Psyllid ID: psy62

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFNSSII
Secondary Structure (PSIPRED)
cccccccccccEEEccccEEEEEcccccccccccEEEEEEccccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHHHccccccccccHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHccHHHccccccccccccccEccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEccccc
Coil and Loop (DISEMBL)
kcfecnahnpqwaSVTYGIWICLEcsgkhrglgvHLSFVRSISMDKWKDIELEKMKvggnkaahdflnaqpdwddtmTIQQKYNTKAAALYrdkvsssymfntfttkgifdfsqsggstvtssyqgggggyqsgggggmvnsasfqseKEAFFSRKqqenlsrpdhlppsqggryagfgnsvesppprsvssqelfggAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFNSSII
Flexible Loop (DISEMBL)
kcfecnahnpqwASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQqenlsrpdhlppsQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAikyggmatqkVTEIGTtvtekvrdwDFMACLFNSSII
Low Complexity Region (SEG)
KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFsqsggstvtssyqgggggyqsgggggMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNsvesppprsvssQELFGGAVSSLTSGWSMFsssatklaskatENAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFNSSII
Disordered region (IsUnstruct)
**FECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDF***************************************************************************************************************NAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFN****
Disordered Region (DISOPRED)
KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDW*D**TIQQKYNTKAAALYRDKV************************************************************************************************************************************************************FMACLFNSS**
Disordered Region (DISEMBL)
KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNS************ELFGGAVSSLTSGWSMF*********KATENAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFNSSII
Disordered Region (DISPRO)
KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMF****************************************************************H*************NSV******SVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFNSSI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKVTEIGTTVTEKVRDWDFMACLFNSSII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q8N6T3	406	ADP-ribosylation factor G	yes	N/A	0.870	0.561	0.463	2e-53
Q9EPJ9	414	ADP-ribosylation factor G	yes	N/A	0.858	0.543	0.450	1e-50
Q62848	415	ADP-ribosylation factor G	yes	N/A	0.866	0.546	0.461	5e-50
O80925	456	ADP-ribosylation factor G	yes	N/A	0.904	0.519	0.372	7e-40
P35197	352	ADP-ribosylation factor G	yes	N/A	0.862	0.642	0.376	9e-40
O94601	321	Uncharacterized protein C	yes	N/A	0.896	0.732	0.354	7e-34
Q9M354	459	Probable ADP-ribosylation	no	N/A	0.354	0.202	0.553	1e-26
Q8H100	413	Probable ADP-ribosylation	no	N/A	0.343	0.217	0.527	7e-24
Q9FIQ0	402	Probable ADP-ribosylation	no	N/A	0.343	0.223	0.505	3e-23
O82171	395	ADP-ribosylation factor G	no	N/A	0.343	0.227	0.516	9e-23

>sp|Q8N6T3|ARFG1_HUMAN ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 115/248 (46%), Positives = 150/248 (60%), Gaps = 20/248 (8%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct: 22  CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVT 121
              +FL +Q D+D   ++Q+KYN++AAAL+RDKV +               ++    ++ 
Sbjct: 82  KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVA--------------LAEGREWSLE 127

Query: 122 SSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPD--HLPPSQGGRYAGFG 179
           SS        Q      MV+  S Q +     S K  E+    D      +QG RY GFG
Sbjct: 128 SSPAQNWTPPQPRTLPSMVHRVSGQPQSVTASSDKAFEDWLNDDLGSYQGAQGNRYVGFG 187

Query: 180 NSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKVTEI 239
           N   +PPP+     +    A+SSL SGWS F++ A++ AS A E A K+G  A+QK +E+
Sbjct: 188 N---TPPPQK-KEDDFLNNAMSSLYSGWSSFTTGASRFASAAKEGATKFGSQASQKASEL 243

Query: 240 GTTVTEKV 247
           G ++ E V
Sbjct: 244 GHSLNENV 251

GTPase-activating protein (GAP) for the ADP ribosylation factor 1 (ARF1). Involved in membrane trafficking and /or vesicle transport. Promotes hydrolysis of the ARF1-bound GTP and thus, is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles, a prerequisite for vesicle's fusion with target compartment. Probably regulates ARF1-mediated transport via its interaction with the KDELR proteins and TMED2. Overexpression induces the redistribution of the entire Golgi complex to the endoplasmic reticulum, as when ARF1 is deactivated. Its activity is stimulated by phosphoinosides and inhibited by phosphatidylcholine.
Homo sapiens (taxid: 9606)

