~~kp~~~~~~~~~~~~~--i  165 (226)
T 1te2_A           92 TRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMFDLRDSFDALASAE---KLPYSKPHPQVYLDCAAKLG--V  165 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEECT---TSSCCTTSTHHHHHHHHHHT--S
T ss_pred             cCCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HhcCcHhhCcEEEecc---ccCCCCCChHHHHHHHHHcC--C
Confidence            4678999999999999999999999999877665444 5579999999999998   88889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~  158 (166)
                      ++++|++|||+.+|+.+|+.+|+.++++.++..... ....++++++++.++.+.++
T Consensus       166 ~~~~~i~iGD~~nDi~~a~~aG~~~~~~~~~~~~~~~~~~~a~~v~~~~~el~~~~~  222 (226)
T 1te2_A          166 DPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKDL  222 (226)
T ss_dssp             CGGGEEEEESSHHHHHHHHHTTCEEEECCCTTTTTCGGGGGSSEECSCGGGCCHHHH
T ss_pred             CHHHeEEEeCCHHHHHHHHHcCCEEEEEcCCCCcccccccccCeEECCHHHHhHHHh
Confidence            999999999999999999999999999999865443 45788999999999988665

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=99.86  E-value=1.8e-21  Score=152.37  Aligned_cols=136  Identities=20%  Similarity=0.216  Sum_probs=115.1

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCcc-----------CCCCChHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVK-----------QGKPAPDV   90 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~-----------~~Kp~~~~   90 (166)
                      ..++||+.++|+.|+++|++++|+||++...+...+. ++|+..+|+  .+++++   +..           .+||+|..
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~-~lgL~~~Fd~~~Ivs~d---dv~~~~~~~~~~kp~~KP~P~~  289 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFE-NLGLLPYFEADFIATAS---DVLEAENMYPQARPLGKPNPFS  289 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHH-HHTCGGGSCGGGEECHH---HHHHHHHHSTTSCCCCTTSTHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHH-HcCChHhcCCCEEEecc---cccccccccccccCCCCCCHHH
Confidence            4789999999999999999999999999887766654 469999999  888887   554           48999999


Q ss_pred             HHHHHHHcCC------------CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC---cc--cccccchhhCChhhh
Q psy6288          91 FLVAAKRFDE------------KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP---KH--RTEAADLVLNSLEEF  153 (166)
Q Consensus        91 ~~~~~~~~~~------------~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~---~~--~~~~~~~~~~~~~~l  153 (166)
                      |..++++++.            .++|++|+||||+.+|+.+|+++|+.+++|.++...   ..  ....++++++++.++
T Consensus       290 ~~~a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di~aAk~AG~~~I~V~~g~~~~~~~~~l~~~~ad~vi~sl~eL  369 (384)
T 1qyi_A          290 YIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGEL  369 (384)
T ss_dssp             HHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGH
T ss_pred             HHHHHHHcCCccccccccccccCCCCcCeEEEcCCHHHHHHHHHcCCEEEEECCCccccccHHHHhhcCCCEEECCHHHH
Confidence            9999999871            147999999999999999999999999999998642   12  134789999999999


Q ss_pred             hhhhcCCCCC
Q psy6288         154 KPELYGLPPF  163 (166)
Q Consensus       154 ~~~l~~~~~~  163 (166)
                      .+.+.+...-
T Consensus       370 ~~~l~~~~~~  379 (384)
T 1qyi_A          370 RGVLDNLLEH  379 (384)
T ss_dssp             HHHHSCTTTT
T ss_pred             HHHHHHHHhh
Confidence            9988766543

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.86  E-value=1.7e-21  Score=130.93  Aligned_cols=114  Identities=21%  Similarity=0.208  Sum_probs=100.2

Q ss_pred             hhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288          15 FDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        15 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~   93 (166)
                      .|+++.+. ...++||+.++|+.|++.|++++|+||++...+...+. .+|+..+|+.+++++   .....||++..|+.
T Consensus         7 ~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~-~~~l~~~f~~i~~~~---~~~~~Kp~~~~~~~   82 (137)
T 2pr7_A            7 VDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIR-ELETNGVVDKVLLSG---ELGVEKPEEAAFQA   82 (137)
T ss_dssp             ECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHH-HHHHTTSSSEEEEHH---HHSCCTTSHHHHHH
T ss_pred             EeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-HCChHhhccEEEEec---cCCCCCCCHHHHHH
Confidence            45556443 35589999999999999999999999998777655554 468999999999998   88889999999999


Q ss_pred             HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ++++++  +++++|+||||+.+|+.+|+++|+.++++.++.
T Consensus        83 ~~~~~~--~~~~~~~~vgD~~~di~~a~~~G~~~i~~~~~~  121 (137)
T 2pr7_A           83 AADAID--LPMRDCVLVDDSILNVRGAVEAGLVGVYYQQFD  121 (137)
T ss_dssp             HHHHTT--CCGGGEEEEESCHHHHHHHHHHTCEEEECSCHH
T ss_pred             HHHHcC--CCcccEEEEcCCHHHHHHHHHCCCEEEEeCChH
Confidence            999999  999999999999999999999999999997763

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.85  E-value=7e-21  Score=138.21  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=110.9

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHH---HHHc
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVA---AKRF   98 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~---~~~~   98 (166)
                      ....++||+.++|+.|++ |++++++||+....+...+ +.  +..+|+.+++++   +....||++..|+.+   ++++
T Consensus        96 ~~~~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~~~~~l-~~--l~~~fd~i~~~~---~~~~~KP~~~~~~~~l~~~~~l  168 (240)
T 3smv_A           96 KNWPAFPDTVEALQYLKK-HYKLVILSNIDRNEFKLSN-AK--LGVEFDHIITAQ---DVGSYKPNPNNFTYMIDALAKA  168 (240)
T ss_dssp             GGCCBCTTHHHHHHHHHH-HSEEEEEESSCHHHHHHHH-TT--TCSCCSEEEEHH---HHTSCTTSHHHHHHHHHHHHHT
T ss_pred             hcCCCCCcHHHHHHHHHh-CCeEEEEeCCChhHHHHHH-Hh--cCCccCEEEEcc---ccCCCCCCHHHHHHHHHHHHhc
Confidence            456899999999999999 8999999999987665554 32  668999999999   899999999999999   8999


Q ss_pred             CCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCC-------CCcc-cccccchhhCChhhhhhhhcC
Q psy6288          99 DEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPT-------VPKH-RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~-------~~~~-~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +  ++|++|++|||+. +|+.+|+++|+.++++..+.       .... ....++++++++.++.++|.+
T Consensus       169 g--i~~~~~~~vGD~~~~Di~~a~~aG~~~~~~~~~~~~~g~g~~~~~~~~~~ad~v~~~~~el~~~l~~  236 (240)
T 3smv_A          169 G--IEKKDILHTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGATHVPSRMPNVDFRFNSMGEMAEAHKQ  236 (240)
T ss_dssp             T--CCGGGEEEEESCTTTTHHHHHHHTCEEEEECTTCC-------CCCSSCCCCSEEESSHHHHHHHHHH
T ss_pred             C--CCchhEEEECCCchhhhHHHHHcCCeEEEEcCCCcccCCCCCCCCcCCCCCCEEeCCHHHHHHHHHH
Confidence            9  9999999999997 99999999999999998651       1122 447889999999999988764

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.7e-20  Score=135.45  Aligned_cols=125  Identities=15%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             cCCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          22 LGYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ....++||+.++|+.|++.| ++++++||+....+...+ +.+|+..+|+.++++.        ||++..++.+++++| 
T Consensus       102 ~~~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l-~~~~~~~~f~~~~~~~--------kpk~~~~~~~~~~lg-  171 (234)
T 3ddh_A          102 MPIELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKL-ERSGLSPYFDHIEVMS--------DKTEKEYLRLLSILQ-  171 (234)
T ss_dssp             CCCCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHH-HHHTCGGGCSEEEEES--------CCSHHHHHHHHHHHT-
T ss_pred             ccCCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHH-HHhCcHhhhheeeecC--------CCCHHHHHHHHHHhC-
Confidence            35688999999999999999 999999999877665555 4469999999998765        899999999999999 


Q ss_pred             CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCC----CCCcc-cccccchhhCChhhhhhhh
Q psy6288         101 KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDP----TVPKH-RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       101 ~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~----~~~~~-~~~~~~~~~~~~~~l~~~l  157 (166)
                       +++++|++|||++ +|+.+|+++|+.+++|..+    ....+ ....++++++++.|+.++|
T Consensus       172 -i~~~~~i~iGD~~~~Di~~a~~aG~~~v~v~~~~~~g~~~~~~~~~~~d~v~~~l~el~~~l  233 (234)
T 3ddh_A          172 -IAPSELLMVGNSFKSDIQPVLSLGGYGVHIPFEVMWKHEVTETFAHERLKQVKRLDDLLSLL  233 (234)
T ss_dssp             -CCGGGEEEEESCCCCCCHHHHHHTCEEEECCCCTTCCCC---CCCCTTEEECSSGGGHHHHC
T ss_pred             -CCcceEEEECCCcHHHhHHHHHCCCeEEEecCCcccccCCcccccCCCceecccHHHHHHhc
Confidence             9999999999997 9999999999999999544    33333 2334499999999998875

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.85  E-value=2.1e-20  Score=132.56  Aligned_cols=124  Identities=14%  Similarity=0.161  Sum_probs=111.7

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++|++.++|+.|++.|++++++|++...... .+ +.+++..+|+.+++++   .....||++..+..++++++  
T Consensus        82 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~-~~~~~~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--  154 (207)
T 2go7_A           82 AQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-IL-KDLGVESYFTEILTSQ---SGFVRKPSPEAATYLLDKYQ--  154 (207)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HH-HHHTCGGGEEEEECGG---GCCCCTTSSHHHHHHHHHHT--
T ss_pred             ccceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HH-HHcCchhheeeEEecC---cCCCCCCCcHHHHHHHHHhC--
Confidence            34678999999999999999999999999877765 44 5569999999999998   78889999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +++++|++|||+.+|+.+|+.+|+.++++.++. .     .++++++++.++.++|.
T Consensus       155 i~~~~~~~iGD~~nDi~~~~~aG~~~i~~~~~~-~-----~a~~v~~~~~el~~~l~  205 (207)
T 2go7_A          155 LNSDNTYYIGDRTLDVEFAQNSGIQSINFLEST-Y-----EGNHRIQALADISRIFE  205 (207)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEESSCCS-C-----TTEEECSSTTHHHHHTS
T ss_pred             CCcccEEEECCCHHHHHHHHHCCCeEEEEecCC-C-----CCCEEeCCHHHHHHHHh
Confidence            999999999999999999999999999999885 3     68899999999988764

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.85  E-value=6e-20  Score=132.03  Aligned_cols=134  Identities=21%  Similarity=0.227  Sum_probs=111.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++|++.++++.|++.|++++++|++........+ +.+|+..+|+.+++++   .....||++..+..++++++  +
T Consensus        87 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~k~~~~~~~~~~~~~~--~  160 (225)
T 3d6j_A           87 NTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFL-RNHMPDDWFDIIIGGE---DVTHHKPDPEGLLLAIDRLK--A  160 (225)
T ss_dssp             GCEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHH-HTSSCTTCCSEEECGG---GCSSCTTSTHHHHHHHHHTT--C
T ss_pred             cCccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHcCchhheeeeeehh---hcCCCCCChHHHHHHHHHhC--C
Confidence            4678999999999999999999999999877665555 4569999999999988   78889999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cc-cccchhhCChhhhhhhhcCCCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RT-EAADLVLNSLEEFKPELYGLPP  162 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~-~~~~~~~~~~~~l~~~l~~~~~  162 (166)
                      +++++++|||+.+|+.+|+.+|+.++++.++..... .. ..++++++++.++.+.|..+..
T Consensus       161 ~~~~~i~iGD~~nDi~~~~~aG~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el~~~l~~~~~  222 (225)
T 3d6j_A          161 CPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSG  222 (225)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEETTSSCCTTGGGGSCCSEEESSGGGGC--------
T ss_pred             ChHHeEEEcCCHHHHHHHHHCCCeEEEECCCCCChHHHhhcCCCEEECCHHHHHHhhhhhcC
Confidence            999999999999999999999999999999865443 22 3489999999999998876543

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.84  E-value=1.7e-20  Score=137.36  Aligned_cols=130  Identities=9%  Similarity=0.120  Sum_probs=112.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++. ++++++||+....+...+ +.+|+.  |+.+++++   .....||++..|+.+++++|  
T Consensus       113 ~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~~~--f~~~~~~~---~~~~~kp~~~~~~~~~~~lg--  183 (254)
T 3umg_A          113 HVLTPWPDSVPGLTAIKAE-YIIGPLSNGNTSLLLDMA-KNAGIP--WDVIIGSD---INRKYKPDPQAYLRTAQVLG--  183 (254)
T ss_dssp             GSCCBCTTHHHHHHHHHHH-SEEEECSSSCHHHHHHHH-HHHTCC--CSCCCCHH---HHTCCTTSHHHHHHHHHHTT--
T ss_pred             hhCcCCcCHHHHHHHHHhC-CeEEEEeCCCHHHHHHHH-HhCCCC--eeEEEEcC---cCCCCCCCHHHHHHHHHHcC--
Confidence            4578899999999999996 999999999977765554 446875  89999998   88999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEec----CCCCCcc-c--ccccchhhCChhhhhhhhcCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVP----DPTVPKH-R--TEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~----~~~~~~~-~--~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.    +|..... .  ...++++++++.++.++|...
T Consensus       184 i~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~~~el~~~l~~~  249 (254)
T 3umg_A          184 LHPGEVMLAAAHNGDLEAAHATGLATAFILRPVEHGPHQTDDLAPTGSWDISATDITDLAAQLRAG  249 (254)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTTTCTTCCSCSSCSSCCSEEESSHHHHHHHHHHC
T ss_pred             CChHHEEEEeCChHhHHHHHHCCCEEEEEecCCcCCCCccccccccCCCceEECCHHHHHHHhcCC
Confidence            999999999999999999999999999998    5543333 2  468899999999999988754

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=99.84  E-value=2.4e-20  Score=136.97  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=112.0

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++|++.++|+.|++. ++++++||+....+...+ +.+|+.  |+.+++++   .....||++.+|+.+++++|  
T Consensus       117 ~~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l-~~~g~~--f~~~~~~~---~~~~~kp~~~~~~~~~~~lg--  187 (254)
T 3umc_A          117 HRLRPWPDTLAGMHALKAD-YWLAALSNGNTALMLDVA-RHAGLP--WDMLLCAD---LFGHYKPDPQVYLGACRLLD--  187 (254)
T ss_dssp             GSCEECTTHHHHHHHHTTT-SEEEECCSSCHHHHHHHH-HHHTCC--CSEECCHH---HHTCCTTSHHHHHHHHHHHT--
T ss_pred             hcCCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHH-HHcCCC--cceEEeec---ccccCCCCHHHHHHHHHHcC--
Confidence            4567899999999999985 999999999877665554 446775  89999998   88999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEec----CCCCCcc-c--ccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVP----DPTVPKH-R--TEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~----~~~~~~~-~--~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++++|++|||+.+|+.+|+++|+.++++.    +|....+ .  ...++++++++.+|.++|..
T Consensus       188 i~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~g~~~~~~l~~~~~ad~v~~~l~el~~~l~~  252 (254)
T 3umc_A          188 LPPQEVMLCAAHNYDLKAARALGLKTAFIARPLEYGPGQSQDLAAEQDWDLIASDLLDLHRQLAA  252 (254)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTTTCTTCCSSSSCSSCCSEEESSHHHHHHHHHC
T ss_pred             CChHHEEEEcCchHhHHHHHHCCCeEEEEecCCccCCCCCcccccCCCCcEEECCHHHHHHHhcc
Confidence            999999999999999999999999999999    5543333 2  56889999999999998764

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.83  E-value=1.4e-19  Score=134.23  Aligned_cols=132  Identities=16%  Similarity=0.198  Sum_probs=112.9

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ....++||+.++|+.|++.|++++++|++....+...+ +.+|+..+| +.+++++   .....||++..+..+++++| 
T Consensus       100 ~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~~~~~~~~~~~~~~---~~~~~kp~~~~~~~~~~~lg-  174 (267)
T 1swv_A          100 RYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVA-KEAALQGYKPDFLVTPD---DVPAGRPYPWMCYKNAMELG-  174 (267)
T ss_dssp             GGCCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHH-HHHHHTTCCCSCCBCGG---GSSCCTTSSHHHHHHHHHHT-
T ss_pred             cccccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCcccChHheecCC---ccCCCCCCHHHHHHHHHHhC-
Confidence            34678999999999999999999999999877664444 445888886 8888888   78889999999999999999 


Q ss_pred             CCCC-CceEEEecCHhHHHHHHHcCCeEEEecCCCCC------------------------cc-cccccchhhCChhhhh
Q psy6288         101 KPQP-SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP------------------------KH-RTEAADLVLNSLEEFK  154 (166)
Q Consensus       101 ~~~~-~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~------------------------~~-~~~~~~~~~~~~~~l~  154 (166)
                       +++ ++|++|||+.+|+.+|+.+|+.+++|.++...                        .. ....++++++++.++.
T Consensus       175 -i~~~~~~i~iGD~~nDi~~a~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~~~~el~  253 (267)
T 1swv_A          175 -VYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFTIETMQELE  253 (267)
T ss_dssp             -CCSGGGEEEEESSHHHHHHHHHTTSEEEEECTTCTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTCSEEESSGGGHH
T ss_pred             -CCCCcCEEEEeCCHHHHHHHHHCCCEEEEEcCCCCccCccHHHHhhchhhhhhhhhhhHHHHHHhcCCceeccCHHHHH
Confidence             999 99999999999999999999999999998652                        11 2345899999999998


Q ss_pred             hhhcC
Q psy6288         155 PELYG  159 (166)
Q Consensus       155 ~~l~~  159 (166)
                      .+|..
T Consensus       254 ~~l~~  258 (267)
T 1swv_A          254 SVMEH  258 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.83  E-value=5e-20  Score=133.61  Aligned_cols=133  Identities=12%  Similarity=0.142  Sum_probs=110.4

Q ss_pred             CCccchhHHHHHHHHHHC-CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCcc-CCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVK-QGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~-~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++||+.++|+.|++. |++++|+||+....+...+ +.+|+..+|+.+++++   +.. ..||.+..++.+++++|.
T Consensus        91 ~~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~~k~~~~~~~~~~~~lg~  166 (234)
T 2hcf_A           91 DITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKL-KLPGIDHYFPFGAFAD---DALDRNELPHIALERARRMTGA  166 (234)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHH-HTTTCSTTCSCEECTT---TCSSGGGHHHHHHHHHHHHHCC
T ss_pred             CCCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHH-HHCCchhhcCcceecC---CCcCccchHHHHHHHHHHHhCC
Confidence            457899999999999999 9999999999977665555 5569999999877776   443 456889999999999982


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc--ccccchhhCChhhhhhhhcC
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR--TEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~  159 (166)
                      .+++++|++|||+.+|+.+|+++|+.+++|.++......  ...++++++++.++.++|..
T Consensus       167 ~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~~~~~~~~~~a~~v~~~~~el~~~l~~  227 (234)
T 2hcf_A          167 NYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLAS  227 (234)
T ss_dssp             CCCGGGEEEEESSHHHHHHHHTTTCEEEEECCSSSCHHHHHTTCCSEEESCSCCHHHHHHH
T ss_pred             CCCcccEEEECCCHHHHHHHHHCCCcEEEEcCCCCCHHHHHhCCCCEEeCCHHhHHHHHHH
Confidence            137999999999999999999999999999998654442  23488999999999887754

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.82  E-value=1.8e-20  Score=132.17  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCC---------------chhhHHHHHhhhcCcccccceEEec-----CCCCCcc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSS---------------AKESFELKTSRHKDTLKLFHHVVLG-----SADPEVK   82 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~---------------~~~~~~~~l~~~~gl~~~fd~v~~~-----~~~~~~~   82 (166)
                      ...++||+.++|+.|++.|++++|+||+               ....+... .+.+|+.  |+.++.+     +   +..
T Consensus        40 ~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gl~--fd~v~~s~~~~~~---~~~  113 (176)
T 2fpr_A           40 KLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQI-FTSQGVQ--FDEVLICPHLPAD---ECD  113 (176)
T ss_dssp             GCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHH-HHHTTCC--EEEEEEECCCGGG---CCS
T ss_pred             HCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHH-HHHcCCC--eeEEEEcCCCCcc---ccc
Confidence            4678999999999999999999999998               44445444 4556886  8888654     5   678


Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ..||+|.+|+.++++++  +++++|+||||+.+|+.+|+++|+.++++.++.
T Consensus       114 ~~KP~p~~~~~~~~~~g--i~~~~~l~VGD~~~Di~~A~~aG~~~i~v~~~~  163 (176)
T 2fpr_A          114 CRKPKVKLVERYLAEQA--MDRANSYVIGDRATDIQLAENMGINGLRYDRET  163 (176)
T ss_dssp             SSTTSCGGGGGGC------CCGGGCEEEESSHHHHHHHHHHTSEEEECBTTT
T ss_pred             ccCCCHHHHHHHHHHcC--CCHHHEEEEcCCHHHHHHHHHcCCeEEEEcCCc
Confidence            89999999999999999  999999999999999999999999999998874

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=99.82  E-value=1.8e-19  Score=134.05  Aligned_cols=121  Identities=13%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh----------cCcccccceEEecCCCCCccCCCCChHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH----------KDTLKLFHHVVLGSADPEVKQGKPAPDVFL   92 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~----------~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~   92 (166)
                      ...++||+.++|+.    |++++|+||++...+...+...          +++..+|+.++.+.    ....||+|+.|.
T Consensus       123 ~~~~~pgv~e~L~~----g~~l~i~Tn~~~~~~~~~l~~~~~g~~~~~~~l~l~~~~~~~f~~~----~~g~KP~p~~~~  194 (253)
T 2g80_A          123 KAPVYADAIDFIKR----KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDIN----TSGKKTETQSYA  194 (253)
T ss_dssp             CBCCCHHHHHHHHH----CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECHH----HHCCTTCHHHHH
T ss_pred             cCCCCCCHHHHHHc----CCEEEEEeCCCHHHHHHHHHhhcccccccccccchHhhcceEEeee----ccCCCCCHHHHH
Confidence            46789999999998    8999999999988765555432          25777788777554    212599999999


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhh
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEF  153 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l  153 (166)
                      .+++++|  ++|++|+||||+..|+.+|+++|+.++++.++.........++.++++|.+|
T Consensus       195 ~a~~~lg--~~p~~~l~vgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~i~~l~eL  253 (253)
T 2g80_A          195 NILRDIG--AKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNFETL  253 (253)
T ss_dssp             HHHHHHT--CCGGGEEEEESCHHHHHHHHTTTCEEEEECCTTSCCCCSSCCSCEESCSTTC
T ss_pred             HHHHHcC--CCcccEEEEcCCHHHHHHHHHcCCEEEEEcCCCCCCcccccCCCccCChhhC
Confidence            9999999  9999999999999999999999999999988533322112367888888764

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.82  E-value=2.9e-19  Score=128.42  Aligned_cols=119  Identities=24%  Similarity=0.374  Sum_probs=102.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++.|++++++|+.  ...... .+.+|+..+|+.+++++   .....||++..++.+++++|  ++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~-l~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~lg--i~  161 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFL-LERMNLTGYFDAIADPA---EVAASKPAPDIFIAAAHAVG--VA  161 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHH-HHHTTCGGGCSEECCTT---TSSSCTTSSHHHHHHHHHTT--CC
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHH-HHHcChHHHcceEeccc---cCCCCCCChHHHHHHHHHcC--CC
Confidence            568999999999999999999999998  334333 45579999999999998   88999999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhh
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFK  154 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~  154 (166)
                      +++|++|||+.+|+.+|+.+|+.++++...   .... .+++++.++.++.
T Consensus       162 ~~~~i~iGD~~nDi~~a~~aG~~~~~~~~~---~~~~-~a~~v~~~~~el~  208 (221)
T 2wf7_A          162 PSESIGLEDSQAGIQAIKDSGALPIGVGRP---EDLG-DDIVIVPDTSHYT  208 (221)
T ss_dssp             GGGEEEEESSHHHHHHHHHHTCEEEEESCH---HHHC-SSSEEESSGGGCC
T ss_pred             hhHeEEEeCCHHHHHHHHHCCCEEEEECCH---HHhc-cccchhcCHHhCC
Confidence            999999999999999999999999998432   2233 6888899988864

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.81  E-value=1.9e-19  Score=128.07  Aligned_cols=105  Identities=17%  Similarity=0.213  Sum_probs=96.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.| +++++||++...+...+ +.+|+..+|+.+++++   .....||++..++.++++++  +
T Consensus        84 ~~~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l-~~~~~~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--~  156 (200)
T 3cnh_A           84 QSQPRPEVLALARDLGQRY-RMYSLNNEGRDLNEYRI-RTFGLGEFLLAFFTSS---ALGVMKPNPAMYRLGLTLAQ--V  156 (200)
T ss_dssp             TCCBCHHHHHHHHHHTTTS-EEEEEECCCHHHHHHHH-HHHTGGGTCSCEEEHH---HHSCCTTCHHHHHHHHHHHT--C
T ss_pred             cCccCccHHHHHHHHHHcC-CEEEEeCCcHHHHHHHH-HhCCHHHhcceEEeec---ccCCCCCCHHHHHHHHHHcC--C
Confidence            4568999999999999999 99999999977765555 4469999999999998   88899999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ++++|++|||+.+|+.+|+++|+.++++.++.
T Consensus       157 ~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~~  188 (200)
T 3cnh_A          157 RPEEAVMVDDRLQNVQAARAVGMHAVQCVDAA  188 (200)
T ss_dssp             CGGGEEEEESCHHHHHHHHHTTCEEEECSCHH
T ss_pred             CHHHeEEeCCCHHHHHHHHHCCCEEEEECCch
Confidence            99999999999999999999999999998774

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.80  E-value=3.1e-19  Score=129.81  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=95.4

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH--h---hhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKT--S---RHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l--~---~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                      .++||+.++|+.|++. ++++|+||+........+  .   +.+|+..+|+.+++++   +....||+|.+|+.++++++
T Consensus       112 ~~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~---~~~~~KP~~~~~~~~~~~~g  187 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSY---EMKMAKPEPEIFKAVTEDAG  187 (229)
T ss_dssp             CCCHHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCSEEEEHH---HHTCCTTCHHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHhCCEEEeec---ccCCCCCCHHHHHHHHHHcC
Confidence            4679999999999998 999999999977664222  2   4469999999999999   89999999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK  137 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~  137 (166)
                        ++|++|++|||+.+|+.+|+++|+.++++.++....
T Consensus       188 --~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~~~~~k  223 (229)
T 4dcc_A          188 --IDPKETFFIDDSEINCKVAQELGISTYTPKAGEDWS  223 (229)
T ss_dssp             --CCGGGEEEECSCHHHHHHHHHTTCEEECCCTTCCGG
T ss_pred             --CCHHHeEEECCCHHHHHHHHHcCCEEEEECCHHHHH
Confidence              999999999999999999999999999998875443

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.80  E-value=5e-19  Score=130.29  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=105.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|+ .|++++++||+....+...+ +.+|+..+|+.++++.        ||++..+..++++++  
T Consensus       109 ~~~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~i~~~~--------kp~~~~~~~~~~~l~--  176 (251)
T 2pke_A          109 HPVEVIAGVREAVAAIA-ADYAVVLITKGDLFHQEQKI-EQSGLSDLFPRIEVVS--------EKDPQTYARVLSEFD--  176 (251)
T ss_dssp             CCCCBCTTHHHHHHHHH-TTSEEEEEEESCHHHHHHHH-HHHSGGGTCCCEEEES--------CCSHHHHHHHHHHHT--
T ss_pred             ccCCcCccHHHHHHHHH-CCCEEEEEeCCCHHHHHHHH-HHcCcHHhCceeeeeC--------CCCHHHHHHHHHHhC--
Confidence            35788999999999999 89999999999877665555 4469999999888754        899999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc----c--cccccch-hhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK----H--RTEAADL-VLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~----~--~~~~~~~-~~~~~~~l~~~l~~  159 (166)
                      +++++|++|||+. +|+.+|+++|+.++++.++....    +  ....+++ +++++.++.++|..
T Consensus       177 ~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~l~~  242 (251)
T 2pke_A          177 LPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAADEPRLREVPDPSGWPAAVRA  242 (251)
T ss_dssp             CCGGGEEEEESCCCCCCHHHHHTTCEEEECCCC-------------CCTTEEECSSGGGHHHHHHH
T ss_pred             cCchhEEEECCCchhhHHHHHHCCCEEEEECCCCccccccccccccCCCCeeeeCCHHHHHHHHHH
Confidence            9999999999999 99999999999999998875321    1  1346787 89999999887653

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=99.80  E-value=2.2e-19  Score=129.76  Aligned_cols=133  Identities=23%  Similarity=0.438  Sum_probs=112.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCC--CCChHHHHHHHHHcC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQG--KPAPDVFLVAAKRFD   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~--Kp~~~~~~~~~~~~~   99 (166)
                      ...++||+.++|+.|+.   +++++||+....+...+ +.+|+..+| +.+++++   .....  ||++..++.+++++|
T Consensus        85 ~~~~~~~~~~~l~~l~~---~~~i~s~~~~~~~~~~l-~~~~l~~~~~~~~~~~~---~~~~~~~kpk~~~~~~~~~~l~  157 (229)
T 2fdr_A           85 DVKIIDGVKFALSRLTT---PRCICSNSSSHRLDMML-TKVGLKPYFAPHIYSAK---DLGADRVKPKPDIFLHGAAQFG  157 (229)
T ss_dssp             HCCBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHH-HHTTCGGGTTTCEEEHH---HHCTTCCTTSSHHHHHHHHHHT
T ss_pred             CCccCcCHHHHHHHhCC---CEEEEECCChhHHHHHH-HhCChHHhccceEEecc---ccccCCCCcCHHHHHHHHHHcC
Confidence            46789999999998874   99999999877665555 446999999 9999998   77888  999999999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC-----ccccc-ccchhhCChhhhhhhhcCCCCCC
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP-----KHRTE-AADLVLNSLEEFKPELYGLPPFE  164 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~-----~~~~~-~~~~~~~~~~~l~~~l~~~~~~~  164 (166)
                        +++++|++|||+.+|+.+|+++|+.++++.++...     ..... .++++++++.++.+.|.+++.|.
T Consensus       158 --~~~~~~i~iGD~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el~~~l~~~~~~~  226 (229)
T 2fdr_A          158 --VSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAAMAEWE  226 (229)
T ss_dssp             --CCGGGEEEEESSHHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGHHHHHHHHTC--
T ss_pred             --CChhHeEEEcCCHHHHHHHHHCCCEEEEEecCCccchhhhHHHhhcCCceeecCHHHHHHHHHHhhhhh
Confidence              99999999999999999999999999999988643     11222 38999999999999888777664

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.80  E-value=2.1e-20  Score=135.43  Aligned_cols=122  Identities=17%  Similarity=0.191  Sum_probs=95.0

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|+++|++++|+||+... +... .+.+|+..+|+.+++++   +....||+|.+|+.++++++  ++
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~~-~~~~-l~~~gl~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--~~  166 (220)
T 2zg6_A           94 AFLYDDTLEFLEGLKSNGYKLALVSNASPR-VKTL-LEKFDLKKYFDALALSY---EIKAVKPNPKIFGFALAKVG--YP  166 (220)
T ss_dssp             EEECTTHHHHHHHHHTTTCEEEECCSCHHH-HHHH-HHHHTCGGGCSEEC--------------CCHHHHHHHHHC--SS
T ss_pred             ceECcCHHHHHHHHHHCCCEEEEEeCCcHH-HHHH-HHhcCcHhHeeEEEecc---ccCCCCCCHHHHHHHHHHcC--CC
Confidence            578999999999999999999999999764 5444 45579999999999999   88899999999999999999  77


Q ss_pred             CCceEEEecCHh-HHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288         104 PSKCLVFEDAPN-GVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       104 ~~~~i~IGD~~~-Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +   +||||+.. |+.+|+++|+.++++.++....+.    +.+++++.++.++|..
T Consensus       167 ~---~~vgD~~~~Di~~a~~aG~~~i~v~~~~~~~~~----~~~i~~l~el~~~l~~  216 (220)
T 2zg6_A          167 A---VHVGDIYELDYIGAKRSYVDPILLDRYDFYPDV----RDRVKNLREALQKIEE  216 (220)
T ss_dssp             E---EEEESSCCCCCCCSSSCSEEEEEBCTTSCCTTC----CSCBSSHHHHHHHHHH
T ss_pred             e---EEEcCCchHhHHHHHHCCCeEEEECCCCCCCCc----ceEECCHHHHHHHHHH
Confidence            7   99999997 999999999999999876322111    5789999999887754

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=9.2e-19  Score=131.02  Aligned_cols=128  Identities=26%  Similarity=0.326  Sum_probs=110.3

Q ss_pred             cCCccchhHHHHHHHHHHC-CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          22 LGYNLAIGALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ....++||+.++|+.|++. |++++++|++....+...+ +.+|+. +|+.+++++   +....||++..++.++++++ 
T Consensus       111 ~~~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l-~~~~l~-~f~~i~~~~---~~~~~kp~~~~~~~~~~~lg-  184 (275)
T 2qlt_A          111 EHSIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWF-DILKIK-RPEYFITAN---DVKQGKPHPEPYLKGRNGLG-  184 (275)
T ss_dssp             TTCEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHH-HHHTCC-CCSSEECGG---GCSSCTTSSHHHHHHHHHTT-
T ss_pred             cCCCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHH-HHcCCC-ccCEEEEcc---cCCCCCCChHHHHHHHHHcC-
Confidence            4567899999999999999 9999999999877775555 445776 488899988   78889999999999999999 


Q ss_pred             CC-------CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhh
Q psy6288         101 KP-------QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPE  156 (166)
Q Consensus       101 ~~-------~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~  156 (166)
                       +       ++++|++|||+.+|+.+|+++|+.+++|.++....+ ....++++++++.++...
T Consensus       185 -i~~~~~~~~~~~~i~~GDs~nDi~~a~~AG~~~i~v~~~~~~~~~~~~~ad~v~~~~~el~~~  247 (275)
T 2qlt_A          185 -FPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIRVG  247 (275)
T ss_dssp             -CCCCSSCGGGSCEEEEESSHHHHHHHHHTTCEEEEESSSSCHHHHTTSSCSEEESSGGGEEEC
T ss_pred             -CCccccCCCcceEEEEeCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHcChh
Confidence             8       999999999999999999999999999999865443 233689999999988653

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.79  E-value=4.3e-19  Score=127.14  Aligned_cols=104  Identities=16%  Similarity=0.274  Sum_probs=94.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh------cCcccccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH------KDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~------~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ..++||+.++|+.|++ |++++++||+....+.. +.+.      +|+..+|+.+++++   .....||++..|+.++++
T Consensus        88 ~~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~-~~~~l~~~~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~  162 (211)
T 2i6x_A           88 EEISAEKFDYIDSLRP-DYRLFLLSNTNPYVLDL-AMSPRFLPSGRTLDSFFDKVYASC---QMGKYKPNEDIFLEMIAD  162 (211)
T ss_dssp             EEECHHHHHHHHHHTT-TSEEEEEECCCHHHHHH-HTSTTSSTTCCCGGGGSSEEEEHH---HHTCCTTSHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHc-CCeEEEEeCCCHHHHHH-HHhhhccccccCHHHHcCeEEeec---ccCCCCCCHHHHHHHHHH
Confidence            4679999999999999 99999999998776644 4454      69999999999998   888999999999999999


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ++  +++++|++|||+.+|+.+|+++|+.++++.++.
T Consensus       163 ~~--~~~~~~~~igD~~~Di~~a~~aG~~~~~~~~~~  197 (211)
T 2i6x_A          163 SG--MKPEETLFIDDGPANVATAERLGFHTYCPDNGE  197 (211)
T ss_dssp             HC--CCGGGEEEECSCHHHHHHHHHTTCEEECCCTTC
T ss_pred             hC--CChHHeEEeCCCHHHHHHHHHcCCEEEEECCHH
Confidence            99  999999999999999999999999999998874

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.79  E-value=1e-19  Score=129.89  Aligned_cols=106  Identities=15%  Similarity=0.298  Sum_probs=94.6

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++.|++++++||++.......+...+|+..+|+.+++++   ..+..||++..+..++++++  ++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~--~~  164 (206)
T 2b0c_A           90 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQ---DLGMRKPEARIYQHVLQAEG--FS  164 (206)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHH---HHTCCTTCHHHHHHHHHHHT--CC
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChhhheeeEEEec---ccCCCCCCHHHHHHHHHHcC--CC
Confidence            57899999999999999999999999986655333333258889999999998   88899999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      +++|++|||+.+|+.+|+++|+.++++.++.
T Consensus       165 ~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~~  195 (206)
T 2b0c_A          165 PSDTVFFDDNADNIEGANQLGITSILVKDKT  195 (206)
T ss_dssp             GGGEEEEESCHHHHHHHHTTTCEEEECCSTT
T ss_pred             HHHeEEeCCCHHHHHHHHHcCCeEEEecCCc
Confidence            9999999999999999999999999998874

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.79  E-value=3.5e-19  Score=128.01  Aligned_cols=132  Identities=16%  Similarity=0.158  Sum_probs=104.2

Q ss_pred             hhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-------CCCccCCCCChHHH
Q psy6288          19 GLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-------DPEVKQGKPAPDVF   91 (166)
Q Consensus        19 ~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-------~~~~~~~Kp~~~~~   91 (166)
                      .......++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++.+.       ......+||++..|
T Consensus        69 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~~~~  147 (217)
T 3m1y_A           69 EVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYR-DLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEML  147 (217)
T ss_dssp             HHHTTCCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHH-HHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHHHHH
T ss_pred             HHHhcCcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHH-HHcCcchhccceeEEeCCEEEeeeccCCCCCCChHHHH
Confidence            34445789999999999999999999999999987775555 44699999998874430       00345689999999


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL  157 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l  157 (166)
                      +.++++++  +++++|++|||+.+|+.+|+++|+.+++  .  ........++++++  +|.++.+++
T Consensus       148 ~~~~~~~g--~~~~~~i~vGDs~~Di~~a~~aG~~~~~--~--~~~~l~~~ad~v~~~~dl~~~~~~~  209 (217)
T 3m1y_A          148 LVLQRLLN--ISKTNTLVVGDGANDLSMFKHAHIKIAF--N--AKEVLKQHATHCINEPDLALIKPLI  209 (217)
T ss_dssp             HHHHHHHT--CCSTTEEEEECSGGGHHHHTTCSEEEEE--S--CCHHHHTTCSEEECSSBGGGGTTC-
T ss_pred             HHHHHHcC--CCHhHEEEEeCCHHHHHHHHHCCCeEEE--C--ccHHHHHhcceeecccCHHHHHHHh
Confidence            99999999  9999999999999999999999998876  2  22334466777764  566666654

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.78  E-value=1.2e-18  Score=123.68  Aligned_cols=102  Identities=15%  Similarity=0.197  Sum_probs=89.9

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCc-hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSA-KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~-~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++||+.++|+.|++.|++++|+||++ ...+...+ +.+|+..+|+.++...        +|++..|+.++++++  +
T Consensus        67 ~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l-~~~gl~~~f~~~~~~~--------~~k~~~~~~~~~~~~--~  135 (187)
T 2wm8_A           67 VRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLL-ELFDLFRYFVHREIYP--------GSKITHFERLQQKTG--I  135 (187)
T ss_dssp             ECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHH-HHTTCTTTEEEEEESS--------SCHHHHHHHHHHHHC--C
T ss_pred             cCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHH-HHcCcHhhcceeEEEe--------CchHHHHHHHHHHcC--C
Confidence            5689999999999999999999999998 56665554 5579999998876544        467899999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                      ++++|+||||+.+|+.+|+++|+.++++.++...
T Consensus       136 ~~~~~~~igD~~~Di~~a~~aG~~~i~v~~g~~~  169 (187)
T 2wm8_A          136 PFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNL  169 (187)
T ss_dssp             CGGGEEEEESCHHHHHHHHTTTCEEEECSSSCCH
T ss_pred             ChHHEEEEeCCccChHHHHHcCCEEEEECCCCCh
Confidence            9999999999999999999999999999998643

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.77  E-value=1.9e-18  Score=138.68  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=93.1

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCC--chhhHHHHHhh-hcCcccccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSS--AKESFELKTSR-HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~--~~~~~~~~l~~-~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      .....++||+.++|+.|+++|++++|+||+  ........+.. ..|+..+||.+++++   +++..||+|++|+.++++
T Consensus        96 ~~~~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~~fd~i~~~~---~~~~~KP~p~~~~~~~~~  172 (555)
T 3i28_A           96 ISARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESC---QVGMVKPEPQIYKFLLDT  172 (555)
T ss_dssp             HHHCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHH---HHTCCTTCHHHHHHHHHH
T ss_pred             HhhcCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhhheeEEEecc---ccCCCCCCHHHHHHHHHH
Confidence            334789999999999999999999999998  11111122211 127889999999999   999999999999999999


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      +|  ++|++|+||||+.+|+.+|+++|+.++++.++.
T Consensus       173 lg--~~p~~~~~v~D~~~di~~a~~aG~~~~~~~~~~  207 (555)
T 3i28_A          173 LK--ASPSEVVFLDDIGANLKPARDLGMVTILVQDTD  207 (555)
T ss_dssp             HT--CCGGGEEEEESCHHHHHHHHHHTCEEEECSSHH
T ss_pred             cC--CChhHEEEECCcHHHHHHHHHcCCEEEEECCCc
Confidence            99  999999999999999999999999999998764

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.76  E-value=1.6e-19  Score=134.18  Aligned_cols=126  Identities=14%  Similarity=0.142  Sum_probs=103.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhh--HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES--FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++|++.++|+.|+ .|+++ |+||.....  ....+....++..+|+.+++++   ....+||+|.+|+.++++++ 
T Consensus       124 ~~~~~~~~~~~l~~l~-~g~~~-i~tn~~~~~~~~~~~~~~~~~l~~~f~~~~~~~---~~~~~KP~p~~~~~~~~~~~-  197 (264)
T 1yv9_A          124 TELSYEKVVLATLAIQ-KGALF-IGTNPDKNIPTERGLLPGAGSVVTFVETATQTK---PVYIGKPKAIIMERAIAHLG-  197 (264)
T ss_dssp             TTCCHHHHHHHHHHHH-TTCEE-EESCCCSEEEETTEEEECHHHHHHHHHHHHTCC---CEECSTTSHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHh-CCCEE-EEECCCCcccCCCCcccCCcHHHHHHHHHhCCC---ccccCCCCHHHHHHHHHHcC-
Confidence            4568999999999997 78987 889987532  1111223335778899998888   78889999999999999999 


Q ss_pred             CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-cc---cccchhhCChhhhhh
Q psy6288         101 KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-RT---EAADLVLNSLEEFKP  155 (166)
Q Consensus       101 ~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~~---~~~~~~~~~~~~l~~  155 (166)
                       +++++|+||||++ +|+.+|+++|+.+++|.+|....+ ..   ..|+++++++.++..
T Consensus       198 -~~~~~~~~vGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~l~~~~~~~d~v~~~l~el~~  256 (264)
T 1yv9_A          198 -VEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWTF  256 (264)
T ss_dssp             -SCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCSSSTTTCSSCCSEEESSGGGCCT
T ss_pred             -CCHHHEEEECCCcHHHHHHHHHcCCcEEEECCCCCCHHHHHhcCCCCCEEEecHHHHhh
Confidence             9999999999995 999999999999999999875543 22   268999999998865

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.76  E-value=1.5e-17  Score=117.03  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=91.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++|++.++|+.|++.|++++++||... .+... .+.+|+..+|+.+++++   +....||++..++.++++++  +
T Consensus        80 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~-~~~~~-l~~~~~~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--~  152 (190)
T 2fi1_A           80 HPILFEGVSDLLEDISNQGGRHFLVSHRND-QVLEI-LEKTSIAAYFTEVVTSS---SGFKRKPNPESMLYLREKYQ--I  152 (190)
T ss_dssp             SCCBCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHH-HHHTTCGGGEEEEECGG---GCCCCTTSCHHHHHHHHHTT--C
T ss_pred             cCccCcCHHHHHHHHHHCCCcEEEEECCcH-HHHHH-HHHcCCHhheeeeeecc---ccCCCCCCHHHHHHHHHHcC--C
Confidence            345899999999999999999999999874 34444 45579999999999998   88899999999999999999  7


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      +  +|++|||+.+|+.+|+++|+.++++.++.
T Consensus       153 ~--~~~~iGD~~~Di~~a~~aG~~~~~~~~~~  182 (190)
T 2fi1_A          153 S--SGLVIGDRPIDIEAGQAAGLDTHLFTSIV  182 (190)
T ss_dssp             S--SEEEEESSHHHHHHHHHTTCEEEECSCHH
T ss_pred             C--eEEEEcCCHHHHHHHHHcCCeEEEECCCC
Confidence            7  99999999999999999999999998763

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.76  E-value=1.1e-18  Score=126.56  Aligned_cols=126  Identities=13%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc--cccceEE--------ecCCCCCcc----CCCCCh
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHHVV--------LGSADPEVK----QGKPAP   88 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~--~~fd~v~--------~~~~~~~~~----~~Kp~~   88 (166)
                      ..+++||+.++|+.|+++|++++|+||+....+...+ +.+|+.  .+|+.++        .+.   +..    ..+|+|
T Consensus        84 ~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~Kp  159 (225)
T 1nnl_A           84 PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVA-SKLNIPATNVFANRLKFYFNGEYAGF---DETQPTAESGGKG  159 (225)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCCGGGEEEECEEECTTSCEEEE---CTTSGGGSTTHHH
T ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-HHcCCCcccEEeeeEEEcCCCcEecC---CCCCcccCCCchH
Confidence            3679999999999999999999999999987775554 557887  4787664        333   221    146778


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288          89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      ..++.++++++  +  ++|+||||+.+|+.+|+++|+ ++++..+.........++++++++.++.++|
T Consensus       160 ~~~~~~~~~~~--~--~~~~~vGDs~~Di~~a~~ag~-~i~~~~~~~~~~~~~~~~~~~~~~~el~~~l  223 (225)
T 1nnl_A          160 KVIKLLKEKFH--F--KKIIMIGDGATDMEACPPADA-FIGFGGNVIRQQVKDNAKWYITDFVELLGEL  223 (225)
T ss_dssp             HHHHHHHHHHC--C--SCEEEEESSHHHHTTTTTSSE-EEEECSSCCCHHHHHHCSEEESCGGGGCC--
T ss_pred             HHHHHHHHHcC--C--CcEEEEeCcHHhHHHHHhCCe-EEEecCccccHHHHhcCCeeecCHHHHHHHH
Confidence            99999999999  6  799999999999999999999 8887554322233457899999999998765

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.76  E-value=1.6e-19  Score=135.68  Aligned_cols=120  Identities=16%  Similarity=0.198  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHHCCCCEEEEeCCchhhH--HH-HHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc----CC
Q psy6288          28 IGALRLINHLHKHNIPFAIATSSAKESF--EL-KTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF----DE  100 (166)
Q Consensus        28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~--~~-~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~----~~  100 (166)
                      +...++++.|++.|++ +|+||.+....  .. .+....++..+|+.+++++   .....||+|.+|+.+++++    + 
T Consensus       148 ~~~~~l~~~L~~~g~~-~i~tn~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~---~~~~~KP~p~~~~~a~~~l~~~~~-  222 (284)
T 2hx1_A          148 HDLNKTVNLLRKRTIP-AIVANTDNTYPLTKTDVAIAIGGVATMIESILGRR---FIRFGKPDSQMFMFAYDMLRQKME-  222 (284)
T ss_dssp             HHHHHHHHHHHHCCCC-EEEECCCSEEECSSSCEEECHHHHHHHHHHHHCSC---EEEESTTSSHHHHHHHHHHHTTSC-
T ss_pred             ccHHHHHHHHhcCCCe-EEEECCCccccCcCCCccccCChHHHHHHHHhCCc---eeEecCCCHHHHHHHHHHHhhccC-
Confidence            3666677789999999 99999976543  21 2224457889999999988   8889999999999999999    9 


Q ss_pred             CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-cc-------cccchhhCChhhh
Q psy6288         101 KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-RT-------EAADLVLNSLEEF  153 (166)
Q Consensus       101 ~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~~-------~~~~~~~~~~~~l  153 (166)
                       ++|++|+||||++ +|+.+|+++|+.+++|.+|..... ..       ..|+++++++.++
T Consensus       223 -~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~~~~~~l~~~~~~~~~~pd~~~~~l~el  283 (284)
T 2hx1_A          223 -ISKREILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICESAVIE  283 (284)
T ss_dssp             -CCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSSSCGGGHHHHHHHHTCCCSEEESCSCCC
T ss_pred             -CCcceEEEECCCcHHHHHHHHHcCCeEEEECCCCCCHHHHHhhhhccCCCCCEEccchhhh
Confidence             9999999999996 999999999999999999875543 22       4689999998876

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.75  E-value=4.1e-19  Score=132.30  Aligned_cols=127  Identities=17%  Similarity=0.063  Sum_probs=103.9

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhH--HHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF--ELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~--~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ..++|++.++++.|+ .|+++ ++||.+....  ...+....++..+|+.+++++   ....+||+|.+|+.++++    
T Consensus       129 ~~~~~~~~~~l~~L~-~g~~~-i~tn~~~~~~~~~~~l~~~~~l~~~~~~~~~~~---~~~~~KP~~~~~~~~~~~----  199 (263)
T 1zjj_A          129 DLTYEKLKYATLAIR-NGATF-IGTNPDATLPGEEGIYPGAGSIIAALKVATNVE---PIIIGKPNEPMYEVVREM----  199 (263)
T ss_dssp             TCBHHHHHHHHHHHH-TTCEE-EESCCCSEEEETTEEEECHHHHHHHHHHHHCCC---CEECSTTSHHHHHHHHHH----
T ss_pred             CCCHHHHHHHHHHHH-CCCEE-EEECCCccccCCCCCcCCcHHHHHHHHHHhCCC---ccEecCCCHHHHHHHHHh----
Confidence            567999999999999 79998 9999876432  111222146778899999888   788999999999999999    


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-cc---cccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-RT---EAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~~---~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++++|+||||++ +|+.+|+++|+.+++|.+|..... ..   ..++++++++.++.++|.+
T Consensus       200 ~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~p~~~~~~l~el~~~l~~  262 (263)
T 1zjj_A          200 FPGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYLKT  262 (263)
T ss_dssp             STTCEEEEEESCTTTHHHHHHHTTCEEEEESSSSCCHHHHTTCSSCCSEEESSGGGGGGGGC-
T ss_pred             CCcccEEEECCChHHHHHHHHHcCCeEEEECCCCCChHHHHhcCCCCCEEECCHHHHHHHHhh
Confidence            3699999999997 999999999999999999865543 21   2689999999999988754

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.75  E-value=3.6e-19  Score=135.33  Aligned_cols=131  Identities=15%  Similarity=0.131  Sum_probs=107.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhH-HH-HHhhhcC-cccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF-EL-KTSRHKD-TLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~-~~-~l~~~~g-l~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ..++|++.++++.|++.|+ ++++||...... .. .+....| +..+|+.+++++   ....+||++.+|+.++++++ 
T Consensus       155 ~~~~~~~~~~l~~l~~~g~-~~i~tn~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~---~~~~~KP~~~~~~~~~~~lg-  229 (306)
T 2oyc_A          155 HFSFAKLREACAHLRDPEC-LLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQ---ALVVGKPSPYMFECITENFS-  229 (306)
T ss_dssp             TCCHHHHHHHHHHHTSTTS-EEEESCCCCEEECTTSCEEECHHHHHHHHHHHHTCC---CEECSTTSTHHHHHHHHHSC-
T ss_pred             CCCHHHHHHHHHHHHcCCC-EEEEEcCCccccCCCCCcCCCCcHHHHHHHHHhCCC---ceeeCCCCHHHHHHHHHHcC-
Confidence            4578999999999999899 999999975533 11 2223345 778888888888   78899999999999999999 


Q ss_pred             CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-c---------ccccchhhCChhhhhhhhcCC
Q psy6288         101 KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-R---------TEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       101 ~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~---------~~~~~~~~~~~~~l~~~l~~~  160 (166)
                       +++++|+||||++ +|+.+|+++|+.+++|.+|..... .         ...|+++++++.++..++.+-
T Consensus       230 -i~~~e~l~vGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~pd~vi~~l~el~~~l~~~  299 (306)
T 2oyc_A          230 -IDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIADLTEGLEDE  299 (306)
T ss_dssp             -CCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSSCCHHHHHHHHHTTCGGGSCSEEESSGGGGGGGC---
T ss_pred             -CChHHEEEECCCchHHHHHHHHCCCeEEEECCCCCCHHHHHhhhcccccCCCCCEEECCHHHHHHHHHhh
Confidence             9999999999997 999999999999999999876543 1         247899999999999887653

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.75  E-value=5.3e-19  Score=130.49  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=105.4

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc---eEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH---HVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd---~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      .++|++.++++.|+ .|+++ ++||.........+ ...|+..+|+   .+++++   ....+||+|.+|+.+++++|  
T Consensus       122 ~~~~~~~~~l~~l~-~~~~~-i~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~Kp~~~~~~~~~~~lg--  193 (259)
T 2ho4_A          122 FHYQLLNQAFRLLL-DGAPL-IAIHKARYYKRKDG-LALGPGPFVTALEYATDTK---AMVVGKPEKTFFLEALRDAD--  193 (259)
T ss_dssp             CBHHHHHHHHHHHH-TTCCE-EESCCCSEEEETTE-EEECSHHHHHHHHHHHTCC---CEECSTTSHHHHHHHGGGGT--
T ss_pred             CCHHHHHHHHHHHH-CCCEE-EEECCCCcCcccCC-cccCCcHHHHHHHHHhCCC---ceEecCCCHHHHHHHHHHcC--
Confidence            37899999999999 89999 99998755443333 4468888887   566667   78889999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCC-ccc---ccccchhhCChhhhhhhhc
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVP-KHR---TEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~-~~~---~~~~~~~~~~~~~l~~~l~  158 (166)
                      +++++|++|||+. +|+.+|+++|+.+++|.+|... .+.   ...++++++++.++.+++.
T Consensus       194 i~~~~~~~iGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~l~  255 (259)
T 2ho4_A          194 CAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTGKYKAADEEKINPPPYLTCESFPHAVDHIL  255 (259)
T ss_dssp             CCGGGEEEEESCTTTTHHHHHHTTCEEEEESSTTCCTTGGGGSSSCCSEEESCHHHHHHHHH
T ss_pred             CChHHEEEECCCcHHHHHHHHHCCCcEEEECCCCCCcccccccCCCCCEEECCHHHHHHHHH
Confidence            9999999999999 9999999999999999998432 221   3578999999999988775

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.74  E-value=4.6e-18  Score=130.21  Aligned_cols=133  Identities=11%  Similarity=0.031  Sum_probs=103.7

Q ss_pred             hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-------CCCccCCCCChHHHH
Q psy6288          20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-------DPEVKQGKPAPDVFL   92 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-------~~~~~~~Kp~~~~~~   92 (166)
                      +.....++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.++..+.       ......+||++..+.
T Consensus       174 ~~~~~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l-~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~  252 (317)
T 4eze_A          174 VCDRMTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLK-ARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKKQTLV  252 (317)
T ss_dssp             HHHTCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHH
T ss_pred             HHhCCEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHH-HHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCHHHHH
Confidence            3446789999999999999999999999999987775555 55799999988765330       002445699999999


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccc--cccchhhCChhhhhhhhcC
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRT--EAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~  159 (166)
                      .++++++  +++++|+||||+.+|+.+|+++|+.+++ . +  .....  .......+++.++..+|..
T Consensus       253 ~~~~~lg--v~~~~~i~VGDs~~Di~aa~~AG~~va~-~-~--~~~~~~~a~~~i~~~~L~~ll~~L~~  315 (317)
T 4eze_A          253 DLAARLN--IATENIIACGDGANDLPMLEHAGTGIAW-K-A--KPVVREKIHHQINYHGFELLLFLIED  315 (317)
T ss_dssp             HHHHHHT--CCGGGEEEEECSGGGHHHHHHSSEEEEE-S-C--CHHHHHHCCEEESSSCGGGGGGGTCS
T ss_pred             HHHHHcC--CCcceEEEEeCCHHHHHHHHHCCCeEEe-C-C--CHHHHHhcCeeeCCCCHHHHHHHHHh
Confidence            9999999  9999999999999999999999987666 2 2  22222  2333456788888887653

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.74  E-value=2.9e-18  Score=125.11  Aligned_cols=124  Identities=14%  Similarity=0.059  Sum_probs=99.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++| +++|+||++...+...+ +.+|+..+|+.++...      ..|  +..+..+++  +  +
T Consensus        94 ~~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~~~~~l-~~~gl~~~f~~~~~~~------~~K--~~~~~~~~~--~--~  159 (231)
T 2p11_A           94 ASRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKI-ARSGLWDEVEGRVLIY------IHK--ELMLDQVME--C--Y  159 (231)
T ss_dssp             GGGBCTTHHHHHHHHHTTS-CEEEEEECCSSHHHHHH-HHTTHHHHTTTCEEEE------SSG--GGCHHHHHH--H--S
T ss_pred             hCCcCccHHHHHHHHHhCC-CEEEEeCCCHHHHHHHH-HHcCcHHhcCeeEEec------CCh--HHHHHHHHh--c--C
Confidence            4678999999999999999 99999999987776555 4469999998765432      233  567777666  7  8


Q ss_pred             CCCceEEEecCHh---HHHHHHHcCCeEEEecCCCC--Ccc-c-cc-ccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAPN---GVLGAKAAGMSCVMVPDPTV--PKH-R-TE-AADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~~---Di~~a~~~G~~~i~v~~~~~--~~~-~-~~-~~~~~~~~~~~l~~~l~~~  160 (166)
                      +|++|+||||+.+   |+.+|+++|+.++++.++..  ..+ . .. .++++++++.++.++|...
T Consensus       160 ~~~~~~~vgDs~~d~~di~~A~~aG~~~i~v~~g~~~~~~~~l~~~~~~~~~i~~~~el~~~l~~~  225 (231)
T 2p11_A          160 PARHYVMVDDKLRILAAMKKAWGARLTTVFPRQGHYAFDPKEISSHPPADVTVERIGDLVEMDAEW  225 (231)
T ss_dssp             CCSEEEEECSCHHHHHHHHHHHGGGEEEEEECCSSSSSCHHHHHHSCCCSEEESSGGGGGGCGGGG
T ss_pred             CCceEEEEcCccchhhhhHHHHHcCCeEEEeCCCCCCCcchhccccCCCceeecCHHHHHHHHHHH
Confidence            8999999999998   99999999999999999843  222 2 22 3899999999998877643

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.72  E-value=1.6e-18  Score=126.96  Aligned_cols=125  Identities=10%  Similarity=0.110  Sum_probs=100.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccC--------CCCChHH-HH-
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ--------GKPAPDV-FL-   92 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~--------~Kp~~~~-~~-   92 (166)
                      ...++||+.++|+.|+++|++++|+||+....+...+ +  |+..+ +.+++++   ....        .||+|.. +. 
T Consensus        75 ~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l-~--~l~~~-~~v~~~~---~~~~~~~~~~~~~kp~p~~~~~~  147 (236)
T 2fea_A           75 DAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLL-E--GIVEK-DRIYCNH---ASFDNDYIHIDWPHSCKGTCSNQ  147 (236)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHH-T--TTSCG-GGEEEEE---EECSSSBCEEECTTCCCTTCCSC
T ss_pred             CCCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-h--cCCCC-CeEEeee---eEEcCCceEEecCCCCccccccc
Confidence            4789999999999999999999999999977664444 4  77665 8888887   4443        7898884 54 


Q ss_pred             ------HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc-cc-ccchhhCChhhhhhhhcC
Q psy6288          93 ------VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR-TE-AADLVLNSLEEFKPELYG  159 (166)
Q Consensus        93 ------~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~-~~~~~~~~~~~l~~~l~~  159 (166)
                            .++++++  +++++|+||||+.+|+.+|+++|+.++.  ++. .... .. .++++++++.++.++|..
T Consensus       148 ~~~~K~~~~~~~~--~~~~~~~~vGDs~~Di~~a~~aG~~~~~--~~~-~~~~~~~~~~~~~~~~~~el~~~l~~  217 (236)
T 2fea_A          148 CGCCKPSVIHELS--EPNQYIIMIGDSVTDVEAAKLSDLCFAR--DYL-LNECREQNLNHLPYQDFYEIRKEIEN  217 (236)
T ss_dssp             CSSCHHHHHHHHC--CTTCEEEEEECCGGGHHHHHTCSEEEEC--HHH-HHHHHHTTCCEECCSSHHHHHHHHHT
T ss_pred             cCCcHHHHHHHHh--ccCCeEEEEeCChHHHHHHHhCCeeeec--hHH-HHHHHHCCCCeeecCCHHHHHHHHHH
Confidence                  8999999  9999999999999999999999998863  221 1111 22 278999999999888765

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.70  E-value=7.7e-17  Score=115.22  Aligned_cols=130  Identities=14%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc--ccccceEEecCCCCC----ccCCCCChHHHHHHH-H
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT--LKLFHHVVLGSADPE----VKQGKPAPDVFLVAA-K   96 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl--~~~fd~v~~~~~~~~----~~~~Kp~~~~~~~~~-~   96 (166)
                      ..++||+.++|+.|++.|++++|+||+....+...+ +.+|+  ..+|...+....+ .    ....||.+..+...+ +
T Consensus        81 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  158 (219)
T 3kd3_A           81 NLLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFA-DYLNIPRENIFAVETIWNSD-GSFKELDNSNGACDSKLSAFDK  158 (219)
T ss_dssp             TTBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHTCCGGGEEEEEEEECTT-SBEEEEECTTSTTTCHHHHHHH
T ss_pred             ccCChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHcCCCcccEEEeeeeecCC-CceeccCCCCCCcccHHHHHHH
Confidence            568999999999999999999999999877775554 44688  4456532222101 2    245777776555555 5


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~  158 (166)
                      .++  +++++|++|||+.+|+.++ ++|+.++++..+.....  ....++++++++.++.++|+
T Consensus       159 ~~~--~~~~~~~~vGD~~~Di~~~-~~G~~~~~v~~~~~~~~~~~~~~ad~v~~~~~el~~~l~  219 (219)
T 3kd3_A          159 AKG--LIDGEVIAIGDGYTDYQLY-EKGYATKFIAYMEHIEREKVINLSKYVARNVAELASLIM  219 (219)
T ss_dssp             HGG--GCCSEEEEEESSHHHHHHH-HHTSCSEEEEECSSCCCHHHHHHCSEEESSHHHHHHHHC
T ss_pred             HhC--CCCCCEEEEECCHhHHHHH-hCCCCcEEEeccCccccHHHHhhcceeeCCHHHHHHhhC
Confidence            569  9999999999999999998 68999888877643322  45678999999999998764

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.70  E-value=4.2e-18  Score=126.80  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=103.1

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHH--HHhhhcCcccccceEEecCCCCC-ccCCCCChHHHHHHHHHcCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFEL--KTSRHKDTLKLFHHVVLGSADPE-VKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~--~l~~~~gl~~~fd~v~~~~~~~~-~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ..+++++.++++.| +.|+++ ++||........  .+.+..++..+|+.+++.+   . ...+||++.+|+.+++++| 
T Consensus       136 ~~~~~~~~~~l~~l-~~~~~~-i~tn~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~kpk~~~~~~~~~~lg-  209 (271)
T 1vjr_A          136 TLTYERLKKACILL-RKGKFY-IATHPDINCPSKEGPVPDAGSIMAAIEASTGRK---PDLIAGKPNPLVVDVISEKFG-  209 (271)
T ss_dssp             TCCHHHHHHHHHHH-TTTCEE-EESCCCSEECCTTSCEECHHHHHHHHHHHHSCC---CSEECSTTSTHHHHHHHHHHT-
T ss_pred             CcCHHHHHHHHHHH-HCCCeE-EEECCCccccCCCCccccccHHHHHHHHHhCCC---CcccCCCCCHHHHHHHHHHhC-
Confidence            45789999999999 778998 889886442211  1223335677888877777   7 8889999999999999999 


Q ss_pred             CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-cc---cccchhhCChhhhhhhh
Q psy6288         101 KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-RT---EAADLVLNSLEEFKPEL  157 (166)
Q Consensus       101 ~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~~---~~~~~~~~~~~~l~~~l  157 (166)
                       +++++|++|||++ +|+.+|+.+|+.+++|.+|....+ ..   ..++++++++.++.++|
T Consensus       210 -i~~~e~i~iGD~~~nDi~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~i~~l~el~~~l  270 (271)
T 1vjr_A          210 -VPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKAV  270 (271)
T ss_dssp             -CCGGGEEEEESCHHHHHHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHHHHHH
T ss_pred             -CCCceEEEECCCcHHHHHHHHHcCCeEEEECCCCCCHHHHhhcCCCCCEEECCHHHHHHHh
Confidence             9999999999995 999999999999999999875543 21   37899999999998765

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.70  E-value=3e-17  Score=117.34  Aligned_cols=127  Identities=14%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCcc--C-CCCChHHHHHHHH
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVK--Q-GKPAPDVFLVAAK   96 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~--~-~Kp~~~~~~~~~~   96 (166)
                      .....++||+.++|+.|++. ++++|+||+....+...+ +.+|+..+| +.++.++   +..  . .+|+|..+..+++
T Consensus        65 ~~~~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l-~~~gl~~~f~~~~~~~~---~~~~~~~~~p~p~~~~~~l~  139 (206)
T 1rku_A           65 IATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDD---SDRVVGYQLRQKDPKRQSVI  139 (206)
T ss_dssp             HTTCCCCTTHHHHHHHHHTT-SEEEEEEEEEHHHHHHHH-HHTTCCCEEEEEEEECT---TSCEEEEECCSSSHHHHHHH
T ss_pred             HHhcCCCccHHHHHHHHHhc-CcEEEEECChHHHHHHHH-HHcCCcceecceeEEcC---CceEEeeecCCCchHHHHHH
Confidence            34678899999999999999 999999999877665444 557999999 5666655   332  1 2488899999999


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchh-hCChhhhhhhhc
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLV-LNSLEEFKPELY  158 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~-~~~~~~l~~~l~  158 (166)
                      +++  ..+++|+||||+.+|+.+|+++|+.++. .   .... ....++++ ++++.++.+.|.
T Consensus       140 ~l~--~~~~~~~~iGD~~~Di~~a~~aG~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~l~  197 (206)
T 1rku_A          140 AFK--SLYYRVIAAGDSYNDTTMLSEAHAGILF-H---APENVIREFPQFPAVHTYEDLKREFL  197 (206)
T ss_dssp             HHH--HTTCEEEEEECSSTTHHHHHHSSEEEEE-S---CCHHHHHHCTTSCEECSHHHHHHHHH
T ss_pred             HHH--hcCCEEEEEeCChhhHHHHHhcCccEEE-C---CcHHHHHHHhhhccccchHHHHHHHH
Confidence            999  8899999999999999999999998663 2   1222 22345665 899999987765

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.69  E-value=4.5e-18  Score=123.98  Aligned_cols=126  Identities=16%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEE---------------------------------EEeCCchhhHHHHHhhhcC-cccc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFA---------------------------------IATSSAKESFELKTSRHKD-TLKL   68 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~---------------------------------ivS~~~~~~~~~~l~~~~g-l~~~   68 (166)
                      ...+++|+.++++.|++.|++++                                 ++|+.. .... .+.+.+| +..+
T Consensus        85 ~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~-~~~~-~~~~~~~~~~~~  162 (250)
T 2c4n_A           85 KKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPD-THGR-GFYPACGALCAG  162 (250)
T ss_dssp             CEEEEECCTHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHHTTCEEEESCCC-SBSS-TTCBCHHHHHHH
T ss_pred             CEEEEEcCHHHHHHHHHcCCcccCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCCC-CeeecchHHHHH
Confidence            45678999999999999999998                                 888876 3332 2223345 6667


Q ss_pred             cceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecC-HhHHHHHHHcCCeEEEecCCCCCcc-cc---ccc
Q psy6288          69 FHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDA-PNGVLGAKAAGMSCVMVPDPTVPKH-RT---EAA  143 (166)
Q Consensus        69 fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~-~~Di~~a~~~G~~~i~v~~~~~~~~-~~---~~~  143 (166)
                      |+.+.+.+   ....+||++.+++.+++++|  +++++|++|||+ .+|+.+|+.+|+.+++|.+|....+ ..   ..+
T Consensus       163 ~~~~~~~~---~~~~~kpk~~~~~~~~~~lg--i~~~~~i~iGD~~~nDi~~~~~aG~~~~~v~~g~~~~~~~~~~~~~~  237 (250)
T 2c4n_A          163 IEKISGRK---PFYVGKPSPWIIRAALNKMQ--AHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRP  237 (250)
T ss_dssp             HHHHHCCC---CEECSTTSTHHHHHHHHHHT--CCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSSCCGGGGSSCSSCC
T ss_pred             HHHHhCCC---ceEeCCCCHHHHHHHHHHcC--CCcceEEEECCCchhHHHHHHHcCCeEEEECCCCCChhhhhhcCCCC
Confidence            77777777   77889999999999999999  999999999999 6999999999999999999876543 22   578


Q ss_pred             chhhCChhhhhh
Q psy6288         144 DLVLNSLEEFKP  155 (166)
Q Consensus       144 ~~~~~~~~~l~~  155 (166)
                      +++++++.++.+
T Consensus       238 ~~v~~~~~el~~  249 (250)
T 2c4n_A          238 SWIYPSVAEIDV  249 (250)
T ss_dssp             SEEESSGGGCCC
T ss_pred             CEEECCHHHhhc
Confidence            999999998754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.69  E-value=1.3e-16  Score=120.95  Aligned_cols=101  Identities=9%  Similarity=-0.050  Sum_probs=84.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhh--------cCcccccceEEecCCCCCccCCCCChHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRH--------KDTLKLFHHVVLGSADPEVKQGKPAPDVFL   92 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~--------~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~   92 (166)
                      ..++||+.++|+.|+++|++++|+||.+...   ....+ +.        +|+  +|+.+++++   +. ..||+|..+.
T Consensus       187 ~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l-~~~~~~~~~~~~~--~~~~~~~~~---~~-~~kp~p~~~~  259 (301)
T 1ltq_A          187 DVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYY-RMTRKWVEDIAGV--PLVMQCQRE---QG-DTRKDDVVKE  259 (301)
T ss_dssp             CCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHH-HHHHHHHHHTTCC--CCSEEEECC---TT-CCSCHHHHHH
T ss_pred             cCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHH-HhcccccccccCC--Cchheeecc---CC-CCcHHHHHHH
Confidence            4579999999999999999999999997542   22233 33        588  589988877   44 4699999999


Q ss_pred             HHHHHcCCCCCCCc-eEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          93 VAAKRFDEKPQPSK-CLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        93 ~~~~~~~~~~~~~~-~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      .++++++  .++.+ |+||||+..|+.+|+++|+.+++|.||
T Consensus       260 ~~~~~~~--~~~~~~~~~vgD~~~di~~a~~aG~~~~~v~~G  299 (301)
T 1ltq_A          260 EIFWKHI--APHFDVKLAIDDRTQVVEMWRRIGVECWQVASG  299 (301)
T ss_dssp             HHHHHHT--TTTCEEEEEEECCHHHHHHHHHTTCCEEECSCC
T ss_pred             HHHHHHh--ccccceEEEeCCcHHHHHHHHHcCCeEEEecCC
Confidence            9999998  66644 799999999999999999999999998

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.67  E-value=3.7e-17  Score=118.42  Aligned_cols=103  Identities=13%  Similarity=0.073  Sum_probs=82.4

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      .++|++.++|+.|+++|++++|+||+........+ +.  +.++|+.++.+.........||+|..|..++++++  +  
T Consensus        88 ~~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l-~~--l~~~f~~i~~~~~~~~~~~~KP~p~~~~~~~~~~g--~--  160 (211)
T 2b82_A           88 IPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVS-KT--LADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKN--I--  160 (211)
T ss_dssp             EECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHH-HH--HHHHTTCCTTTBCCCEECCCCTTCCCSHHHHHHTT--E--
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HH--HHHhcCccccccchhhhcCCCCCHHHHHHHHHHCC--C--
Confidence            46789999999999999999999999866443333 32  56778776432200024558999999999999999  7  


Q ss_pred             CceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288         105 SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus       105 ~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                        |+||||+.+|+.+|+++|+.++++.++...
T Consensus       161 --~l~VGDs~~Di~aA~~aG~~~i~v~~g~~~  190 (211)
T 2b82_A          161 --RIFYGDSDNDITAARDVGARGIRILRASNS  190 (211)
T ss_dssp             --EEEEESSHHHHHHHHHTTCEEEECCCCTTC
T ss_pred             --EEEEECCHHHHHHHHHCCCeEEEEecCCCC
Confidence              999999999999999999999999998643

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=99.65  E-value=2.7e-16  Score=120.93  Aligned_cols=132  Identities=15%  Similarity=0.097  Sum_probs=98.5

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC-------CCCCccCCCCChHHHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS-------ADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~-------~~~~~~~~Kp~~~~~~~~   94 (166)
                      ...+++||+.++|+.|++.|++++++||+....+... .+.+|+..+|+..+...       .......+||++..++.+
T Consensus       175 ~~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~-~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~  253 (335)
T 3n28_A          175 ETLPLMPELPELVATLHAFGWKVAIASGGFTYFSDYL-KEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTL  253 (335)
T ss_dssp             TTCCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHH-HHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHH
T ss_pred             HhCCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHH-HHHcCCCeEEeeeeEeeCCeeeeeecccccChhhhHHHHHHH
Confidence            3568999999999999999999999999987766444 45579988887653221       000355679999999999


Q ss_pred             HHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288          95 AKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +++++  +++++|++|||+.+|+.+|+.+|+..++  .+..............+++.++...|.
T Consensus       254 ~~~lg--i~~~~~v~vGDs~nDi~~a~~aG~~va~--~~~~~~~~~a~~v~~~~~l~~v~~~L~  313 (335)
T 3n28_A          254 AQQYD--VEIHNTVAVGDGANDLVMMAAAGLGVAY--HAKPKVEAKAQTAVRFAGLGGVVCILS  313 (335)
T ss_dssp             HHHHT--CCGGGEEEEECSGGGHHHHHHSSEEEEE--SCCHHHHTTSSEEESSSCTHHHHHHHH
T ss_pred             HHHcC--CChhhEEEEeCCHHHHHHHHHCCCeEEe--CCCHHHHhhCCEEEecCCHHHHHHHHH
Confidence            99999  9999999999999999999999998776  221111122222335667777766653

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.65  E-value=4.2e-16  Score=107.82  Aligned_cols=124  Identities=11%  Similarity=0.138  Sum_probs=94.1

Q ss_pred             HHHHhhhhhhhcCC------------ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC
Q psy6288          11 THVIFDMDGLLLGY------------NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD   78 (166)
Q Consensus        11 ~~~~~~~~~~~~~~------------~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~   78 (166)
                      +.++.|+++.+...            .+.|+..++|+.|++.|++++|+||++...+...+ +.+|+..+|+.       
T Consensus        10 k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~~~~-------   81 (162)
T 2p9j_A           10 KLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRL-KELGVEEIYTG-------   81 (162)
T ss_dssp             CEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHH-HHTTCCEEEEC-------
T ss_pred             eEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCHhhccC-------
Confidence            33555666655531            23567889999999999999999999987775555 55688776631       


Q ss_pred             CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          79 PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        79 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                           .||++..++.++++++  +++++|+||||+.+|+.+|+++|+.++.. ++  .......++++++++.+
T Consensus        82 -----~kp~~~~~~~~~~~~~--~~~~~~~~vGD~~~Di~~a~~ag~~~~~~-~~--~~~~~~~a~~v~~~~~~  145 (162)
T 2p9j_A           82 -----SYKKLEIYEKIKEKYS--LKDEEIGFIGDDVVDIEVMKKVGFPVAVR-NA--VEEVRKVAVYITQRNGG  145 (162)
T ss_dssp             -----C--CHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHHSSEEEECT-TS--CHHHHHHCSEECSSCSS
T ss_pred             -----CCCCHHHHHHHHHHcC--CCHHHEEEECCCHHHHHHHHHCCCeEEec-Cc--cHHHHhhCCEEecCCCC
Confidence                 5899999999999999  99999999999999999999999986643 33  22334467888888654

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.64  E-value=2.1e-16  Score=124.88  Aligned_cols=129  Identities=14%  Similarity=0.069  Sum_probs=98.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEE-------ecCCCCCccCCCCChHHHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVV-------LGSADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~-------~~~~~~~~~~~Kp~~~~~~~~   94 (166)
                      ....++||+.++|+.|++.|++++|+||+....+... .+.+|+..+|+..+       ++...+....+||++..|+.+
T Consensus       253 ~~~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~-~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~  331 (415)
T 3p96_A          253 GQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPL-AEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREF  331 (415)
T ss_dssp             HHCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHH-HHHTTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHH
T ss_pred             HhCccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHH-HHHcCccceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHH
Confidence            3568999999999999999999999999997777544 45579988876543       221111344579999999999


Q ss_pred             HHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchh--hCChhhhhhhh
Q psy6288          95 AKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV--LNSLEEFKPEL  157 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~--~~~~~~l~~~l  157 (166)
                      +++++  +++++|+||||+.+|+.+|+++|+.+++  .+  .......++++  ..++.++..++
T Consensus       332 ~~~~g--i~~~~~i~vGD~~~Di~~a~~aG~~va~--~~--~~~~~~~ad~~i~~~~l~~ll~~l  390 (415)
T 3p96_A          332 AQRAG--VPMAQTVAVGDGANDIDMLAAAGLGIAF--NA--KPALREVADASLSHPYLDTVLFLL  390 (415)
T ss_dssp             HHHHT--CCGGGEEEEECSGGGHHHHHHSSEEEEE--SC--CHHHHHHCSEEECSSCTTHHHHHT
T ss_pred             HHHcC--cChhhEEEEECCHHHHHHHHHCCCeEEE--CC--CHHHHHhCCEEEccCCHHHHHHHh
Confidence            99999  9999999999999999999999998776  22  22233445554  44666666544

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.64  E-value=1.1e-15  Score=108.81  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC-------CCccCCCCChHHHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD-------PEVKQGKPAPDVFLVA   94 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~-------~~~~~~Kp~~~~~~~~   94 (166)
                      ....+.|++.++|+.|+++|++++++|++....+... .+.+|+..+|+.++.....       .+....++++..+..+
T Consensus        73 ~~~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~  151 (211)
T 1l7m_A           73 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKI-KEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI  151 (211)
T ss_dssp             HTCCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHH-HHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHH
T ss_pred             HhCCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHH-HHHcCCCeEEEeeeEEECCEEcCCcccCccCCccHHHHHHHH
Confidence            3567889999999999999999999999886665444 4446887777654432200       0012245678999999


Q ss_pred             HHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC--hhhhhhhh
Q psy6288          95 AKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS--LEEFKPEL  157 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~--~~~l~~~l  157 (166)
                      +++++  +++++|++|||+.+|+.+|+.+|+.. ++. +  .......+++++.+  +.++.+++
T Consensus       152 ~~~lg--i~~~~~~~iGD~~~Di~~~~~ag~~~-~~~-~--~~~~~~~a~~v~~~~~~~~l~~~l  210 (211)
T 1l7m_A          152 AKIEG--INLEDTVAVGDGANDISMFKKAGLKI-AFC-A--KPILKEKADICIEKRDLREILKYI  210 (211)
T ss_dssp             HHHHT--CCGGGEEEEECSGGGHHHHHHCSEEE-EES-C--CHHHHTTCSEEECSSCGGGGGGGC
T ss_pred             HHHcC--CCHHHEEEEecChhHHHHHHHCCCEE-EEC-C--CHHHHhhcceeecchhHHHHHHhh
Confidence            99999  99999999999999999999999974 343 1  22334568888888  88887654

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.64  E-value=5.9e-17  Score=115.57  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=98.6

Q ss_pred             HHHHhhhhhhhcCCcc-----chhHHHH-------HHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC
Q psy6288          11 THVIFDMDGLLLGYNL-----AIGALRL-------INHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD   78 (166)
Q Consensus        11 ~~~~~~~~~~~~~~~~-----~~g~~~~-------l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~   78 (166)
                      +.++.|+++.+.....     .+.+.++       |+.|++.|++++|+||++...+...+ +.+|+..+|+.       
T Consensus        20 k~vifD~DGtL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l-~~lgl~~~~~~-------   91 (191)
T 3n1u_A           20 KCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRM-EQLGITHYYKG-------   91 (191)
T ss_dssp             SEEEECSTTTTBCSCCEECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHH-HHHTCCEEECS-------
T ss_pred             CEEEEeCCCCCCCCceeecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHH-HHcCCccceeC-------
Confidence            3355566766554211     1445566       99999999999999999988776655 44688776632       


Q ss_pred             CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhh
Q psy6288          79 PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEE  152 (166)
Q Consensus        79 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~  152 (166)
                           .||++..++.++++++  +++++|+||||+.+|+.+++.+|+.++ +..+  .......+++++.+      +.+
T Consensus        92 -----~kpk~~~~~~~~~~~~--~~~~~~~~vGD~~~Di~~~~~ag~~~~-~~~~--~~~~~~~ad~v~~~~~~~g~~~~  161 (191)
T 3n1u_A           92 -----QVDKRSAYQHLKKTLG--LNDDEFAYIGDDLPDLPLIQQVGLGVA-VSNA--VPQVLEFADWRTERTGGRGAVRE  161 (191)
T ss_dssp             -----CSSCHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHSSEEEE-CTTC--CHHHHHHSSEECSSCTTTTHHHH
T ss_pred             -----CCChHHHHHHHHHHhC--CCHHHEEEECCCHHHHHHHHHCCCEEE-eCCc--cHHHHHhCCEEecCCCCCcHHHH
Confidence                 2899999999999999  999999999999999999999999863 3322  23345567788777      667


Q ss_pred             hhhhhcC
Q psy6288         153 FKPELYG  159 (166)
Q Consensus       153 l~~~l~~  159 (166)
                      +.++++.
T Consensus       162 l~~~ll~  168 (191)
T 3n1u_A          162 LCDLILN  168 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777653

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.63  E-value=2.4e-15  Score=111.74  Aligned_cols=76  Identities=25%  Similarity=0.295  Sum_probs=67.2

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccccc--------ccchhhCChh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTE--------AADLVLNSLE  151 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~--------~~~~~~~~~~  151 (166)
                      ...+||++.+++.++++++  ++++++++|||++ +|+.+|+++|+.+++|.+|....+...        .|+++++++.
T Consensus       183 ~~~~kp~~~~~~~~~~~~~--~~~~~~~~vGD~~~~Di~~~~~~g~~~~~v~~g~~~~~~~~~~~~~~~~~~d~v~~~~~  260 (268)
T 3qgm_A          183 VVVGKPSEVIMREALDILG--LDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNSLK  260 (268)
T ss_dssp             EECSTTSHHHHHHHHHHHT--CCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSSCCTTTHHHHHHHHTCCCSEEESSHH
T ss_pred             eecCCCCHHHHHHHHHHhC--CCchhEEEECCCchHHHHHHHHCCCcEEEECCCCCCHHHHHhhccccCCCCCEEECCHH
Confidence            5568999999999999999  9999999999995 999999999999999999976654322        7899999999