>sp|Q9EPJ9|ARFG1_MOUSE ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2

 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 153/251 (60%), Gaps = 26/251 (10%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct: 22  CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKG--IFDFSQSGGST 119
              +FL  Q D++ + ++Q KY+++AAAL+RDKV++      ++ +     +++     T
Sbjct: 82  KFREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWTPPQPKT 141

Query: 120 VTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGG---RYA 176
           +  +     G  QS    G           +AF     ++ L+  D L   QG    RY 
Sbjct: 142 LQFTAHRASGQPQSAAASG----------DKAF-----EDWLN--DDLGSYQGAQENRYV 184

Query: 177 GFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKV 236
           GFGN+V  PP +     +    A+SSL SGWS F++ A+K AS A E A K+G  A+QK 
Sbjct: 185 GFGNTV--PPQK--REDDFLNNAMSSLYSGWSSFTTGASKFASAAKEGATKFGSQASQKA 240

Query: 237 TEIGTTVTEKV 247
           +E+G ++ E V
Sbjct: 241 SELGHSLNENV 251

GTPase-activating protein (GAP) for the ADP ribosylation factor 1 (ARF1). Involved in membrane trafficking and /or vesicle transport. Promotes hydrolysis of the ARF1-bound GTP and thus, is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles, a prerequisite for vesicle's fusion with target compartment. Probably regulates ARF1-mediated transport via its interaction with the KDELR proteins and TMED2. Overexpression induces the redistribution of the entire Golgi complex to the endoplasmic reticulum, as when ARF1 is deactivated. Its activity is stimulated by phosphoinosides and inhibited by phosphatidylcholine.

Mus musculus (taxid: 10090)

>sp|Q62848|ARFG1_RAT ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/249 (46%), Positives = 151/249 (60%), Gaps = 22/249 (8%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct: 22  CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTVT 121
              +FL AQ D++ + ++Q KY+++AAAL+RDKV+      T      +    S     T
Sbjct: 82  KFREFLEAQDDYEPSWSLQDKYSSRAAALFRDKVA------TLAEGKEWSLESSPAQNWT 135

Query: 122 SSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGG---RYAGF 178
              Q     + +    G   + +   +K AF     ++ L+  D L   QG    RY GF
Sbjct: 136 PP-QPKTLQFTAHRPAGQPQNVTTSGDK-AF-----EDWLN--DDLGSYQGAQENRYVGF 186

Query: 179 GNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKVTE 238
           GN+V  PP +     +    A+SSL SGWS F++ A+K AS A E A K+G  A+QK +E
Sbjct: 187 GNTV--PPQK--REDDFLNSAMSSLYSGWSSFTTGASKFASAAKEGATKFGSQASQKASE 242

Query: 239 IGTTVTEKV 247
           +G ++ E V
Sbjct: 243 LGHSLNENV 251

GTPase-activating protein (GAP) for the ADP ribosylation factor 1 (ARF1). Involved in membrane trafficking and /or vesicle transport. Promotes hydrolysis of the ARF1-bound GTP and thus, is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles, a prerequisite for vesicle's fusion with target compartment. Probably regulates ARF1-mediated transport via its interaction with the KDELR proteins and TMED2. Overexpression induces the redistribution of the entire Golgi complex to the endoplasmic reticulum, as when ARF1 is deactivated. Its activity is stimulated by phosphoinosides and inhibited by phosphatidylcholine.