Q ss_pred             hhhhhhc
Q psy6288         152 EFKPELY  158 (166)
Q Consensus       152 ~l~~~l~  158 (166)
                      ++.++|.
T Consensus       261 el~~~l~  267 (268)
T 3qgm_A          261 DMVEALE  267 (268)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHHh
Confidence            9998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.62  E-value=2e-15  Score=119.48  Aligned_cols=100  Identities=14%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCch------------hhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAK------------ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~------------~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~   93 (166)
                      ++||+.++|+.|+++|++++|+||++.            ..+ ..+++.+|+  +|+.+++++   ++...||+|.+|..
T Consensus        88 ~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~-~~~l~~lgl--~fd~i~~~~---~~~~~KP~p~~~~~  161 (416)
T 3zvl_A           88 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKV-EAVLEKLGV--PFQVLVATH---AGLNRKPVSGMWDH  161 (416)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHH-HHHHHHHTS--CCEEEEECS---SSTTSTTSSHHHHH
T ss_pred             hcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHH-HHHHHHcCC--CEEEEEECC---CCCCCCCCHHHHHH
Confidence            799999999999999999999999761            113 233445677  389999999   89999999999999


Q ss_pred             HHHHcCC--CCCCCceEEEecCH-----------------hHHHHHHHcCCeEEEec
Q psy6288          94 AAKRFDE--KPQPSKCLVFEDAP-----------------NGVLGAKAAGMSCVMVP  131 (166)
Q Consensus        94 ~~~~~~~--~~~~~~~i~IGD~~-----------------~Di~~a~~~G~~~i~v~  131 (166)
                      ++++++.  .+++++|+||||+.                 .|+.+|+++|+..+...
T Consensus       162 a~~~l~~~~~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi~f~~pe  218 (416)
T 3zvl_A          162 LQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPE  218 (416)
T ss_dssp             HHHHSSTTCCCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTCCEECHH
T ss_pred             HHHHhCCCCCCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCCcccCcH
Confidence            9999951  17899999999997                 89999999999987543

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=99.61  E-value=8.3e-16  Score=108.65  Aligned_cols=129  Identities=16%  Similarity=0.107  Sum_probs=99.3

Q ss_pred             hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ........++||+.++|+.|++.|++++++||+....+. .+ +.+|+..+++.+...+.  .....+|.+.....++++
T Consensus        72 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~-~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~l~~  147 (201)
T 4ap9_A           72 LRTREKVNVSPEARELVETLREKGFKVVLISGSFEEVLE-PF-KELGDEFMANRAIFEDG--KFQGIRLRFRDKGEFLKR  147 (201)
T ss_dssp             HHGGGGCCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSG-GG-TTTSSEEEEEEEEEETT--EEEEEECCSSCHHHHHGG
T ss_pred             HHHHHhCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHH-HH-HHcCchhheeeEEeeCC--ceECCcCCccCHHHHHHh
Confidence            334455789999999999999999999999999876664 44 66788888666655541  122245555556667777


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCC
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLP  161 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  161 (166)
                      +    ++++|++|||+.+|+.+|+.+|+. +++..+..      .++++++++.++.++|..+.
T Consensus       148 l----~~~~~i~iGD~~~Di~~~~~ag~~-v~~~~~~~------~ad~v~~~~~el~~~l~~l~  200 (201)
T 4ap9_A          148 F----RDGFILAMGDGYADAKMFERADMG-IAVGREIP------GADLLVKDLKELVDFIKNLK  200 (201)
T ss_dssp             G----TTSCEEEEECTTCCHHHHHHCSEE-EEESSCCT------TCSEEESSHHHHHHHHHTCC
T ss_pred             c----CcCcEEEEeCCHHHHHHHHhCCce-EEECCCCc------cccEEEccHHHHHHHHHHhh
Confidence            6    499999999999999999999997 56655532      78999999999999887653

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.61  E-value=1.1e-15  Score=105.85  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=88.4

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      +|+.|++.|++++++||+....+...+ +.+|+..+|+.            .||++..++.++++++  +++++|+||||
T Consensus        39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~-~~~gl~~~~~~------------~kpk~~~~~~~~~~~~--~~~~~~~~vGD  103 (164)
T 3e8m_A           39 GIFWAHNKGIPVGILTGEKTEIVRRRA-EKLKVDYLFQG------------VVDKLSAAEELCNELG--INLEQVAYIGD  103 (164)
T ss_dssp             HHHHHHHTTCCEEEECSSCCHHHHHHH-HHTTCSEEECS------------CSCHHHHHHHHHHHHT--CCGGGEEEECC
T ss_pred             HHHHHHHCCCEEEEEeCCChHHHHHHH-HHcCCCEeecc------------cCChHHHHHHHHHHcC--CCHHHEEEECC
Confidence            599999999999999999988775555 55788777632            3999999999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhhhhhhhc
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEEFKPELY  158 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~l~~~l~  158 (166)
                      +.+|+.+|+++|+.++...   ........+++++.+      +.++.+.++
T Consensus       104 ~~~Di~~~~~ag~~~~~~~---~~~~~~~~ad~v~~~~~~~g~~~e~~~~ll  152 (164)
T 3e8m_A          104 DLNDAKLLKRVGIAGVPAS---APFYIRRLSTIFLEKRGGEGVFREFVEKVL  152 (164)
T ss_dssp             SGGGHHHHTTSSEEECCTT---SCHHHHTTCSSCCCCCTTTTHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCeEEcCC---hHHHHHHhCcEEeccCCCCcHHHHHHHHHH
Confidence            9999999999999766432   223345567888877      778887776

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.60  E-value=6.6e-15  Score=109.44  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             CccCCCCChHHHHHHHHHcCCCCCCCceEEEecC-HhHHHHHHHcCCeEEEecCCCCCccccc----ccchhhCChhhhh
Q psy6288          80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDA-PNGVLGAKAAGMSCVMVPDPTVPKHRTE----AADLVLNSLEEFK  154 (166)
Q Consensus        80 ~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~-~~Di~~a~~~G~~~i~v~~~~~~~~~~~----~~~~~~~~~~~l~  154 (166)
                      ....+||++.+++.++++++  ++++++++|||+ .+|+.+|+++|+.+++|.+|....+...    .|+++++++.+|.
T Consensus       177 ~~~~~Kp~~~~~~~~~~~~~--~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~g~~~~~~~~~~~~~pd~~~~~l~~l~  254 (264)
T 3epr_A          177 PVFIGKPNAIIMNKALEILN--IPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWT  254 (264)
T ss_dssp             CEECSTTSHHHHHHHHHHHT--SCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCGGGGGGCSSCCSEEESCGGGCC
T ss_pred             cccCCCCCHHHHHHHHHHhC--cCcccEEEECCCcHHHHHHHHHCCCeEEEECCCCCChHHHHhcCCCCCEEECCHHHHh
Confidence            34568999999999999999  999999999999 5999999999999999999976655222    7899999999876


Q ss_pred             h
Q psy6288         155 P  155 (166)
Q Consensus       155 ~  155 (166)
                      +
T Consensus       255 ~  255 (264)
T 3epr_A          255 F  255 (264)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.58  E-value=1.3e-15  Score=112.51  Aligned_cols=127  Identities=17%  Similarity=0.117  Sum_probs=94.3

Q ss_pred             cchhHHHHHHHHHHC-CCCEEEEeCCchhhHHHHHhhhcCcccccc---eEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          26 LAIGALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFH---HVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd---~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      .++++.+.++.|++. |+++ ++|+......... ....++..+|+   ...+.+   ....+||++.+|+.+++++|  
T Consensus       132 ~~~~~~~~l~~l~~~~~~~~-i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~kpk~~~~~~~~~~lg--  204 (271)
T 2x4d_A          132 SYQNMNNAFQVLMELEKPVL-ISLGKGRYYAATS-GLMLDVGPYMKALEYACGIK---AEVVGKPSPEFFKSALQAIG--  204 (271)
T ss_dssp             CHHHHHHHHHHHHHCSSCCE-EEECCCSEEEETT-EEEECHHHHHHHHHHHHTCC---CEEESTTCHHHHHHHHHHHT--
T ss_pred             CHHHHHHHHHHHHhcCCCeE-EEEcCCcccccCC-CcccChhHHHHHHHHHhCCc---eeeccCCCHHHHHHHHHHhC--
Confidence            366788888888887 8887 6666543322111 12234444443   233344   56778999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCC-cc-c--ccccchhhCChhhhhhhhcC
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVP-KH-R--TEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~-~~-~--~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +++++|++|||+. +|+.+|+.+|+.+++|.++... .. .  ...++++++++.++.++|.+
T Consensus       205 i~~~~~i~iGD~~~nDi~~a~~aG~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~el~~~l~~  267 (271)
T 2x4d_A          205 VEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHHPEVKADGYVDNLAEAVDLLLQ  267 (271)
T ss_dssp             CCGGGEEEEESCTTTTHHHHHHTTCEEEEESSTTCCGGGGGCSSCCCSEEESSHHHHHHHHHH
T ss_pred             CCcceEEEECCCcHHHHHHHHHCCCcEEEEcCCCCCchhhcccCCCCCEEeCCHHHHHHHHHh
Confidence            9999999999999 9999999999999999998433 22 2  24589999999999887754

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=99.56  E-value=1.1e-14  Score=109.66  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=92.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.++.          +    ....++++++  .
T Consensus       161 ~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~i~~----------~----~K~~~~~~l~--~  223 (287)
T 3a1c_A          161 SDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-RELNLDLVIAEVLP----------H----QKSEEVKKLQ--A  223 (287)
T ss_dssp             ECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCSEEECSCCT----------T----CHHHHHHHHT--T
T ss_pred             ccccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhCCceeeeecCh----------H----HHHHHHHHHh--c
Confidence            4579999999999999999999999999988775555 45699888865531          1    1277889999  7


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~  160 (166)
                      . ++|+||||+.+|+.+|+++|+. +.+..+  .......+++++  +++.++..+|..-
T Consensus       224 ~-~~~~~vGDs~~Di~~a~~ag~~-v~~~~~--~~~~~~~ad~v~~~~~~~~l~~~l~~~  279 (287)
T 3a1c_A          224 K-EVVAFVGDGINDAPALAQADLG-IAVGSG--SDVAVESGDIVLIRDDLRDVVAAIQLS  279 (287)
T ss_dssp             T-CCEEEEECTTTCHHHHHHSSEE-EEECCC--SCCSSCCSSEEESSSCTHHHHHHHHTT
T ss_pred             C-CeEEEEECCHHHHHHHHHCCee-EEeCCC--CHHHHhhCCEEEeCCCHHHHHHHHHHH
Confidence            7 9999999999999999999997 444432  223345788999  9999998877643

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.55  E-value=8.6e-16  Score=109.95  Aligned_cols=131  Identities=12%  Similarity=0.106  Sum_probs=95.8

Q ss_pred             HHHHhhhhhhhcCCc-----cchhHHHH-------HHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC
Q psy6288          11 THVIFDMDGLLLGYN-----LAIGALRL-------INHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD   78 (166)
Q Consensus        11 ~~~~~~~~~~~~~~~-----~~~g~~~~-------l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~   78 (166)
                      +.++.|+++.+....     ..+.+.++       |+.|++.|++++|+||+....+...+ +.+|+..+|+.       
T Consensus        26 k~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l-~~lgi~~~~~~-------   97 (195)
T 3n07_A           26 KLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRM-KALGISLIYQG-------   97 (195)
T ss_dssp             CEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HHTTCCEEECS-------
T ss_pred             CEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHH-HHcCCcEEeeC-------
Confidence            345566676554311     12344455       99999999999999999988775555 55788776621       


Q ss_pred             CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhh
Q psy6288          79 PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEE  152 (166)
Q Consensus        79 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~  152 (166)
                           .||++..++.++++++  +++++|++|||+.+|+.+++++|+..+. ..  ........+++++.+      +.+
T Consensus        98 -----~k~k~~~~~~~~~~~~--~~~~~~~~vGD~~nDi~~~~~ag~~va~-~n--a~~~~~~~ad~v~~~~~~~G~~~~  167 (195)
T 3n07_A           98 -----QDDKVQAYYDICQKLA--IAPEQTGYIGDDLIDWPVMEKVALRVCV-AD--GHPLLAQRANYVTHIKGGHGAVRE  167 (195)
T ss_dssp             -----CSSHHHHHHHHHHHHC--CCGGGEEEEESSGGGHHHHTTSSEEEEC-TT--SCHHHHHHCSEECSSCTTTTHHHH
T ss_pred             -----CCCcHHHHHHHHHHhC--CCHHHEEEEcCCHHHHHHHHHCCCEEEE-CC--hHHHHHHhCCEEEcCCCCCCHHHH
Confidence                 2899999999999999  9999999999999999999999987543 22  223344566777665      456


Q ss_pred             hhhhhcC
Q psy6288         153 FKPELYG  159 (166)
Q Consensus       153 l~~~l~~  159 (166)
                      +.++++.
T Consensus       168 ~~~~il~  174 (195)
T 3n07_A          168 VCDLILQ  174 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666653

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=99.32  E-value=3.4e-16  Score=116.82  Aligned_cols=116  Identities=12%  Similarity=0.164  Sum_probs=92.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.++              |..+..++++++  .
T Consensus       134 ~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~gl~~~f~~~~--------------p~~k~~~~~~l~--~  196 (263)
T 2yj3_A          134 SDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS-KELNIQEYYSNLS--------------PEDKVRIIEKLK--Q  196 (263)
Confidence            3578999999999999999999999999877775444 5579988886664              233577889999  8


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l~  158 (166)
                      ++++|+||||+.+|+.+++++|+.   +.++.........+++++  +++.++...+.
T Consensus       197 ~~~~~~~VGD~~~D~~aa~~Agv~---va~g~~~~~~~~~ad~v~~~~~l~~l~~~l~  251 (263)
T 2yj3_A          197 NGNKVLMIGDGVNDAAALALADVS---VAMGNGVDISKNVADIILVSNDIGTLLGLIK  251 (263)
Confidence            899999999999999999999964   445533333456788988  99999877653

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.54  E-value=2.2e-14  Score=101.04  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=86.0

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS  105 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  105 (166)
                      +.+...++|+.|+++|++++++||.+...+...+ +.+|+..+|+            ..||++..++.++++++  ++++
T Consensus        36 ~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~-~~lgl~~~~~------------~~k~k~~~~~~~~~~~~--~~~~  100 (180)
T 1k1e_A           36 FHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRI-ADLGIKLFFL------------GKLEKETACFDLMKQAG--VTAE  100 (180)
T ss_dssp             EEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHH-HHHTCCEEEE------------SCSCHHHHHHHHHHHHT--CCGG
T ss_pred             eccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHH-HHcCCceeec------------CCCCcHHHHHHHHHHcC--CCHH
Confidence            4567889999999999999999999987775555 4468877662            14889999999999999  9999


Q ss_pred             ceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh
Q psy6288         106 KCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL  150 (166)
Q Consensus       106 ~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~  150 (166)
                      +|+||||+.+|+.+++++|+.++.. .+  .......+++++.+.
T Consensus       101 ~~~~vGD~~~Di~~~~~ag~~~~~~-~~--~~~~~~~ad~v~~~~  142 (180)
T 1k1e_A          101 QTAYIGDDSVDLPAFAACGTSFAVA-DA--PIYVKNAVDHVLSTH  142 (180)
T ss_dssp             GEEEEECSGGGHHHHHHSSEEEECT-TS--CHHHHTTSSEECSSC
T ss_pred             HEEEECCCHHHHHHHHHcCCeEEeC-Cc--cHHHHhhCCEEecCC
Confidence            9999999999999999999987643 22  223345677777764

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.54  E-value=5.1e-14  Score=98.98  Aligned_cols=108  Identities=14%  Similarity=0.124  Sum_probs=86.9

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      +|+.|++.|++++|+|++....+...+ +.+|+. +|    .+        .||++..++.++++++  +++++|+||||
T Consensus        47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~lgi~-~~----~~--------~~~k~~~l~~~~~~~~--~~~~~~~~vGD  110 (176)
T 3mmz_A           47 GIAALRKSGLTMLILSTEQNPVVAARA-RKLKIP-VL----HG--------IDRKDLALKQWCEEQG--IAPERVLYVGN  110 (176)
T ss_dssp             HHHHHHHTTCEEEEEESSCCHHHHHHH-HHHTCC-EE----ES--------CSCHHHHHHHHHHHHT--CCGGGEEEEEC
T ss_pred             HHHHHHHCCCeEEEEECcChHHHHHHH-HHcCCe-eE----eC--------CCChHHHHHHHHHHcC--CCHHHEEEEcC
Confidence            699999999999999999988775444 556886 33    22        2899999999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhhhhhhhcC
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEEFKPELYG  159 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~  159 (166)
                      +.+|+.+++.+|+..+. ..  ........+++++.+      +.++.++|+.
T Consensus       111 ~~nD~~~~~~ag~~v~~-~~--~~~~~~~~ad~v~~~~~~~g~~~~l~~~l~~  160 (176)
T 3mmz_A          111 DVNDLPCFALVGWPVAV-AS--AHDVVRGAARAVTTVPGGDGAIREIASWILG  160 (176)
T ss_dssp             SGGGHHHHHHSSEEEEC-TT--CCHHHHHHSSEECSSCTTTTHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCeEEC-CC--hhHHHHHhCCEEecCCCCCcHHHHHHHHHHH
Confidence            99999999999976443 22  233345677888888      8899888874

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.54  E-value=2.6e-14  Score=101.46  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=85.7

Q ss_pred             HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEe
Q psy6288          32 RLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFE  111 (166)
Q Consensus        32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IG  111 (166)
                      .+|+.|++.|++++|+||++...+...+ +.+|+..+|+            ..||++..++.++++++  +++++|+|||
T Consensus        60 ~~l~~L~~~g~~v~ivT~~~~~~~~~~l-~~lgl~~~~~------------~~kpk~~~~~~~~~~~g--~~~~~~~~iG  124 (188)
T 2r8e_A           60 YGIRCALTSDIEVAIITGRKAKLVEDRC-ATLGITHLYQ------------GQSNKLIAFSDLLEKLA--IAPENVAYVG  124 (188)
T ss_dssp             HHHHHHHTTTCEEEEECSSCCHHHHHHH-HHHTCCEEEC------------SCSCSHHHHHHHHHHHT--CCGGGEEEEE
T ss_pred             HHHHHHHHCCCeEEEEeCCChHHHHHHH-HHcCCceeec------------CCCCCHHHHHHHHHHcC--CCHHHEEEEC
Confidence            3799999999999999999987775555 4468876652            24899999999999999  9999999999


Q ss_pred             cCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh------hhhhhhhc
Q psy6288         112 DAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL------EEFKPELY  158 (166)
Q Consensus       112 D~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~------~~l~~~l~  158 (166)
                      |+.+|+.+|+++|+.++.. .+  .......+++++.+.      .++.+.++
T Consensus       125 D~~~Di~~a~~ag~~~~~~-~~--~~~~~~~ad~v~~~~~~~g~~~~~l~~ll  174 (188)
T 2r8e_A          125 DDLIDWPVMEKVGLSVAVA-DA--HPLLIPRADYVTRIAGGRGAVREVCDLLL  174 (188)
T ss_dssp             SSGGGHHHHTTSSEEEECT-TS--CTTTGGGSSEECSSCTTTTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCEEEec-Cc--CHHHHhcCCEEEeCCCCCcHHHHHHHHHH
Confidence            9999999999999987543 22  222334578888886      35555554

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.54  E-value=2.8e-14  Score=101.40  Aligned_cols=108  Identities=14%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      +|+.|++.|++++|+||+....+...+ +.+|+..+|+.+            ++++..++.++++++  +++++|+||||
T Consensus        54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~lgl~~~f~~~------------~~K~~~~~~~~~~~g--~~~~~~~~vGD  118 (189)
T 3mn1_A           54 GIKMLIASGVTTAIISGRKTAIVERRA-KSLGIEHLFQGR------------EDKLVVLDKLLAELQ--LGYEQVAYLGD  118 (189)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHH-HHHTCSEEECSC------------SCHHHHHHHHHHHHT--CCGGGEEEEEC
T ss_pred             HHHHHHHCCCEEEEEECcChHHHHHHH-HHcCCHHHhcCc------------CChHHHHHHHHHHcC--CChhHEEEECC
Confidence            899999999999999999988775554 557998887432            556799999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhhhhhhhc
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEEFKPELY  158 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~l~~~l~  158 (166)
                      +.+|+.+++++|+..+ +..  ........+++++.+      +.++.++++
T Consensus       119 ~~nDi~~~~~ag~~~~-~~~--~~~~~~~~ad~v~~~~~~~G~~~~l~~~l~  167 (189)
T 3mn1_A          119 DLPDLPVIRRVGLGMA-VAN--AASFVREHAHGITRAQGGEGAAREFCELIL  167 (189)
T ss_dssp             SGGGHHHHHHSSEEEE-CTT--SCHHHHHTSSEECSSCTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCeEE-eCC--ccHHHHHhCCEEecCCCCCcHHHHHHHHHH
Confidence            9999999999998754 322  223344567787777      677777665

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.51  E-value=2.9e-14  Score=103.16  Aligned_cols=108  Identities=16%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      +|+.|++.|++++|+|++....+...+ +.+|+..+|+.+            ||++..++.++++++  +++++|+||||
T Consensus        84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l-~~lgi~~~f~~~------------k~K~~~l~~~~~~lg--~~~~~~~~vGD  148 (211)
T 3ij5_A           84 GIRCLITSDIDVAIITGRRAKLLEDRA-NTLGITHLYQGQ------------SDKLVAYHELLATLQ--CQPEQVAYIGD  148 (211)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHH-HHHTCCEEECSC------------SSHHHHHHHHHHHHT--CCGGGEEEEEC
T ss_pred             HHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCchhhccc------------CChHHHHHHHHHHcC--cCcceEEEEcC
Confidence            899999999999999999988775554 557998777322            788999999999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh------hhhhhhhc
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL------EEFKPELY  158 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~------~~l~~~l~  158 (166)
                      +.+|+.+++++|+.++.. .+  .......+++++.+.      .++.+.++
T Consensus       149 s~nDi~~~~~ag~~~a~~-~~--~~~~~~~Ad~v~~~~~~~G~v~e~~~~ll  197 (211)
T 3ij5_A          149 DLIDWPVMAQVGLSVAVA-DA--HPLLLPKAHYVTRIKGGRGAVREVCDLIL  197 (211)
T ss_dssp             SGGGHHHHTTSSEEEECT-TS--CTTTGGGSSEECSSCTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCEEEeC-Cc--cHHHHhhCCEEEeCCCCCcHHHHHHHHHH
Confidence            999999999999875543 22  223445677777664      66777665

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=99.51  E-value=4.2e-16  Score=111.29  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=92.1

Q ss_pred             CCccchhHHHHHHHHHHC-CCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          23 GYNLAIGALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ...++||+.++|+.|++. |++++|+||++...+...+ +++|+.. +|+                     ..++++++ 
T Consensus        73 ~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~f~---------------------~~~~~~l~-  129 (197)
T 1q92_A           73 ELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPY-EKYAWVEKYFG---------------------PDFLEQIV-  129 (197)
T ss_dssp             TCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHH-HHHHHHHHHHC---------------------GGGGGGEE-
T ss_pred             cCCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHH-HHhchHHHhch---------------------HHHHHHhc-
Confidence            578999999999999999 9999999999877665454 4468888 884                     45678889 


Q ss_pred             CCCCCceEEEecCHhH----HHHHH-HcCCeEEEecCCCCCcccccccchhhCCh-hhhhhhhcCCCC
Q psy6288         101 KPQPSKCLVFEDAPNG----VLGAK-AAGMSCVMVPDPTVPKHRTEAADLVLNSL-EEFKPELYGLPP  162 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~D----i~~a~-~~G~~~i~v~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~  162 (166)
                       ++|++|+||||+..|    +.+|+ ++|+.++++.++.............++++ .++.++|.++.|
T Consensus       130 -~~~~~~~~vgDs~~dD~~~~~~a~~~aG~~~i~~~~~~~~~~~~~~~~~~v~~~~~~l~~~l~~~~~  196 (197)
T 1q92_A          130 -LTRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRP  196 (197)
T ss_dssp             -ECSCSTTSCCSEEEESCSCCCCSCSSCSSEEEEECCTTTTTCCCCTTCEEECCTTSCHHHHHHTTCC
T ss_pred             -cCCccEEEECcccccCCchhhhcccCCCceEEEecCcccccccccccchhhhhHHHHHHHHhccccC
Confidence             899999999999999    99999 99999999998765433222223368899 477777765543

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.48  E-value=3.5e-13  Score=97.65  Aligned_cols=105  Identities=10%  Similarity=-0.084  Sum_probs=81.0

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC-------CCCCccCCCCChHHHHHHHHH
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS-------ADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~-------~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      .++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|...+...       ..+....+++++..+..++++
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~  170 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIA-RAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAG  170 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHH
Confidence            57999999999999999999999999987775554 5579987775543321       000123356678889999998


Q ss_pred             cCC-CCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          98 FDE-KPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        98 ~~~-~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      ++. .+++++|++|||+.+|+.+++.+|+..+..
T Consensus       171 ~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~~~  204 (232)
T 3fvv_A          171 MGLALGDFAESYFYSDSVNDVPLLEAVTRPIAAN  204 (232)
T ss_dssp             TTCCGGGSSEEEEEECCGGGHHHHHHSSEEEEES
T ss_pred             cCCCcCchhheEEEeCCHhhHHHHHhCCCeEEEC
Confidence            871 036899999999999999999999887653

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.47  E-value=8.4e-16  Score=109.33  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=86.6

Q ss_pred             cCCccchhHHHHHHHHHHC-CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          22 LGYNLAIGALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ....++||+.++|+.|++. |++++|+||++...+...+ +.+|+   |+.+++++                 ++++++ 
T Consensus        70 ~~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l-~~~gl---f~~i~~~~-----------------~~~~~~-  127 (193)
T 2i7d_A           70 LDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVG-EKYRW---VEQHLGPQ-----------------FVERII-  127 (193)
T ss_dssp             TTCCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHH-HHHHH---HHHHHCHH-----------------HHTTEE-
T ss_pred             ccCccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHH-HHhCc---hhhhcCHH-----------------HHHHcC-
Confidence            3578999999999999999 9999999999877665555 44577   76665432                 688899 


Q ss_pred             CCCCCceEEEecCHhH----HHHHH-HcCCeEEEecCCCCCcccccccch-hhCCh-hhhhhhh
Q psy6288         101 KPQPSKCLVFEDAPNG----VLGAK-AAGMSCVMVPDPTVPKHRTEAADL-VLNSL-EEFKPEL  157 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~D----i~~a~-~~G~~~i~v~~~~~~~~~~~~~~~-~~~~~-~~l~~~l  157 (166)
                       ++|++|+||||+..|    +.+|+ ++|+.++++.++...... ..+.+ .++++ .++.+.|
T Consensus       128 -~~~~~~~~vgDs~~dD~~~i~~A~~~aG~~~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  189 (193)
T 2i7d_A          128 -LTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLV-LPPTRRRLLSWSDNWREIL  189 (193)
T ss_dssp             -ECSCGGGBCCSEEEESSSCCCSSCSSCSSEEEEECCGGGTTCC-CCTTSCEECSTTSCHHHHH
T ss_pred             -CCcccEEEECCchhhCcHHHhhcccccccceEEEEeccCcccc-cccchHHHhhHHHHHHHHh
Confidence             999999999999988    99999 999999999877443322 12344 58888 4444443

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.46  E-value=2.2e-14  Score=106.66  Aligned_cols=113  Identities=13%  Similarity=0.078  Sum_probs=83.4

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      .++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++   ....       .+...+       .
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~-~~~gl~~~f~~~~~~~---k~~~-------~k~~~~-------~  205 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVA-EELGLDDYFAEVLPHE---KAEK-------VKEVQQ-------K  205 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCSEEECSCCGGG---HHHH-------HHHHHT-------T
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCChhHhHhcCHHH---HHHH-------HHHHHh-------c
Confidence            68999999999999999999999999988775554 5579999998877665   2222       222222       2


Q ss_pred             CceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhhc
Q psy6288         105 SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPELY  158 (166)
Q Consensus       105 ~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l~  158 (166)
                      -+|++|||+.+|+.+++.+|+   +|.++.........+++++  +++.++...|.
T Consensus       206 ~~~~~vGD~~nDi~~~~~Ag~---~va~~~~~~~~~~~a~~~~~~~~~~~l~~~l~  258 (280)
T 3skx_A          206 YVTAMVGDGVNDAPALAQADV---GIAIGAGTDVAVETADIVLVRNDPRDVAAIVE  258 (280)
T ss_dssp             SCEEEEECTTTTHHHHHHSSE---EEECSCCSSSCCCSSSEECSSCCTHHHHHHHH
T ss_pred             CCEEEEeCCchhHHHHHhCCc---eEEecCCcHHHHhhCCEEEeCCCHHHHHHHHH
Confidence            378999999999999999995   4555543444334455544  89999887764

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.45  E-value=3.1e-14  Score=105.67  Aligned_cols=127  Identities=15%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHH--HHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFEL--KTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~--~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++++.+.+..++. +. ..++||........  .+....++..+|+.+++.+   .....||++.+++.+++++|  +
T Consensus       126 ~~~~~~~~~~~~l~~-~~-~~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~kp~~~~~~~~~~~lg--i  198 (266)
T 3pdw_A          126 ITYEKFAVGCLAIRN-GA-RFISTNGDIAIPTERGLLPGNGSLTSVLTVSTGVQ---PVFIGKPESIIMEQAMRVLG--T  198 (266)
T ss_dssp             CCHHHHHHHHHHHHT-TC-EEEESCCCCEEEETTEEEECHHHHHHHHHHHHCCC---CEECSTTSSHHHHHHHHHHT--C
T ss_pred             CCHHHHHHHHHHHHC-CC-eEEEEcCCceeECCCceEecchHHHHHHHHHhCCC---ccccCCCCHHHHHHHHHHcC--C
Confidence            456777777777765 44 45666655321100  0111123556677777777   78889999999999999999  9


Q ss_pred             CCCceEEEecC-HhHHHHHHHcCCeEEEecCCCCCcc-ccc---ccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDA-PNGVLGAKAAGMSCVMVPDPTVPKH-RTE---AADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~-~~Di~~a~~~G~~~i~v~~~~~~~~-~~~---~~~~~~~~~~~l~~~l~  158 (166)
                      +++++++|||+ .+|+.+|+.+|+.++++.+|....+ ...   .|+++++++.++.+.+.
T Consensus       199 ~~~~~~~iGD~~~~Di~~~~~aG~~~~~v~~g~~~~~~~~~~~~~~d~v~~~~~el~~~~~  259 (266)
T 3pdw_A          199 DVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREHMTDDMEKPTHAIDSLTEWIPYIE  259 (266)
T ss_dssp             CGGGEEEEESCTTTHHHHHHHHTCEEEEECCC------CCTTSCCCSEEESSGGGGHHHHH
T ss_pred             ChhhEEEECCCcHHHHHHHHHCCCeEEEECCCCCChHHHHhcCCCCCEEeCCHHHHHHHhh
Confidence            99999999999 6999999999999999999976554 222   59999999999987653

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.34  E-value=2.2e-12  Score=90.07  Aligned_cols=106  Identities=14%  Similarity=0.080  Sum_probs=77.5

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhh-hcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEe
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSR-HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFE  111 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~-~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IG  111 (166)
                      .|+.|++.|++++|+||.  ..+...+.+ .+|+. +|    .+        .++++..++.++++++  +++++|+|||
T Consensus        44 ~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lgi~-~~----~g--------~~~K~~~l~~~~~~~g--i~~~~~~~vG  106 (168)
T 3ewi_A           44 GISLLKKSGIEVRLISER--ACSKQTLSALKLDCK-TE----VS--------VSDKLATVDEWRKEMG--LCWKEVAYLG  106 (168)
T ss_dssp             HHHHHHHTTCEEEEECSS--CCCHHHHHTTCCCCC-EE----CS--------CSCHHHHHHHHHHHTT--CCGGGEEEEC
T ss_pred             HHHHHHHCCCEEEEEeCc--HHHHHHHHHhCCCcE-EE----EC--------CCChHHHHHHHHHHcC--cChHHEEEEe
Confidence            699999999999999999  445444432 34554 32    22        2567999999999999  9999999999


Q ss_pred             cCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhhhhhhhc
Q psy6288         112 DAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEEFKPELY  158 (166)
Q Consensus       112 D~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~l~~~l~  158 (166)
                      |+.+|+.+++.+|+.++ +..+  .......+++++.+      +.++.++++
T Consensus       107 D~~nDi~~~~~ag~~~a-~~na--~~~~k~~Ad~v~~~~~~~G~~~~~~~~il  156 (168)
T 3ewi_A          107 NEVSDEECLKRVGLSAV-PADA--CSGAQKAVGYICKCSGGRGAIREFAEHIF  156 (168)
T ss_dssp             CSGGGHHHHHHSSEEEE-CTTC--CHHHHTTCSEECSSCTTTTHHHHHHHHHH
T ss_pred             CCHhHHHHHHHCCCEEE-eCCh--hHHHHHhCCEEeCCCCCccHHHHHHHHHH
Confidence            99999999999998854 4333  23344556666654      444555544

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=99.30  E-value=2.6e-12  Score=96.45  Aligned_cols=119  Identities=13%  Similarity=0.157  Sum_probs=90.2

Q ss_pred             ccchhHHHHHHHHHHC-CCCEEEEeCC---------------------chhhHHHHHhhhcCcccccceE----------
Q psy6288          25 NLAIGALRLINHLHKH-NIPFAIATSS---------------------AKESFELKTSRHKDTLKLFHHV----------   72 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~-g~~i~ivS~~---------------------~~~~~~~~l~~~~gl~~~fd~v----------   72 (166)
                      .+++++.++++.+++. |+++++.|+.                     ....+. .+.+..|+..+|..+          
T Consensus       122 ~~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~~~~~~~  200 (289)
T 3gyg_A          122 FSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIE-KICEEYGVSVNINRCNPLAGDPEDS  200 (289)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHHHH-HHHHHHTEEEEEEECCGGGTCCTTE
T ss_pred             CCHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHHHH-HHHHHcCCCEEEEEccccccCCCCc
Confidence            5678999999999887 9999999977                     333343 333445887777654          


Q ss_pred             EecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          73 VLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        73 ~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      .+.+   .....++++..++.++++++  +++++|++|||+.+|+.+++.+|+. +.+  +.........+++++.+..+
T Consensus       201 ~~~~---~~~~~~~k~~~~~~~~~~~~--~~~~~~~~~GDs~~D~~~~~~ag~~-~~~--~~~~~~~~~~a~~v~~~~~~  272 (289)
T 3gyg_A          201 YDVD---FIPIGTGKNEIVTFMLEKYN--LNTERAIAFGDSGNDVRMLQTVGNG-YLL--KNATQEAKNLHNLITDSEYS  272 (289)
T ss_dssp             EEEE---EEESCCSHHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHTTSSEE-EEC--TTCCHHHHHHCCCBCSSCHH
T ss_pred             eEEE---EEeCCCCHHHHHHHHHHHcC--CChhhEEEEcCCHHHHHHHHhCCcE-EEE--CCccHHHHHhCCEEcCCCCc
Confidence            4555   56678899999999999999  9999999999999999999999944 333  33334444567788777554

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=99.29  E-value=1.4e-11  Score=86.39  Aligned_cols=107  Identities=15%  Similarity=0.063  Sum_probs=79.9

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCc---hhh--HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSA---KES--FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK   96 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~--~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~   96 (166)
                      ....++||+.++|+.|++. ++++|+||+.   ...  ....+.+.++...+|+.+++++   ..               
T Consensus        66 ~~~~~~pg~~e~L~~L~~~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~~~~i~~~~---~~---------------  126 (180)
T 3bwv_A           66 RNLDVMPHAQEVVKQLNEH-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQHFVFCGR---KN---------------  126 (180)
T ss_dssp             GSCCBCTTHHHHHHHHTTT-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCGGGEEECSC---GG---------------
T ss_pred             ccCCCCcCHHHHHHHHHhc-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCcccEEEeCC---cC---------------
Confidence            4578999999999999985 9999999983   211  1233444456667788888877   31               


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                        .  +  ++|++|||++.++.  ..+| .++++.++....   ..++++++++.++..+|.+
T Consensus       127 --~--l--~~~l~ieDs~~~i~--~aaG-~~i~~~~~~~~~---~~~~~~i~~~~el~~~l~~  177 (180)
T 3bwv_A          127 --I--I--LADYLIDDNPKQLE--IFEG-KSIMFTASHNVY---EHRFERVSGWRDVKNYFNS  177 (180)
T ss_dssp             --G--B--CCSEEEESCHHHHH--HCSS-EEEEECCGGGTT---CCSSEEECSHHHHHHHHHH
T ss_pred             --e--e--cccEEecCCcchHH--HhCC-CeEEeCCCcccC---CCCceecCCHHHHHHHHHH
Confidence              1  2  66999999999985  4589 999998774322   4577899999999887754

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.28  E-value=1.7e-13  Score=98.00  Aligned_cols=98  Identities=8%  Similarity=0.068  Sum_probs=84.3

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|++|++. +.++|+|++....+... .+.+++..+|+.+++.+   ++...|   ..|.+.++++|  .+
T Consensus        67 v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~a~~v-l~~ld~~~~f~~~l~rd---~~~~~k---~~~lK~L~~Lg--~~  136 (195)
T 2hhl_A           67 VLKRPHVDEFLQRMGQL-FECVLFTASLAKYADPV-ADLLDRWGVFRARLFRE---SCVFHR---GNYVKDLSRLG--RE  136 (195)
T ss_dssp             EEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHH-HHHHCCSSCEEEEECGG---GCEEET---TEEECCGGGSS--SC
T ss_pred             EEeCcCHHHHHHHHHcC-CeEEEEcCCCHHHHHHH-HHHhCCcccEEEEEEcc---cceecC---CceeeeHhHhC--CC
Confidence            45799999999999998 99999999998877554 45579999999999888   666555   56788899999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      +++|++|||+..++.++.++|+....+.
T Consensus       137 ~~~~vivDDs~~~~~~~~~ngi~i~~~~  164 (195)
T 2hhl_A          137 LSKVIIVDNSPASYIFHPENAVPVQSWF  164 (195)
T ss_dssp             GGGEEEEESCGGGGTTCGGGEEECCCCS
T ss_pred             hhHEEEEECCHHHhhhCccCccEEeeec
Confidence            9999999999999999999999875443

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.22  E-value=5.9e-13  Score=94.10  Aligned_cols=95  Identities=7%  Similarity=0.086  Sum_probs=81.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|++|++. +.++|+|++....+... .+.++...+|+.+++.+   ++...|   ..|.+.++++|  .+
T Consensus        54 v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~a~~v-l~~ld~~~~f~~~~~rd---~~~~~k---~~~~k~L~~Lg--~~  123 (181)
T 2ght_A           54 VLKRPHVDEFLQRMGEL-FECVLFTASLAKYADPV-ADLLDKWGAFRARLFRE---SCVFHR---GNYVKDLSRLG--RD  123 (181)
T ss_dssp             EEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHH-HHHHCTTCCEEEEECGG---GSEEET---TEEECCGGGTC--SC
T ss_pred             EEeCCCHHHHHHHHHhC-CCEEEEcCCCHHHHHHH-HHHHCCCCcEEEEEecc---CceecC---CcEeccHHHhC--CC
Confidence            46799999999999997 99999999998877554 45679989999999887   665443   45778889999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEE
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                      +++|++|||+..++.++.++|+...
T Consensus       124 ~~~~vivdDs~~~~~~~~~ngi~i~  148 (181)
T 2ght_A          124 LRRVLILDNSPASYVFHPDNAVPVA  148 (181)
T ss_dssp             GGGEEEECSCGGGGTTCTTSBCCCC
T ss_pred             cceEEEEeCCHHHhccCcCCEeEec
Confidence            9999999999999999999999853

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.20  E-value=3.2e-11  Score=89.68  Aligned_cols=99  Identities=9%  Similarity=0.074  Sum_probs=73.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCcc--cccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDTL--KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl~--~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ..++||+.++|+.|++.|++++|+||++   ...+...+ +.+|+.  .+|+.+++.+   ..  .||.+  ...+ .+.
T Consensus       100 ~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L-~~~Gl~~v~~~~vi~~~~---~~--~K~~~--~~~~-~~~  170 (258)
T 2i33_A          100 AEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNL-ERVGAPQATKEHILLQDP---KE--KGKEK--RREL-VSQ  170 (258)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHH-HHHTCSSCSTTTEEEECT---TC--CSSHH--HHHH-HHH
T ss_pred             CCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHH-HHcCCCcCCCceEEECCC---CC--CCcHH--HHHH-HHh
Confidence            6789999999999999999999999998   33343444 446888  7787777766   32  35443  3332 233


Q ss_pred             CCCCCCCceEEEecCHhHHHHHH-------H---------cCCeEEEecCCCC
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAK-------A---------AGMSCVMVPDPTV  135 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~-------~---------~G~~~i~v~~~~~  135 (166)
                      +    .+.|+||||+.+|+.+|+       +         +|+.++.+.++..
T Consensus       171 ~----~~~~l~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~lpn~~y  219 (258)
T 2i33_A          171 T----HDIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMY  219 (258)
T ss_dssp             H----EEEEEEEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEECCCCSS
T ss_pred             C----CCceEEeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEECCCCCc
Confidence            4    344999999999999993       4         7999999988843

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=99.12  E-value=3.7e-10  Score=91.01  Aligned_cols=106  Identities=14%  Similarity=0.068  Sum_probs=78.8

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC-------------cccccceEEecCCCCCccC-CCC----
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD-------------TLKLFHHVVLGSADPEVKQ-GKP----   86 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g-------------l~~~fd~v~~~~~~~~~~~-~Kp----   86 (166)
                      ...|.+..+|++|++.| +++++||+....+.......+|             +.++||.|+.....|.... ..|    
T Consensus       246 ~kdp~l~~~L~~Lr~~G-KlfLiTNS~~~yv~~~m~yllg~~~~~~~~~~~~dWrdlFD~vI~~A~KP~FF~~~~pfr~V  324 (555)
T 2jc9_A          246 VKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQV  324 (555)
T ss_dssp             CCCTHHHHHHHHHHHHS-EEEEECSSCHHHHHHHHHHHTCSSSSSSTTSCCCCGGGGCSEEEESCCTTGGGTTCCCEEEE
T ss_pred             CCChHHHHHHHHHHHcC-CEEEEeCCChHHHHHHHHHhcCCCccccccccccchhhhCCEEEEeCCCCCcccCCCcceEe
Confidence            34679999999999999 9999999998766444333335             5689999766652221100 000    


Q ss_pred             -----------------ChHH-----HHHHHHHcCCCCCCCceEEEecCH-hHHHHHH-HcCCeEEEecCC
Q psy6288          87 -----------------APDV-----FLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAK-AAGMSCVMVPDP  133 (166)
Q Consensus        87 -----------------~~~~-----~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~-~~G~~~i~v~~~  133 (166)
                                       ....     +..+++.+|  +..++++||||.+ +||..++ ..|+.+++|...
T Consensus       325 d~~tg~l~~~~~~~~l~~g~vY~gGn~~~~~~llg--~~g~eVLYVGDhIftDIl~~kk~~GWrTiLViPE  393 (555)
T 2jc9_A          325 DTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLG--AKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPE  393 (555)
T ss_dssp             ETTTTEECSSCCCSCCCTTCCEEECCHHHHHHHHT--CCGGGEEEEESCCCCCCHHHHHHHCCEEEEECTT
T ss_pred             ecCCCccccccccccccCCceeccCCHHHHHHHhC--CCCCeEEEECCEehHhHHhHHhhcCeEEEEEEec
Confidence                             0011     588999999  9999999999999 9999997 899999999765

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=99.07  E-value=1.4e-10  Score=89.83  Aligned_cols=78  Identities=15%  Similarity=0.249  Sum_probs=63.5

Q ss_pred             cCCCCChHHHHHHHHHc----------------------CC---CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCC
Q psy6288          82 KQGKPAPDVFLVAAKRF----------------------DE---KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTV  135 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~----------------------~~---~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~  135 (166)
                      ..+||.+.+|+.+.+.+                      +.   ..++++++||||++ +||.+|+++|+.+++|.+|..
T Consensus       243 ~~GKP~~~~y~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~ti~V~~G~~  322 (352)
T 3kc2_A          243 TLGKPTKLTYDFAHHVLIDWEKRLSGKIGQSVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGAQNYGWNSCLVKTGVY  322 (352)
T ss_dssp             ECSTTCHHHHHHHHHHHHHHHHHHHC--------------CCTTTTTSSEEEEEESCTTTHHHHHHHHTCEEEECSSSSC
T ss_pred             EecCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccccCCCcceEEEEecCcHHHHHHHHHcCCEEEEEccCCC
Confidence            46899999999886654                      20   02679999999999 699999999999999999865


Q ss_pred             Ccc---cccccchhhCChhhhhhhhcC
Q psy6288         136 PKH---RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       136 ~~~---~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ...   ....|+++++++.++.+++++
T Consensus       323 ~~~~~~~~~~pd~vi~~l~el~~~il~  349 (352)
T 3kc2_A          323 NEGDDLKECKPTLIVNDVFDAVTKTLE  349 (352)
T ss_dssp             CTTCCCTTCCCSEECSSHHHHHHHHHH
T ss_pred             CcccccccCCCCEEECCHHHHHHHHHH
Confidence            443   246789999999999998763

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=99.06  E-value=8.9e-10  Score=81.43  Aligned_cols=130  Identities=12%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCch------hhHHHHHhhhcCc-------------ccccceEEecCC-------
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAK------ESFELKTSRHKDT-------------LKLFHHVVLGSA-------   77 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~------~~~~~~l~~~~gl-------------~~~fd~v~~~~~-------   77 (166)
                      ....+++.++++.+++.|+.+.+.|+...      ........+.+++             ..+|+.++.++.       
T Consensus        84 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  163 (261)
T 2rbk_A           84 AIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVL  163 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECSSCEEEESCCHHHHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHG
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEeCCcEEEeCccHHHHHHHHHhhcccCCCccccchhccCceeEEEEEeCHHHHHHHH
Confidence            34568899999999988999888876542      1121011111221             233333333220       


Q ss_pred             -----------CC----CccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccc
Q psy6288          78 -----------DP----EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA  142 (166)
Q Consensus        78 -----------~~----~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~  142 (166)
                                 .+    -....+|++..++.++++++  +++++|++|||+.+|+.+++.+|+..+ +  +.........
T Consensus       164 ~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~--~~~~~~~~iGD~~nD~~~~~~ag~~v~-~--~n~~~~~~~~  238 (261)
T 2rbk_A          164 PSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFG--IKLEETMSFGDGGNDISMLRHAAIGVA-M--GQAKEDVKAA  238 (261)
T ss_dssp             GGSTTCEEECSSTTCCEEESTTCSHHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHSSEEEE-C--TTSCHHHHHH
T ss_pred             HhcCCeEEEEecCCeEEecCCCCChHHHHHHHHHHcC--CCHHHEEEECCCHHHHHHHHHcCceEE-e--cCccHHHHhh
Confidence                       00    14557889999999999999  999999999999999999999998433 3  3333334467


Q ss_pred             cchhhCChhh--hhhhhc
Q psy6288         143 ADLVLNSLEE--FKPELY  158 (166)
Q Consensus       143 ~~~~~~~~~~--l~~~l~  158 (166)
                      +++++.+..+  +...|.
T Consensus       239 a~~v~~~~~~dGv~~~l~  256 (261)
T 2rbk_A          239 ADYVTAPIDEDGISKAMK  256 (261)
T ss_dssp             SSEECCCGGGTHHHHHHH
T ss_pred             CCEEeccCchhhHHHHHH
Confidence            8889999988  777654

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=98.92  E-value=6.3e-09  Score=77.32  Aligned_cols=66  Identities=20%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      ....+++..++.+++++|  ++++++++|||+.+|+.+++.+|   ++|..+.........+++++.+..+
T Consensus       193 ~~~~~K~~~l~~l~~~lg--i~~~~~i~~GD~~NDi~m~~~ag---~~vam~na~~~~k~~A~~v~~~~~e  258 (279)
T 4dw8_A          193 PQGIDKALSLSVLLENIG--MTREEVIAIGDGYNDLSMIKFAG---MGVAMGNAQEPVKKAADYITLTNDE  258 (279)
T ss_dssp             CTTCCHHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHSS---EEEECTTSCHHHHHHCSEECCCGGG
T ss_pred             cCCCChHHHHHHHHHHcC--CCHHHEEEECCChhhHHHHHHcC---cEEEcCCCcHHHHHhCCEEcCCCCC
Confidence            345677999999999999  99999999999999999999999   4555555455555667887777543

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=98.91  E-value=4.9e-09  Score=76.21  Aligned_cols=116  Identities=18%  Similarity=0.080  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHH-HC-CCCE-----------EEEe-CCchhhHHHHHhhhcCcccccceEEecCCCC-CccCCCCChHHHH
Q psy6288          28 IGALRLINHLH-KH-NIPF-----------AIAT-SSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPAPDVFL   92 (166)
Q Consensus        28 ~g~~~~l~~l~-~~-g~~i-----------~ivS-~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~~~Kp~~~~~~   92 (166)
                      +.+.++++.++ +. |+.+           ++++ +.....+. .+.+.++  ..|+.+ ++...- .....+|++..++
T Consensus        84 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~~~ei~~~~~~K~~~~~  159 (231)
T 1wr8_A           84 DEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVR-EIINELN--LNLVAV-DSGFAIHVKKPWINKGSGIE  159 (231)
T ss_dssp             SHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHH-HHHHHTT--CSCEEE-ECSSCEEEECTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEecCCCceeeEEEECCCCCHHHHH-HHHHhcC--CcEEEE-ecCcEEEEecCCCChHHHHH
Confidence            78888888888 65 6654           5666 33444443 3334333  456655 442000 2345789999999


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      .++++++  ++++++++|||+.+|+.+++.+|+. +.+.++  .......+++++.+..+
T Consensus       160 ~~~~~~~--~~~~~~~~iGD~~nD~~~~~~ag~~-v~~~~~--~~~~~~~a~~v~~~~~e  214 (231)
T 1wr8_A          160 KASEFLG--IKPKEVAHVGDGENDLDAFKVVGYK-VAVAQA--PKILKENADYVTKKEYG  214 (231)
T ss_dssp             HHHHHHT--SCGGGEEEEECSGGGHHHHHHSSEE-EECTTS--CHHHHTTCSEECSSCHH
T ss_pred             HHHHHcC--CCHHHEEEECCCHHHHHHHHHcCCe-EEecCC--CHHHHhhCCEEecCCCc
Confidence            9999999  9999999999999999999999998 556554  23334467888877654

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.85  E-value=8.2e-09  Score=85.77  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=81.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++.|++.+.++.|++.|++++++|+.....+. .+.+.+|+..+|..+            .  |+.-..++++++  .
T Consensus       455 ~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~-~ia~~lgi~~~~~~~------------~--P~~K~~~v~~l~--~  517 (645)
T 3j08_A          455 SDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE-AISRELNLDLVIAEV------------L--PHQKSEEVKKLQ--A  517 (645)
T ss_dssp             ECCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHH-HHHHHHTCSEEECSC------------C--TTCHHHHHHHHT--T
T ss_pred             cCCchhHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHcCCCEEEEeC------------C--HHhHHHHHHHHh--h
Confidence            3568999999999999999999999999987764 444556886544221            1  112345666676  4


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l  157 (166)
                      . ++++||||+.+|+.+.+.+|+   +|..+.........+|+++  +++..+...+
T Consensus       518 ~-~~v~~vGDg~ND~~al~~A~v---giamg~g~~~a~~~AD~vl~~~~~~~i~~~i  570 (645)
T 3j08_A          518 K-EVVAFVGDGINDAPALAQADL---GIAVGSGSDVAVESGDIVLIRDDLRDVVAAI  570 (645)
T ss_dssp             T-CCEEEEECSSSCHHHHHHSSE---EEEECCCSCCSSCCSSSEESSCCTTHHHHHH
T ss_pred             C-CeEEEEeCCHhHHHHHHhCCE---EEEeCCCcHHHHHhCCEEEecCCHHHHHHHH
Confidence            4 899999999999999999994   3333322333445667776  6777766554

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=98.85  E-value=1e-08  Score=74.61  Aligned_cols=130  Identities=11%  Similarity=0.048  Sum_probs=88.8

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-----ceEEecCCCCC-------
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-----HHVVLGSADPE-------   80 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-----d~v~~~~~~~~-------   80 (166)
                      .|+++.+.  ...+-|.+.++|++|+++|++++++|+.+...+...+.+ +++..++     ..+...... .       
T Consensus        10 ~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~-l~~~~~~I~~NGa~i~~~~~~-~i~~~~~l   87 (227)
T 1l6r_A           10 IDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIF-LGINGPVFGENGGIMFDNDGS-IKKFFSNE   87 (227)
T ss_dssp             EEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHH-HTCCSCEEEGGGTEEECTTSC-EEESSCSH
T ss_pred             EECCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCcHHHHHHHHH-hCCCCeEEEeCCcEEEeCCCC-EEEEeccH
Confidence            45666444  345678999999999999999999999998777555433 4654311     001100000 0       


Q ss_pred             ------------------------------------------------------------ccCCCCChHHHHHHHHHcCC
Q psy6288          81 ------------------------------------------------------------VKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        81 ------------------------------------------------------------~~~~Kp~~~~~~~~~~~~~~  100 (166)
                                                                                  .....++...++.++++++ 
T Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~~~-  166 (227)
T 1l6r_A           88 GTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYS-  166 (227)
T ss_dssp             HHHHHHHHHTTTSSCBCCGGGGGCSSSEEEBCCGGGHHHHHHHHHTTTEEEEEETTEEEEEETTCSHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhcCCccccccceecccceEEecCCHHHHHHHHHhcCEEEEecCcEEEEecCCCCHHHHHHHHHHHhC-
Confidence                                                                        0223556888999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE  151 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~  151 (166)
                       ++++++++|||+.+|+.+++.+|+. +.+.++  .......+++++.+..
T Consensus       167 -~~~~~~~~iGD~~nD~~m~~~ag~~-va~~n~--~~~~k~~a~~v~~~~~  213 (227)
T 1l6r_A          167 -LEYDEILVIGDSNNDMPMFQLPVRK-ACPANA--TDNIKAVSDFVSDYSY  213 (227)
T ss_dssp             -CCGGGEEEECCSGGGHHHHTSSSEE-EECTTS--CHHHHHHCSEECSCCT
T ss_pred             -cCHHHEEEECCcHHhHHHHHHcCce-EEecCc--hHHHHHhCCEEecCCC
Confidence             9999999999999999999999985 455443  2333345677776643

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.77  E-value=4.3e-08  Score=73.16  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      ....+++.+++.+++++|  +++++|++|||+.+|+.+++.+|+.   |.-+.........+++++.+..+
T Consensus       198 ~~~~~K~~~l~~l~~~lg--i~~~~~i~~GD~~NDi~m~~~ag~~---vam~na~~~~k~~Ad~v~~s~~e  263 (290)
T 3dnp_A          198 PKGVSKEAGLALVASELG--LSMDDVVAIGHQYDDLPMIELAGLG---VAMGNAVPEIKRKADWVTRSNDE  263 (290)
T ss_dssp             ETTCCHHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHHSSEE---EECTTSCHHHHHHSSEECCCTTT
T ss_pred             ECCCCHHHHHHHHHHHcC--CCHHHEEEECCchhhHHHHHhcCCE---EEecCCcHHHHHhcCEECCCCCc
Confidence            345667999999999999  9999999999999999999999963   33343344455677888777665

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=98.76  E-value=6.2e-09  Score=77.40  Aligned_cols=107  Identities=13%  Similarity=0.097  Sum_probs=71.5

Q ss_pred             HHCCCCEEEEeCCchhhHHHHHhhhcC--cccccceEEecCCC-CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH
Q psy6288          38 HKHNIPFAIATSSAKESFELKTSRHKD--TLKLFHHVVLGSAD-PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP  114 (166)
Q Consensus        38 ~~~g~~i~ivS~~~~~~~~~~l~~~~g--l~~~fd~v~~~~~~-~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~  114 (166)
                      ++.++++.++++...  . ..+.+.++  +...|+.+.++... +-....++++..++.+++.++  ++++++++|||+.
T Consensus       143 ~~~~~ki~i~~~~~~--~-~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~l~~~l~--i~~~~~~~~GD~~  217 (271)
T 1rlm_A          143 DDVLFKFSLNLPDEQ--I-PLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWD--LSPQNVVAIGDSG  217 (271)
T ss_dssp             CSCEEEEEEECCGGG--H-HHHHHHHHHHTTTSSEEEECSTTEEEEECTTCSHHHHHHHHHHHHT--CCGGGEEEEECSG
T ss_pred             CCceEEEEEEcCHHH--H-HHHHHHHHHHcCCcEEEEeccCCeEEEEcCCCChHHHHHHHHHHhC--CCHHHEEEECCcH
Confidence            345677888876542  2 22222222  34456655555200 023457888999999999999  9999999999999


Q ss_pred             hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288         115 NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus       115 ~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      +|+.+++.+|+. +.+..+  .......+++++.+..+
T Consensus       218 nD~~m~~~ag~~-va~~na--~~~~k~~a~~v~~~~~~  252 (271)
T 1rlm_A          218 NDAEMLKMARYS-FAMGNA--AENIKQIARYATDDNNH  252 (271)
T ss_dssp             GGHHHHHHCSEE-EECTTC--CHHHHHHCSEECCCGGG
T ss_pred             HHHHHHHHcCCe-EEeCCc--cHHHHHhCCeeCcCCCC
Confidence            999999999985 345433  23334567777777544

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=98.75  E-value=3.3e-09  Score=78.72  Aligned_cols=85  Identities=13%  Similarity=0.013  Sum_probs=60.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchh----hHHHHHhhhcCcccccc-eEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE----SFELKTSRHKDTLKLFH-HVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~----~~~~~l~~~~gl~~~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ..+++||+.++|+.|++.|++++++||.+..    .....+. .+|+..+++ .++...   .   ...+...+..+.++
T Consensus        99 ~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~-~lGi~~~~~~~Lilr~---~---~~~K~~~r~~l~~~  171 (262)
T 3ocu_A           99 QSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMK-RLGFNGVEESAFYLKK---D---KSAKAARFAEIEKQ  171 (262)
T ss_dssp             CCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHH-HHTCSCCSGGGEEEES---S---CSCCHHHHHHHHHT
T ss_pred             CCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHH-HcCcCcccccceeccC---C---CCChHHHHHHHHhc
Confidence            5789999999999999999999999998653    4444454 469987763 444433   1   12234555555544


Q ss_pred             cCCCCCCCceEEEecCHhHHHH
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLG  119 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~  119 (166)
                       |  .  .-+++|||.+.|+.+
T Consensus       172 -G--y--~iv~~vGD~~~Dl~~  188 (262)
T 3ocu_A          172 -G--Y--EIVLYVGDNLDDFGN  188 (262)
T ss_dssp             -T--E--EEEEEEESSGGGGCS
T ss_pred             -C--C--CEEEEECCChHHhcc
Confidence             4  2  349999999999998

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=98.74  E-value=3.7e-08  Score=72.77  Aligned_cols=67  Identities=9%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      ....++++..++.+++++|  ++++++++|||+.+|+.+++.+|+   +|..+....+....+++++.+..+
T Consensus       195 ~~~~~~K~~~l~~l~~~lg--i~~~~~i~~GD~~NDi~m~~~ag~---~vam~na~~~~k~~A~~v~~~~~e  261 (274)
T 3fzq_A          195 IQKDFHKGKAIKRLQERLG--VTQKETICFGDGQNDIVMFQASDV---TIAMKNSHQQLKDIATSICEDIFD  261 (274)
T ss_dssp             EETTCSHHHHHHHHHHHHT--CCSTTEEEECCSGGGHHHHHTCSE---EEEETTSCHHHHHHCSEEECCGGG
T ss_pred             eeCCCCHHHHHHHHHHHcC--CCHHHEEEECCChhHHHHHHhcCc---eEEecCccHHHHHhhhheeCCCch
Confidence            3456778999999999999  999999999999999999999994   444454445555667888777654

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=98.74  E-value=6.2e-09  Score=77.16  Aligned_cols=98  Identities=10%  Similarity=0.011  Sum_probs=67.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchh----hHHHHHhhhcCcccccc-eEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE----SFELKTSRHKDTLKLFH-HVVLGSADPEVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~----~~~~~l~~~~gl~~~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~   97 (166)
                      ..+++||+.++|+.|++.|++++++||.+..    .....+.+ +|+..+++ .++...   .    ++.+...+..+.+
T Consensus        99 ~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~-lGi~~~~~~~Lilr~---~----~~~K~~~r~~L~~  170 (260)
T 3pct_A           99 QSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKR-LGFTGVNDKTLLLKK---D----KSNKSVRFKQVED  170 (260)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHH-HTCCCCSTTTEEEES---S----CSSSHHHHHHHHT
T ss_pred             CCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHH-cCcCccccceeEecC---C----CCChHHHHHHHHh
Confidence            4789999999999999999999999998653    45445544 69988774 343332   1    2334444444555


Q ss_pred             cCCCCCCCceEEEecCHhHHHH--------HHHcCCeEEEecC
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLG--------AKAAGMSCVMVPD  132 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~--------a~~~G~~~i~v~~  132 (166)
                      .+    ..-+++|||+..|+.+        +|++++......+
T Consensus       171 ~g----y~iv~~iGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~f  209 (260)
T 3pct_A          171 MG----YDIVLFVGDNLNDFGDATYKKSNAERRDFVAKNSKAF  209 (260)
T ss_dssp             TT----CEEEEEEESSGGGGCGGGTTCCHHHHHHHHHHTGGGB
T ss_pred             cC----CCEEEEECCChHHcCcccccCCHHHHHHHHHHHHHHh
Confidence            45    3449999999999998        5665544433333

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=98.72  E-value=2.3e-08  Score=74.26  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=43.7

Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE  151 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~  151 (166)
                      .++..++.+++++|  ++++++++|||+.+|+.+++.+|+   +|..+....+....+++++.+..
T Consensus       197 ~K~~~l~~l~~~lg--i~~~~~i~~GD~~NDi~m~~~ag~---~vam~na~~~~k~~A~~v~~~~~  257 (279)
T 3mpo_A          197 SKGGTLSELVDQLG--LTADDVMTLGDQGNDLTMIKYAGL---GVAMGNAIDEVKEAAQAVTLTNA  257 (279)
T ss_dssp             CHHHHHHHHHHHTT--CCGGGEEEC--CCTTHHHHHHSTE---ECBC---CCHHHHHCSCBC----
T ss_pred             ChHHHHHHHHHHcC--CCHHHEEEECCchhhHHHHHhcCc---eeeccCCCHHHHHhcceeccCCC
Confidence            36899999999999  999999999999999999999994   45555444455566777776644

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.70  E-value=6.4e-08  Score=81.38  Aligned_cols=114  Identities=17%  Similarity=0.155  Sum_probs=80.8

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++.|++.+.++.|++.|++++++|+.....+. .+.+.+|+..+|    ..-        .  |.--..+.++++  .
T Consensus       533 ~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~a~-~ia~~lgi~~~~----~~~--------~--P~~K~~~v~~l~--~  595 (723)
T 3j09_A          533 SDTLKESAKPAVQELKRMGIKVGMITGDNWRSAE-AISRELNLDLVI----AEV--------L--PHQKSEEVKKLQ--A  595 (723)
T ss_dssp             ECCSCTTHHHHHHHHHHTTCEEEEECSSCHHHHH-HHHHHHTCSEEE----CSC--------C--TTCHHHHHHHHT--T
T ss_pred             cCCcchhHHHHHHHHHHCCCEEEEECCCCHHHHH-HHHHHcCCcEEE----ccC--------C--HHHHHHHHHHHh--c
Confidence            3578999999999999999999999999977764 444556886544    211        1  112355666676  4


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l  157 (166)
                      . ++++||||+.||+.+.+.+|+   +|.-+.........+|+++  +++..+...+
T Consensus       596 ~-~~v~~vGDg~ND~~al~~A~v---giamg~g~~~a~~~AD~vl~~~~~~~i~~~i  648 (723)
T 3j09_A          596 K-EVVAFVGDGINDAPALAQADL---GIAVGSGSDVAVESGDIVLIRDDLRDVVAAI  648 (723)
T ss_dssp             T-CCEEEEECSSTTHHHHHHSSE---EEECCCCSCCSSCCSSEECSSCCTTHHHHHH
T ss_pred             C-CeEEEEECChhhHHHHhhCCE---EEEeCCCcHHHHHhCCEEEeCCCHHHHHHHH
Confidence            4 899999999999999999994   3333322333446667776  6777666554

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=98.59  E-value=4.9e-07  Score=72.02  Aligned_cols=107  Identities=14%  Similarity=0.057  Sum_probs=77.1

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc--------CcccccceEEecCCCCC--------------cc-
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK--------DTLKLFHHVVLGSADPE--------------VK-   82 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~--------gl~~~fd~v~~~~~~~~--------------~~-   82 (166)
                      ..|.+..+|++|+++|.+++++||+...-......-.+        .+.++||.|++....|.              .+ 
T Consensus       187 k~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~M~y~~~~~~~~g~dWrdlFDvVIv~A~KP~FF~~~~~~~~v~~~~g~  266 (470)
T 4g63_A          187 REKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGT  266 (470)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHTGGGSCTTCCGGGGCSEEEESCCTTHHHHSCCCEEEECTTTCC
T ss_pred             CCHhHHHHHHHHHHcCCeEEEeeCCCchHHHHHHHhhcccCCCCCCChhhhcCEEEECCCCCCcccCCCcceEEECCCCc
Confidence            35889999999999999999999998765433332223        46789999988752111              00 


Q ss_pred             ------CCCCC---hHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHH-cCCeEEEecCCC
Q psy6288          83 ------QGKPA---PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKA-AGMSCVMVPDPT  134 (166)
Q Consensus        83 ------~~Kp~---~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~-~G~~~i~v~~~~  134 (166)
                            ..+|.   ..-.....+-+|  +...+++||||++ .||..++. .||.+++|...-
T Consensus       267 l~~~~~~~~~~vY~gGn~~~l~~llg--~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~Ii~EL  327 (470)
T 4g63_A          267 MTNVHGPIVPGVYQGGNAKKFTEDLG--VGGDEILYIGDHIYGDILRLKKDCNWRTALVVEEL  327 (470)
T ss_dssp             EEECCSSCCSEEEEECCHHHHHHHTT--CCGGGEEEEESCCCSCHHHHHHSCCCEEEEECTTH
T ss_pred             ccccccccCCceeecCcHHHHHHHhC--CCCCeEEEECCchHHHHHhhhhccCCeEEEEhHHH
Confidence                  00110   122456667778  8899999999999 99888886 599999998763

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=98.56  E-value=1.5e-07  Score=70.34  Aligned_cols=112  Identities=20%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             HCCCCEEEEe-CCchhhHHHHHhhhcCcccccceEEecCCCC-CccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhH
Q psy6288          39 KHNIPFAIAT-SSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNG  116 (166)
Q Consensus        39 ~~g~~i~ivS-~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~D  116 (166)
                      +..+++.++. ..........+.+.++  ..+..+.++...- -.....++..+++.+++++|  ++++++++|||+.+|
T Consensus       164 ~~~~ki~i~~~~~~~~~~~~~l~~~~~--~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lg--i~~~e~ia~GD~~ND  239 (283)
T 3dao_A          164 NDIIKFTVFHPDKCEELCTPVFIPAWN--KKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFD--LLPDEVCCFGDNLND  239 (283)
T ss_dssp             SCCCEEEEECSSCHHHHHTTTHHHHHT--TTEEEEEETTTEEEEEETTCCHHHHHHHHHHHTT--CCGGGEEEEECSGGG
T ss_pred             cCceEEEEEcChHHHHHHHHHHHHHhc--CCEEEEEecCceEEEeeCCCcHHHHHHHHHHHhC--CCHHHEEEECCCHHH
Confidence            5567888873 3322221122222222  3344444443000 12334557899999999999  999999999999999


Q ss_pred             HHHHHHcCCeEEEecCCCCCcccccccchhhCChhh--hhhhh
Q psy6288         117 VLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE--FKPEL  157 (166)
Q Consensus       117 i~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~--l~~~l  157 (166)
                      +.+++.+|+. +.+.++  ..+....+++++.+..+  +...|
T Consensus       240 i~ml~~ag~~-vam~na--~~~~k~~A~~v~~s~~edGv~~~l  279 (283)
T 3dao_A          240 IEMLQNAGIS-YAVSNA--RQEVIAAAKHTCAPYWENGVLSVL  279 (283)
T ss_dssp             HHHHHHSSEE-EEETTS--CHHHHHHSSEEECCGGGTHHHHHH
T ss_pred             HHHHHhCCCE-EEcCCC--CHHHHHhcCeECCCCCCChHHHHH
Confidence            9999999953 444333  34455677888777665  44444

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=98.48  E-value=2.2e-07  Score=78.20  Aligned_cols=114  Identities=13%  Similarity=0.088  Sum_probs=79.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ..++.|++.+.|+.|++.|++++++|+.....+. .+.+.+|+..++    ..-          .|+--..+.++++  .
T Consensus       552 ~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~a~-~ia~~lgi~~v~----a~~----------~P~~K~~~v~~l~--~  614 (736)
T 3rfu_A          552 EDPIKSSTPETILELQQSGIEIVMLTGDSKRTAE-AVAGTLGIKKVV----AEI----------MPEDKSRIVSELK--D  614 (736)
T ss_dssp             ECCBCSSHHHHHHHHHHHTCEEEEECSSCHHHHH-HHHHHHTCCCEE----CSC----------CHHHHHHHHHHHH--H
T ss_pred             eccchhhHHHHHHHHHHCCCeEEEECCCCHHHHH-HHHHHcCCCEEE----Eec----------CHHHHHHHHHHHH--h
Confidence            3578899999999999999999999999987664 444556886544    111          2444556666666  5


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhh
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPE  156 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~  156 (166)
                      ..+.++||||+.||+.+-+.+|+.. .+..+  .......+|+++  +++..+...
T Consensus       615 ~g~~V~~vGDG~ND~paL~~AdvGI-Amg~g--~d~a~~~AD~vl~~~~~~~i~~a  667 (736)
T 3rfu_A          615 KGLIVAMAGDGVNDAPALAKADIGI-AMGTG--TDVAIESAGVTLLHGDLRGIAKA  667 (736)
T ss_dssp             HSCCEEEEECSSTTHHHHHHSSEEE-EESSS--CSHHHHHCSEEECSCCSTTHHHH
T ss_pred             cCCEEEEEECChHhHHHHHhCCEEE-EeCCc--cHHHHHhCCEEEccCCHHHHHHH
Confidence            5678999999999999999999653 33333  222344556654  455555443

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=98.47  E-value=2.4e-07  Score=80.41  Aligned_cols=126  Identities=13%  Similarity=0.077  Sum_probs=83.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc----ceEEecCCCCCccC---------------
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF----HHVVLGSADPEVKQ---------------   83 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f----d~v~~~~~~~~~~~---------------   83 (166)
                      ..++.|++.++++.|++.|++++++|+.....+. .+.+.+|+....    +.+++++   +...               
T Consensus       601 ~D~lr~~~~~~I~~l~~~Gi~v~miTGD~~~ta~-~ia~~lgi~~~~~~i~~~~~~g~---~~~~l~~~~~~~~~~~~~v  676 (995)
T 3ar4_A          601 LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI-AICRRIGIFGENEEVADRAYTGR---EFDDLPLAEQREACRRACC  676 (995)
T ss_dssp             ECCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHTSSCTTCCCTTTEEEHH---HHHTSCHHHHHHHHHHCCE
T ss_pred             cCCCchhHHHHHHHHHHcCCEEEEECCCCHHHHH-HHHHHcCcCCCCCcccceEEEch---hhhhCCHHHHHHHHhhCcE
Confidence            3578999999999999999999999999977764 444556886432    1233332   1111               


Q ss_pred             -CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhh
Q psy6288          84 -GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus        84 -~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l  157 (166)
                       ..-.|.--..+.+.++  ...+.++|+||+.+|+.+.+++++.... ..+  .......+|+++  +++..+...+
T Consensus       677 ~~r~~P~~K~~~v~~l~--~~g~~v~~~GDG~ND~~alk~Advgiam-g~g--~~~ak~aAd~vl~~~~~~~i~~~i  748 (995)
T 3ar4_A          677 FARVEPSHKSKIVEYLQ--SYDEITAMTGDGVNDAPALKKAEIGIAM-GSG--TAVAKTASEMVLADDNFSTIVAAV  748 (995)
T ss_dssp             EESCCSSHHHHHHHHHH--TTTCCEEEEECSGGGHHHHHHSTEEEEE-TTS--CHHHHHTCSEEETTCCHHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHH--HCCCEEEEEcCCchhHHHHHHCCeEEEe-CCC--CHHHHHhCCEEECCCCHHHHHHHH
Confidence             1111334455556665  4467899999999999999999986543 333  122344567766  4577766554

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=98.44  E-value=8.7e-07  Score=66.74  Aligned_cols=64  Identities=23%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      ..++...++.+++++|  ++++++++|||+.+|+.+++.+|+.   |..+....+....+++++.+..+
T Consensus       226 ~~~K~~al~~l~~~lg--i~~~e~i~~GDs~NDi~m~~~ag~~---vam~na~~~~k~~Ad~v~~~~~e  289 (304)
T 3l7y_A          226 GLHKGWALQQLLKRWN--FTSDHLMAFGDGGNDIEMLKLAKYS---YAMANAPKNVKAAANYQAKSNDE  289 (304)
T ss_dssp             TCSHHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHHCTEE---EECTTSCHHHHHHCSEECCCGGG
T ss_pred             CCCHHHHHHHHHHHhC--cCHHHEEEECCCHHHHHHHHhcCCe---EEcCCcCHHHHHhccEEcCCCCc
Confidence            4556889999999999  9999999999999999999999943   44444444555677888888555

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=98.37  E-value=2.6e-07  Score=69.60  Aligned_cols=101  Identities=15%  Similarity=0.087  Sum_probs=64.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec----CCCC---------CccCCCCChH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG----SADP---------EVKQGKPAPD   89 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~----~~~~---------~~~~~Kp~~~   89 (166)
                      ..++.||+.++++.|+++|++++++|++....+. .+.+.+|+......+++.    +.+.         .....|+.+.
T Consensus       139 ~i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~i~-~i~~~~g~~~~~~~i~~n~l~~~~~~~~~~~~~~~i~~~~k~~~~  217 (297)
T 4fe3_A          139 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLE-EVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGA  217 (297)
T ss_dssp             CCCBCBTHHHHHHHHHHTTCCEEEEEEEEHHHHH-HHHHHTTCCCTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHcCCeEEEEeCCcHHHHH-HHHHHcCCCcccceEEeeeEEEcccceeEeccccccchhhcccHH
Confidence            4689999999999999999999999999877664 444546765432223222    1000         0111222222


Q ss_pred             HHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288          90 VFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      .-.....++.  ....+++|+||+.+|+.+++...-.
T Consensus       218 ~k~~~~~~~~--~~~~~v~~vGDGiNDa~m~k~l~~a  252 (297)
T 4fe3_A          218 LKNTDYFSQL--KDNSNIILLGDSQGDLRMADGVANV  252 (297)
T ss_dssp             HTCHHHHHHT--TTCCEEEEEESSGGGGGTTTTCSCC
T ss_pred             HHHHHHHHhh--ccCCEEEEEeCcHHHHHHHhCcccc
Confidence            2223334444  4678999999999999997754433

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=98.37  E-value=4.4e-06  Score=61.21  Aligned_cols=61  Identities=11%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      +...++.+++.+|  +++++|++|||+.+|+.+++.+|+..+ +.  ....+....+++++.+..+
T Consensus       184 K~~~l~~l~~~lg--i~~~~~ia~GDs~NDi~ml~~ag~~va-m~--na~~~~k~~A~~v~~~~~~  244 (258)
T 2pq0_A          184 KAEGIRMMIEKLG--IDKKDVYAFGDGLNDIEMLSFVGTGVA-MG--NAHEEVKRVADFVTKPVDK  244 (258)
T ss_dssp             HHHHHHHHHHHHT--CCGGGEEEECCSGGGHHHHHHSSEEEE-ET--TCCHHHHHTCSEEECCGGG
T ss_pred             hHHHHHHHHHHhC--CCHHHEEEECCcHHhHHHHHhCCcEEE-eC--CCcHHHHHhCCEEeCCCCc
Confidence            4678999999999  999999999999999999999999655 43  3333444567777766554

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.26  E-value=2.6e-06  Score=62.71  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=50.6

Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      ...++...++.+++++|  ++++++++|||+.+|+.+++.+|+.   |.-+....+....+++++.+..+
T Consensus       191 ~~~~K~~~l~~l~~~lg--i~~~~~ia~GD~~NDi~m~~~ag~~---vam~na~~~~k~~Ad~v~~~~~e  255 (268)
T 3r4c_A          191 AGTSKATGLSLFADYYR--VKVSEIMACGDGGNDIPMLKAAGIG---VAMGNASEKVQSVADFVTDTVDN  255 (268)
T ss_dssp             TTCCHHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHHSSEE---EECTTSCHHHHHTCSEECCCTTT
T ss_pred             CCCCHHHHHHHHHHHcC--CCHHHEEEECCcHHhHHHHHhCCCe---EEeCCCcHHHHHhcCEeeCCCCc
Confidence            34566899999999999  9999999999999999999999954   33343344445567777776544

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=98.20  E-value=8.7e-06  Score=63.66  Aligned_cols=100  Identities=9%  Similarity=-0.022  Sum_probs=60.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc--cceEEecC----CCCC----ccC--CCCChHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL--FHHVVLGS----ADPE----VKQ--GKPAPDVF   91 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~--fd~v~~~~----~~~~----~~~--~Kp~~~~~   91 (166)
                      .+++|++.++++.|+++|++++|||++....++ .+.+.+|+..-  -+.|++..    .++.    ...  .-.....-
T Consensus       220 ir~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~-~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~gK  298 (385)
T 4gxt_A          220 IRTLDEMVDLYRSLEENGIDCYIVSASFIDIVR-AFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREGK  298 (385)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEEEEEHHHHH-HHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHHH
T ss_pred             ceeCHHHHHHHHHHHHCCCeEEEEcCCcHHHHH-HHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCch
Confidence            357999999999999999999999999988774 44454554221  13333321    0000    000  01122222


Q ss_pred             HHHHHHcC-CCCCCCceEEEecCHhHHHHHHHcC
Q psy6288          92 LVAAKRFD-EKPQPSKCLVFEDAPNGVLGAKAAG  124 (166)
Q Consensus        92 ~~~~~~~~-~~~~~~~~i~IGD~~~Di~~a~~~G  124 (166)
                      ..+++++- .......++++|||.+|+.+-+..+
T Consensus       299 ~~~i~~~~~~~~~~~~i~a~GDs~~D~~ML~~~~  332 (385)
T 4gxt_A          299 VQTINKLIKNDRNYGPIMVGGDSDGDFAMLKEFD  332 (385)
T ss_dssp             HHHHHHHTCCTTEECCSEEEECSGGGHHHHHHCT
T ss_pred             HHHHHHHHHhcCCCCcEEEEECCHhHHHHHhcCc
Confidence            33333321 0034677999999999999999853

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=98.20  E-value=8.7e-07  Score=66.10  Aligned_cols=56  Identities=18%  Similarity=0.145  Sum_probs=43.9

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccc
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD  144 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~  144 (166)
                      ..++...++.+++.+|  ++++++++|||+.+|+.+++.+|+   +|.-+....+....++
T Consensus       207 ~~~K~~al~~l~~~lg--i~~~~~ia~GD~~NDi~ml~~ag~---~vAm~Na~~~vk~~A~  262 (285)
T 3pgv_A          207 GVSKGHALEAVAKMLG--YTLSDCIAFGDGMNDAEMLSMAGK---GCIMANAHQRLKDLHP  262 (285)
T ss_dssp             TCSHHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHHSSE---EEECTTSCHHHHHHCT
T ss_pred             CCChHHHHHHHHHHhC--CCHHHEEEECCcHhhHHHHHhcCC---EEEccCCCHHHHHhCC
Confidence            4557899999999999  999999999999999999999993   4444433344444444

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=98.08  E-value=9.1e-06  Score=70.86  Aligned_cols=126  Identities=15%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc------------------------cceEEecCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL------------------------FHHVVLGSAD   78 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~------------------------fd~v~~~~~~   78 (166)
                      ..++.|++.++|+.|+++|++++++|+.....+. .+.+.+|+...                        +..++.+.  
T Consensus       597 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~-~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~vi~G~--  673 (1028)
T 2zxe_A          597 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAK-AIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGS--  673 (1028)
T ss_dssp             ECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHH-HHHHHHTSSCTTCCCHHHHHHHTTCCGGGSCGGGCCEEEEEHH--
T ss_pred             CCCCChhHHHHHHHHHHcCCEEEEECCCCHHHHH-HHHHHcCCCCCCchhHHHHHhhcCcchhhccccccceEEEEcH--
Confidence            3578999999999999999999999999977664 44444576521                        01122221  


Q ss_pred             CC------------------ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccc
Q psy6288          79 PE------------------VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRT  140 (166)
Q Consensus        79 ~~------------------~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~  140 (166)
                       +                  .......|.--..+.+.++  .....+.|+||+.||+.+-+.+++....=..+.  ....
T Consensus       674 -~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iV~~lq--~~g~~V~~iGDG~ND~paLk~AdvGIAmg~~gt--d~ak  748 (1028)
T 2zxe_A          674 -DLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQ--RQGAIVAVTGDGVNDSPALKKADIGVAMGISGS--DVSK  748 (1028)
T ss_dssp             -HHTTCCHHHHHHHHHHCSEEEEESCCHHHHHHHHHHHH--HTTCCEEEEECSGGGHHHHHHSSEEEEESSSCC--HHHH
T ss_pred             -HhhhCCHHHHHHHHhhCCcEEEEEcCHHHHHHHHHHHH--hCCCEEEEEcCCcchHHHHHhCCceEEeCCccC--HHHH
Confidence             1                  0122334555555555554  334679999999999999999998765311231  1223


Q ss_pred             cccchhhC--Chhhhhhh
Q psy6288         141 EAADLVLN--SLEEFKPE  156 (166)
Q Consensus       141 ~~~~~~~~--~~~~l~~~  156 (166)
                      ..+|+++.  ++..+...
T Consensus       749 ~aAD~Vl~~~~~~~I~~~  766 (1028)
T 2zxe_A          749 QAADMILLDDNFASIVTG  766 (1028)
T ss_dssp             HHCSEEETTCCTHHHHHH
T ss_pred             HhcCEEecCCCHHHHHHH
Confidence            44565543  35555443