Rattus norvegicus (taxid: 10116)

>sp|O80925|AGD7_ARATH ADP-ribosylation factor GTPase-activating protein AGD7 OS=Arabidopsis thaliana GN=AGD7 PE=1 SV=1

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 56/293 (19%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           C +C+  NPQWAS++YGI++CLECSGKHRGLGVH+SFVRS++MD W +I+++KM  GGN+
Sbjct: 19  CVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMDAGGNE 78

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGG---- 117
             ++FL AQ        I  KYN+ AA++YRD++ +      +    I   S  GG    
Sbjct: 79  RLNNFL-AQYGISKETDIISKYNSNAASVYRDRIQALAEGRQWRDPPIVKESVGGGLMNK 137

Query: 118 ---------------------------STVTSSYQGGGGGYQSGGGGGMVNSASFQ---- 146
                                      ST     Q  G    SGG G    S S +    
Sbjct: 138 KPPLSQGGGRDSGNGGWDNWDNDDSFRSTDMRRNQSAGDFRSSGGRGAPAKSKSSEDIYS 197

Query: 147 --------SEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGG 198
                   + KE+FF+++  EN S+P+ LPPSQGG+Y GFG+   SP P   S+Q+  GG
Sbjct: 198 RSQLEASAANKESFFAKRMAENESKPEGLPPSQGGKYVGFGS---SPGPAPRSNQQSGGG 254

Query: 199 AV-SSLTSGWSMFSSSATKLASKATENAIKYGGMA-TQKVTEIG--TTVTEKV 247
            V S ++ G+   S     L + +  N ++ G M  T KV E G   TV+E V
Sbjct: 255 DVFSVMSEGFGRLS-----LVAASAANVVQTGTMEFTSKVKEGGLDQTVSETV 302

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Involved in protein trafficking by controlling ARF1 activity; may participate in COPI vesicle formation at the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P35197|GCS1_YEAST ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCS1 PE=1 SV=1

 Score =  164 bits (414), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 136/247 (55%), Gaps = 21/247 (8%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KC +C A NPQWA+  +G +ICLEC+G HRGLGVH+SFVRSI+MD++K  EL +M+ GGN
Sbjct: 25  KCMDCGAPNPQWATPKFGAFICLECAGIHRGLGVHISFVRSITMDQFKPEELLRMEKGGN 84

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDF-------- 112
           +   ++  +  + D ++  + KY+   A  Y++K++       F  +   DF        
Sbjct: 85  EPLTEWFKSH-NIDLSLPQKVKYDNPVAEDYKEKLTCLCEDRVFEEREHLDFDASKLSAT 143

Query: 113 SQSGGSTVTSSYQGGGG----GYQSGGGGGMVNSASFQSEK-EAFFSRKQQENLSRPDHL 167
           SQ+  S      Q   G      +S       N A+FQ EK EA+F+   ++N SRPDHL
Sbjct: 144 SQTAASATPGVAQSREGTPLENRRSATPANSSNGANFQKEKNEAYFAELGKKNQSRPDHL 203

Query: 168 PPSQGGRYAGFGNSVESPPPR-------SVSSQELFGGAVSSLTSGWSMFSSSATKLASK 220
           PPSQGG+Y GFG++   PP         ++S +      + +L+ GW +FSS+ TK    
Sbjct: 204 PPSQGGKYQGFGSTPAKPPQERSAGSSNTLSLENFQADPLGTLSRGWGLFSSAVTKSFED 263

Query: 221 ATENAIK 227
             E  IK
Sbjct: 264 VNETVIK 270

GTPase-activating protein (GAP) for ARF1 and ARF2. Involved in intracellular vesicular transport. Required for transport from the trans-Golgi network. Implicated in the regulation of retrograde transport from the Golgi to the ER and in actin cytoskeletal organization. May be involved in the maintenance of mitochondrial morphology, possibly through organizing the actin cytoskeleton in Saccharomyces.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94601|YC8E_SCHPO Uncharacterized protein C622.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.14 PE=4 SV=2

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 137/268 (51%), Gaps = 33/268 (12%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C+A NPQWAS   GI+ICL+CSG+HRGLGV  SFVRSI+MD W + +++ M+VGGN
Sbjct: 16  KCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSERQVKMMEVGGN 75

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTV 120
             A  FL+  P +    +I++KYNT  A   R K+ +                  G   V
Sbjct: 76  SNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKIRAEV---------------DGVEWV 120

Query: 121 TSSYQGGGGGYQSGGGGGMVNSASFQSEK--EAFFSRKQQENLSRPDHLPPSQGGRYAGF 178
                     + S      V +    S++  + +F++    N  RPD LPPSQGGRY GF
Sbjct: 121 KVDRPKSVSSHASVTSSSTVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGF 180