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=98.06  E-value=3.3e-06  Score=62.49  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh--hhhhhc
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE--FKPELY  158 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~--l~~~l~  158 (166)
                      ..+++..++.++++++  +++++|++|||+.+|+.+++.+|+. +.+  +.........+++++.+..+  +...|.
T Consensus       188 ~~~K~~~~~~~~~~~~--~~~~~~~~~GD~~nD~~~~~~ag~~-v~~--~n~~~~~~~~a~~v~~~~~~dGv~~~i~  259 (268)
T 1nf2_A          188 NVDKGKALRFLRERMN--WKKEEIVVFGDNENDLFMFEEAGLR-VAM--ENAIEKVKEASDIVTLTNNDSGVSYVLE  259 (268)
T ss_dssp             TCCHHHHHHHHHHHHT--CCGGGEEEEECSHHHHHHHTTCSEE-EEC--TTSCHHHHHHCSEECCCTTTTHHHHHHT
T ss_pred             CCChHHHHHHHHHHcC--CCHHHeEEEcCchhhHHHHHHcCCE-EEe--cCCCHHHHhhCCEEEccCCcchHHHHHH
Confidence            4466889999999999  9999999999999999999999984 333  33333334457777776443  544444

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=97.95  E-value=6.1e-06  Score=60.62  Aligned_cols=46  Identities=11%  Similarity=0.002  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHHHcCCCCCC--CceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          85 KPAPDVFLVAAKRFDEKPQP--SKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~~--~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      ++++..++.++++++  +++  +++++|||+.+|+.+++.+|+. +.+...
T Consensus       175 ~~K~~~l~~l~~~~~--i~~~~~~~~~~GD~~nD~~m~~~ag~~-va~~na  222 (259)
T 3zx4_A          175 ADKGRAVARLRALWP--DPEEARFAVGLGDSLNDLPLFRAVDLA-VYVGRG  222 (259)
T ss_dssp             CCHHHHHHHHHHTCS--SHHHHTSEEEEESSGGGHHHHHTSSEE-EECSSS
T ss_pred             CCHHHHHHHHHHHhC--CCCCCceEEEEeCCHHHHHHHHhCCCe-EEeCCh
Confidence            778999999999999  888  9999999999999999999975 455444

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=97.94  E-value=9.1e-06  Score=60.64  Aligned_cols=62  Identities=19%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      .+...++.+++.++  +++++|++|||+.+|+.+++.+|+ ++.+.++  .......+++++.+..+
T Consensus       216 ~K~~~~~~~~~~~~--~~~~~~~~~GD~~nD~~m~~~ag~-~va~~~~--~~~~~~~a~~v~~~~~~  277 (288)
T 1nrw_A          216 SKGQALKRLAKQLN--IPLEETAAVGDSLNDKSMLEAAGK-GVAMGNA--REDIKSIADAVTLTNDE  277 (288)
T ss_dssp             SHHHHHHHHHHHTT--CCGGGEEEEESSGGGHHHHHHSSE-EEECTTC--CHHHHHHCSEECCCGGG
T ss_pred             ChHHHHHHHHHHhC--CCHHHEEEEcCCHHHHHHHHHcCc-EEEEcCC--CHHHHhhCceeecCCCc
Confidence            34678999999999  999999999999999999999999 6677554  23333456777766544

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=97.93  E-value=3e-05  Score=66.79  Aligned_cols=127  Identities=13%  Similarity=0.034  Sum_probs=77.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-c---eEEecCCCC-----------CccCCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-H---HVVLGSADP-----------EVKQGKPA   87 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d---~v~~~~~~~-----------~~~~~Kp~   87 (166)
                      ..++.|++.++++.|++.|+++.++|+.....+ ..+.+.+|+.... +   .++++....           ......-.
T Consensus       533 ~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA-~aIA~~lGI~~~~~~~~~~~~~g~~~~~~~el~~~~~~~~V~arv~  611 (920)
T 1mhs_A          533 MDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIA-RETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVF  611 (920)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCEEEEEESSCHHHH-HHHHHHHTSSCSCCCSSSSSSCBCCCGGGGGGGTTTTTTSCEESCC
T ss_pred             eccccccHHHHHHHHhhcCceEEEEcCCCHHHH-HHHHHHcCCCccccCccceeecCcccCCHHHHHHHHhhCeEEEEeC
Confidence            357899999999999999999999999997766 4445556885311 0   011100000           00111222


Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhh
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKP  155 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~  155 (166)
                      |+--..+.+.+.  -..+.+.|+||+.||..+-+++++.... ..+  .......+|+++  +++..+..
T Consensus       612 P~~K~~iV~~Lq--~~g~~Vam~GDGvNDapaLk~AdvGIAm-g~g--td~ak~aADiVl~~~~~~~I~~  676 (920)
T 1mhs_A          612 PQHKYNVVEILQ--QRGYLVAMTGDGVNDAPSLKKADTGIAV-EGS--SDAARSAADIVFLAPGLGAIID  676 (920)
T ss_dssp             STHHHHHHHHHH--TTTCCCEECCCCGGGHHHHHHSSEEEEE-TTS--CHHHHHSSSEEESSCCSHHHHH
T ss_pred             HHHHHHHHHHHH--hCCCeEEEEcCCcccHHHHHhCCcCccc-ccc--cHHHHHhcCeEEcCCCHHHHHH
Confidence            334445555555  3457899999999999999999986554 333  222234455544  34544443

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=97.91  E-value=1.2e-06  Score=62.65  Aligned_cols=97  Identities=10%  Similarity=0.069  Sum_probs=73.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-cccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...+||+.+||+.+. +++.++|.|++....+... .+.++.. .+|+..+..+   ++...   ...|.+.++.+|  .
T Consensus        58 v~~RPgl~eFL~~l~-~~yeivI~Tas~~~ya~~v-l~~LDp~~~~f~~rl~R~---~c~~~---~g~y~KdL~~Lg--r  127 (204)
T 3qle_A           58 TAKRPGADYFLGYLS-QYYEIVLFSSNYMMYSDKI-AEKLDPIHAFVSYNLFKE---HCVYK---DGVHIKDLSKLN--R  127 (204)
T ss_dssp             EEECTTHHHHHHHHT-TTEEEEEECSSCHHHHHHH-HHHTSTTCSSEEEEECGG---GSEEE---TTEEECCGGGSC--S
T ss_pred             EEeCCCHHHHHHHHH-hCCEEEEEcCCcHHHHHHH-HHHhCCCCCeEEEEEEec---ceeEE---CCeeeecHHHhC--C
Confidence            467999999999999 5799999999998877544 4556776 4788777665   44331   223677888899  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      ++++|++|+|++.-+....+.|+.....
T Consensus       128 dl~~vIiIDDsp~~~~~~p~N~I~I~~~  155 (204)
T 3qle_A          128 DLSKVIIIDTDPNSYKLQPENAIPMEPW  155 (204)
T ss_dssp             CGGGEEEEESCTTTTTTCGGGEEECCCC
T ss_pred             ChHHEEEEECCHHHHhhCccCceEeeeE
Confidence            9999999999998776666666655444

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=97.90  E-value=1.2e-05  Score=59.97  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      .-++...++.++++++  ++++++++|||+.+|+.+++.+|+ ++.+.++  .......+++++.+..+
T Consensus       196 ~~~K~~~l~~l~~~~~--~~~~~~~~~GD~~nD~~m~~~ag~-~va~~n~--~~~~~~~a~~v~~~~~~  259 (282)
T 1rkq_A          196 RVNKGTGVKSLADVLG--IKPEEIMAIGDQENDIAMIEYAGV-GVAVDNA--IPSVKEVANFVTKSNLE  259 (282)
T ss_dssp             TCSHHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHSSE-EEECTTS--CHHHHHHCSEECCCTTT
T ss_pred             CCCCHHHHHHHHHHhC--CCHHHEEEECCcHHHHHHHHHCCc-EEEecCC--cHHHHhhCCEEecCCCc
Confidence            3456889999999999  999999999999999999999998 4555443  23333457777766433

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=97.78  E-value=2.7e-05  Score=59.41  Aligned_cols=113  Identities=15%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-C----------------ccCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-E----------------VKQGKP   86 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~----------------~~~~Kp   86 (166)
                      ..+.+++.++|+.|++ |++++++|+.....+.. ..+.+++   ++.+.+..... .                ....++
T Consensus       102 ~~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  176 (332)
T 1y8a_A          102 AKFVPDAEKAMATLQE-RWTPVVISTSYTQYLRR-TASMIGV---RGELHGTEVDFDSIAVPEGLREELLSIIDVIASLS  176 (332)
T ss_dssp             CCBCTTHHHHHHHHHT-TCEEEEEEEEEHHHHHH-HHHHTTC---CSEEEEEBCCGGGCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHc-CCcEEEEECCceEEEcc-cchhhhh---hhhhcccccchhhhccccccceeEEecCHHHHhhh
Confidence            4679999999999999 99999999887443432 2333344   23222221000 0                000111


Q ss_pred             C---------------hHHHH------------HHHHHcCCCCCCCc----eEEEecCHhHHHHHHHc----CCeEEEec
Q psy6288          87 A---------------PDVFL------------VAAKRFDEKPQPSK----CLVFEDAPNGVLGAKAA----GMSCVMVP  131 (166)
Q Consensus        87 ~---------------~~~~~------------~~~~~~~~~~~~~~----~i~IGD~~~Di~~a~~~----G~~~i~v~  131 (166)
                      .               +..+.            .+++  +  +++++    |++|||+.+|+.+++.+    |+..+ + 
T Consensus       177 ~~~~l~~~~~~~~~s~~~~~~e~ii~~~g~~K~~al~--g--i~~~~~~~~via~GDs~NDi~ml~~A~~~~g~~va-m-  250 (332)
T 1y8a_A          177 GEELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMR--G--YCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIA-F-  250 (332)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHTCBCCCHHHHHHHHH--H--HHHHHTCSSCEEEECSGGGHHHHHHHHHTTCEEEE-E-
T ss_pred             hHHHHHHHHHHHhhcCCCceeeEEecCCCCCHHHHHh--c--cChhhcCceEEEEeCcHhHHHHHHHHhhcCCeEEE-e-
Confidence            1               11122            1222  5  67888    99999999999999999    99744 4 


Q ss_pred             CCCCCcccccccchhhCC
Q psy6288         132 DPTVPKHRTEAADLVLNS  149 (166)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~  149 (166)
                      ++  .......+++++.+
T Consensus       251 na--~~~lk~~Ad~v~~~  266 (332)
T 1y8a_A          251 NG--NEYALKHADVVIIS  266 (332)
T ss_dssp             SC--CHHHHTTCSEEEEC
T ss_pred             cC--CHHHHhhCcEEecC
Confidence            43  22333456666655

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=97.73  E-value=5.2e-05  Score=66.16  Aligned_cols=103  Identities=14%  Similarity=0.048  Sum_probs=66.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc------------------------cceEEecCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL------------------------FHHVVLGSAD   78 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~------------------------fd~v~~~~~~   78 (166)
                      ..++.|++.++|+.|+++|++++++|+.....+. .+.+.+|+...                        ...++.+..-
T Consensus       602 ~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~-~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  680 (1034)
T 3ixz_A          602 IDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAK-AIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQL  680 (1034)
T ss_pred             cCCCchhHHHHHHHHHHcCCeEEEEeCCCHHHHH-HHHHHcCCCCCCchHHHHHHHhhCccchhccccccceeEEecHhh
Confidence            4679999999999999999999999999977664 44444576321                        0012221100


Q ss_pred             ---------------CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288          79 ---------------PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV  128 (166)
Q Consensus        79 ---------------~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i  128 (166)
                                     .......-.|.--..+.+.++  .....++++||+.||+.+-+.+|+...
T Consensus       681 ~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iv~~lq--~~g~~V~a~GDG~ND~~mLk~A~vGIA  743 (1034)
T 3ixz_A          681 KDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQ--RLGAIVAVTGDGVNDSPALKKADIGVA  743 (1034)
T ss_pred             hhCCHHHHHHHHHhCCceEEEecCHHHHHHHHHHHH--HcCCEEEEECCcHHhHHHHHHCCeeEE
Confidence                           000111122333344444444  344569999999999999999997644

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=97.63  E-value=3.9e-05  Score=57.76  Aligned_cols=62  Identities=21%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC-Ch
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN-SL  150 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~-~~  150 (166)
                      .-++...++.+++.++  ++++++++|||+.+|+.+++.+|+. +.+.++  .......+++++. +.
T Consensus       222 ~~~K~~~l~~l~~~~~--~~~~~~~~~GD~~nD~~m~~~ag~~-va~~na--~~~~k~~a~~v~~~~~  284 (301)
T 2b30_A          222 GHDKYTGINYLLKHYN--ISNDQVLVVGDAENDIAMLSNFKYS-FAVANA--TDSAKSHAKCVLPVSH  284 (301)
T ss_dssp             TCCHHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHSCSEE-EECTTC--CHHHHHHSSEECSSCT
T ss_pred             CCCcHHHHHHHHHHcC--CCHHHEEEECCCHHHHHHHHHcCCe-EEEcCC--cHHHHhhCCEEEccCC
Confidence            3456889999999999  9999999999999999999999985 555544  2333345677776 53

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=97.61  E-value=5.5e-05  Score=64.97  Aligned_cols=128  Identities=15%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc-c-ceEEecC-CCC-----C--------ccCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL-F-HHVVLGS-ADP-----E--------VKQGKP   86 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~-f-d~v~~~~-~~~-----~--------~~~~Kp   86 (166)
                      ..++.|++.+.++.|++.|+++.++|+.....+ ..+.+.+|+..- + ..++.+. -+.     .        .....-
T Consensus       486 ~Dp~R~~a~~aI~~l~~aGI~v~MiTGD~~~tA-~~iA~~lGi~~~~~~~~~l~g~~~~~~~~~~~l~~~~~~~~v~arv  564 (885)
T 3b8c_A          486 FDPPRHDSAETIRRALNLGVNVKMITGDQLAIG-KETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGV  564 (885)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCEEEESSCHHHH-THHHHTTTCTTCCSTTSSCCBGGGGTTSCCSCHHHHHHTSCCEECC
T ss_pred             ecccchhHHHHHHHHHHcCCcEEEEcCCChHHH-HHHHHHhCCccccCCcceeeccccccccchhHHHHHHhhCcEEEEE
Confidence            357899999999999999999999999997766 445555687421 1 1111111 000     0        011223


Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPE  156 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~  156 (166)
                      .|+--..+.+.+.  -..+.+.|+||+.||..+-+++++.... ..+  .......+|+++  +++..+...
T Consensus       565 ~P~~K~~iV~~lq--~~g~~Vam~GDGvNDapaLk~AdvGIAm-g~g--td~ak~aADivl~~~~~~~I~~a  631 (885)
T 3b8c_A          565 FPEHKYEIVKKLQ--ERKHIVGMTGDGVNDAPALKKADIGIAV-ADA--TDAARGASDIVLTEPGLSVIISA  631 (885)
T ss_dssp             CHHHHHHHHHHHH--HTTCCCCBCCCSSTTHHHHHHSSSCCCC-SSS--HHHHGGGCSSCCSSCSHHHHTHH
T ss_pred             CHHHHHHHHHHHH--HCCCeEEEEcCCchhHHHHHhCCEeEEe-CCc--cHHHHHhcceeeccCchhHHHHH
Confidence            3444455555555  3456899999999999999999876443 222  122334456554  335555443

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=97.53  E-value=5e-05  Score=55.37  Aligned_cols=64  Identities=14%  Similarity=0.108  Sum_probs=48.1

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccccc-------ccchhhCChhh
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE-------AADLVLNSLEE  152 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~-------~~~~~~~~~~~  152 (166)
                      .-++...++.+++.++  ++++++++|||+.+|+.+++.+|+. +.+.++  ......       .+++++.+..+
T Consensus       160 ~~~K~~~l~~l~~~~~--~~~~~~~~~GD~~nD~~m~~~~g~~-va~~na--~~~~k~~a~~~~~~a~~v~~~~~~  230 (244)
T 1s2o_A          160 RSNKGNATQYLQQHLA--MEPSQTLVCGDSGNDIGLFETSARG-VIVRNA--QPELLHWYDQWGDSRHYRAQSSHA  230 (244)
T ss_dssp             TCSHHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHTSSSEE-EECTTC--CHHHHHHHHHHCCTTEEECSSCHH
T ss_pred             CCChHHHHHHHHHHhC--CCHHHEEEECCchhhHHHHhccCcE-EEEcCC--cHHHHHHHhcccccceeecCCcch
Confidence            4466899999999999  9999999999999999999988874 555433  333222       25677665543

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=97.45  E-value=6.8e-05  Score=54.80  Aligned_cols=64  Identities=6%  Similarity=-0.058  Sum_probs=49.2

Q ss_pred             CCChHHHHHHHHHcCCCC-CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          85 KPAPDVFLVAAKRFDEKP-QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~-~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      -.+...++.+++.++  + +++++++|||+.+|+.+.+.+|.. +.+.++.. .+....+++++++..+
T Consensus       178 ~sKg~al~~l~~~~~--~~~~~~viafGD~~NDi~Ml~~ag~~-va~gna~~-~~~~~~a~~v~~~~~~  242 (249)
T 2zos_A          178 SDKGKAAKILLDFYK--RLGQIESYAVGDSYNDFPMFEVVDKV-FIVGSLKH-KKAQNVSSIIDVLEVI  242 (249)
T ss_dssp             CCHHHHHHHHHHHHH--TTSCEEEEEEECSGGGHHHHTTSSEE-EEESSCCC-TTEEEESSHHHHHHHH
T ss_pred             CChHHHHHHHHHHhc--cCCCceEEEECCCcccHHHHHhCCcE-EEeCCCCc-cccchhceEEeccccc
Confidence            345889999999999  8 899999999999999999999985 55655431 2233457777776654

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=97.43  E-value=0.00052  Score=52.95  Aligned_cols=99  Identities=19%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             HHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCch---hhHHHHHhhhcCcccccceEEecCCCCCccCCCCCh
Q psy6288          13 VIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAK---ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP   88 (166)
Q Consensus        13 ~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~   88 (166)
                      ++.|+++.+. ...+.||+.++|+.|++.|++++++||++.   .....++.+.+|+.-..+.|+++.   ....     
T Consensus        16 ~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~~~i~ts~---~~~~-----   87 (352)
T 3kc2_A           16 FAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSPLQIIQSH---TPYK-----   87 (352)
T ss_dssp             EEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCCGGGEECTT---GGGG-----
T ss_pred             EEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCChhhEeehH---HHHH-----
Confidence            4567777555 467899999999999999999999999862   334455554578876677888776   2111     


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288          89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV  130 (166)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v  130 (166)
                      .        +-  .....+++||-. .-...+++.|+..+..
T Consensus        88 ~--------~~--~~~~~v~viG~~-~l~~~l~~~G~~~v~~  118 (352)
T 3kc2_A           88 S--------LV--NKYSRILAVGTP-SVRGVAEGYGFQDVVH  118 (352)
T ss_dssp             G--------GT--TTCSEEEEESST-THHHHHHHHTCSEEEE
T ss_pred             H--------HH--hcCCEEEEECCH-HHHHHHHhCCCeEecc
Confidence            0        11  123678888865 5577888999988853

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=97.34  E-value=0.00013  Score=56.79  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=60.3

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccc-eEEecCCCCCccCCCCChHHHHHHHHHc-C
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFH-HVVLGSADPEVKQGKPAPDVFLVAAKRF-D   99 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~~-~   99 (166)
                      ...++||+.+||+.+. .+|.++|.|++...-+. .+.+.++... +|+ .+++.+   +++.      .|.+.++++ +
T Consensus        73 ~v~~RPg~~eFL~~l~-~~yeivI~Tas~~~yA~-~vl~~LDp~~~~f~~ri~sr~---~~g~------~~~KdL~~L~~  141 (372)
T 3ef0_A           73 YIKFRPGLAQFLQKIS-ELYELHIYTMGTKAYAK-EVAKIIDPTGKLFQDRVLSRD---DSGS------LAQKSLRRLFP  141 (372)
T ss_dssp             EEEECTTHHHHHHHHH-TTEEEEEECSSCHHHHH-HHHHHHCTTSCSSSSCEECTT---TSSC------SSCCCGGGTCS
T ss_pred             EEEECcCHHHHHHHHh-cCcEEEEEeCCcHHHHH-HHHHHhccCCceeeeEEEEec---CCCC------cceecHHHhcC
Confidence            3567999999999999 57999999999988764 4556678776 787 465555   3321      234456665 8


Q ss_pred             CCCCCCceEEEecCHh
Q psy6288         100 EKPQPSKCLVFEDAPN  115 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~  115 (166)
                        .++++|++|+|++.
T Consensus       142 --~dl~~viiiDd~~~  155 (372)
T 3ef0_A          142 --CDTSMVVVIDDRGD  155 (372)
T ss_dssp             --SCCTTEEEEESCSG
T ss_pred             --CCCceEEEEeCCHH
Confidence              89999999999984

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=96.92  E-value=0.00072  Score=50.00  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCC---chhhHHHHHhhhcCcc-cccceEEecCCCC
Q psy6288           5 QVLNYVTHVIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSS---AKESFELKTSRHKDTL-KLFHHVVLGSADP   79 (166)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~---~~~~~~~~l~~~~gl~-~~fd~v~~~~~~~   79 (166)
                      +++..++.+..|+++.+. ...+.|++.++|++|++.|++++++||+   ........+ +.+|+. ..++.++++.   
T Consensus         9 ~~~~~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l-~~lg~~~~~~~~ii~~~---   84 (284)
T 2hx1_A            9 SLLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSY-HKLGLFSITADKIISSG---   84 (284)
T ss_dssp             HHGGGCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHH-HHTTCTTCCGGGEEEHH---
T ss_pred             HHHhcCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHH-HHCCcCCCCHhhEEcHH---
Confidence            344445556778888655 3567899999999999999999999984   444444454 446887 6677777765   


Q ss_pred             CccCCCCChHHHHHHHHHcCCCCCCCceE-EEecCHhHHHHHHHcCCeE
Q psy6288          80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCL-VFEDAPNGVLGAKAAGMSC  127 (166)
Q Consensus        80 ~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i-~IGD~~~Di~~a~~~G~~~  127 (166)
                              ....+.+.+++.    . ++. ++|.. ......++.|+..
T Consensus        85 --------~~~~~~l~~~~~----~-~v~~~lg~~-~l~~~l~~~G~~~  119 (284)
T 2hx1_A           85 --------MITKEYIDLKVD----G-GIVAYLGTA-NSANYLVSDGIKM  119 (284)
T ss_dssp             --------HHHHHHHHHHCC----S-EEEEEESCH-HHHHTTCBTTEEE
T ss_pred             --------HHHHHHHHhhcC----C-cEEEEecCH-HHHHHHHHCCCee
Confidence                    122222333333    3 777 78875 4455566667653

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=96.79  E-value=0.0044  Score=45.25  Aligned_cols=96  Identities=24%  Similarity=0.277  Sum_probs=62.4

Q ss_pred             hhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhhH---HHHHhhhcCcccccceEEecCCCCCccCCCCChHH
Q psy6288          15 FDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKESF---ELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV   90 (166)
Q Consensus        15 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~---~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~   90 (166)
                      .|+++.+. ...+.|++.++|++|++.|++++++||++....   ...+. .+|+....+.++++.           .. 
T Consensus         6 ~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~-~lg~~~~~~~i~~~~-----------~~-   72 (263)
T 1zjj_A            6 FDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLL-KMGIDVSSSIIITSG-----------LA-   72 (263)
T ss_dssp             EECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHH-TTTCCCCGGGEEEHH-----------HH-
T ss_pred             EeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH-HCCCCCChhhEEecH-----------HH-
Confidence            45566444 344669999999999999999999999875333   23333 357765556677665           22 


Q ss_pred             HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE
Q psy6288          91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC  127 (166)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~  127 (166)
                      ....+++..   ...++.++|.. .....+++.|+..
T Consensus        73 ~~~~l~~~~---~~~~v~viG~~-~l~~~l~~~G~~~  105 (263)
T 1zjj_A           73 TRLYMSKHL---DPGKIFVIGGE-GLVKEMQALGWGI  105 (263)
T ss_dssp             HHHHHHHHS---CCCCEEEESCH-HHHHHHHHHTSCB
T ss_pred             HHHHHHHhC---CCCEEEEEcCH-HHHHHHHHcCCee
Confidence            233334433   24678888874 5566777777743

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=96.74  E-value=0.017  Score=43.99  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR   61 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~   61 (166)
                      ..++|++.++++.|+++|++++|+|++....++ .+..
T Consensus       142 ~~~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~-~~a~  178 (327)
T 4as2_A          142 PRVFSGQRELYNKLMENGIEVYVISAAHEELVR-MVAA  178 (327)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEEEEEHHHHH-HHHT
T ss_pred             cccCHHHHHHHHHHHHCCCEEEEEeCCcHHHHH-HHHh
Confidence            468999999999999999999999999977664 4444

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=96.34  E-value=0.0018  Score=47.80  Aligned_cols=49  Identities=12%  Similarity=0.097  Sum_probs=39.9

Q ss_pred             CCCChHHHHHHHHHcCCCCCCCc--eEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          84 GKPAPDVFLVAAKRFDEKPQPSK--CLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        84 ~Kp~~~~~~~~~~~~~~~~~~~~--~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      .-++...++.+++.++. +++++  +++|||+.+|+.+.+.+|.. +.+.++.
T Consensus       187 ~~~K~~~l~~l~~~~~~-~~~~~~~~~~~GD~~nD~~m~~~ag~~-va~~n~~  237 (275)
T 1xvi_A          187 SAGKDQAANWIIATYQQ-LSGKRPTTLGLGDGPNDAPLLEVMDYA-VIVKGLN  237 (275)
T ss_dssp             TCCHHHHHHHHHHHHHH-HHSSCCEEEEEESSGGGHHHHHTSSEE-EECCCCC
T ss_pred             CCCHHHHHHHHHHHhhh-cccccCcEEEECCChhhHHHHHhCCce-EEecCCC
Confidence            34568899999998871 25777  99999999999999999984 7777764

>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A

Probab=96.26  E-value=0.085  Score=38.54  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             HHHHHHH-CCCCEEEEeCCchhh-HHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288          33 LINHLHK-HNIPFAIATSSAKES-FELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL  108 (166)
Q Consensus        33 ~l~~l~~-~g~~i~ivS~~~~~~-~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i  108 (166)
                      +|..... .+..-++||++..-. +.+.++  +|+..+|.  .|.++-   .+  +  +..-|+++.+++|   ....-+
T Consensus       167 ~L~~i~sr~~~vNVLVTs~qLVPaLaK~LL--ygL~~~fpieNIYSa~---ki--G--KesCFerI~~RFG---~k~~yv  234 (274)
T 3geb_A          167 ALNLINSRPNCVNVLVTTTQLIPALAKVLL--YGLGSVFPIENIYSAT---KT--G--KESCFERIMQRFG---RKAVYV  234 (274)
T ss_dssp             HHHHHHHSTTEEEEEEESSCHHHHHHHHHH--TTCTTTSCGGGEEETT---TT--C--HHHHHHHHHHHHC---TTSEEE
T ss_pred             HHHhhccCCceeEEEEecCchHHHHHHHHH--hhcccceecccccchh---hc--C--HHHHHHHHHHHhC---CCceEE
Confidence            3444433 344556677665443 333333  58887774  677765   32  3  4899999999999   457788


Q ss_pred             EEecCHhHHHHHHHcCCeEEEecC
Q psy6288         109 VFEDAPNGVLGAKAAGMSCVMVPD  132 (166)
Q Consensus       109 ~IGD~~~Di~~a~~~G~~~i~v~~  132 (166)
                      +|||+...=++|+..+++..-|..
T Consensus       235 vIGDG~eEe~AAk~~n~PFwrI~~  258 (274)
T 3geb_A          235 VIGDGVEEEQGAKKHNMPFWRISC  258 (274)
T ss_dssp             EEESSHHHHHHHHHTTCCEEECCS
T ss_pred             EECCCHHHHHHHHHcCCCeEEeec
Confidence            899999999999999999988854

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=96.10  E-value=0.00073  Score=51.47  Aligned_cols=98  Identities=10%  Similarity=0.003  Sum_probs=63.1

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCcc----CCCCChHHHHHHHHHc
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVK----QGKPAPDVFLVAAKRF   98 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~----~~Kp~~~~~~~~~~~~   98 (166)
                      ..+||+.+||+++.+ +|.++|.|.+....+...+ +.++....+  ...+..+   .+.    ..+.....|.+-++++
T Consensus       164 ~~RP~l~eFL~~l~~-~yeivIfTas~~~ya~~vl-d~Ld~~~~~~~~~~~~r~---~~~~~~~~~~~~g~~~vKdLs~L  238 (320)
T 3shq_A          164 LMRPYLHEFLTSAYE-DYDIVIWSATSMRWIEEKM-RLLGVASNDNYKVMFYLD---STAMISVHVPERGVVDVKPLGVI  238 (320)
T ss_dssp             HBCTTHHHHHHHHHH-HEEEEEECSSCHHHHHHHH-HHTTCTTCSSCCCCEEEC---GGGCEEEEETTTEEEEECCHHHH
T ss_pred             EeCCCHHHHHHHHHh-CCEEEEEcCCcHHHHHHHH-HHhCCCCCcceeEEEEEc---CCccccccccCCCCEEEEEhHHh
Confidence            468999999999996 5999999999987775444 545655443  2111111   111    0111122244445555


Q ss_pred             -----CCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288          99 -----DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM  129 (166)
Q Consensus        99 -----~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~  129 (166)
                           |  .+.+++++|.|++.-.......|+....
T Consensus       239 w~~~p~--rdl~~tIiIDdsp~~~~~~p~NgI~I~~  272 (320)
T 3shq_A          239 WALYKQ--YNSSNTIMFDDIRRNFLMNPKSGLKIRP  272 (320)
T ss_dssp             HHHCTT--CCGGGEEEEESCGGGGTTSGGGEEECCC
T ss_pred             hcccCC--CChhHEEEEeCChHHhccCcCceEEeCe
Confidence                 7  8999999999999877666666655443

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=95.86  E-value=0.0047  Score=48.90  Aligned_cols=79  Identities=16%  Similarity=0.241  Sum_probs=57.4

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccce-EEecCCCCCccCCCCChHHHHHHHHH-cCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHH-VVLGSADPEVKQGKPAPDVFLVAAKR-FDE  100 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~-v~~~~~~~~~~~~Kp~~~~~~~~~~~-~~~  100 (166)
                      ...+||+.+||+++.+ +|.++|.|.+...-+. .+.+.++... +|.. +++-+   +++.      .+.+-+++ ++ 
T Consensus        82 V~~RPgl~eFL~~ls~-~yEivIfTas~~~YA~-~Vl~~LDp~~~~f~~Rl~sRd---~cg~------~~~KdL~~ll~-  149 (442)
T 3ef1_A           82 IKFRPGLAQFLQKISE-LYELHIYTMGTKAYAK-EVAKIIDPTGKLFQDRVLSRD---DSGS------LAQKSLRRLFP-  149 (442)
T ss_dssp             EEECTTHHHHHHHHTT-TEEEEEECSSCHHHHH-HHHHHHCTTSTTTTTCEECTT---TSSC------SSCCCGGGTCS-
T ss_pred             EEeCCCHHHHHHHHhC-CcEEEEEcCCCHHHHH-HHHHHhccCCccccceEEEec---CCCC------ceeeehHHhcC-
Confidence            5679999999999995 6999999999977664 4556567665 6776 55444   4331      12233454 37 


Q ss_pred             CCCCCceEEEecCHh
Q psy6288         101 KPQPSKCLVFEDAPN  115 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~  115 (166)
                       .+.+++++|.|++.
T Consensus       150 -rdl~~vvIIDd~p~  163 (442)
T 3ef1_A          150 -CDTSMVVVIDDRGD  163 (442)
T ss_dssp             -SCCTTEEEEESCSG
T ss_pred             -CCcceEEEEECCHH
Confidence             89999999999984

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=95.85  E-value=0.0053  Score=44.91  Aligned_cols=57  Identities=7%  Similarity=-0.065  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEec----CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFED----APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL  150 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD----~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~  150 (166)
                      +...++.+   ++  +++++++.|||    +.+|+.+.+.+|...+.+...  .......+++++.+.
T Consensus       198 Kg~al~~l---~g--i~~~~viafGDs~~~~~NDi~Ml~~~~~~g~av~NA--~~~~k~~a~~v~~~~  258 (262)
T 2fue_A          198 KRYCLDSL---DQ--DSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSP--QDTVQRCREIFFPET  258 (262)
T ss_dssp             TTHHHHHH---TT--SCCSEEEEEESCCSTTSTTHHHHHSTTSEEEECSSH--HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHH---HC--CCHHHEEEECCCCCCCCCCHHHHhcCccCcEEecCC--CHHHHHhhheeCCCC
Confidence            46677777   88  89999999999    999999999999877888322  223445556665543

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=95.34  E-value=0.23  Score=35.83  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             HhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCC---chhhHHHHHhhhcCcccccceEEec
Q psy6288          14 IFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSS---AKESFELKTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        14 ~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~---~~~~~~~~l~~~~gl~~~fd~v~~~   75 (166)
                      ..|+++.+.. ..+.|++.++|++|+++|++++++||+   +...+...+.+ +|+....+.++++
T Consensus        10 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~-lg~~~~~~~ii~~   74 (266)
T 3pdw_A           10 LIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVS-FDIPATEEQVFTT   74 (266)
T ss_dssp             EEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHH-TTCCCCGGGEEEH
T ss_pred             EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCCHHHccCH
Confidence            3455664433 346789999999999999999999994   33444444433 5776544555543

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=94.74  E-value=0.018  Score=42.99  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=44.4

Q ss_pred             HHHHHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCC---chhhHHHHHhhhcCcc-cccceEEec
Q psy6288          10 VTHVIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSS---AKESFELKTSRHKDTL-KLFHHVVLG   75 (166)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~---~~~~~~~~l~~~~gl~-~~fd~v~~~   75 (166)
                      ++.+..|+++.+. ...+.|++.++|+.|++.|++++++||+   +.......+. .+|+. ...+.++++
T Consensus        21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~-~~g~~~~~~~~i~~~   90 (306)
T 2oyc_A           21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFA-RLGFGGLRAEQLFSS   90 (306)
T ss_dssp             CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHH-HTTCCSCCGGGEEEH
T ss_pred             CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH-hcCCCcCChhhEEcH
Confidence            3346677787554 4568899999999999999999999974   3344444443 35765 334455543

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=94.71  E-value=0.054  Score=36.15  Aligned_cols=37  Identities=14%  Similarity=0.164  Sum_probs=29.4

Q ss_pred             hhhhhhhcCC------ccchhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288          15 FDMDGLLLGY------NLAIGALRLINHLHKHNIPFAIATSSA   51 (166)
Q Consensus        15 ~~~~~~~~~~------~~~~g~~~~l~~l~~~g~~i~ivS~~~   51 (166)
                      .|+++.+...      .+.|++.++|+.|+++|+.++++|+.+
T Consensus         8 ~DlDGTL~~~~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~   50 (142)
T 2obb_A            8 VDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVRE   50 (142)
T ss_dssp             ECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCC
T ss_pred             EECcCCCCCCCCccccccCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3556644431      356899999999999999999999987

>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}

Probab=93.71  E-value=0.28  Score=34.42  Aligned_cols=90  Identities=7%  Similarity=-0.016  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce
Q psy6288          28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC  107 (166)
Q Consensus        28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  107 (166)
                      -++..+|..+++.+-++++++-.....-...+.+.+|+.-.+ ..+...            +-.+..++++.   ...--
T Consensus        81 ~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~-~~~~~~------------~e~~~~i~~l~---~~G~~  144 (196)
T 2q5c_A           81 FDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKE-FLFSSE------------DEITTLISKVK---TENIK  144 (196)
T ss_dssp             HHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEE-EEECSG------------GGHHHHHHHHH---HTTCC
T ss_pred             hHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEE-EEeCCH------------HHHHHHHHHHH---HCCCe
Confidence            345566666677777999999665443334555555553221 111111            11233444443   12234


Q ss_pred             EEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         108 LVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       108 i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ++|||+.. ...|++.|++++++..|.
T Consensus       145 vvVG~~~~-~~~A~~~Gl~~vli~sg~  170 (196)
T 2q5c_A          145 IVVSGKTV-TDEAIKQGLYGETINSGE  170 (196)
T ss_dssp             EEEECHHH-HHHHHHTTCEEEECCCCH
T ss_pred             EEECCHHH-HHHHHHcCCcEEEEecCH
Confidence            58999887 889999999999998764

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=93.36  E-value=0.17  Score=37.15  Aligned_cols=61  Identities=13%  Similarity=0.068  Sum_probs=42.6

Q ss_pred             HhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec
Q psy6288          14 IFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        14 ~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~   75 (166)
                      ..|+++.+..  ..+-+...++|++|+++|++++++|+.+...+...+ +.+++..+.+.++++
T Consensus         9 ~~DlDGTLl~~~~~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~-~~l~l~~~~~~~I~~   71 (282)
T 1rkq_A            9 AIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYL-KELHMEQPGDYCITY   71 (282)
T ss_dssp             EECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHHH-HHTTCCSTTCEEEEG
T ss_pred             EEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCCeEEEe
Confidence            3456665542  456788999999999999999999999987775554 445765432334443

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=93.21  E-value=0.17  Score=36.63  Aligned_cols=44  Identities=18%  Similarity=0.086  Sum_probs=34.4

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHH
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELK   58 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~   58 (166)
                      .|+++.+..  ..+-+...++|++|+++|++++++|+.+...+...
T Consensus         9 ~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~iaTGR~~~~~~~~   54 (246)
T 3f9r_A            9 FDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQ   54 (246)
T ss_dssp             ECSBTTTBSTTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHH
T ss_pred             EeCcCCcCCCCCccCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
Confidence            456665542  35778999999999999999999999997755433

>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1

Probab=92.77  E-value=0.44  Score=34.24  Aligned_cols=86  Identities=9%  Similarity=-0.008  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288          29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL  108 (166)
Q Consensus        29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i  108 (166)
                      ++..+|..+++.+-++++++-.....-...+.+.+|+.-  .......           ++-.+..++++.   ...--+
T Consensus        94 Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i--~~~~~~~-----------~ee~~~~i~~l~---~~G~~v  157 (225)
T 2pju_A           94 DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL--DQRSYIT-----------EEDARGQINELK---ANGTEA  157 (225)
T ss_dssp             HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCE--EEEEESS-----------HHHHHHHHHHHH---HTTCCE
T ss_pred             HHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCce--EEEEeCC-----------HHHHHHHHHHHH---HCCCCE
Confidence            334445555555678999997654433345555555532  1111111           333445555553   223446


Q ss_pred             EEecCHhHHHHHHHcCCeEEEec
Q psy6288         109 VFEDAPNGVLGAKAAGMSCVMVP  131 (166)
Q Consensus       109 ~IGD~~~Di~~a~~~G~~~i~v~  131 (166)
                      +|||+.. ...|++.|++++++.
T Consensus       158 VVG~~~~-~~~A~~~Gl~~vlI~  179 (225)
T 2pju_A          158 VVGAGLI-TDLAEEAGMTGIFIY  179 (225)
T ss_dssp             EEESHHH-HHHHHHTTSEEEESS
T ss_pred             EECCHHH-HHHHHHcCCcEEEEC
Confidence            8999887 889999999999997

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=92.52  E-value=0.16  Score=32.79  Aligned_cols=29  Identities=10%  Similarity=0.197  Sum_probs=25.9

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKE   53 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~   53 (166)
                      .+.+++.++|++|++.|++++++|+.+..
T Consensus        24 ~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~   52 (126)
T 1xpj_A           24 LPRLDVIEQLREYHQLGFEIVISTARNMR   52 (126)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECTTTT
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCChh
Confidence            36689999999999999999999999754

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=92.16  E-value=0.22  Score=36.40  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             HhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          14 IFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        14 ~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      ..|+++.+..  ..+.+...++|++|+++|++++++|+.+...+...+ +.+++..
T Consensus        13 ~~DlDGTLl~~~~~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   67 (275)
T 1xvi_A           13 FSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQ-KTLGLQG   67 (275)
T ss_dssp             EEECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHH-HHTTCTT
T ss_pred             EEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCC
Confidence            3466775543  345577899999999999999999999988775554 4456643

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=92.05  E-value=0.25  Score=35.62  Aligned_cols=61  Identities=25%  Similarity=0.317  Sum_probs=40.5

Q ss_pred             HHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCC---chhhHHHHHhhhcCcccccceEEe
Q psy6288          13 VIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSS---AKESFELKTSRHKDTLKLFHHVVL   74 (166)
Q Consensus        13 ~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~---~~~~~~~~l~~~~gl~~~fd~v~~   74 (166)
                      +..|+++.+. ...+.|++.++|++|++.|++++++||+   +...+...+. .+|+...-+.+++
T Consensus        20 v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~-~lg~~~~~~~ii~   84 (271)
T 1vjr_A           20 FILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLR-NMGVDVPDDAVVT   84 (271)
T ss_dssp             EEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHH-HTTCCCCGGGEEE
T ss_pred             EEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH-HcCCCCChhhEEc
Confidence            4456667544 4567899999999999999999999965   4444444443 3566433233444

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=91.42  E-value=0.42  Score=34.60  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=39.4

Q ss_pred             HHhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec
Q psy6288          13 VIFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        13 ~~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~   75 (166)
                      +..|+++.+..  ..+.+...++|++|+++|++++++|+.+...+...+ +.+|+....+.+++.
T Consensus         8 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~~~~~i~~   71 (279)
T 3mpo_A            8 IAIDIDGTLLNEKNELAQATIDAVQAAKAQGIKVVLCTGRPLTGVQPYL-DAMDIDGDDQYAITF   71 (279)
T ss_dssp             EEECC-----------CHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCCSSSCEEEEG
T ss_pred             EEEcCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCCCEEEEc
Confidence            34566775543  457788999999999999999999999988775544 445775433444444