Query: 179 GNSVESPPPRSVSS------QELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMA 232
           G+S    P  S  +       +L    VS+L+ GW+MFS S ++      ++ I+ G   
Sbjct: 181 GSSNSVNPNSSARNNGGSFLDQLSSNPVSALSHGWNMFSRSVSQQIQDVNKSYIQPG--- 237

Query: 233 TQKVTEIGTTVTEKVRDWDFMACLFNSS 260
              +T++    T K    D+M  + N S
Sbjct: 238 ---ITKVQDPETRK----DYMNAINNFS 258

GTPase-activating protein for the ADP ribosylation factor family.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9M354|AGD6_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 70/94 (74%), Gaps = 1/94 (1%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           C +C   NPQWASV+YGI++CLECSGKHRGLGVH+SFVRS++MD W  I+++KM+ GGN+
Sbjct: 19  CVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSAIQIKKMEAGGNE 78

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
             + F  AQ        I  KYN+ AA++YRD++
Sbjct: 79  RLNKFF-AQYGIAKETDIISKYNSNAASVYRDRI 111

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H100|AGD8_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CF+C+A NP WASVTYGI++C++CS  HR LGVH+SFVRS ++D W   +L  M  GGN 
Sbjct: 28  CFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNN 87

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR 92
            A  F   Q  W D   I+ KY ++AA LYR
Sbjct: 88  RAQVFFK-QHGWTDGGKIEAKYTSRAADLYR 117

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIQ0|AGD9_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CF+C+A NP WASV YGI++C++CS  HR LGVH+SFVRS ++D W   +L  M  GGN 
Sbjct: 25  CFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNN 84

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR 92
            A  F   Q  W+D   I+ KY ++AA +YR
Sbjct: 85  RAQVFFK-QHGWNDGGKIEAKYTSRAADMYR 114

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|O82171|AGD10_ARATH ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1

 Score =  107 bits (267), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CF+CNA NP WASVTYGI++C++CS  HR LGVH+SFVRS ++D W   +L+ M  GGN 
Sbjct: 25  CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNN 84

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR 92
            A  F   Q  W D    + KY ++AA LY+
Sbjct: 85  RAQVFFK-QYGWSDGGKTEAKYTSRAADLYK 114

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Activates ARF1 and ARF2. Required for female gametophyte development. Involved in root hair and pollen tube growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
242023977	449	ADP-ribosylation factor GTPase-activatin	0.885	0.516	0.598	6e-78
383858678	400	PREDICTED: ADP-ribosylation factor GTPas	0.900	0.59	0.629	2e-74
328709419	389	PREDICTED: ADP-ribosylation factor GTPas	0.904	0.609	0.572	3e-74
307191453	962	ADP-ribosylation factor GTPase-activatin	0.912	0.248	0.599	5e-74
158295880	512	AGAP006462-PA [Anopheles gambiae str. PE	0.919	0.470	0.501	5e-74
340718272	400	PREDICTED: ADP-ribosylation factor GTPas	0.927	0.607	0.606	1e-73
328781190	395	PREDICTED: ADP-ribosylation factor GTPas	0.896	0.594	0.609	2e-73
350401771	400	PREDICTED: ADP-ribosylation factor GTPas	0.927	0.607	0.603	2e-73
380028105	396	PREDICTED: LOW QUALITY PROTEIN: ADP-ribo	0.896	0.593	0.601	2e-72
332026122	406	ADP-ribosylation factor GTPase-activatin	0.885	0.571	0.575	1e-71

>gi|242023977|ref|XP_002432407.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis] gi|212517830|gb|EEB19669.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/264 (59%), Positives = 187/264 (70%), Gaps = 32/264 (12%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC AHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSI+MDKWKD+ELEKMKVGGN
Sbjct: 21  KCFECGAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSITMDKWKDVELEKMKVGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS---------------SYMFNTFT 105
           K A +FLNAQ D++D+M IQQKYNTKAAALYRDK+S+               +Y+ NT +
Sbjct: 81  KNAREFLNAQKDYNDSMPIQQKYNTKAAALYRDKISALAQGKSWDISSSSAQNYIGNTLS 140

Query: 106 TKGIFDFSQSGGSTVTSSYQGGGGGYQ----------SGGG-GGMVNSASFQSEKEAFFS 154
           +      + S      +SY    GGYQ          SG     + N   F+ +KEAFF+
Sbjct: 141 SSTQSLTTSSASHNQNNSY----GGYQNTEWNSDYHHSGSSYNSLSNDPGFKDQKEAFFA 196

Query: 155 RKQQENLSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSA 214
           RKQ EN  RPD LPP+QGG+Y+GFG +++ PPPRS +SQE    A+SSL SGWS+FS SA
Sbjct: 197 RKQNENAQRPDDLPPNQGGKYSGFGYTMD-PPPRS-TSQEFVDNALSSLASGWSLFSVSA 254

Query: 215 TKLASKATENAIKYGGMATQKVTE 238
           TKLASKATE+A K G MA+ KV E
Sbjct: 255 TKLASKATESACKIGEMASNKVKE 278

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858678|ref|XP_003704826.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like [Megachile rotundata]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/251 (62%), Positives = 186/251 (74%), Gaps = 15/251 (5%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC  HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKD+ELEKMKVGGN
Sbjct: 21  KCFECGTHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDLELEKMKVGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTF--TTKGIFDFSQS--- 115
           + A +F  +QPDWDD M+I QKYNTKAAALYRDK+++      +  TT    DF  S   
Sbjct: 81  RNAREFFESQPDWDDNMSITQKYNTKAAALYRDKIATLARGENWSPTTSMAKDFQPSMYW 140

Query: 116 GGSTVTSSYQG-GGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGR 174
                 SSYQG     YQ+        + S++S+ EAFF+RKQ EN +RPD++PPSQGG+
Sbjct: 141 ENQQENSSYQGDASNSYQN------FVANSYKSQTEAFFARKQTENANRPDNIPPSQGGK 194

Query: 175 YAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQ 234
           Y GFG  +E+ PPRS SSQE F  AVSSL SGWS+FSSSA+K+ASKATENA+K G  A+Q
Sbjct: 195 YGGFGYQMEA-PPRS-SSQEFFDTAVSSLASGWSIFSSSASKIASKATENAMKIGEFASQ 252

Query: 235 KVTEIGTTVTE 245
           KV + GT + E
Sbjct: 253 KVRD-GTLLEE 262

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328709419|ref|XP_001950272.2| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like [Acyrthosiphon pisum]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/269 (57%), Positives = 199/269 (73%), Gaps = 32/269 (11%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC +HNPQWASV+YGIWICL CSGKHRGLGVHLSFVRSI+MD WKD+ELEKMKVGGN
Sbjct: 25  KCFECGSHNPQWASVSYGIWICLMCSGKHRGLGVHLSFVRSITMDSWKDLELEKMKVGGN 84

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV-------------SSSYMFNTFTTK 107
           + A +F  +QPDW D+MTI+QKYNTKAAALYRDK+             SS+  +N    K
Sbjct: 85  RNAKEFFKSQPDWSDSMTIEQKYNTKAAALYRDKILNLAKGEQWSPTTSSAKDYNVDHMK 144

Query: 108 -------GIFDFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQEN 160
                    ++F++S     +++Y     GYQ+  G     S + + EKEAFF+RKQ EN
Sbjct: 145 MSGGNQSQKYNFNES-----STNYNELSSGYQNDVG-----SPNIKDEKEAFFARKQYEN 194

Query: 161 LSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASK 220
           +++P ++PP+QGGRY+GFGN+VE  PPRS  SQ+L   AVSS +SGWS+FSSSA+KLAS+
Sbjct: 195 MTKPSNVPPNQGGRYSGFGNTVEQ-PPRS-QSQDLLDSAVSSFSSGWSLFSSSASKLASQ 252

Query: 221 ATENAIKYGGMATQKVTEIGTTVTEKVRD 249
           AT++AIK GG+ATQKVT+I T ++ K+++
Sbjct: 253 ATQSAIKIGGLATQKVTDITTDISSKIKE 281

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191453|gb|EFN74994.1| ADP-ribosylation factor GTPase-activating protein 1 [Camponotus floridanus]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 151/252 (59%), Positives = 189/252 (75%), Gaps = 13/252 (5%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC++HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRS+SMDKWKD+EL KMKVGGN
Sbjct: 573 KCFECSSHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKDVELAKMKVGGN 632