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=90.96  E-value=0.27  Score=35.16  Aligned_cols=26  Identities=12%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             eEEEecCHhHHHHHHHc--CCeEEEecCC
Q psy6288         107 CLVFEDAPNGVLGAKAA--GMSCVMVPDP  133 (166)
Q Consensus       107 ~i~IGD~~~Di~~a~~~--G~~~i~v~~~  133 (166)
                      ++.|||+.+|+.+-+.+  |.. +.+...
T Consensus       174 via~GD~~ND~~Ml~~a~~g~~-vam~Na  201 (239)
T 1u02_A          174 AIIAGDDATDEAAFEANDDALT-IKVGEG  201 (239)
T ss_dssp             EEEEESSHHHHHHHHTTTTSEE-EEESSS
T ss_pred             eEEEeCCCccHHHHHHhhCCcE-EEECCC
Confidence            99999999999999998  764 455444

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=90.91  E-value=0.6  Score=33.77  Aligned_cols=53  Identities=11%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             HHhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          13 VIFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        13 ~~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      +..|+++.+..  ..+.+...++|++++++|++++++|+.+...+...+ +.+++.
T Consensus         8 i~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~   62 (279)
T 4dw8_A            8 IVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLA-NELRMN   62 (279)
T ss_dssp             EEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTGG
T ss_pred             EEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHhCCC
Confidence            34566775543  457899999999999999999999999988775554 445774

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=90.71  E-value=0.34  Score=36.00  Aligned_cols=47  Identities=17%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             HHhhhhhhhcC---CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH
Q psy6288          13 VIFDMDGLLLG---YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT   59 (166)
Q Consensus        13 ~~~~~~~~~~~---~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l   59 (166)
                      +..|+++.+..   ..+-+...++|++|+++|++++++|+.+...+...+
T Consensus        30 i~~DlDGTLl~~~~~~is~~~~~al~~l~~~Gi~v~iaTGR~~~~~~~~~   79 (301)
T 2b30_A           30 LLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAF   79 (301)
T ss_dssp             EEEETBTTTBCCTTTCSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHH
T ss_pred             EEEECCCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHh
Confidence            34567775553   346788999999999999999999999987765444

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=90.63  E-value=0.53  Score=33.32  Aligned_cols=52  Identities=21%  Similarity=0.182  Sum_probs=39.0

Q ss_pred             HhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          14 IFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        14 ~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      ..|+++.+..  ..+.+...++|++|+++|++++++|+.+...+...+ +.+|+.
T Consensus         7 ~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~-~~l~~~   60 (231)
T 1wr8_A            7 SIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAAS-ILIGTS   60 (231)
T ss_dssp             EEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHH-HHHTCC
T ss_pred             EEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHH-HHcCCC
Confidence            4567775543  456789999999999999999999999877665444 434654

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=90.42  E-value=0.12  Score=37.09  Aligned_cols=41  Identities=12%  Similarity=-0.059  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEec----CHhHHHHHHHcCCeEEEecCC
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFED----APNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD----~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      ...++.+   ++  +++++++.|||    +.+|+.+.+.+|...+.+...
T Consensus       190 g~al~~l---~~--i~~~~viafGD~~~~~~ND~~Ml~~a~~ag~av~Na  234 (246)
T 2amy_A          190 RYCLRHV---EN--DGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAP  234 (246)
T ss_dssp             GGGGGGT---TT--SCCSEEEEEECSCC---CCCHHHHCTTEEEEECSSH
T ss_pred             HHHHHHH---hC--CCHHHEEEECCCCCCCCCcHHHHHhCCcceEEeeCC
Confidence            4455555   77  89999999999    999999999999877777543

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=89.86  E-value=0.36  Score=34.69  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             hhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          16 DMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        16 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      |+++.+......+...++|++|+++|++++++|+.+...+...+ +.+++.
T Consensus         8 DlDGTLl~~~~~~~~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~-~~~~~~   57 (249)
T 2zos_A            8 DIDKTLIPGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYR-KELEVE   57 (249)
T ss_dssp             CCSTTTCTTSCSGGGHHHHHHHHHTTEEEEEBCSSCHHHHHHHH-HHHTCC
T ss_pred             eCCCCccCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCC
Confidence            45554332122245899999999999999999999987765544 335664

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=88.40  E-value=0.59  Score=34.13  Aligned_cols=54  Identities=24%  Similarity=0.166  Sum_probs=40.5

Q ss_pred             HHhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          13 VIFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        13 ~~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      +..|+++.+..  ..+-+...++|++|+++|++++++|+.+...+...+ +.+|+..
T Consensus        24 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~-~~l~~~~   79 (285)
T 3pgv_A           24 VASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIR-DNLGIRS   79 (285)
T ss_dssp             EEEECCCCCSCTTSCCCHHHHHHHHHHHTTTCEEEEECSSCGGGGHHHH-HHHCSCC
T ss_pred             EEEeCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HhcCCCc
Confidence            34566665543  457788999999999999999999999988775444 4457653

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=87.79  E-value=2.5  Score=30.45  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHH----HcCCCCCCCc
Q psy6288          31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK----RFDEKPQPSK  106 (166)
Q Consensus        31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~----~~~~~~~~~~  106 (166)
                      .++++++++.+.+++++|+...........+. |-.+|+              .||.+..+..+..    .+.  ...-+
T Consensus        64 ~~~~~~lr~~~~pvi~lt~~~~~~~~~~a~~~-Ga~dyl--------------~Kp~~~~~~~~~~~~~~~~~--~~~~~  126 (259)
T 3luf_A           64 GEAVKVLLERGLPVVILTADISEDKREAWLEA-GVLDYV--------------MKDSRHSLQYAVGLVHRLYL--NQQIE  126 (259)
T ss_dssp             SHHHHHHHHTTCCEEEEECC-CHHHHHHHHHT-TCCEEE--------------ECSSHHHHHHHHHHHHHHHH--HTTCE
T ss_pred             HHHHHHHHhCCCCEEEEEccCCHHHHHHHHHC-CCcEEE--------------eCCchhHHHHHHHhhhhHhh--cCCCc
Confidence            46888898889999999998765544444443 665544              3555443332222    222  24678


Q ss_pred             eEEEecCHhHHHHHH----HcCCeEEEecCC
Q psy6288         107 CLVFEDAPNGVLGAK----AAGMSCVMVPDP  133 (166)
Q Consensus       107 ~i~IGD~~~Di~~a~----~~G~~~i~v~~~  133 (166)
                      +++|+|.........    ..|+....+..+
T Consensus       127 ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~  157 (259)
T 3luf_A          127 VLVVDDSRTSRHRTMAQLRKQLLQVHEASHA  157 (259)
T ss_dssp             EEEECSCHHHHHHHHHHHHTTTCEEEEESSH
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCcEEEEeCCH
Confidence            999999875444332    346666555544

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=87.68  E-value=0.86  Score=33.22  Aligned_cols=53  Identities=17%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             HHhhhhhhhcC--C-ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          13 VIFDMDGLLLG--Y-NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        13 ~~~~~~~~~~~--~-~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      +..|+++.+-.  . .+-+...++|++|+++|++++++|+.+...+...+ +.+++.
T Consensus        24 i~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~-~~l~~~   79 (283)
T 3dao_A           24 IATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLF-APIKHK   79 (283)
T ss_dssp             EEECCBTTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHT-GGGGGG
T ss_pred             EEEeCcCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCC
Confidence            34567776553  3 57799999999999999999999999987765444 334543

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=86.44  E-value=1.1  Score=32.81  Aligned_cols=53  Identities=15%  Similarity=0.190  Sum_probs=39.5

Q ss_pred             HhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          14 IFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        14 ~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      ..|+++.+..  ..+.+...++|++|++.|++++++|+.+...+...+ +.+++..
T Consensus         8 ~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   62 (288)
T 1nrw_A            8 AIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIF-EPLGIKT   62 (288)
T ss_dssp             EEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-GGGTCCC
T ss_pred             EEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence            4566775543  456788999999999999999999999988775554 4456543

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=86.34  E-value=0.58  Score=33.42  Aligned_cols=43  Identities=28%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             hhhhhhhcC-------CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHH
Q psy6288          15 FDMDGLLLG-------YNLAIGALRLINHLHKHNIPFAIATSSAKESFELK   58 (166)
Q Consensus        15 ~~~~~~~~~-------~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~   58 (166)
                      .|+++.+..       ..+-+...++|++|+++| +++++|+.+...+...
T Consensus         6 ~DlDGTLl~~~~~~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~~~~~~~~   55 (239)
T 1u02_A            6 LDYDGTLVPIIMNPEESYADAGLLSLISDLKERF-DTYIVTGRSPEEISRF   55 (239)
T ss_dssp             EECBTTTBCCCSCGGGCCCCHHHHHHHHHHHHHS-EEEEECSSCHHHHHHH
T ss_pred             EecCCCCcCCCCCcccCCCCHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHH
Confidence            355665543       256788999999999999 9999999997766443

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=83.91  E-value=1.3  Score=32.07  Aligned_cols=53  Identities=19%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             HHhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          13 VIFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        13 ~~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      +..|+++.+..  ..+.+...++|++|+++|+.++++|+.+...+. .+.+.+|+.
T Consensus         9 i~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~-~~~~~~~~~   63 (290)
T 3dnp_A            9 LALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQ-KIAKSLKLD   63 (290)
T ss_dssp             EEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEBCSSCHHHHH-HHHHHTTCC
T ss_pred             EEEcCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHH-HHHHHcCCC
Confidence            34567775543  457889999999999999999999999987774 444445765

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=83.26  E-value=1.8  Score=30.77  Aligned_cols=52  Identities=29%  Similarity=0.400  Sum_probs=38.4

Q ss_pred             HhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          14 IFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        14 ~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      ..|+++.+-.  ..+.+...++|++++++|++++++|+.+...+...+.+ +++.
T Consensus         7 ~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~~aTGR~~~~~~~~~~~-l~~~   60 (258)
T 2pq0_A            7 FFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQ-LGID   60 (258)
T ss_dssp             EECTBTTTBCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCGGGSHHHHHH-HTCC
T ss_pred             EEeCCCCCcCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHh-cCCC
Confidence            3567775553  34678899999999999999999999987766544433 4543

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=81.54  E-value=0.95  Score=32.76  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             hhhhhhhcC--Cccchh-HHHHHHHHHHCCCCEEEEeCCchhhHH
Q psy6288          15 FDMDGLLLG--YNLAIG-ALRLINHLHKHNIPFAIATSSAKESFE   56 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g-~~~~l~~l~~~g~~i~ivS~~~~~~~~   56 (166)
                      .|+++.+..  ..+-+. +.++|++|+++|++++++|+.+...+.
T Consensus         8 ~DlDGTLl~~~~~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~~~   52 (271)
T 1rlm_A            8 TDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLI   52 (271)
T ss_dssp             ECCCCCCSCTTSCCCHHHHHHHHHHHHHHTCEEEEECSSCHHHHG
T ss_pred             EeCCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeCCcHHHHH
Confidence            456665443  335556 489999999999999999999977553

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=81.52  E-value=2.3  Score=30.35  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=41.7

Q ss_pred             HHhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHH---HHhhhcCcccccceEEec
Q psy6288          13 VIFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKESFEL---KTSRHKDTLKLFHHVVLG   75 (166)
Q Consensus        13 ~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~---~l~~~~gl~~~fd~v~~~   75 (166)
                      ++.|+++.+.. ....+++.++++.|++.|+++.++||........   .+.+.+|+....+.++++
T Consensus         8 v~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~   74 (264)
T 1yv9_A            8 YLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTA   74 (264)
T ss_dssp             EEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCGGGEEEH
T ss_pred             EEEeCCCeEEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHhcCCCCChhhEEcH
Confidence            45667776653 4467899999999999999999999986544322   232325665433444443

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=81.05  E-value=2.4  Score=29.88  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=35.8

Q ss_pred             HHhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCcc
Q psy6288          13 VIFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDTL   66 (166)
Q Consensus        13 ~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl~   66 (166)
                      ++.|+++.+.+ ....+++.++++.|++.|+++.++||..   .......+.+ +|+.
T Consensus        10 i~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~-~g~~   66 (259)
T 2ho4_A           10 VLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKK-LEFE   66 (259)
T ss_dssp             EEEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHH-TTCC
T ss_pred             EEEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHH-cCCC
Confidence            45667775553 4567899999999999999999999664   2333344433 4554

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=80.80  E-value=2  Score=30.95  Aligned_cols=51  Identities=20%  Similarity=0.144  Sum_probs=36.8

Q ss_pred             hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288          15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK   67 (166)
Q Consensus        15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~   67 (166)
                      .|+++.+..  ..+-+...++|++ +++|++++++|+.+...+...+ +.+|+..
T Consensus         7 ~DlDGTLl~~~~~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~~~~~~-~~l~~~~   59 (268)
T 1nf2_A            7 FDLDGTLLNDNLEISEKDRRNIEK-LSRKCYVVFASGRMLVSTLNVE-KKYFKRT   59 (268)
T ss_dssp             EECCCCCSCTTSCCCHHHHHHHHH-HTTTSEEEEECSSCHHHHHHHH-HHHSSSC
T ss_pred             EeCCCcCCCCCCccCHHHHHHHHH-HhCCCEEEEECCCChHHHHHHH-HHhCCCC
Confidence            355664442  3466788999999 9999999999999987765444 3356643

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=80.43  E-value=1.7  Score=31.01  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=39.1

Q ss_pred             HhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          14 IFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        14 ~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      ..|+++.+..  ..+.+...++|++++++|+.++++|+.+...+...+.+ +++.
T Consensus         9 ~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~-~~~~   62 (274)
T 3fzq_A            9 ILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGRSMGTIQDDVLS-LGVD   62 (274)
T ss_dssp             EECSBTTTBBTTTBCCHHHHHHHHHHHHTTCEEEEECSSCTTTSCHHHHT-TCCS
T ss_pred             EEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH-cCCC
Confidence            4567776553  35788999999999999999999999987766544433 4553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1qyia_	380	c.108.1.13 (A:) Hypothetical protein MW1667 (SA154	2e-13
d1zs9a1	253	c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapien	3e-12
d1u7pa_	164	c.108.1.17 (A:) Magnesium-dependent phosphatase-1,	1e-11
d1cr6a1	222	c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal	2e-11
d1te2a_	218	c.108.1.6 (A:) Phosphatase YniC {Escherichia coli	1e-10
d2b0ca1	197	c.108.1.2 (A:8-204) Putative phosphatase YihX {Esc	1e-09
d1qq5a_	245	c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xan	4e-09
d2fi1a1	187	c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Str	2e-08
d2g80a1	225	c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast	3e-08
d1o08a_	221	c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcu	4e-08
d2fdra1	222	c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {	4e-08
d1zd3a1	225	c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal	1e-07
d2hdoa1	207	c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {	2e-07
d1zrna_	220	c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pse	5e-07
d1x42a1	230	c.108.1.1 (A:1-230) Hypothetical protein PH0459 {A	1e-06
d2go7a1	204	c.108.1.6 (A:3-206) Hypothetical protein SP2064 {S	7e-06
d1ltqa1	149	c.108.1.9 (A:153-301) Polynucleotide kinase, phosp	1e-05
d2hcfa1	228	c.108.1.6 (A:2-229) Hypothetical protein CT1708 {C	2e-05
d1swva_	257	c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Ba	2e-05
d2ah5a1	210	c.108.1.6 (A:1-210) predicted phosphatase SP0104 {	7e-05
d1vjra_	261	c.108.1.14 (A:) Hypothetical protein TM1742 {Therm	2e-04
d1wzca1	243	c.108.1.10 (A:1-243) Putative mannosyl-3-phosphogl	3e-04
d2c4na1	250	c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId	4e-04
d1wvia_	253	c.108.1.14 (A:) Putative phosphatase SMU.1415c {St	5e-04
d1yv9a1	253	c.108.1.14 (A:4-256) Putative hydrolase EF1188 {En	5e-04
d1yv9a1	253	c.108.1.14 (A:4-256) Putative hydrolase EF1188 {En	0.004
d1s2oa1	244	c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {	6e-04
d2gfha1	247	c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatas	7e-04
d2hsza1	224	c.108.1.6 (A:1-224) Phosphoglycolate phosphatase G	7e-04
d1xvia_	232	c.108.1.10 (A:) Putative mannosyl-3-phosphoglycera	0.002
d1rkqa_	271	c.108.1.10 (A:) Hypothetical protein YidA {Escheri	0.003
d1l6ra_	225	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	0.003
d1nrwa_	285	c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillu	0.004

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 28/156 (17%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP--------- 79
               L+N L        IAT             +   L  F    + +A           
Sbjct: 219 EVKVLLNDLKGAGFELGIATGRPYTETV-VPFENLGLLPYFEADFIATASDVLEAENMYP 277

Query: 80  -EVKQGKPAPDVFLVAAKRFDEKP------------QPSKCLVFEDAPNGVLGAKAAGMS 126
                GKP P  ++ A    +                     +  D+   +L A+  G +
Sbjct: 278 QARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGAT 337

Query: 127 CVMV-----PDPTVPKHRTEAADLVLNSLEEFKPEL 157
            +             +     AD V+N L E +  L
Sbjct: 338 FIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVL 373

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-12
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 7/126 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             +  +    +  +   I +S + E+ +L    H     +   V            K   
Sbjct: 131 DVVPAVRKWREAGMKVYIYSSGSVEAQKLLF-GHSTEGDILELVDGHFDT--KIGHKVES 187

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP--TVPKHRTEAADLV 146
           + +   A         +  L   D       A+ A +   +V  P         +    +
Sbjct: 188 ESYRKIADSIGC--STNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSL 245

Query: 147 LNSLEE 152
           + S  E
Sbjct: 246 ITSFSE 251

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (137), Expect = 1e-11
 Identities = 24/174 (13%), Positives = 47/174 (27%), Gaps = 43/174 (24%)

Query: 13  VIFDMDGLLLG--------------------------YNLAIGALRLINHLHKHNIPFAI 46
            +FD+D  L                              L      ++  L    +P A 
Sbjct: 8   AVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAA 67

Query: 47  ATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSK 106
           A+ +++     +     D  K F    +                F     +       S+
Sbjct: 68  ASRTSEIQGANQLLELFDLGKYFIQREIYP--------GSKVTHFERLHHKTGVPF--SQ 117

Query: 107 CLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160
            + F+D    ++     G++C+ + D         +   +   LE F     GL
Sbjct: 118 MVFFDDENRNIIDVGRLGVTCIHIRDGM-------SLQTLTQGLETFAKAQAGL 164

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 222

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (137), Expect = 2e-11
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             L+    L K      I T++  +  + + S  +   +L  H        +V   KP P
Sbjct: 101 PMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEP 160

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAA 143
            ++         KP  ++ +  +D  + +  A+  GM  ++V +        E  
Sbjct: 161 QIYNFLLDTLKAKP--NEVVFLDDFGSNLKPARDMGMVTILVHNTASALRELEKV 213

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Length = 218

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

 Score = 55.6 bits (132), Expect = 1e-10
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA-ADLVLNSLEEFKPE 156
            P  C+  ED+ NG++ +KAA M  ++VP P          A++ L+SL E   +
Sbjct: 160 DPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK 214

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} Length = 197

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
             + +++ L +      + +++ +         + +      H+ L     ++   KP  
Sbjct: 88  EVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQ---DLGMRKPEA 144

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP 136
            ++    +     P  S  + F+D  + + GA   G++ ++V D T  
Sbjct: 145 RIYQHVLQAEGFSP--SDTVFFDDNADNIEGANQLGITSILVKDKTTI 190

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} Length = 245

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

 Score = 51.7 bits (122), Expect = 4e-09
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 6/134 (4%)

Query: 33  LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFL 92
                    +  AI ++ A +  +   +    T      +         +  KP PD + 
Sbjct: 99  AQCLAELAPLKRAILSNGAPDMLQALVANAGLTDSFDAVIS----VDAKRVFKPHPDSYA 154

Query: 93  VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE 152
           +  +     P  ++ L        V GAK  G S   V   +      E     +  L  
Sbjct: 155 LVEEVLGVTP--AEVLFVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTM 212

Query: 153 FKPELYGLPPFEDK 166
           FK        + + 
Sbjct: 213 FKALRMREETYAEA 226

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} Length = 187

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 86  PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADL 145
           P P+  L   +++      S  LV  D P  +   +AAG+   +        +  +  D+
Sbjct: 135 PNPESMLYLREKYQ----ISSGLVIGDRPIDIEAGQAAGLDTHLFTS---IVNLRQVLDI 187

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 3e-08
 Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 2/73 (2%)

Query: 80  EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR 139
                K     +    +    K    + L   D P  +  A   G++  +   P      
Sbjct: 154 NTSGKKTETQSYANILRDIGAKAS--EVLFLSDNPLELDAAAGVGIATGLASRPGNAPVP 211

Query: 140 TEAADLVLNSLEE 152
                 V  + E 
Sbjct: 212 DGQKYQVYKNFET 224

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} Length = 221

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

 Score = 48.7 bits (114), Expect = 4e-08
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRT----EAADLVLNSLEEF 153
            PS+ +  ED+  G+   K +G   + V  P           + +   L  L+E 
Sbjct: 161 APSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEV 215

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} Length = 222

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 48.7 bits (114), Expect = 4e-08
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 69  FHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128
           F   +  + D    + KP PD+FL  A +F   P     +V ED+ +G+ GA+AAGM  +
Sbjct: 125 FAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDR--VVVVEDSVHGIHGARAAGMRVI 182

Query: 129 MVPDP--TVPKHRTE----AADLVLNSLEEFKPEL 157
                  T P H        A+ V++ +++  P +
Sbjct: 183 GFTGASHTYPSHADRLTDAGAETVISRMQDL-PAV 216

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-07
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 6/117 (5%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH--VVLGSADPEVKQGKP 86
             L+    L K     AI T++  +    +    +   +L  H   ++ S    V   KP
Sbjct: 103 PMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQ--VGMVKP 160

Query: 87  APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAA 143
            P ++          P   + +  +D    +  A+  GM  ++V D        E  
Sbjct: 161 EPQIYKFLLDTLKASPS--EVVFLDDIGANLKPARDLGMVTILVQDTDTALKELEKV 215

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} Length = 207

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

 Score = 46.4 bits (108), Expect = 2e-07
 Identities = 7/50 (14%), Positives = 14/50 (28%)

Query: 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE 152
            P   L   D+ +    A+AA +   +      P    +          +
Sbjct: 153 APQNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRFQKPLD 202

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} Length = 220

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

 Score = 45.6 bits (106), Expect = 5e-07
 Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 2/57 (3%)

Query: 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRT-EAADLVLNSLEEFKPELY 158
             S  L          GA+  G     +           +  D  + SL     EL+
Sbjct: 165 DRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAV-VELF 220

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 230

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.5 bits (103), Expect = 1e-06
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 107 CLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEF 153
             V ++      G+K  GM+ +++      +   +  D +++ L E 
Sbjct: 176 VYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREV 222

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 42.1 bits (97), Expect = 7e-06
 Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 6/55 (10%)

Query: 101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKP 155
           +          D    V  A+ +G+  +   +       T   +  + +L +   
Sbjct: 151 QLNSDNTYYIGDRTLDVEFAQNSGIQSINFLES------TYEGNHRIQALADISR 199

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} Length = 149

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 20/135 (14%), Positives = 34/135 (25%), Gaps = 17/135 (12%)

Query: 13  VIFDMDGLLL-----------GYNLAI---GALRLINHLHKHNIPFAIATSSAKESFEL- 57
           VIFD+DG L              +  +     + L            + +     + E  
Sbjct: 10  VIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDP 69

Query: 58  --KTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPN 115
                  +  ++    V L       +      DV           P     L  +D   
Sbjct: 70  TKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQ 129

Query: 116 GVLGAKAAGMSCVMV 130
            V   +  G+ C  V
Sbjct: 130 VVEMWRRIGVECWQV 144

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} Length = 228

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 2/57 (3%)

Query: 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA--ADLVLNSLEEFKPEL 157
            PS+ ++  D  + +  A+      + V                 +  +  E    L
Sbjct: 167 SPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVL 223

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} Length = 257

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 29  GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
           G   +I  L +  I     T   +E  ++              +V      +V  G+P P
Sbjct: 103 GVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFLVTP---DDVPAGRPYP 159

Query: 89  DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
            +    A         +  +   D  + +   + AGM  V V
Sbjct: 160 WMCYKNAMELG-VYPMNHMIKVGDTVSDMKEGRNAGMWTVGV 200

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} Length = 210

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.4 bits (90), Expect = 7e-05
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 98  FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA--ADLVLNSLEE 152
              +  P + ++  D    +LGA+  G+  + +      +        D + +   E
Sbjct: 148 QTHQLAPEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLE 204

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]} Length = 261

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 5  QVLNYVTHVIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK 63
           VL+ +   I DMDG   L  +L  G+L  +  L + N  F   T+++    +    + +
Sbjct: 2  HVLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLR 61

Query: 64 D 64
          +
Sbjct: 62 N 62

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 243

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 13 VIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATS 49
          +  D+D  L+       A  +I  L          +S
Sbjct: 5  IFLDIDKTLIPGYEPDPAKPIIEELKDMGFEIIFNSS 41

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Length = 250

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 13 VIFDMDGLLLGYNLAI-GALRLINHLHKHNIPFAIATSSAKESFE 56
          VI D+DG+L+  N+A+ GA   ++ +    +P  + T+   ++ +
Sbjct: 6  VICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQ 50

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFE 56
           + D+DG +  G +        +  L +  +P+ + T++   + E
Sbjct: 5  YLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPE 49

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.0 bits (84), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH 71
           + D+DG + LG        R +  L + ++PF   T++  +S E    R  +   +   
Sbjct: 5  YLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVP 64

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 96  KRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMVPDPTVPKHRTEAA----DLVLNSL 150
                  +  + ++  D     +      G+  ++V     PK            V++SL
Sbjct: 189 AIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSL 248

Query: 151 EEFK 154
           +E+ 
Sbjct: 249 DEWT 252

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 244

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 13 VIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFE 56
          +I D+D   +G   A+  L+      + N   A AT  +  S  
Sbjct: 6  LISDLDNTWVGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSAR 49

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} Length = 247

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 7e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPT--VPKHRTEAADLVLNSLEEFK 154
           QP  C++  D     + G   AG+   +  + +  VP   +     +++S+ E  
Sbjct: 180 QPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELP 234

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} Length = 224

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

 Score = 36.4 bits (82), Expect = 7e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA--ADLVLNSLEE 152
             P + L   D+ N +  A +AG + V +               D + +   +
Sbjct: 166 LYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFAD 218

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIATS 49
          V  D+DG LL  +      A   +  L + N+P  + +S
Sbjct: 7  VFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSS 45

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} Length = 271

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 2/39 (5%)

Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIATS 49
          +  DMDG LL  +  I       I       +   + T 
Sbjct: 7  IAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTG 45

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIATSSAKESFE 56
             D+DG L   +  I   A+  I    K  +  ++ + +      
Sbjct: 6  AAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVY 51

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} Length = 285

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIATS 49
          +  D+DG LL     +       +    +  I   ++T 
Sbjct: 4  IAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTG 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	99.93
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.93
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.93
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.92
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.92
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.92
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.91
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.9
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.9
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.9
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.89
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.89
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.89
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.86
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.85
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.84
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.84
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	99.83
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.83
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	99.81
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.81
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.81
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	99.8
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	99.74
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.74
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.74
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.74
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.73
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.59
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.46
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.4
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	99.3
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	99.28
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	98.82
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	98.82
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	98.81
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	98.7
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	98.68
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	98.62
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	98.48
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	98.47
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	98.38
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	98.33
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	98.19
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	98.14
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	98.13
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	98.03
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	97.99
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	97.66
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	97.63
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	97.16
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	97.02
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	96.98
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	96.93
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	96.92
d1y8aa1	308	Hypothetical protein AF1437 {Archaeon Archaeoglobu	94.59
d2pjua1	186	Propionate catabolism operon regulatory protein Pr	94.44
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	94.08
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	93.07
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	87.11
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	86.49
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	84.17
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	83.76
d1o6ca_	377	UDP-N-acetylglucosamine 2-epimerase {Bacillus subt	81.76

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.93  E-value=6.4e-26  Score=161.61  Aligned_cols=136  Identities=16%  Similarity=0.156  Sum_probs=119.8

Q ss_pred             hhhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHH
Q psy6288          15 FDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        15 ~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~   94 (166)
                      ..+........++||+.++|+.|++ +++++|+||+....+...+ +.+|+..+|+.+++++   +...+||+|.+|+.+
T Consensus        72 ~~~~~~~~~~~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~~~~~l-~~~~l~~~f~~i~~~~---~~~~~KP~p~~~~~~  146 (207)
T d2hdoa1          72 DVMASHYDQIELYPGITSLFEQLPS-ELRLGIVTSQRRNELESGM-RSYPFMMRMAVTISAD---DTPKRKPDPLPLLTA  146 (207)
T ss_dssp             HHHTTCGGGCEECTTHHHHHHHSCT-TSEEEEECSSCHHHHHHHH-TTSGGGGGEEEEECGG---GSSCCTTSSHHHHHH
T ss_pred             hhhcccccccccccchhhhhhhhcc-ccccccccccccccccccc-cccccccccccccccc---ccccchhhhhhhccc
Confidence            3344445567899999999999975 6999999999988776555 5579999999999999   889999999999999


Q ss_pred             HHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288          95 AKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        95 ~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +++++  ++|++|+||||+.+|+.+|+++|+.++++.+|.........++++++++.||.+++
T Consensus       147 ~~~~~--~~~~~~l~VgDs~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~i~~l~dll~lf  207 (207)
T d2hdoa1         147 LEKVN--VAPQNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRFQKPLDILELF  207 (207)
T ss_dssp             HHHTT--CCGGGEEEEESSHHHHHHHHHHTCEEEEEGGGCCTTGGGSCCSEEESSGGGGGGGC
T ss_pred             cccee--eeccceeEecCCHHHHHHHHHcCCeEEEEecCCCChhHhhhcCcEeCCHHHHHhhC
Confidence            99999  99999999999999999999999999999999877776677889999999998763

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.8e-25  Score=159.12  Aligned_cols=125  Identities=26%  Similarity=0.405  Sum_probs=113.0

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|+++|++++|+||++...+...+ +.+|+.++|+.+++++   +.+.+||+|.+|+.++++++  ++
T Consensus        87 ~~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l-~~~~l~~~F~~i~~~~---~~~~~Kp~~~~~~~~~~~l~--~~  160 (218)
T d1te2a_          87 RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMFDLRDSFDALASAE---KLPYSKPHPQVYLDCAAKLG--VD  160 (218)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEECT---TSSCCTTSTHHHHHHHHHHT--SC
T ss_pred             ccccchHHHHHHHhhhcccccccccccccccccccc-cccccccccccccccc---ccccchhhHHHHHHHHHHcC--CC
Confidence            567899999999999999999999999988775555 5579999999999999   89999999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhh
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFK  154 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~  154 (166)
                      |++|+||||+.+|+.+|+++|+.+|+|.++..... ....++++++++.||.
T Consensus       161 ~~~~l~igD~~~di~aA~~~G~~~i~v~~~~~~~~~~~~~a~~~i~~l~el~  212 (218)
T d1te2a_         161 PLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELT  212 (218)
T ss_dssp             GGGEEEEESSHHHHHHHHHTTCEEEECCCTTTTTCGGGGGSSEECSCGGGCC
T ss_pred             chhcEEEeeCHHHHHHHHHcCCEEEEECCCCCccchhhcCCCEEECChhhCC
Confidence            99999999999999999999999999988754444 4567899999999985

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.93  E-value=1.2e-24  Score=155.88  Aligned_cols=131  Identities=16%  Similarity=0.185  Sum_probs=118.8

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      .....++||+.++|+.|++.|++++++||++...+...+ +.+|+..+|+.+++++   ..+..||+|+++..++++++ 
T Consensus        91 ~~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l-~~~gl~~~f~~~~~~~---~~~~~kp~p~~~~~~~~~~~-  165 (224)
T d2hsza1          91 CNISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPIL-TAFGIDHLFSEMLGGQ---SLPEIKPHPAPFYYLCGKFG-  165 (224)
T ss_dssp             TSSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECTT---TSSSCTTSSHHHHHHHHHHT-
T ss_pred             ccccchHHHHHHHHHHHhccCCcccccccccHHHHHHHH-HhcCchhhcccccccc---ccccccccchhhHHHHHHhh-
Confidence            346789999999999999999999999999988776665 5579999999999999   89999999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l  157 (166)
                       .++++|+||||+.+|+.+|+++|+.+|+|.+|.....  ....++++++++.||.+.+
T Consensus       166 -~~~~~~~~igD~~~Di~~A~~aG~~~i~v~~g~~~~~~l~~~~~d~~v~~l~dL~~ii  223 (224)
T d2hsza1         166 -LYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILKIT  223 (224)
T ss_dssp             -CCGGGEEEEESSHHHHHHHHHHTCEEEEESSSCSTTCCGGGGCCSEEESSGGGGGGGT
T ss_pred             -hhhhccchhcCcHHHHHHHHHcCCeEEEEeCCCCCcchhhhcCCCEEECCHHHHHHhh
Confidence             9999999999999999999999999999999876554  3457899999999999875

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=2.9e-25  Score=160.59  Aligned_cols=130  Identities=18%  Similarity=0.252  Sum_probs=117.1

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..++||+.++|+.|++ |++++++||++...+...+. .+|+.++||.+++++   +.+..||+|++|+.+++++|  ++
T Consensus        99 ~~~~p~~~~~L~~l~~-~~~i~i~Sn~~~~~~~~~l~-~~gl~~~fd~i~~s~---~~~~~KP~~~~~~~~~~~l~--~~  171 (230)
T d1x42a1          99 GELYPEVVEVLKSLKG-KYHVGMITDSDTEYLMAHLD-ALGIKDLFDSITTSE---EAGFFKPHPRIFELALKKAG--VK  171 (230)
T ss_dssp             CCBCTTHHHHHHHHBT-TBEEEEEESSCHHHHHHHHH-HHTCGGGCSEEEEHH---HHTBCTTSHHHHHHHHHHHT--CC
T ss_pred             CcccccHHHHHHHhhc-cCceeeeeccccccchhhhc-ccccccccccccccc---cccccchhhHHHHHHHhhhc--cc
Confidence            5789999999999974 79999999999887766664 469999999999999   89999999999999999999  99


Q ss_pred             CCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288         104 PSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      |++|+||||+. +|+.+|+++|+.++++.++.........++++++|+.++.++|..+
T Consensus       172 p~~~l~vgD~~~~Di~~A~~~G~~~v~v~~~~~~~~~~~~~d~~i~~l~el~~~l~~l  229 (230)
T d1x42a1         172 GEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDEL  229 (230)
T ss_dssp             GGGEEEEESCTTTTHHHHHTTTCEEEEECTTSCCGGGGGGSSEEESSTTHHHHHHHHH
T ss_pred             ccccceeecCcHhHHHHHHHcCCEEEEECCCCCCcccccCCCEEECCHHHHHHHHHHc
Confidence            99999999986 8999999999999999988766666678899999999999887643

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.92  E-value=2e-24  Score=158.39  Aligned_cols=132  Identities=15%  Similarity=0.171  Sum_probs=113.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ...++||+.++|+.|+++|++++|+||++...+...+.+ +|+..+| |.+++++   +....||+|.+|..++++++  
T Consensus        97 ~~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~-~~l~~~f~d~~~~~d---~~~~~KP~p~~~~~~~~~l~--  170 (257)
T d1swva_          97 YASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKE-AALQGYKPDFLVTPD---DVPAGRPYPWMCYKNAMELG--  170 (257)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHH-HHHTTCCCSCCBCGG---GSSCCTTSSHHHHHHHHHHT--
T ss_pred             cCccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHH-Hhhcccccccccccc---cccccccChHHHHHHHHHhC--
Confidence            457999999999999999999999999998877666654 6999887 7888988   88899999999999999999  


Q ss_pred             CC-CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc----c---------------------cccccchhhCChhhhhh
Q psy6288         102 PQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK----H---------------------RTEAADLVLNSLEEFKP  155 (166)
Q Consensus       102 ~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~----~---------------------~~~~~~~~~~~~~~l~~  155 (166)
                      +. +++|+||||+.+|+.+|+++|+.+|+|.+|....    +                     ...+||++++++.||.+
T Consensus       171 ~~p~~~~v~VgDs~~Di~aA~~aG~~ti~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gad~vi~~l~eL~~  250 (257)
T d1swva_         171 VYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFTIETMQELES  250 (257)
T ss_dssp             CCSGGGEEEEESSHHHHHHHHHTTSEEEEECTTCTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTCSEEESSGGGHHH
T ss_pred             CCCcceEEEEeCChhhHHHHHHCCCEEEEEccCCCCCCCCHHHHhhCCHHHHHHHHHHHHHHHHhCCCCEEECCHHHHHH
Confidence            75 5899999999999999999999999999986421    0                     12248999999999998


Q ss_pred             hhcCC
Q psy6288         156 ELYGL  160 (166)
Q Consensus       156 ~l~~~  160 (166)
                      .|..+
T Consensus       251 ii~~~  255 (257)
T d1swva_         251 VMEHI  255 (257)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87543

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.92  E-value=3.5e-24  Score=153.26  Aligned_cols=130  Identities=16%  Similarity=0.171  Sum_probs=115.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....+++++.++++.+++.|++++++||+........+ +..++..+||.+++++   +.+..||+|+.|+.+++++|  
T Consensus        90 ~~~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~-~~~~~~~~fd~~~~s~---~~~~~KP~p~~~~~~~~~~g--  163 (220)
T d1zrna_          90 LRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVV-SHAGLRDGFDHLLSVD---PVQVYKPDNRVYELAEQALG--  163 (220)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEESG---GGTCCTTSHHHHHHHHHHHT--
T ss_pred             ccccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHH-hhccccccccceeeee---eeeccccHHHHHHHHHHHhC--
Confidence            34678999999999999999999999999988776555 5579999999999999   89999999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc-ccccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK-HRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~~~~l~~~l  157 (166)
                      ++|++|+||||+..|+.+|+++|+++++|.++.... .....|+++++|+.+|.+++
T Consensus       164 ~~p~e~l~VgD~~~Di~~A~~aG~~~v~v~r~~~~~~~~~~~~d~~i~~l~el~~l~  220 (220)
T d1zrna_         164 LDRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVELF  220 (220)
T ss_dssp             SCGGGEEEEESCHHHHHHHHHHTCCEEEECTTCCCCCSSSCCCSEEESSHHHHHTTC
T ss_pred             CCCceEEEEecChHhHHHHHHcCCEEEEEcCCCCCcccccCCCCEEECCHHHHHhhC
Confidence            999999999999999999999999999998764333 34567899999999998753

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.91  E-value=2.1e-24  Score=153.24  Aligned_cols=124  Identities=13%  Similarity=0.118  Sum_probs=108.8

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      .....++||+.++|+.|+++|++++|+||+... .... ++++|+..||+.+++++   +....||++.+|+.++++++ 
T Consensus        78 ~~~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~~-~~~~-l~~~gl~~~f~~i~~s~---~~~~~Kp~~~~~~~~~~~~~-  151 (204)
T d2go7a1          78 NAQVVLMPGAREVLAWADESGIQQFIYTHKGNN-AFTI-LKDLGVESYFTEILTSQ---SGFVRKPSPEAATYLLDKYQ-  151 (204)
T ss_dssp             GGGCEECTTHHHHHHHHHHTTCEEEEECSSCTH-HHHH-HHHHTCGGGEEEEECGG---GCCCCTTSSHHHHHHHHHHT-
T ss_pred             cccCcccchHHhhhhcccccccchhhhcccchh-hhhh-hhhcccccccccccccc---cccccchhHHHHHHHHHHhC-
Confidence            345788999999999999999999999998754 4444 45679999999999999   89999999999999999999 


Q ss_pred             CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288         101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                       ++|++|+||||+.+|+.+|+++|++++++.++.      ..+++.++++.++.+++
T Consensus       152 -~~p~~~l~VgD~~~Di~~A~~~G~~~i~v~~~~------~~~~~~~~~~~dl~~l~  201 (204)
T d2go7a1         152 -LNSDNTYYIGDRTLDVEFAQNSGIQSINFLEST------YEGNHRIQALADISRIF  201 (204)
T ss_dssp             -CCGGGEEEEESSHHHHHHHHHHTCEEEESSCCS------CTTEEECSSTTHHHHHT
T ss_pred             -CCCceEEEEeCCHHHHHHHHHcCCeEEEEcCCC------CCcCeecCCHHHHHHHh
Confidence             999999999999999999999999999998874      23556778888887765

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.90  E-value=6.5e-24  Score=153.09  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=113.5

Q ss_pred             CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc---
Q psy6288          23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF---   98 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~---   98 (166)
                      ...++||+.++|+.|++.| ++++|+||+....+...+ +.+|+..+||.+++++   +....||.|..+...+..+   
T Consensus        89 ~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l-~~~gl~~~fd~i~~~~---~~~~~k~~p~~~~~~~~~~~~~  164 (228)
T d2hcfa1          89 DITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKL-KLPGIDHYFPFGAFAD---DALDRNELPHIALERARRMTGA  164 (228)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHH-HTTTCSTTCSCEECTT---TCSSGGGHHHHHHHHHHHHHCC
T ss_pred             CceecCchHHHHhhhhccccccccccCCCcchhhhhhh-hhhccccccccccccc---ccccccchhHHHHHHhhhhccc
Confidence            3578999999999999987 899999999988776665 4579999999999999   8888899998877666555   


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcC
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      +  ++|++|+||||+++|+.+|+++|+.+|+|.+|....+  ....|+++++|+.++.++|..
T Consensus       165 ~--~~p~~~l~VGD~~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~ad~vi~~~~el~~~l~~  225 (228)
T d2hcfa1         165 N--YSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLAS  225 (228)
T ss_dssp             C--CCGGGEEEEESSHHHHHHHHTTTCEEEEECCSSSCHHHHHTTCCSEEESCSCCHHHHHHH
T ss_pred             C--CChhHheeecCChHHHHHHHHcCCEEEEEcCCCCCHHHHhhCCCCEEECCHHHHHHHHHH
Confidence            6  8999999999999999999999999999999876555  334789999999999998764