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFN----TFTTKGIFDFSQSG 116
           + A +F  +QPDWDD M+I Q+YNTKAAALYRDK+++         T +T   F+ S   
Sbjct: 633 RNAREFFESQPDWDDFMSISQRYNTKAAALYRDKIATLARGESWSPTSSTAKDFEPSTFT 692

Query: 117 GSTVTSSYQGG-GGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRY 175
            +    SYQ      YQ+      +NS S +++ E+FF+++Q EN +RPD++PPSQGG+Y
Sbjct: 693 ENKQEHSYQNDLSCSYQN------MNSNSLKTQTESFFAKRQNENANRPDNIPPSQGGKY 746

Query: 176 AGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQK 235
            GFG  ++ PPP+S SSQELF  AVSSL +GWS+FSSSA+K+ASKATENAIK GG+ATQK
Sbjct: 747 GGFGYQMD-PPPKS-SSQELFDTAVSSLATGWSIFSSSASKIASKATENAIKIGGLATQK 804

Query: 236 VTEIGTTVTEKV 247
            +    T+ E V
Sbjct: 805 ASVRDGTLLEDV 816

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295880|ref|XP_316505.3| AGAP006462-PA [Anopheles gambiae str. PEST] gi|157016244|gb|EAA44238.3| AGAP006462-PA [Anopheles gambiae str. PEST]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 145/289 (50%), Positives = 185/289 (64%), Gaps = 48/289 (16%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC  HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRS+SMDKWKDIELEKMKVGGN
Sbjct: 21  KCFECGTHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKDIELEKMKVGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIF---------- 110
           + A +FL+AQ DWD+TM IQ+KY+T+AAALYRD++S+      +   G            
Sbjct: 81  RKAREFLDAQDDWDETMPIQRKYSTRAAALYRDRISTLAQGQPWDESGALARVNGSGGYA 140

Query: 111 --------------------------DFSQSGGSTVTSSYQGGGGGYQSGGGGGMVNSAS 144
                                          G      +Y   GG YQ         +  
Sbjct: 141 ASGSSGGSTGSMTHSRSSGSMGGGSGAGGNGGYQNGGDNYYQDGGSYQ------QYQTPE 194

Query: 145 FQSEKEAFFSRKQQENLSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLT 204
           F+++KE FFSRKQ+EN +RP++LPP+QGG+YAGFG +++ PPPRS  S ELF    SSL 
Sbjct: 195 FKAQKEDFFSRKQEENAARPENLPPNQGGKYAGFGYTMD-PPPRS-QSHELFDTVQSSLA 252

Query: 205 SGWSMFSSSATKLASKATENAIKYGGMATQKVTEIGTTVTEKVRDWDFM 253
           +GW++FS    K+A+ A ENA+KYG +A+QKV E+ +TV+EKV++   +
Sbjct: 253 TGWNVFS----KVANVAKENALKYGSIASQKVVEVSSTVSEKVKEGSLL 297

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718272|ref|XP_003397595.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like [Bombus terrestris]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/262 (60%), Positives = 188/262 (71%), Gaps = 19/262 (7%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC  HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKD ELEKM++GGN
Sbjct: 21  KCFECGTHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDSELEKMRIGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTF--TTKGIFDFSQSGGS 118
           K A +F  +QPDW+D M+I QKYNTKAAALYRDKV++     ++  TT    DF     S
Sbjct: 81  KNAREFFESQPDWNDNMSITQKYNTKAAALYRDKVATLARGESWNPTTSTAKDFQ----S 136

Query: 119 TVTSSYQGGGGGYQSGGGGGM--VNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYA 176
           ++ S  Q     YQS         NS S +S+ EAFF+RKQ EN +RPD++PPSQGG+Y 
Sbjct: 137 SMCSENQQEYSSYQSDTSNSYQNFNSNSCKSQTEAFFARKQNENANRPDNIPPSQGGKYG 196

Query: 177 GFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKV 236
           GFG  + +PPPRS SSQE F  AVSSL SGWS+ SSSA+K+ASKATENAI+ G +A QKV
Sbjct: 197 GFGYQM-NPPPRS-SSQEFFDSAVSSLASGWSILSSSASKIASKATENAIRTGELAIQKV 254

Query: 237 ------TEIGT---TVTEKVRD 249
                  E+GT   ++  KV D
Sbjct: 255 RDGTFWEEVGTQANSIAAKVGD 276

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781190|ref|XP_394952.4| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like isoform 2 [Apis mellifera]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/251 (60%), Positives = 184/251 (73%), Gaps = 16/251 (6%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC  HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKD+ELEKMKVGGN
Sbjct: 21  KCFECGTHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDLELEKMKVGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTF--TTKGIFDFSQSGGS 118
           K A +F   QPDW+D+M+I QKYNTKAAALYRDK+++      +  TT    DF     S
Sbjct: 81  KNAREFFELQPDWNDSMSITQKYNTKAAALYRDKIATLARGENWSPTTSTAKDFQ----S 136

Query: 119 TVTSSYQGGGGGYQSGGGGGM--VNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYA 176
           ++ S  Q     YQS         NS +++S+ EAFF++KQ EN +RPD++PP+QGG+Y 
Sbjct: 137 SIYSENQQDYSSYQSDLSNSYQNFNSNNYKSQTEAFFTKKQNENANRPDNIPPNQGGKYG 196

Query: 177 GFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKV 236
           GFG  + +PPP+S SSQE F  AVSSL SGWS+ SSSA+K+ASKATENAI+ G +A QKV
Sbjct: 197 GFGYQM-NPPPKS-SSQEFFDNAVSSLASGWSILSSSASKIASKATENAIRTGELAIQKV 254

Query: 237 ------TEIGT 241
                  E+GT
Sbjct: 255 RDGTFWEEVGT 265

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401771|ref|XP_003486257.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 1-like [Bombus impatiens]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/262 (60%), Positives = 188/262 (71%), Gaps = 19/262 (7%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC  HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKD ELEKM++GGN
Sbjct: 21  KCFECGTHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDSELEKMRIGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTF--TTKGIFDFSQSGGS 118
           K A +F  +QPDW+D M+I QKYNTKAAALYRDK+++     ++  TT    DF     S
Sbjct: 81  KNAREFFESQPDWNDNMSITQKYNTKAAALYRDKIATLARGESWNPTTSTAKDFQ----S 136

Query: 119 TVTSSYQGGGGGYQSGGGGGM--VNSASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYA 176
           ++ S  Q     YQS         NS S +S+ EAFF+RKQ EN +RPD++PPSQGG+Y 
Sbjct: 137 SMCSENQQDYSSYQSDTLNSYQNFNSNSCKSQTEAFFARKQNENANRPDNIPPSQGGKYG 196

Query: 177 GFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKV 236
           GFG  + +PPPRS SSQE F  AVSSL SGWS+ SSSA+K+ASKATENAI+ G +A QKV
Sbjct: 197 GFGYQM-NPPPRS-SSQEFFDSAVSSLASGWSILSSSASKIASKATENAIRTGELAIQKV 254

Query: 237 ------TEIGT---TVTEKVRD 249
                  E+GT   ++  KV D
Sbjct: 255 RDGTFWEEVGTQANSIAAKVGD 276

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028105|ref|XP_003697751.1| PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor GTPase-activating protein 1-like [Apis florea]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/251 (60%), Positives = 182/251 (72%), Gaps = 16/251 (6%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC  HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKD+ELEKM+VGGN
Sbjct: 21  KCFECGTHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDLELEKMRVGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTF--TTKGIFDFSQSGGS 118
           K A +F   QPDW+D M+I QKYNTKAAALYRDK+++      +  TT    DF     S
Sbjct: 81  KNAREFFELQPDWNDNMSITQKYNTKAAALYRDKIATLARGENWSPTTSTAKDFQ----S 136

Query: 119 TVTSSYQGGGGGYQSGGGGGMVN--SASFQSEKEAFFSRKQQENLSRPDHLPPSQGGRYA 176
           ++ S  Q     YQS       N  S +++S+ EAFF +KQ EN +RPD++PP+QGG+Y 
Sbjct: 137 SIYSENQQDYSSYQSDLSNSYQNFSSNNYKSQAEAFFCKKQNENANRPDNIPPNQGGKYG 196

Query: 177 GFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKYGGMATQKV 236
           GFG  + +PPP+S+ SQE F  AVSSL SGWS+ SSSA+K+ASKATENAI+ G +A QKV
Sbjct: 197 GFGYQM-NPPPKSL-SQEFFDNAVSSLASGWSILSSSASKIASKATENAIRTGELAIQKV 254