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4e-23  Score=150.32  Aligned_cols=132  Identities=20%  Similarity=0.324  Sum_probs=112.8

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....++||+.++|+.|++ |++++|+||++.......+.+ .|+..+||.+++++   +.+.+||+|.+|+.++++++  
T Consensus       106 ~~~~~~~~~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~-~gl~~~fd~i~~s~---~~~~~KP~p~~~~~~~~~~~--  178 (247)
T d2gfha1         106 QHMILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEA-CACQSYFDAIVIGG---EQKEEKPAPSIFYHCCDLLG--  178 (247)
T ss_dssp             HTCCCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHH-HTCGGGCSEEEEGG---GSSSCTTCHHHHHHHHHHHT--
T ss_pred             ccCccCccHHHHHHHhhc-ccceEEeecccchhhhhhhhh-cccccccccccccc---ccccchhhhhhHHHHHHHhh--
Confidence            457899999999999985 799999999998877666655 69999999999999   89999999999999999999  


Q ss_pred             CCCCceEEEecCH-hHHHHHHHcCCeEEEecCC-CCCc-ccccccchhhCChhhhhhhhcCC
Q psy6288         102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDP-TVPK-HRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~-~~~~-~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      ++|++|+||||++ +|+.+|+++|+.++++..+ .... .....|+++++++.+|.++|.++
T Consensus       179 ~~~~~~l~iGD~~~~Di~~A~~~G~~~~~~~~~~~~~~~~~~~~p~~~i~~l~eL~~ll~~i  240 (247)
T d2gfha1         179 VQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQSI  240 (247)
T ss_dssp             CCGGGEEEEESCTTTHHHHHHHTTCSEEEEECTTCCCCSSCCCCCSEEESSGGGHHHHHHHH
T ss_pred             cCHHhcceeccChHhHHHHHHHcCCeEEEEECCCCCCcccccCCCCEEECCHHHHHHHHHHH
Confidence            9999999999997 8999999999986654433 3222 24567899999999999888654

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.90  E-value=2.4e-23  Score=149.21  Aligned_cols=128  Identities=25%  Similarity=0.311  Sum_probs=104.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|++.|++++++||+...   ....+..|+..+|+.+++++   +...+||+|.+|+.++++++  +
T Consensus        89 ~~~~~~g~~~~l~~l~~~~~~i~i~s~~~~~---~~~l~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~l~~~~--i  160 (221)
T d1o08a_          89 PADVYPGILQLLKDLRSNKIKIALASASKNG---PFLLERMNLTGYFDAIADPA---EVAASKPAPDIFIAAAHAVG--V  160 (221)
T ss_dssp             GGGBCTTHHHHHHHHHHTTCEEEECCSCTTH---HHHHHHTTCGGGCSEECCTT---TSSSCTTSTHHHHHHHHHTT--C
T ss_pred             cccccCCceeccccccccccceEEEeecchh---hHHHHhhccccccccccccc---cccccccChHHHHHHHHHcC--C
Confidence            4678999999999999999999999998643   33445579999999999999   89999999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhhc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~  158 (166)
                      +|++|+||||+..|+.+|+++|+++|+|.++..... ....++....++.++.++++
T Consensus       161 ~~~~~l~VgD~~~di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~~l~el~~  217 (221)
T d1o08a_         161 APSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWL  217 (221)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEESCHHHHCSSSEEESSGGGCCHHHHHHHHH
T ss_pred             CCceEEEEecCHHHHHHHHHcCCEEEEECChhhcccccEEcCCcccCCHHHHHHHHH
Confidence            999999999999999999999999999987632221 22234444445555655443

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=1.5e-22  Score=143.97  Aligned_cols=127  Identities=15%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ....+++|+.++|+.|+.+ ++++|+||++...+...+ +.+|+..+|+.+++++   ..  .||+|..+..++++++  
T Consensus        81 ~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~gl~~~fd~v~~~~---~~--~~~~p~~~~~~~~~~~--  151 (210)
T d2ah5a1          81 YEAQLFPQIIDLLEELSSS-YPLYITTTKDTSTAQDMA-KNLEIHHFFDGIYGSS---PE--APHKADVIHQALQTHQ--  151 (210)
T ss_dssp             GSCEECTTHHHHHHHHHTT-SCEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEEC---SS--CCSHHHHHHHHHHHTT--
T ss_pred             hcccchhHHHHHHhhhhcc-cchhhcccccchhhhHHH-Hhhccccccccccccc---cc--ccccccccchhhhhhh--
Confidence            4578999999999999876 599999999988776555 5579999999999888   43  5888999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l  157 (166)
                      ++|++|+||||+.+|+.+|+++|+++++|.+|....+  ....|+++++++.|+.++|
T Consensus       152 ~~~~~~v~VGDs~~Di~aa~~aGi~~i~v~~g~~~~~~l~~~~pd~vi~~l~el~~~l  209 (210)
T d2ah5a1         152 LAPEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEVLAYF  209 (210)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESSTTHHHHHT
T ss_pred             cccccceeecCCHHHHHHHHHcCCeEEEEcCCCCCHHHHHhCCCCEEECCHHHHHHHh
Confidence            9999999999999999999999999999999875554  3456899999999999875

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.7e-23  Score=148.62  Aligned_cols=125  Identities=13%  Similarity=0.105  Sum_probs=106.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec-CCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG-SADPEVKQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~-~~~~~~~~~Kp~~~~~~~~~~~~~~~  101 (166)
                      ...++||+.++|++|+++|++++|+||++.......+ +..|+..+|+..... +   .....||+|.+|+.++++++  
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~-~~~~~~~~~~~~~~~~d---~~~~~KP~p~~~~~~~~~~~--  198 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLF-GHSTEGDILELVDGHFD---TKIGHKVESESYRKIADSIG--  198 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HTBTTBCCGGGCSEEEC---GGGCCTTCHHHHHHHHHHHT--
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHH-HHcCcchhhhhcceeec---cccccCCCcHHHHHHHHHhC--
Confidence            4678999999999999999999999999988765554 556898888765443 4   56678999999999999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhh
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEF  153 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l  153 (166)
                      ++|++|+||||+.+|+.+|+++|+++++|.++.....  ....++.+++||.||
T Consensus       199 ~~p~~~l~vgD~~~dv~aA~~aG~~ti~v~r~g~~~~~~~~~~~~~~i~sl~EL  252 (253)
T d1zs9a1         199 CSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSEL  252 (253)
T ss_dssp             SCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTCCCCCHHHHHHSCEESSGGGC
T ss_pred             CCcCcEEEEeCCHHHHHHHHHcCCEEEEEeCCCCCCCchhhcCCCcEECChHHh
Confidence            9999999999999999999999999999987654433  445667889999987

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.89  E-value=1.5e-22  Score=146.74  Aligned_cols=134  Identities=19%  Similarity=0.222  Sum_probs=114.1

Q ss_pred             hhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          19 GLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        19 ~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      .......++|++.+.|++|+  ++.++++||+....+...+ +..++..+||.+++++   +.+..||+|++|..+++++
T Consensus        87 ~~~~~~~~~~~~~~~L~~l~--~~~~~v~s~~~~~~~~~~~-~~~~~~~~fd~v~~s~---~~~~~KP~p~~f~~a~~~l  160 (245)
T d1qq5a_          87 QAYNRLTPYPDAAQCLAELA--PLKRAILSNGAPDMLQALV-ANAGLTDSFDAVISVD---AKRVFKPHPDSYALVEEVL  160 (245)
T ss_dssp             GGGGSCCBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGG---GGTCCTTSHHHHHHHHHHH
T ss_pred             hcccccccchhhhHHHHHHh--hhceeEEeccchHHHHHHH-hhcccccccccccccc---cccccCccHHHHHHHHHHh
Confidence            33445788999999999996  6789999999988775555 4569999999999999   9999999999999999999


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC------------------------cccccccchhhCChhhhh
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP------------------------KHRTEAADLVLNSLEEFK  154 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~------------------------~~~~~~~~~~~~~~~~l~  154 (166)
                      |  ++|++|+||||+.+|+.+|+++|+++|+|.++...                        ......||++++++.||.
T Consensus       161 g--~~p~e~l~VgD~~~di~~A~~aG~~tv~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~~l~el~  238 (245)
T d1qq5a_         161 G--VTPAEVLFVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAPDFVVPALGDLP  238 (245)
T ss_dssp             C--CCGGGEEEEESCHHHHHHHHHHTCEEEEECCSCHHHHHHHTTSSSCCHHHHHHHHHSSCCTTSCCCSEEESSGGGHH
T ss_pred             C--CChhhEEEEeCCHHHHHHHHHcCCeEEEEcCCCcccccccccccccccchhhhhhhhhhhhccCCCCEEECCHHHHH
Confidence            9  99999999999999999999999999999865311                        012346899999999999


Q ss_pred             hhhcCC
Q psy6288         155 PELYGL  160 (166)
Q Consensus       155 ~~l~~~  160 (166)
                      +.+.++
T Consensus       239 ~lv~~~  244 (245)
T d1qq5a_         239 RLVRGM  244 (245)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988653

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.86  E-value=2.7e-21  Score=135.58  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=95.6

Q ss_pred             hhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288          17 MDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK   96 (166)
Q Consensus        17 ~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~   96 (166)
                      .........++||+.++|+.|++.|++++|+||++.... ..+ +++++..+||.+++++   +...+||+|..|+.+++
T Consensus        71 ~~~~~~~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~~~-~~l-~~~~l~~~fd~i~~~~---~~~~~KP~p~~~~~~~~  145 (187)
T d2fi1a1          71 EARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQVL-EIL-EKTSIAAYFTEVVTSS---SGFKRKPNPESMLYLRE  145 (187)
T ss_dssp             HHHHTTSCCBCTTHHHHHHHHHHTTCEEEEECSSCTHHH-HHH-HHTTCGGGEEEEECGG---GCCCCTTSCHHHHHHHH
T ss_pred             HHHHhhcCcccchhHHHHHHHHhhhccccccccCccchh-hhh-hhhccccccccccccc---cccccCCCHHHHHHHHH
Confidence            344455678999999999999999999999999876544 444 5579999999999999   88999999999999999


Q ss_pred             HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      +++  +  ++|+||||+..|+++|+++|+++++++++.
T Consensus       146 ~~~--~--~~~l~vgDs~~Di~aA~~aG~~~i~v~~~~  179 (187)
T d2fi1a1         146 KYQ--I--SSGLVIGDRPIDIEAGQAAGLDTHLFTSIV  179 (187)
T ss_dssp             HTT--C--SSEEEEESSHHHHHHHHHTTCEEEECSCHH
T ss_pred             HcC--C--CCeEEEeCCHHHHHHHHHcCCEEEEECCCC
Confidence            999  4  569999999999999999999999997653

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.1e-21  Score=131.91  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=93.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+++|++++|+||+........+.+.+++..+|+.+.++.        ||+|..+..++++++  +
T Consensus        44 ~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------kp~~~~~~~~~~~~~--~  113 (164)
T d1u7pa_          44 NIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLGKYFIQREIYP--------GSKVTHFERLHHKTG--V  113 (164)
T ss_dssp             EECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHTTCGGGCSEEEESS--------SCHHHHHHHHHHHHC--C
T ss_pred             ccccchHHHHHHHHHHHCCCcEEEEeccccchhhccchhcccccccceeeeccc--------CCChHHHHHHHHHhC--C
Confidence            357899999999999999999999999887666566667789999998876655        899999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK  137 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~  137 (166)
                      +|++|+||||+..|+.+|+++|+.+|+|.+|.+..
T Consensus       114 ~~~~~l~igD~~~di~aA~~aG~~~i~v~~G~~~~  148 (164)
T d1u7pa_         114 PFSQMVFFDDENRNIIDVGRLGVTCIHIRDGMSLQ  148 (164)
T ss_dssp             CGGGEEEEESCHHHHHHHHTTTCEEEECSSCCCHH
T ss_pred             ChHHEEEEcCCHHHHHHHHHcCCEEEEECCCCChH
Confidence            99999999999999999999999999999996443

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7.7e-21  Score=133.13  Aligned_cols=132  Identities=18%  Similarity=0.240  Sum_probs=99.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---------------HHHHHhhhcCcccccceE-EecC--------CC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES---------------FELKTSRHKDTLKLFHHV-VLGS--------AD   78 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---------------~~~~l~~~~gl~~~fd~v-~~~~--------~~   78 (166)
                      +..++||+.++|+.|+++|++++++||.+...               ....+.. .|.  .++.+ ++..        ..
T Consensus        25 ~~~~~~gv~e~l~~L~~~g~~~~ivTNq~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~cp~~p~~~~~~~~  101 (182)
T d2gmwa1          25 NFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLAD-RDV--DLDGIYYCPHHPQGSVEEFR  101 (182)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHH-TTC--CCSEEEEECCBTTCSSGGGB
T ss_pred             HeeECCCHHHHHHHHhhcCchhhhhhccchhhhhhhHHHhhhhhhhhhhhhhhh-hcc--cccceeeccccccccccccc
Confidence            47899999999999999999999999986311               1111111 122  12222 2221        00


Q ss_pred             CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe-EEEecCCCCCcc-cccccchhhCChhhhhhh
Q psy6288          79 PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS-CVMVPDPTVPKH-RTEAADLVLNSLEEFKPE  156 (166)
Q Consensus        79 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~  156 (166)
                      .++.++||+|.++..++++++  +++++++||||+.+|+++|+++|+. .+++.+|..... ....++++++++.|+.++
T Consensus       102 ~~~~~rKP~p~m~~~~~~~~~--i~~~~s~mVGDs~~Di~aA~~Ag~~~~~lv~~g~~~~~~~~~~ad~v~~~l~dl~~~  179 (182)
T d2gmwa1         102 QVCDCRKPHPGMLLSARDYLH--IDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQA  179 (182)
T ss_dssp             SCCSSSTTSCHHHHHHHHHHT--BCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHHCSEEESCGGGHHHH
T ss_pred             ccccccCCccccccchhhhcc--cccccccccCCCHHHHHHHHHhCCCcEEEECCCCCCCcccccCCCEEECCHHHHHHH
Confidence            136678999999999999999  9999999999999999999999996 477887754444 345689999999999998


Q ss_pred             hcC
Q psy6288         157 LYG  159 (166)
Q Consensus       157 l~~  159 (166)
                      |.+
T Consensus       180 ikk  182 (182)
T d2gmwa1         180 IKK  182 (182)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            753

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.6e-21  Score=137.41  Aligned_cols=111  Identities=14%  Similarity=0.231  Sum_probs=96.2

Q ss_pred             hhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHH
Q psy6288          19 GLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAA   95 (166)
Q Consensus        19 ~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~   95 (166)
                      .......++|++.++|++|+++|++++++||+....   .........|+.+|||.+++++   +++.+||+|++|+.++
T Consensus        91 ~~~~~~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~fd~i~~s~---~~~~~KP~p~~~~~~~  167 (222)
T d1cr6a1          91 QAMAARSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESC---QVGMIKPEPQIYNFLL  167 (222)
T ss_dssp             HHHHTCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGGCSEEEEHH---HHSCCTTCHHHHHHHH
T ss_pred             HHHhcCCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHhhhceeeehh---hccCCCCChHHHHHHH
Confidence            344567899999999999999999999999864322   2233334458999999999999   8999999999999999


Q ss_pred             HHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          96 KRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        96 ~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ++++  ++|++|+||||+.+|+.+|+++|+.+|+|.++.
T Consensus       168 ~~~~--v~p~~~l~IgD~~~Di~~A~~aG~~ti~V~~~~  204 (222)
T d1cr6a1         168 DTLK--AKPNEVVFLDDFGSNLKPARDMGMVTILVHNTA  204 (222)
T ss_dssp             HHHT--SCTTSEEEEESSSTTTHHHHHHTCEEEECCSSS
T ss_pred             HHhC--CCcceEEEEECCHHHHHHHHHcCCEEEEECCcc
Confidence            9999  999999999999999999999999999997764

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.83  E-value=2.2e-20  Score=133.61  Aligned_cols=132  Identities=21%  Similarity=0.384  Sum_probs=107.4

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP  102 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  102 (166)
                      ...++||+.++|+.|+.   +.+++|+.....+...+ +.+|+..+|+.++.+..+......||+|.+|..++++++  +
T Consensus        83 ~~~~~~g~~~~L~~l~~---~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~--~  156 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT---PRCICSNSSSHRLDMML-TKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFG--V  156 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHH-HHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHT--C
T ss_pred             ccchhhhHHHHhhhccc---cceeeeecchhhhhhhh-cccccccccceeecccccccccccccCHHHHHHHHHhhC--C
Confidence            47889999999998864   56899999988775555 557999999876554311124668999999999999999  9


Q ss_pred             CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc------cccccchhhCChhhhhhhhcCC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH------RTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      +|++|+||||+..|+.+|+++|+.+|+|.++.....      ....++++++++.+|..+|-.+
T Consensus       157 ~p~~~l~vgDs~~dv~aA~~aG~~~i~v~~~~~~~~~~~~~l~~~~ad~vi~~l~eL~~ll~~l  220 (222)
T d2fdra1         157 SPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAAM  220 (222)
T ss_dssp             CGGGEEEEESSHHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGHHHHHHHH
T ss_pred             CCceEEEEcCCHHHHHHHHHcCCEEEEEccCCCCCcchHHHHHhCCCCEEECCHHHHHHHHHHh
Confidence            999999999999999999999999999999864322      2346899999999998877543

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-20  Score=134.19  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=93.4

Q ss_pred             cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHH---HHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFE---LKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~---~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ....++||+.++|+.|+++|++++++||.......   .......++.++||.+++++   +.+.+||+|++|+.+++++
T Consensus        96 ~~~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~---~~~~~KP~~~~~~~~~~~~  172 (225)
T d1zd3a1          96 SARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESC---QVGMVKPEPQIYKFLLDTL  172 (225)
T ss_dssp             HHCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHH---HHTCCTTCHHHHHHHHHHH
T ss_pred             hcCCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhhccEEEecc---ccccchhHHHHHHHHhhhc
Confidence            45688999999999999999999999987544321   22222347889999999999   8999999999999999999


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +  ++|++|+||||+.+|+.+|+++|+++|+|.++
T Consensus       173 ~--~~p~e~l~VgD~~~Di~~A~~~G~~ti~v~~~  205 (225)
T d1zd3a1         173 K--ASPSEVVFLDDIGANLKPARDLGMVTILVQDT  205 (225)
T ss_dssp             T--CCGGGEEEEESCHHHHHHHHHTTCEEEECSSH
T ss_pred             c--cCccceeEEecCHHHHHHHHHcCCEEEEECCc
Confidence            9  99999999999999999999999999999765

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1e-20  Score=131.65  Aligned_cols=106  Identities=15%  Similarity=0.298  Sum_probs=96.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      ..+++++.+++..+++.|++++++||+........+.+..++..+|+.+++++   +.+..||+|.+|+.+++++|  ++
T Consensus        83 ~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~~~fd~v~~s~---~~~~~Kp~~~~~~~~~~~~~--~~  157 (197)
T d2b0ca1          83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQ---DLGMRKPEARIYQHVLQAEG--FS  157 (197)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHH---HHTCCTTCHHHHHHHHHHHT--CC
T ss_pred             cccCchhHHHHHHHHhcCCeEEEEeCccHHHHHHHHHHcccchhhccceeecc---cccccccchHHHHHHHHhcC--CC
Confidence            46899999999999999999999999987766555555448999999999999   89999999999999999999  99


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      |++|+||||+.+|+++|+++|+.+|+|..+.
T Consensus       158 ~~~~l~vgDs~~di~~A~~aG~~ti~v~~~~  188 (197)
T d2b0ca1         158 PSDTVFFDDNADNIEGANQLGITSILVKDKT  188 (197)
T ss_dssp             GGGEEEEESCHHHHHHHHTTTCEEEECCSTT
T ss_pred             CCeEEEEeCCHHHHHHHHHcCCEEEEECCCC
Confidence            9999999999999999999999999997664

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.81  E-value=5.7e-20  Score=131.34  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCch-----------hhHHHHHhhhcCcc-cccceEEecCCC---------CCc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAK-----------ESFELKTSRHKDTL-KLFHHVVLGSAD---------PEV   81 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~-----------~~~~~~l~~~~gl~-~~fd~v~~~~~~---------~~~   81 (166)
                      +..++||+.++|++|+++|++++|+||.+.           ..+...+.+.++.. .+++.++.+...         .++
T Consensus        46 ~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  125 (209)
T d2o2xa1          46 EIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDH  125 (209)
T ss_dssp             GCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCSEEEEECCCTTCCSTTCCSSC
T ss_pred             HeEecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHhhhcccccceEEEeccccccccccccccc
Confidence            468999999999999999999999999651           11111222211111 123444443211         134


Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~  136 (166)
                      .++||+|.++..++++++  +++++|+||||+.+|+++|+++|+.++++.+|...
T Consensus       126 ~~rKP~p~ml~~a~~~~~--i~~~~~~~VGD~~~Di~aA~~AGi~~i~v~~g~~~  178 (209)
T d2o2xa1         126 PMRKPNPGMLVEAGKRLA--LDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAA  178 (209)
T ss_dssp             TTSTTSCHHHHHHHHHHT--CCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCCE
T ss_pred             ccccccchhhhHhHHHhC--CCccceEEeCCCHHHHHHHHHCCCcEEEEeCCCCc
Confidence            567999999999999999  99999999999999999999999999999888643

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.4e-20  Score=129.39  Aligned_cols=106  Identities=12%  Similarity=0.077  Sum_probs=78.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCch--------h-------hHHHHHhhhcCccc---ccceEEecCCCCCccCC
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAK--------E-------SFELKTSRHKDTLK---LFHHVVLGSADPEVKQG   84 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~--------~-------~~~~~l~~~~gl~~---~fd~v~~~~~~~~~~~~   84 (166)
                      ...++||+.++|+.|+++|++++++||.+.        .       .+...+ ...|+..   +|+..++.+   ++..+
T Consensus        28 ~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~---~~~~~  103 (161)
T d2fpwa1          28 KLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF-TSQGVQFDEVLICPHLPAD---ECDCR  103 (161)
T ss_dssp             GCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHH-HHTTCCEEEEEEECCCGGG---CCSSS
T ss_pred             HceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhc-cccccccceeeeccccccc---ccccc
Confidence            468899999999999999999999999751        1       111122 2223321   222223334   56778


Q ss_pred             CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      ||+|.++..++++++  +++++|+||||+.+|+++|+++|++++++..+.
T Consensus       104 KP~p~~~~~~~~~~~--id~~~~~~IGD~~~Di~aA~~aG~~~i~i~~~~  151 (161)
T d2fpwa1         104 KPKVKLVERYLAEQA--MDRANSYVIGDRATDIQLAENMGINGLRYDRET  151 (161)
T ss_dssp             TTSSGGGGGGC------CCGGGCEEEESSHHHHHHHHHHTSEEEECBTTT
T ss_pred             ccccHHHHHHHHhcC--CChhcEEEECCCHHHHHHHHHcCCeEEEECCCC
Confidence            999999999999999  999999999999999999999999999997764

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.80  E-value=2.1e-19  Score=138.99  Aligned_cols=137  Identities=20%  Similarity=0.203  Sum_probs=110.1

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccce--EEecC--------CCCCccCCCCChHHHHHH
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH--VVLGS--------ADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~--v~~~~--------~~~~~~~~Kp~~~~~~~~   94 (166)
                      +|+||+.++|+.|+++|++++++||.+...+...+ +.+|+.++|+.  +++++        ........||+|..+..+
T Consensus       215 ~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~a~~il-~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~  293 (380)
T d1qyia_         215 RPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPF-ENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAA  293 (380)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHH
T ss_pred             cchhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcccCCcceEEecchhhhhhhhccccccccCCChHHHHHH
Confidence            47789999999999999999999999988775555 55799999974  44433        000346789999999988


Q ss_pred             HHHcCC------------CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-----cccccchhhCChhhhhhhh
Q psy6288          95 AKRFDE------------KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-----RTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        95 ~~~~~~------------~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~l~~~l  157 (166)
                      +...+.            ...+++|+||||+.+|+.+|+++|+.+|+|.+|.....     ....+|++++++.++...|
T Consensus       294 ~~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il  373 (380)
T d1qyia_         294 LYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVL  373 (380)
T ss_dssp             HHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHCCCCEEEEecCCCCcccHHHHHhCCCCEEECCHHHHHHHH
Confidence            755430            16789999999999999999999999999999875443     2347899999999999998


Q ss_pred             cCCCC
Q psy6288         158 YGLPP  162 (166)
Q Consensus       158 ~~~~~  162 (166)
                      ..+..
T Consensus       374 ~~l~~  378 (380)
T d1qyia_         374 DNLLE  378 (380)
T ss_dssp             SCTTT
T ss_pred             HHHHh
Confidence            87653

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.8e-18  Score=121.32  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=92.9

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH----------hhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT----------SRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV   93 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l----------~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~   93 (166)
                      ..+++++.+++.    .+..+++.|+..........          .+.+|+.++|+.+++++   . ..+||+|.+|+.
T Consensus        96 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~Fd~v~~~~---~-~~~KP~p~~f~~  167 (225)
T d2g80a1          96 APVYADAIDFIK----RKKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDIN---T-SGKKTETQSYAN  167 (225)
T ss_dssp             BCCCHHHHHHHH----HCSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECHH---H-HCCTTCHHHHHH
T ss_pred             ccchhhHHHHHh----hHHhhhhhhhccchhhhhhhhhhhhhHHHHHHhcCCccccceeeecc---c-cCCCCChhHhHH
Confidence            456666666654    35677888887654332221          23458899999998887   4 447999999999


Q ss_pred             HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhh
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEF  153 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l  153 (166)
                      +++++|  ++|++|+||||+.+|+.+|+++|+++++|.++.........+..++.+|.||
T Consensus       168 ~~~~lg--~~p~e~l~VgD~~~Dv~~A~~aG~~ti~v~r~g~~~~~~~~~~~~i~~~~eL  225 (225)
T d2g80a1         168 ILRDIG--AKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNFETL  225 (225)
T ss_dssp             HHHHHT--CCGGGEEEEESCHHHHHHHHTTTCEEEEECCTTSCCCCSSCCSCEESCSTTC
T ss_pred             HHHhcc--cCchhceeecCCHHHHHHHHHcCCEEEEEeCCCCCCCcccCCCCccCChhhC
Confidence            999999  9999999999999999999999999999987654444445566678988875

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.74  E-value=5.2e-18  Score=124.02  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             CCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc----cccccchhhCChhhhh
Q psy6288          83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH----RTEAADLVLNSLEEFK  154 (166)
Q Consensus        83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~----~~~~~~~~~~~~~~l~  154 (166)
                      .+||+|.+|+.++++++  ++|++|+||||++ +||.+|+++|+++++|.+|....+    ....||++++|+.|+.
T Consensus       178 ~gKP~p~~~~~al~~l~--i~~~~~~mIGDs~~~DI~gA~~aG~~si~V~~G~~~~~~~~~~~~~PD~vi~sl~e~~  252 (253)
T d1wvia_         178 IGKPEAVIMNKALDRLG--VKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWD  252 (253)
T ss_dssp             CSTTSHHHHHHHHHHHT--SCGGGEEEEESCTTTTHHHHHHTTCEEEEESSSSSCTTTGGGCSSCCSEEESCGGGCC
T ss_pred             eccCCcccceehhhhcc--ccccceEEEcCChHHHHHHHHHCCCCEEEECCCCCCHHHHhhcCCCCCEEECCHHHcC
Confidence            34999999999999999  9999999999998 599999999999999999865443    2235799999999873

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.7e-18  Score=122.36  Aligned_cols=72  Identities=17%  Similarity=0.292  Sum_probs=62.8

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhhh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEFK  154 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l~  154 (166)
                      ...+||+|.+++.++++++  ++|++|+||||++ +||.+|+++|+++++|.+|......    ...||++++|+.||.
T Consensus       172 ~~~~KP~p~~~~~a~~~lg--i~p~e~v~IGD~~~~DI~~a~~aG~~tilV~~G~~~~~~l~~~~~~pd~i~~sl~eL~  248 (250)
T d2c4na1         172 FYVGKPSPWIIRAALNKMQ--AHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYPSVAEID  248 (250)
T ss_dssp             EECSTTSTHHHHHHHHHHT--CCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSSCCGGGGSSCSSCCSEEESSGGGCC
T ss_pred             hhcccchhhhHhhhhhhhc--CCchheEEecCChHHHHHHHHHCCCCEEEECCCCCCHHHHHhCCCCCCEEECCHHHhC
Confidence            3357999999999999999  9999999999998 6999999999999999999765542    235799999999964

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=2.6e-18  Score=125.96  Aligned_cols=74  Identities=23%  Similarity=0.329  Sum_probs=65.9

Q ss_pred             cCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc----cccccchhhCChhhhhhh
Q psy6288          82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH----RTEAADLVLNSLEEFKPE  156 (166)
Q Consensus        82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~----~~~~~~~~~~~~~~l~~~  156 (166)
                      ..+||+|.++..++++++  +++++|+||||++ +||.+|+++|+.+++|.+|.....    ....||++++++.||.+.
T Consensus       182 ~~~KP~p~~~~~a~~~l~--~~~~~~lmVGD~~~~DI~ga~~aG~~si~V~~G~~~~~~~~~~~~~PD~ii~~l~eL~~~  259 (261)
T d1vjra_         182 IAGKPNPLVVDVISEKFG--VPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKA  259 (261)
T ss_dssp             ECSTTSTHHHHHHHHHHT--CCGGGEEEEESCHHHHHHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHHHHH
T ss_pred             ccCCCcHHHHHHHHhhhc--cCchhcceecCChhHHHHHHHHCCCcEEEECCCCCCHHHHhhcCCCCCEEECCHHHHHHH
Confidence            347999999999999999  9999999999997 799999999999999999976554    234679999999999987


Q ss_pred             h
Q psy6288         157 L  157 (166)
Q Consensus       157 l  157 (166)
                      |
T Consensus       260 l  260 (261)
T d1vjra_         260 V  260 (261)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.73  E-value=1.2e-17  Score=122.02  Aligned_cols=72  Identities=19%  Similarity=0.326  Sum_probs=62.8

Q ss_pred             ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc----cccccchhhCChhhhh
Q psy6288          81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH----RTEAADLVLNSLEEFK  154 (166)
Q Consensus        81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~----~~~~~~~~~~~~~~l~  154 (166)
                      ...+||++.+++.+++++|  ++|++|+||||++ +||.+|+++|+++++|.+|.....    ....||++++|+.|+.
T Consensus       176 ~~~~KP~~~~~~~~~~~~g--i~~~~~l~IGD~~~~DI~~a~~aG~~si~V~~G~~~~~~~~~~~~~Pd~vi~sl~e~~  252 (253)
T d1yv9a1         176 VYIGKPKAIIMERAIAHLG--VEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDEWT  252 (253)
T ss_dssp             EECSTTSHHHHHHHHHHHC--SCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCSSSTTTCSSCCSEEESSGGGCC
T ss_pred             eeecccchhHHHHHHHHhC--CCccceEEecCChHHHHHHHHHCCCCEEEECCCCCCHHHHHhcCCCCCEEECCHHHcC
Confidence            3458999999999999999  9999999999997 699999999999999999865433    3346899999999874

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=7e-16  Score=110.13  Aligned_cols=134  Identities=9%  Similarity=0.018  Sum_probs=96.1

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccce---EEecC-------CCCCccCCCCChHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH---VVLGS-------ADPEVKQGKPAPDVFL   92 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~---v~~~~-------~~~~~~~~Kp~~~~~~   92 (166)
                      ..+++||+.++|+.|+++|++++++|++....+...+ +.+|+.++|..   .+..+       .......++|++....
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l-~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  151 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKP  151 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHH-TTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSCHH
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcchhhhHHHHH-HHcCCccceeeeeEEEeCCcceeccccccccccccCCHHHHH
Confidence            4679999999999999999999999999988775554 55677766632   11111       0002233577888899


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL  160 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (166)
                      .++++++  .++++++||||+.+|+.+|+++|+.. .+.+....-.....+...+++|.++...|..+
T Consensus       152 ~~~~~~~--~~~~~~i~iGDs~~Dl~~a~~A~~~~-a~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~  216 (226)
T d2feaa1         152 SVIHELS--EPNQYIIMIGDSVTDVEAAKLSDLCF-ARDYLLNECREQNLNHLPYQDFYEIRKEIENV  216 (226)
T ss_dssp             HHHHHHC--CTTCEEEEEECCGGGHHHHHTCSEEE-ECHHHHHHHHHTTCCEECCSSHHHHHHHHHTS
T ss_pred             HHHHHhc--CCCceEEEEeCchhhHHHHHHCCEEE-EecchHHHHHHcCCCeeecCCHHHHHHHHHHH
Confidence            9999999  99999999999999999999999633 22211111112234456788999988877654

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.4e-14  Score=100.73  Aligned_cols=125  Identities=10%  Similarity=0.105  Sum_probs=83.5

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ce--EEecCCCCCccC--------CCCChHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HH--VVLGSADPEVKQ--------GKPAPDV   90 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~--v~~~~~~~~~~~--------~Kp~~~~   90 (166)
                      ...++||+.+++++|+++|++++|+|++....+ ..+.+.+|+..+.  ..  .+..++. ..+.        .+.+...
T Consensus        80 ~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v-~~i~~~lgi~~~~v~an~~~~~~~G~-~~g~~~~~p~~~~~~K~~~  157 (217)
T d1nnla_          80 PPHLTPGIRELVSRLQERNVQVFLISGGFRSIV-EHVASKLNIPATNVFANRLKFYFNGE-YAGFDETQPTAESGGKGKV  157 (217)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHH-HHHHHHTTCCGGGEEEECEEECTTSC-EEEECTTSGGGSTTHHHHH
T ss_pred             ccccCHHHHHHHHHHHhCCCEEEEECCCchHHH-HHHHHHhCCcccceeeeeeeeeehhc-cccceeeeeeeccchHHHH
Confidence            366899999999999999999999999997766 4555667886431  10  0110000 1111        1112344


Q ss_pred             HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhh
Q psy6288          91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFK  154 (166)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~  154 (166)
                      .+.+.+++    ++++|++|||+.+|+.+++.+|.. +.+............+++++.+|.+|.
T Consensus       158 v~~~~~~~----~~~~~~~vGDs~~Di~~~~~ag~~-va~~~~~~~~~~~~~ad~~i~~f~ell  216 (217)
T d1nnla_         158 IKLLKEKF----HFKKIIMIGDGATDMEACPPADAF-IGFGGNVIRQQVKDNAKWYITDFVELL  216 (217)
T ss_dssp             HHHHHHHH----CCSCEEEEESSHHHHTTTTTSSEE-EEECSSCCCHHHHHHCSEEESCGGGGC
T ss_pred             HHHHHhcc----CccccEEEEeCHhhHHHHHhCCce-EEECCCHHHHHHHHhCCCEeCCHHHhc
Confidence            45554444    488999999999999999999986 344322222234457888999998874

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.40  E-value=2.3e-12  Score=86.02  Aligned_cols=105  Identities=9%  Similarity=-0.065  Sum_probs=75.0

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhc----C-cccccceEEecCCCCCccCCCCChHHHHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHK----D-TLKLFHHVVLGSADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~----g-l~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~   94 (166)
                      ...++||+.++|+.|++.|++++++||.+...   ....+....    . ...+++......    ....+|+.......
T Consensus        34 ~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~k~~~  109 (149)
T d1ltqa1          34 TDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQRE----QGDTRKDDVVKEEI  109 (149)
T ss_dssp             GCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCCSEEEECC----TTCCSCHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHhccCeEEEEecCcHHHHHHHHHHHHHHhhhhhhcCCCcEEEeeccc----ccccCCchHHHHHH
Confidence            35789999999999999999999999986321   112222110    0 112334444433    33456677777888


Q ss_pred             HHHcCCCCCCCc-eEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288          95 AKRFDEKPQPSK-CLVFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus        95 ~~~~~~~~~~~~-~i~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +.++.  .+..+ +++|||+..|+++|+++|++++.|.+|
T Consensus       110 l~~~~--~~~~~i~~~igD~~~dv~a~~~~Gi~~~~V~~G  147 (149)
T d1ltqa1         110 FWKHI--APHFDVKLAIDDRTQVVEMWRRIGVECWQVASG  147 (149)
T ss_dssp             HHHHT--TTTCEEEEEEECCHHHHHHHHHTTCCEEECSCC
T ss_pred             HHHhc--cCCCceEEEEcCCHHHHHHHHHCCCcEEEeCCC
Confidence            88877  55555 567899999999999999999999988

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.30  E-value=5.5e-12  Score=87.78  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-------CCCccCCCCChHHHHH
Q psy6288          21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-------DPEVKQGKPAPDVFLV   93 (166)
Q Consensus        21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-------~~~~~~~Kp~~~~~~~   93 (166)
                      .....+++++.+.++.++.+|..++++|++....+.....+ .+...++...+..+.       ......+++++.....
T Consensus        71 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (210)
T d1j97a_          71 IKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEK-LGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEK  149 (210)
T ss_dssp             HHTCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHH-HTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhc-cchhhhhhhhhccccccccccccccccccccccchhhh
Confidence            34578999999999999999999999999987766555444 466655544333320       0023445667899999


Q ss_pred             HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288          94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL  157 (166)
Q Consensus        94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l  157 (166)
                      .+++++  ++++++++|||+.+|+.+++.+|+..+ + .+  .+.....++++++  |+.++.++|
T Consensus       150 ~~~~~~--~~~~~~i~iGDs~nDi~m~~~ag~~va-~-na--~~~lk~~Ad~vi~~~d~~~vl~~l  209 (210)
T d1j97a_         150 IAKIEG--INLEDTVAVGDGANDISMFKKAGLKIA-F-CA--KPILKEKADICIEKRDLREILKYI  209 (210)
T ss_dssp             HHHHHT--CCGGGEEEEESSGGGHHHHHHCSEEEE-E-SC--CHHHHTTCSEEECSSCGGGGGGGC
T ss_pred             HHHHhc--ccccceEEecCCcChHHHHHHCCCCEE-E-CC--CHHHHHhCCEEEcCCCHHHHHHHh
Confidence            999999  999999999999999999999998654 4 22  2334457788887  567777765

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=9.3e-12  Score=86.95  Aligned_cols=98  Identities=16%  Similarity=0.125  Sum_probs=74.8

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCc--------hhhHH---HHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHH
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSA--------KESFE---LKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVA   94 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~--------~~~~~---~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~   94 (166)
                      ++|++.+.|+.|++.|+.++|+||.+        .+.+.   ..+.+.++.  .++..++..   ...++||.+.|+..+
T Consensus        51 l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~rg~~s~~~~~~~~~~i~~~l~~--~~~i~~~~~---~~~~RKP~~GM~~~~  125 (195)
T d1yj5a1          51 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGV--PFQVLVATH---AGLNRKPVSGMWDHL  125 (195)
T ss_dssp             SCTTHHHHHHHHHHHTCEEEEEEECHHHHHTSSCHHHHHHHHHHHHHHHTS--CCEEEEECS---SSSSSTTSTHHHHHH
T ss_pred             ccCCHHHHHHHHHhCCcEEEEecCcchhccCCcCHHHHHHHHHHHHHHcCC--CccEEEecC---ccccCCCccHHHHHH
Confidence            47999999999999999999999985        11111   222222232  334455555   678999999999999


Q ss_pred             HHHcCC--CCCCCceEEEecC-----------------HhHHHHHHHcCCeEE
Q psy6288          95 AKRFDE--KPQPSKCLVFEDA-----------------PNGVLGAKAAGMSCV  128 (166)
Q Consensus        95 ~~~~~~--~~~~~~~i~IGD~-----------------~~Di~~a~~~G~~~i  128 (166)
                      +++++.  .++.++++||||.                 .+|+.+|.++|++..
T Consensus       126 ~~~~n~~~~id~~~S~~IGD~~gr~~~~~~~~~~~D~S~sD~~fA~N~gikF~  178 (195)
T d1yj5a1         126 QEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFA  178 (195)
T ss_dssp             HHTSSSSCCCCGGGCEEECSCCCBCTTSBTTBCSCCSCCHHHHHHHHHTCCEE
T ss_pred             HHHhcccccCCcCceEEEeCccCccccccccccccCcchhHHHHHHHCCCccc
Confidence            999852  2788999999994                 499999999999854

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.82  E-value=2.7e-08  Score=65.20  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ  103 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  103 (166)
                      .++.|++.+.++.|++.|++++++|+.....+ ..+.+.+|+..+|    +..          .|+-.....++++  . 
T Consensus        20 D~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a-~~ia~~lgI~~v~----~~~----------~p~~k~~~v~~~q--~-   81 (135)
T d2b8ea1          20 DTLKESAKPAVQELKRMGIKVGMITGDNWRSA-EAISRELNLDLVI----AEV----------LPHQKSEEVKKLQ--A-   81 (135)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHH-HHHHHHHTCSEEE----CSC----------CHHHHHHHHHHHT--T-
T ss_pred             CCCCccHHHHHHHHHHcCCEEEEEcCcchhhh-hHHHhhhhhhhhc----ccc----------chhHHHHHHHHHH--c-
Confidence            46899999999999999999999999987766 4555667885443    222          2444556667776  3 


Q ss_pred             CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhh
Q psy6288         104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPE  156 (166)
Q Consensus       104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~  156 (166)
                      ...+.||||+.+|..+-+.+++... +..+.  ......+|+++  ++|..+...
T Consensus        82 ~~~v~~vGDg~nD~~aL~~Advgia-~~~~~--~~~~~aADivl~~~~l~~i~~a  133 (135)
T d2b8ea1          82 KEVVAFVGDGINDAPALAQADLGIA-VGSGS--DVAVESGDIVLIRDDLRDVVAA  133 (135)
T ss_dssp             TSCEEEEECSSSSHHHHHHSSEEEE-ECCC----------SEEESSCCTHHHHHH
T ss_pred             CCEEEEEeCCCCcHHHHHhCCeeee-cCccC--HHHHHhCCEEEECCCHHHHHHH
Confidence            4689999999999999999987643 33332  22234555554  456666544

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=9e-09  Score=71.96  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=68.5

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcc--cccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTL--KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF   98 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~--~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~   98 (166)
                      ..+.||+.+|++.++++|++++.+||.....   ...-+.+.+|+.  ..-+.++...        ++....-+..++++
T Consensus        85 A~p~pga~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p~~~~~~vll~~~--------~~~K~~rr~~Ik~y  156 (209)
T d2b82a1          85 SIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGD--------KPGQNTKSQWLQDK  156 (209)
T ss_dssp             CEECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCTTTBCCCEECCC--------CTTCCCSHHHHHHT
T ss_pred             cCcchhHHHHHHHHHHcCCeEEEEeCCchhhHHHHHHHHHHHcCCCcccccceEeeCC--------CCCchHHHHHHHHc
Confidence            5678999999999999999999999975332   323333435663  2223344433        12222234455778


Q ss_pred             CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288          99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT  134 (166)
Q Consensus        99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~  134 (166)
                      +  +    ++++||..+|+.+|+++|+++|-|-+..
T Consensus       157 ~--I----~l~~GD~l~Df~aA~eagi~~iRi~r~~  186 (209)
T d2b82a1         157 N--I----RIFYGDSDNDITAARDVGARGIRILRAS  186 (209)
T ss_dssp             T--E----EEEEESSHHHHHHHHHTTCEEEECCCCT
T ss_pred             C--e----EEEecCCHHHHhHHHHcCCCceEeeccC
Confidence            8  5    8899999999999999999999986653

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=1.3e-08  Score=71.26  Aligned_cols=129  Identities=21%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc-----eE---------------
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-----HV---------------   72 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-----~v---------------   72 (166)
                      .|+++.+.  ...+.+.+.++|++|++.|++++++|+.+...+...+.. .++..++-     .+               
T Consensus         7 ~D~DGTL~~~~~~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~~~~~~~~-~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~   85 (230)
T d1wr8a_           7 IDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASIL-IGTSGPVVAEDGGAISYKKKRIFLASMDEE   85 (230)
T ss_dssp             EESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHH-HTCCSCEEEGGGTEEEETTEEEESCCCSHH
T ss_pred             EecCCCCcCCCCccCHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHh-cCCCcccccccceeeeccccccccccccHH
Confidence            45666554  345788999999999999999999999987665443322 23322110     00               


Q ss_pred             ----------------------------------------------------EecCCC-CCccCCCCChHHHHHHHHHcC
Q psy6288          73 ----------------------------------------------------VLGSAD-PEVKQGKPAPDVFLVAAKRFD   99 (166)
Q Consensus        73 ----------------------------------------------------~~~~~~-~~~~~~Kp~~~~~~~~~~~~~   99 (166)
                                                                          ..+... .-.....+++..++.++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iei~~~~~~K~~al~~l~~~~~  165 (230)
T d1wr8a_          86 WILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVDSGFAIHVKKPWINKGSGIEKASEFLG  165 (230)
T ss_dssp             HHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHHHHHHHTTCSCEEEECSSCEEEECTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccccceeecccceeeEEEecccccHHHHHHHHHHhccceEEeeCCcEEEEeeCCcCcchhhcccccccc
Confidence                                                                000000 012235667899999999999


Q ss_pred             CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288         100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus       100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                        ++++++++|||+.+|+.+++.+|.. +.+..+  .......+++++.+
T Consensus       166 --i~~~~~~~iGD~~NDi~ml~~ag~~-vav~na--~~~~k~~A~~v~~~  210 (230)
T d1wr8a_         166 --IKPKEVAHVGDGENDLDAFKVVGYK-VAVAQA--PKILKENADYVTKK  210 (230)
T ss_dssp             --SCGGGEEEEECSGGGHHHHHHSSEE-EECTTS--CHHHHTTCSEECSS
T ss_pred             --cchhheeeeecCccHHHHHHHCCeE-EEECCC--CHHHHHhCCEEECC
Confidence              9999999999999999999999974 445433  23344566777655

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.70  E-value=1.3e-08  Score=70.02  Aligned_cols=137  Identities=14%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             hhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-CccCCCCChHHHHHHHHH
Q psy6288          19 GLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPAPDVFLVAAKR   97 (166)
Q Consensus        19 ~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~~~Kp~~~~~~~~~~~   97 (166)
                      .........++....++.++ .+.+.+++|++........ ...++...++.......... ......+........++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (206)
T d1rkua_          63 EVIATLKPLEGAVEFVDWLR-ERFQVVILSDTFYEFSQPL-MRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIA  140 (206)
T ss_dssp             HHHTTCCCCTTHHHHHHHHH-TTSEEEEEEEEEHHHHHHH-HHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHH
T ss_pred             hhhhhccccchHHHHHHHhh-cCceEEEeccCchHHHHHH-HHHhCCchhhcceeeeecccccccccccchhhHHHHHHH
Confidence            33445778899988888775 5799999999986665444 34456655544333222000 122234456677888999


Q ss_pred             cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchh-hCChhhhhhhhcCCCC
Q psy6288          98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV-LNSLEEFKPELYGLPP  162 (166)
Q Consensus        98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~  162 (166)
                      ++  ++++++++|||+.+|+.+.+.+|...+. ..+  .......++++ .+++.++.+.|++...
T Consensus       141 ~~--i~~~eviaiGDg~NDi~Ml~~Ag~gIAm-na~--~~v~~~~~~~~~~~~~~d~~~~~~~~~~  201 (206)
T d1rkua_         141 FK--SLYYRVIAAGDSYNDTTMLSEAHAGILF-HAP--ENVIREFPQFPAVHTYEDLKREFLKASS  201 (206)
T ss_dssp             HH--HTTCEEEEEECSSTTHHHHHHSSEEEEE-SCC--HHHHHHCTTSCEECSHHHHHHHHHHHCS
T ss_pred             hc--ccccceEEecCCccCHHHHHhCCccEEE-CCC--HHHHHhCCCceeecCHHHHHHHHHHHhh
Confidence            99  9999999999999999999999998766 322  22244566774 7899999998876544

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=98.68  E-value=1.2e-07  Score=64.77  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288          33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED  112 (166)
Q Consensus        33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD  112 (166)
                      .+..|++.|+.++++|+.....+.....+ +++...    +.+        .+++...++.++++++  +++++|+||||
T Consensus        40 gi~~l~~~gi~~~iis~~~~~~v~~~~~~-l~~~~~----~~~--------~~~K~~~l~~~~~~~~--i~~~~v~~vGD  104 (177)
T d1k1ea_          40 GIKMLMDADIQVAVLSGRDSPILRRRIAD-LGIKLF----FLG--------KLEKETACFDLMKQAG--VTAEQTAYIGD  104 (177)
T ss_dssp             HHHHHHHTTCEEEEEESCCCHHHHHHHHH-HTCCEE----EES--------CSCHHHHHHHHHHHHT--CCGGGEEEEEC
T ss_pred             HHHHHhhhcEEEEEecCCchhHHHHHHhh-hccccc----ccc--------cccHHHHHHHHHHHhc--CCcceeEEecC
Confidence            68899999999999999987777665544 355332    222        2455788899999999  99999999999


Q ss_pred             CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC------hhhhhhhhc
Q psy6288         113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS------LEEFKPELY  158 (166)
Q Consensus       113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~------~~~l~~~l~  158 (166)
                      ..+|+.+-+.+|+..+.- ..  .......++++..+      +.|+.++|+
T Consensus       105 d~nDl~~l~~~g~siap~-nA--~~~vk~~A~~Vt~~~GG~GavrE~~e~il  153 (177)
T d1k1ea_         105 DSVDLPAFAACGTSFAVA-DA--PIYVKNAVDHVLSTHGGKGAFREMSDMIL  153 (177)
T ss_dssp             SGGGHHHHHHSSEEEECT-TS--CHHHHTTSSEECSSCTTTTHHHHHHHHHH
T ss_pred             CccHHHHHhhCCeEEEcC-Cc--cHHHHHhCCEEeCCCCCCchHHHHHHHHH
Confidence            999999999999754433 21  22234445555544      555555554

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.62  E-value=6e-08  Score=68.17  Aligned_cols=129  Identities=11%  Similarity=0.064  Sum_probs=83.9

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc-----eE---------------
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-----HV---------------   72 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-----~v---------------   72 (166)
                      .|+++.+.  ...+.+++.++|+.|++.|++++++|+.+...+.. +...+++..++-     .+               
T Consensus         8 ~D~DGTL~~~~~~i~~~~~~al~~l~~~g~~v~~~TGr~~~~~~~-~~~~~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~   86 (225)
T d1l6ra_           8 IDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYA-LKIFLGINGPVFGENGGIMFDNDGSIKKFFSNEG   86 (225)
T ss_dssp             EEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHH-HHHHHTCCSCEEEGGGTEEECTTSCEEESSCSHH
T ss_pred             EecCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCchhhhHH-HHHHcCCCceEEeecceEEEeCCccEEEecChHH
Confidence            46777664  35678999999999999999999999988665433 333334432110     00               


Q ss_pred             --------------------------------------------------EecCCCCCc-cCCCCChHHHHHHHHHcCCC
Q psy6288          73 --------------------------------------------------VLGSADPEV-KQGKPAPDVFLVAAKRFDEK  101 (166)
Q Consensus        73 --------------------------------------------------~~~~~~~~~-~~~Kp~~~~~~~~~~~~~~~  101 (166)
                                                                        +.+...-+. ...-.+....+.++++++  
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~K~~ai~~l~~~~~--  164 (225)
T d1l6ra_          87 TNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYS--  164 (225)
T ss_dssp             HHHHHHHHTTTSSCBCCGGGGGCSSSEEEBCCGGGHHHHHHHHHTTTEEEEEETTEEEEEETTCSHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHhcCcceeecccceeeeeccccCHHHHHHHHHHHhhcCcEEEECCcEEEecCCccchHHHHHHHhhhhc--
Confidence                                                              000000001 111233677889999999  


Q ss_pred             CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288         102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus       102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      ++++++++|||+.+|+.+.+.+|. ++.+.++  .+.....+++++.+
T Consensus       165 i~~~~v~~~GDs~nD~~m~~~a~~-~vav~na--~~~~k~~ad~v~~~  209 (225)
T d1l6ra_         165 LEYDEILVIGDSNNDMPMFQLPVR-KACPANA--TDNIKAVSDFVSDY  209 (225)
T ss_dssp             CCGGGEEEECCSGGGHHHHTSSSE-EEECTTS--CHHHHHHCSEECSC
T ss_pred             cchhheeeecCCcchHHHHHHCCe-EEEECCC--cHHHHHhCCEEECC
Confidence            999999999999999999999996 4445433  23344556666533

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.5e-07  Score=69.19  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=63.9

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec----CCCC-CccCCCC------ChHHH
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG----SADP-EVKQGKP------APDVF   91 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~----~~~~-~~~~~Kp------~~~~~   91 (166)
                      ...++||+.++++.|+++|++++|+|++....+...+ +.+|+...--.+++.    +.+. ..+...|      +....
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl-~~lg~~~~ni~I~sN~l~f~~~~~~~~~~~~~i~~~~K~~~~  211 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVI-RQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGA  211 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHH-HHTTCCBTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHcCCCccCceEEeeEEEEeCCeeEeeccCCccccccCcchh
Confidence            4788999999999999999999999999988775554 546764321123321    1000 0111111      11233


Q ss_pred             HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288          92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM  125 (166)
Q Consensus        92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~  125 (166)
                      ......+....+.+++++|||+.+|+.+|..+..
T Consensus       212 ~~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~g~~~  245 (291)
T d2bdua1         212 LKNTDYFSQLKDNSNIILLGDSQGDLRMADGVAN  245 (291)
T ss_dssp             HTTHHHHHHTTTCCEEEEEESSSGGGGTTTTCSC
T ss_pred             hhhHHHHhccCCcCcEEEEeCCHhHHHHHhCCcc
Confidence            3333322211467899999999999999886643

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=98.47  E-value=1.8e-07  Score=72.31  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=76.9

Q ss_pred             cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc--------CcccccceEEecCCCC--------------Cc--
Q psy6288          26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK--------DTLKLFHHVVLGSADP--------------EV--   81 (166)
Q Consensus        26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~--------gl~~~fd~v~~~~~~~--------------~~--   81 (166)
                      ..|.+..+|++|+++|.+++++||+...-+.....-.+        .+.++||.|+.....|              +.  
T Consensus       186 k~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~m~y~~~~~~~~g~dWr~lFDvVIv~A~KP~FF~~~~~~~~v~~~~g~  265 (458)
T d2bdea1         186 REKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGT  265 (458)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHGGGSCTTCCGGGTEEEEEESCCHHHHHHSCCCEEEECTTTCC
T ss_pred             CChhHHHHHHHHHHcCCeEEEEecCcHHHHHHHhhhhcccCCCCCCChHHhceEEEeCCCCCCccCCCCcceEEeCCCCc
Confidence            47889999999999999999999998776533333233        5678999988773100              00  


Q ss_pred             -----cCCCCC---hHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHH-HcCCeEEEecCCC
Q psy6288          82 -----KQGKPA---PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAK-AAGMSCVMVPDPT  134 (166)
Q Consensus        82 -----~~~Kp~---~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~-~~G~~~i~v~~~~  134 (166)
                           ...+|.   ..-.....+-+|  +...++++|||++ .||..++ ..|+.+++|...-
T Consensus       266 l~~~~~~~~~~vY~gGn~~~l~~llg--~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~Ii~EL  326 (458)
T d2bdea1         266 MTNVHGPIVPGVYQGGNAKKFTEDLG--VGGDEILYIGDHIYGDILRLKKDCNWRTALVVEEL  326 (458)
T ss_dssp             EEECCSCCCSEEEEECCHHHHHHHTT--CCGGGEEEEESSCCSCHHHHHHHHCSEEEEECTTH
T ss_pred             cccCCccccCCccccCCHHHHHHHhC--CCCCcEEEECCccchhhhhhhhhcCCceEEehHHH
Confidence                 001111   122556677778  8889999999999 9988886 4799999998763

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.38  E-value=1.8e-06  Score=58.26  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc----ceEEecCCC-------------CCccCCCC
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF----HHVVLGSAD-------------PEVKQGKP   86 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f----d~v~~~~~~-------------~~~~~~Kp   86 (166)
                      .++.|++.++++.|++.|++++++|+.....+. .+.+.+|+...-    +..+.+..-             .......-
T Consensus        19 Dp~R~~~~~~I~~l~~~GI~v~miTGD~~~tA~-~ia~~~Gi~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ar~   97 (168)
T d1wpga2          19 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI-AICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARV   97 (168)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHH-HHHHHTTSSCTTCCCTTTEEEHHHHHHSCHHHHHHHHHHCCEEESC
T ss_pred             CCCchhHHHHHHHHHHCcCEEEEECCCCHHHHH-HHHHHcCCCCCccccccccccccccchhhHHHHhhhhhhhhhhhcc
Confidence            478999999999999999999999999977664 444556774321    111111100             00011222


Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPEL  157 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l  157 (166)
                      .|+--..+.+.++  .....+.|+||+.+|..+-+.+.+.... ..+.  ......+++++  ++|..+...+
T Consensus        98 ~p~~K~~lv~~l~--~~g~~Va~vGDG~nD~~AL~~AdvGIa~-~~gt--~~a~~aAdivl~~~~l~~v~~~I  165 (168)
T d1wpga2          98 EPSHKSKIVEYLQ--SYDEITAMTGDGVNDAPALKKAEIGIAM-GSGT--AVAKTASEMVLADDNFSTIVAAV  165 (168)
T ss_dssp             CHHHHHHHHHHHH--HTTCCEEEEECSGGGHHHHHHSSEEEEE-TTSC--HHHHHTCSEEETTCCTHHHHHHH
T ss_pred             chhHHHHHHHHHH--hcccceeEEecCCCCHHHHHhCCEEEEe-cccc--HHHHHhCCEEEccCCHHHHHHHH
Confidence            3545555666665  4567899999999999999999865433 3331  11233455543  3466666554

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.6e-06  Score=61.96  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288          88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE  151 (166)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~  151 (166)
                      ...++.+++.++  ++++++++|||+.+|+.+.+.+|... .+..+  ..+....+++++.+..
T Consensus       199 ~~al~~l~~~~~--i~~~~ii~~GD~~ND~~ml~~~~~~~-am~na--~~~lk~~a~~i~~~~~  257 (271)
T d1rkqa_         199 GTGVKSLADVLG--IKPEEIMAIGDQENDIAMIEYAGVGV-AVDNA--IPSVKEVANFVTKSNL  257 (271)
T ss_dssp             HHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHSSEEE-ECTTS--CHHHHHHCSEECCCTT
T ss_pred             ccccceehhhcc--cchhcEEEEeCcHhHHHHHHhCCcEE-EeCCC--CHHHHHhCCEEcCCCC
Confidence            457778888899  89999999999999999999999544 44432  2334455666665443

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=2.6e-06  Score=60.83  Aligned_cols=72  Identities=18%  Similarity=0.188  Sum_probs=52.0

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh------hhhhhhcCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE------EFKPELYGL  160 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~~  160 (166)
                      +...++.+++++|  ++++++++|||+.+|+.+.+.+|...+ +.++  .++....+++++.+..      -|..+|...
T Consensus       191 K~~al~~l~~~lg--i~~~~vi~~GD~~ND~~Ml~~ag~~va-m~Na--~~~lk~~A~~v~~~~~~~Gva~~i~~~l~~~  265 (269)
T d1rlma_         191 KANGISRLLKRWD--LSPQNVVAIGDSGNDAEMLKMARYSFA-MGNA--AENIKQIARYATDDNNHEGALNVIQAVLDNT  265 (269)
T ss_dssp             HHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHCSEEEE-CTTC--CHHHHHHCSEECCCGGGTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhhhc--cccccEEEEcCCcchHHHHHhCCeEEE-eCCC--CHHHHHhCCEEcCCCCccHHHHHHHHHHhcC
Confidence            3567889999999  999999999999999999999987655 4443  2334566677776632      233444466


Q ss_pred             CCC
Q psy6288         161 PPF  163 (166)
Q Consensus       161 ~~~  163 (166)
                      .||
T Consensus       266 ~~~  268 (269)
T d1rlma_         266 YPF  268 (269)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            665

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.14  E-value=9.6e-06  Score=56.61  Aligned_cols=63  Identities=6%  Similarity=0.015  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL  157 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l  157 (166)
                      +......++++++. .++++++.|||+.+|+..-+.+| .++.+..+.  ++.    ...++++.|+.+.+
T Consensus       180 K~~al~~l~~~~~~-~~~~~~~a~GD~~ND~~Ml~~a~-~~va~~Na~--~~~----~~~~~~i~~~~~~i  242 (243)
T d1wzca1         180 KGKAAKILLDFYKR-LGQIESYAVGDSYNDFPMFEVVD-KVFIVGSLK--HKK----AQNVSSIIDVLEVI  242 (243)
T ss_dssp             HHHHHHHHHHHHHT-TSCEEEEEEECSGGGHHHHTTSS-EEEEESSCC--CTT----CEEESCHHHHHHHH
T ss_pred             cHHHHHHHHHHhcC-CCcccEEEEcCCHhHHHHHHcCC-cEEEeCCCC--hHH----HhhhhHHHHHHHhh
Confidence            35667788888731 78899999999999999999999 555555542  111    12345565655543

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=9.7e-06  Score=58.14  Aligned_cols=58  Identities=19%  Similarity=0.123  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      +..+++.+++.+|  ++++++++|||+.+|+.+.+.+|.. +.+.++  .++....+++++.+
T Consensus       214 K~~ai~~l~~~~g--i~~~~vi~~GD~~ND~~Ml~~a~~s-vam~na--~~~~k~~A~~v~~~  271 (285)
T d1nrwa_         214 KGQALKRLAKQLN--IPLEETAAVGDSLNDKSMLEAAGKG-VAMGNA--REDIKSIADAVTLT  271 (285)
T ss_dssp             HHHHHHHHHHHTT--CCGGGEEEEESSGGGHHHHHHSSEE-EECTTC--CHHHHHHCSEECCC
T ss_pred             hhhHHHHHHhhcc--cCcccEEEEeCCHHHHHHHHhCCeE-EEeCCC--CHHHHHhCCEEcCC
Confidence            4677889999999  9999999999999999999999954 456554  23344556666655

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.1e-05  Score=55.70  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL   66 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~   66 (166)
                      .|+++.+-  ...+.+.+.++|++|+++|++++++|+.+...+...+.+ +++.
T Consensus         9 ~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~i~TGR~~~~~~~~~~~-~~~~   61 (232)
T d1xvia_           9 SDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKT-LGLQ   61 (232)
T ss_dssp             EECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHH-TTCT
T ss_pred             EECCCCccCCcCcCCHHHHHHHHHHHHCCCEEEEEeCCChhhchhHHHH-hccC
Confidence            35666543  344678899999999999999999999998877655544 4654

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=97.99  E-value=1e-05  Score=57.80  Aligned_cols=57  Identities=19%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN  148 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~  148 (166)
                      +...+..+++.++  ++.+++++|||+.+|+.+.+.+|.. +.+.++  ..+....+++++.
T Consensus       208 K~~~l~~l~~~~~--i~~~~vi~~GD~~ND~~Ml~~a~~~-va~~na--~~~~k~~a~~v~~  264 (283)
T d2b30a1         208 KYTGINYLLKHYN--ISNDQVLVVGDAENDIAMLSNFKYS-FAVANA--TDSAKSHAKCVLP  264 (283)
T ss_dssp             HHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHHSCSEE-EECTTC--CHHHHHHSSEECS
T ss_pred             hHHHHHHHhhhcc--cccceEEEecCChhhHHHHHhCCcE-EEeCCC--CHHHHHhCCEEEC
Confidence            3566778888899  9999999999999999999999965 445443  2334455566654

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=3.9e-05  Score=52.37  Aligned_cols=115  Identities=13%  Similarity=0.027  Sum_probs=73.7

Q ss_pred             hhcCCccchhHHHHHHHHHHCC-CCEEEEeCCchhh---HH---HHHhhhcCcccccceEEecCCCCCccCCCCChHHHH
Q psy6288          20 LLLGYNLAIGALRLINHLHKHN-IPFAIATSSAKES---FE---LKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFL   92 (166)
Q Consensus        20 ~~~~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~---~~---~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~   92 (166)
                      .....+++||+.++++.|++.| +.+.++|......   ..   .-+.++++...+...+++.+        |       
T Consensus        69 ff~~L~p~~gA~e~l~~L~~~~~~~v~i~t~~~~~~~~~~~~k~~Wl~~~~~~~~~~~~~~t~~--------K-------  133 (195)
T d1q92a_          69 FFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRD--------K-------  133 (195)
T ss_dssp             TTTTCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHHHHHHCGGGGGGEEECSC--------S-------
T ss_pred             HHhhCCcccCHHHHHHHHhhccCccceEEccccccCcchHHHHHHHHHHhcCCCCccEEEEccc--------c-------
Confidence            4567899999999999999865 4678888764221   11   12344433322222333322        2       


Q ss_pred             HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288          93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY  158 (166)
Q Consensus        93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~  158 (166)
                           ..  +..  -++|.|++..+..+.++|..++++..+++..........-+.+-.|+...++
T Consensus       134 -----~~--~~~--d~lIDD~p~n~~~~~~~g~~~il~~~~~N~~~~~~~~~~Rv~~W~e~~~~il  190 (195)
T d1q92a_         134 -----TV--VSA--DLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAIL  190 (195)
T ss_dssp             -----TT--SCC--SEEEESCSCCCCSCSSCSSEEEEECCTTTTTCCCCTTCEEECCTTSCHHHHH
T ss_pred             -----ce--ecC--eEEecCcHHHHHHHhcCCCeEEEECCCcccCCCCCCCceeeCCHHHHHHHHH
Confidence                 11  222  2899999999999999999999998887554322333345777777766555

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.63  E-value=4.2e-05  Score=53.60  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD  132 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~  132 (166)
                      +....+.++++++  +++++++++||+.+|+.+-+.+|. ++.+.+
T Consensus       163 K~~a~~~l~~~~g--i~~~~~v~~GD~~ND~~Ml~~~~~-~vav~n  205 (244)
T d1s2oa1         163 KGNATQYLQQHLA--MEPSQTLVCGDSGNDIGLFETSAR-GVIVRN  205 (244)
T ss_dssp             HHHHHHHHHHHTT--CCGGGEEEEECSGGGHHHHTSSSE-EEECTT
T ss_pred             hhHHHHHHHHhcc--CChhhEEEEcCCCCCHHHHhhCCc-EEEeCC
Confidence            3677889999999  999999999999999999999985 444543

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.16  E-value=0.00035  Score=47.70  Aligned_cols=51  Identities=12%  Similarity=0.064  Sum_probs=36.7

Q ss_pred             CCCceEEEecCHhHHHHHHHcCCe-EEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288         103 QPSKCLVFEDAPNGVLGAKAAGMS-CVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG  159 (166)
Q Consensus       103 ~~~~~i~IGD~~~Di~~a~~~G~~-~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  159 (166)
                      ..+++++|||+.+|+.+-+.+|.. ++.++.+      ...+++++++..|+.++|..
T Consensus       169 ~~~~~i~~GDs~ND~~Mf~~~~~~~av~~g~~------~~~A~~~~~~~~ev~~~l~~  220 (229)
T d1u02a_         169 GERPAIIAGDDATDEAAFEANDDALTIKVGEG------ETHAKFHVADYIEMRKILKF  220 (229)
T ss_dssp             TTSCEEEEESSHHHHHHHHTTTTSEEEEESSS------CCCCSEEESSHHHHHHHHHH
T ss_pred             ccccceeecCCCChHHHHhccCCeEEEEeCCC------CccCeEEcCCHHHHHHHHHH
Confidence            357899999999999999998763 4444433      23566778888887776543

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.02  E-value=0.0003  Score=49.64  Aligned_cols=58  Identities=17%  Similarity=0.187  Sum_probs=45.0

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS  149 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~  149 (166)
                      +...++.++++++  ++++++++|||+.+|+.+.+.+|.. +.+..+  ..+....++++..+
T Consensus       187 K~~al~~l~~~~~--i~~~~~~a~GD~~ND~~Ml~~a~~s-vav~na--~~~lk~~A~~vt~~  244 (260)
T d2rbka1         187 KQKGIDEIIRHFG--IKLEETMSFGDGGNDISMLRHAAIG-VAMGQA--KEDVKAAADYVTAP  244 (260)
T ss_dssp             HHHHHHHHHHHHT--CCGGGEEEEECSGGGHHHHHHSSEE-EECTTS--CHHHHHHSSEECCC
T ss_pred             HHHHHHHHHHhcc--ccHhheeEecCCcccHHHHHhCCeE-EEeCCC--CHHHHHhCCEEeCC
Confidence            4667899999999  9999999999999999999999984 566544  22334455666555

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00025  Score=50.22  Aligned_cols=61  Identities=20%  Similarity=0.286  Sum_probs=47.7

Q ss_pred             ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhh
Q psy6288          87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE  152 (166)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~  152 (166)
                      +....+.++++++  ++++++++|||+.+|+.+.+.+|.. +.+.++  ..+....+++++.+..+
T Consensus       191 K~~ai~~l~~~~~--i~~~~vva~GD~~ND~~ml~~~~~s-va~~na--~~~~k~~A~~i~~~~~~  251 (267)
T d1nf2a_         191 KGKALRFLRERMN--WKKEEIVVFGDNENDLFMFEEAGLR-VAMENA--IEKVKEASDIVTLTNND  251 (267)
T ss_dssp             HHHHHHHHHHHHT--CCGGGEEEEECSHHHHHHHTTCSEE-EECTTS--CHHHHHHCSEECCCTTT
T ss_pred             hhHHHHHHHHhhc--cCcccEEEEcCCcchHHHHHhCCcE-EEeCCC--CHHHHHhCCEEcCCCCc
Confidence            4678899999999  9999999999999999999999974 555544  23455666777665543

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0025  Score=43.31  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             hhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC
Q psy6288          16 DMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD   64 (166)
Q Consensus        16 ~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g   64 (166)
                      |+++.+.  ...+-+...++|++|++.|. ++++|++........+.+.++
T Consensus         7 DlDGTLl~~~~~is~~~~~~i~~l~~~g~-~~i~tgrr~~~~~~~~~~~~~   56 (244)
T d2fuea1           7 DVDGTLTPARQKIDPEVAAFLQKLRSRVQ-IGVVGGSDYCKIAEQLGDGDE   56 (244)
T ss_dssp             ESBTTTBSTTSCCCHHHHHHHHHHTTTSE-EEEECSSCHHHHHHHHSSTTT
T ss_pred             ccccCccCCCCcCCHHHHHHHHHHHhCCC-EEEEecCChhhhhhhhhhhhc
Confidence            6666554  34577899999999999995 667888766655555555333

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00014  Score=49.25  Aligned_cols=92  Identities=8%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288          25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  104 (166)
                      ..+||+.+||+.+.+. +.++|.|.+...-+. .+.+.+.....|......+   .+...++   .+.+-++.++  .+.
T Consensus        55 ~~RP~l~eFL~~l~~~-yei~I~Ta~~~~YA~-~il~~ldp~~~~~~~~~r~---~c~~~~~---~~~KdL~~l~--~~l  124 (181)
T d1ta0a_          55 LKRPHVDEFLQRMGEL-FECVLFTASLAKYAD-PVADLLDKWGAFRARLFRE---SCVFHRG---NYVKDLSRLG--RDL  124 (181)
T ss_dssp             EECTTHHHHHHHHHHH-SEEEEECSSCHHHHH-HHHHHHCSSCCEEEEECGG---GSEEETT---EEECCGGGSC--SCG
T ss_pred             ecCCCHHHHHHHHHhc-eEEEEEcCCcHHHHH-HHHHHhccCCceeEEEEee---eeeecCC---cccccHhhcC--CCH
Confidence            4699999999999986 999999999988774 4445455555665555544   3333222   1334567778  889


Q ss_pred             CceEEEecCHhHHHHHHHcCCe
Q psy6288         105 SKCLVFEDAPNGVLGAKAAGMS  126 (166)
Q Consensus       105 ~~~i~IGD~~~Di~~a~~~G~~  126 (166)
                      +++++|.|++.-...-...|+.
T Consensus       125 ~~vvivDd~~~~~~~~~~N~I~  146 (181)
T d1ta0a_         125 RRVLILDNSPASYVFHPDNAVP  146 (181)
T ss_dssp             GGEEEECSCGGGGTTCGGGBCC
T ss_pred             HHeEEEcCChhhhhcCccCeeE
Confidence            9999999999655443344543

>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: AF1437-like
domain: Hypothetical protein AF1437
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.59  E-value=0.13  Score=35.88  Aligned_cols=41  Identities=10%  Similarity=0.092  Sum_probs=33.2

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT   65 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl   65 (166)
                      +..+.||+.+.|+.+++. .+.+|+|.+....+ ..+.+++|+
T Consensus        79 ~~~lvpgA~~~lk~l~~~-m~~yIvSTSY~qyi-~al~~~~gf  119 (308)
T d1y8aa1          79 SAKFVPDAEKAMATLQER-WTPVVISTSYTQYL-RRTASMIGV  119 (308)
T ss_dssp             HCCBCTTHHHHHHHHHTT-CEEEEEEEEEHHHH-HHHHHHTTC
T ss_pred             ceeecCCHHHHHHHHHhh-CCcEEEeccHHHHH-HHHHhhcCC
Confidence            478899999999999987 89999999886655 455555666

>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.071  Score=35.57  Aligned_cols=88  Identities=9%  Similarity=-0.047  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288          29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL  108 (166)
Q Consensus        29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i  108 (166)
                      ++..+|..+++.+-++++++-.........+.+.++++-.+  . ...          +++-.+..++++.  -.. --+
T Consensus        82 Dil~al~~a~~~~~kiavV~~~~~~~~~~~~~~ll~~~i~~--~-~~~----------~~~e~~~~v~~l~--~~G-~~v  145 (186)
T d2pjua1          82 DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ--R-SYI----------TEEDARGQINELK--ANG-TEA  145 (186)
T ss_dssp             HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEE--E-EES----------SHHHHHHHHHHHH--HTT-CCE
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCccchHHHHHHHHhCCceEE--E-Eec----------CHHHHHHHHHHHH--HCC-CCE
Confidence            44455555566788999999765444445666666654221  1 111          1333444555554  223 345


Q ss_pred             EEecCHhHHHHHHHcCCeEEEecCC
Q psy6288         109 VFEDAPNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       109 ~IGD~~~Di~~a~~~G~~~i~v~~~  133 (166)
                      +|||+.. ...|++.|++.+++..+
T Consensus       146 VVG~~~~-~~~A~~~Gl~~vli~S~  169 (186)
T d2pjua1         146 VVGAGLI-TDLAEEAGMTGIFIYSA  169 (186)
T ss_dssp             EEESHHH-HHHHHHTTSEEEESSCH
T ss_pred             EECChHH-HHHHHHcCCCEEEEeCH
Confidence            6999976 68899999999999654

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=94.08  E-value=0.086  Score=32.65  Aligned_cols=31  Identities=10%  Similarity=-0.036  Sum_probs=27.7

Q ss_pred             CccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288          24 YNLAIGALRLINHLHKHNIPFAIATSSAKES   54 (166)
Q Consensus        24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~   54 (166)
                      ..|.|++.++|+.|+++|+.+++.|+.....
T Consensus        20 ~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~   50 (122)
T d2obba1          20 GEEIPFAVETLKLLQQEKHRLILWSVREGEL   50 (122)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEECCSCCHHH
T ss_pred             ccccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence            5789999999999999999999999987443

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=93.07  E-value=0.17  Score=31.40  Aligned_cols=29  Identities=10%  Similarity=0.201  Sum_probs=26.6

Q ss_pred             CCccchhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288          23 GYNLAIGALRLINHLHKHNIPFAIATSSA   51 (166)
Q Consensus        23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~   51 (166)
                      ...|.+++.+.|+.|++.|+++++.|...
T Consensus        22 ~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~   50 (124)
T d1xpja_          22 NVLPRLDVIEQLREYHQLGFEIVISTARN   50 (124)
T ss_dssp             GCCBCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCcCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            46799999999999999999999999874

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.13  Score=34.28  Aligned_cols=46  Identities=17%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288          15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR   61 (166)
Q Consensus        15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~   61 (166)
                      .|+++.+.  ...+-|...++|++|++.|. ++++|++........+.+
T Consensus         8 fDlDGTLl~~~~~i~~~~~~al~~l~~~g~-~~i~Tgr~~~~~~~~~~~   55 (243)
T d2amya1           8 FDVDGTLTAPRQKITKEMDDFLQKLRQKIK-IGVVGGSDFEKVQEQLGN   55 (243)
T ss_dssp             EESBTTTBCTTSCCCHHHHHHHHHHTTTSE-EEEECSSCHHHHHHHHCT
T ss_pred             EcCcCCeeCCCCcCCHHHHHHHHHHHcCCC-EEEEcCCChHHhHHHHhh
Confidence            46666544  35678999999999998875 789999876655444433

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=86.49  E-value=3.5  Score=28.16  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             CccchhHHHHHHH---HHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288          24 YNLAIGALRLINH---LHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE  100 (166)
Q Consensus        24 ~~~~~g~~~~l~~---l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  100 (166)
                      ..++|+..+.++.   |-+.|+.+..+++.+.. +.+++.+. |-.-    |..-.+.=..+.+-.++..++.+.++.+ 
T Consensus       105 ~~L~PD~~etl~Aae~Lv~eGF~VlpY~~~D~v-~ak~Le~~-Gc~a----vMPlgsPIGSg~Gl~n~~~l~~i~~~~~-  177 (251)
T d1xm3a_         105 RSLLPDPVETLKASEQLLEEGFIVLPYTSDDVV-LARKLEEL-GVHA----IMPGASPIGSGQGILNPLNLSFIIEQAK-  177 (251)
T ss_dssp             TTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHH-HHHHHHHH-TCSC----BEECSSSTTCCCCCSCHHHHHHHHHHCS-
T ss_pred             CCcCCCHHHHHHHHHHHHhCCcEEEEecCCCHH-HHHHHHHc-CChh----HHHhhhhhhcCCCcCChHHHHHHHhcCC-
Confidence            4578888887765   55789999999999955 44677664 5432    2221100023455667999999999877 


Q ss_pred             CCCCCceEEEec---CHhHHHHHHHcCCeEEEecCC
Q psy6288         101 KPQPSKCLVFED---APNGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       101 ~~~~~~~i~IGD---~~~Di~~a~~~G~~~i~v~~~  133 (166)
                       ++    ++|+-   +++|...|.+.|+..|++.+.
T Consensus       178 -vP----vIvDAGIG~pSdAa~AMElG~daVLvNTA  208 (251)
T d1xm3a_         178 -VP----VIVDAGIGSPKDAAYAMELGADGVLLNTA  208 (251)
T ss_dssp             -SC----BEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             -cc----EEEecCCCCHHHHHHHHHccCCEEEechh
Confidence             43    45554   459999999999999999764

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=84.17  E-value=0.5  Score=32.16  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=31.8

Q ss_pred             hhhhhhhcC---CccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288          15 FDMDGLLLG---YNLAIGALRLINHLHKHNIPFAIATSSAKESF   55 (166)
Q Consensus        15 ~~~~~~~~~---~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~   55 (166)
                      .|+++.+-.   ..+-+...++|++|+++|++++++|+.+...+
T Consensus         6 ~DlDGTL~~~~~~~i~~~~~~al~~l~~~gi~v~~~TGR~~~~~   49 (260)
T d2rbka1           6 FDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAII   49 (260)
T ss_dssp             ECSBTTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEECSSCGGGC
T ss_pred             EECCCCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH
Confidence            467775532   33557899999999999999999999876644

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.76  E-value=3.7  Score=27.46  Aligned_cols=102  Identities=12%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce
Q psy6288          28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC  107 (166)
Q Consensus        28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  107 (166)
                      +...++++.+++.|.+.+++.+...+.-  .+...+...++.|.+.-....+.....+..+..+.++.+--.  ..++--
T Consensus        95 ~~~~~~i~~i~~~g~~~Glal~p~t~~~--~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~--~~~~~~  170 (220)
T d1h1ya_          95 DNWQELIQSIKAKGMRPGVSLRPGTPVE--EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRK--KYPSLD  170 (220)
T ss_dssp             TTHHHHHHHHHHTTCEEEEEECTTSCGG--GGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHH--HCTTSE
T ss_pred             hhHHHHHHHHHHcCCCcceeeccccchh--HHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHh--cCCCce
Confidence            4467889999999999999987654321  111111222445665444333345556777777777655433  335556


Q ss_pred             EEEecCH--hHHHHHHHcCCeEEEecCC
Q psy6288         108 LVFEDAP--NGVLGAKAAGMSCVMVPDP  133 (166)
Q Consensus       108 i~IGD~~--~Di~~a~~~G~~~i~v~~~  133 (166)
                      +.|.-+.  ..+....++|+..+.++..
T Consensus       171 I~VDGGIn~~~i~~l~~aGad~~V~GS~  198 (220)
T d1h1ya_         171 IEVDGGLGPSTIDVAASAGANCIVAGSS  198 (220)
T ss_dssp             EEEESSCSTTTHHHHHHHTCCEEEESHH
T ss_pred             EEEEecCCHHHHHHHHHCCCCEEEECHH
Confidence            7776655  6688889999998888654

>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: UDP-N-acetylglucosamine 2-epimerase
domain: UDP-N-acetylglucosamine 2-epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.76  E-value=0.97  Score=32.92  Aligned_cols=99  Identities=15%  Similarity=0.105  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHC-CCC-EEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCC---hHHHHHHHHHcCCCCCC
Q psy6288          30 ALRLINHLHKH-NIP-FAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA---PDVFLVAAKRFDEKPQP  104 (166)
Q Consensus        30 ~~~~l~~l~~~-g~~-i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~---~~~~~~~~~~~~~~~~~  104 (166)
                      +..+++.|++. ++. ..|+|+....... ...+.+++..-++.-+..+   .....+--   ...+...+.+..    |
T Consensus        18 l~pli~~l~~~~~~~~~li~tG~H~~~~~-~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~k----p   89 (377)
T d1o6ca_          18 MAPLVLELKKYPEIDSYVTVTAQHRQMLD-QVLDAFHIKPDFDLNIMKE---RQTLAEITSNALVRLDELFKDIK----P   89 (377)
T ss_dssp             HHHHHHHGGGCTTEEEEEEECCSCGGGTH-HHHHHTTCCCSEECCCCCT---TCCHHHHHHHHHHHHHHHHHHHC----C
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCHHHHH-HHHhhcCCCCceeeecCCC---CCCHHHHHHHHHHhhhhhhhhcc----c
Confidence            34578888775 444 4456676644443 3344456643222222222   11110000   011234444444    9


Q ss_pred             CceEEEecCHh---HHHHHHHcCCeEEEecCCCCC
Q psy6288         105 SKCLVFEDAPN---GVLGAKAAGMSCVMVPDPTVP  136 (166)
Q Consensus       105 ~~~i~IGD~~~---Di~~a~~~G~~~i~v~~~~~~  136 (166)
                      +=+++.||+..   -..+|...|++.+.+..|..+
T Consensus        90 D~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s  124 (377)
T d1o6ca_          90 DIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRT  124 (377)
T ss_dssp             SEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCC
T ss_pred             ceeEeeecccccchhhhhhhhccceEEEEeccccc
Confidence            99999999774   456677789999999988655