Query: 237 ------TEIGT 241
                  E+GT
Sbjct: 255 RDGTFWEEVGT 265

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026122|gb|EGI66270.1| ADP-ribosylation factor GTPase-activating protein 1 [Acromyrmex echinatior]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/259 (57%), Positives = 185/259 (71%), Gaps = 27/259 (10%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCFEC +HNPQW SVTYGIWICLECSGKHRGLGVHLSFVRS+SMDKWKD+ELEKMKVGGN
Sbjct: 21  KCFECGSHNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKDVELEKMKVGGN 80

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVS----------SSYMFNTFTTKGIF 110
           + A +F   Q DWD++M+I Q+YNTKAAALYRDK++          SS     F      
Sbjct: 81  RNAREFFENQSDWDESMSISQRYNTKAAALYRDKIATLARGEPWSPSSSTMKEFHPSTFI 140

Query: 111 DFSQ--SGGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQENLSRPDHLP 168
              Q  S  + ++SSYQ              ++S + + + E+FF++KQ EN +RPD++P
Sbjct: 141 KNKQEYSYQNDLSSSYQN-------------MDSNNLKIQTESFFAKKQNENANRPDNIP 187

Query: 169 PSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKY 228
           P+QGG+Y GFG  ++ PPP+S SSQELF  AVSSL SGWS+FSSSA+K+ASKATENAIK 
Sbjct: 188 PNQGGKYGGFGYQMD-PPPKS-SSQELFDTAVSSLASGWSIFSSSASKIASKATENAIKI 245

Query: 229 GGMATQKVTEIGTTVTEKV 247
           GG+ATQK +    T+ E V
Sbjct: 246 GGLATQKASVRDGTLLEDV 264

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
FB|FBgn0020655	468	ArfGAP1 "ADP-ribosylation fact	0.370	0.207	0.742	2.6e-59
UNIPROTKB|E5RHC5	261	ARFGAP1 "ADP-ribosylation fact	0.358	0.360	0.734	3.3e-49
UNIPROTKB|Q8N6T3	406	ARFGAP1 "ADP-ribosylation fact	0.358	0.231	0.734	3.3e-49
UNIPROTKB|E2RHR0	417	ARFGAP1 "Uncharacterized prote	0.366	0.230	0.729	4.2e-49
UNIPROTKB|F1N8K3	419	ARFGAP1 "Uncharacterized prote	0.366	0.229	0.729	6.8e-49
RGD|708452	415	Arfgap1 "ADP-ribosylation fact	0.366	0.231	0.708	1.2e-47
UNIPROTKB|F1MI54	417	ARFGAP1 "Uncharacterized prote	0.366	0.230	0.697	1.6e-47
MGI|MGI:2183559	414	Arfgap1 "ADP-ribosylation fact	0.366	0.231	0.697	3.3e-47
ZFIN|ZDB-GENE-041114-130	394	arfgap1 "ADP-ribosylation fact	0.366	0.243	0.729	3.7e-46
UNIPROTKB|Q3S4A4	425	Arfgap1 "ADP-ribosylation fact	0.366	0.225	0.708	3.3e-45

FB|FBgn0020655 ArfGAP1 "ADP-ribosylation factor GTPase activating protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 72/97 (74%), Positives = 83/97 (85%)

Query:     1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
             KCFEC  HNPQW SVTYGIWICLECSGKHR LGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct:    21 KCFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFVRSVTMDKWKDIELEKMKAGGN 80

Query:    61 KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
             + A +FL  Q DW++   I Q+YN+KAAALYRDK+++
Sbjct:    81 RNAREFLEDQEDWNERAPITQRYNSKAAALYRDKIAT 117

GO:0008060 "ARF GTPase activator activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005525 "GTP binding" evidence=NAS

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IGI

GO:0005795 "Golgi stack" evidence=IGI

UNIPROTKB|E5RHC5 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 69/94 (73%), Positives = 81/94 (86%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
                +FL +Q D+D   ++Q+KYN++AAAL+RDKV
Sbjct:    82 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 115

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|Q8N6T3 ARFGAP1 "ADP-ribosylation factor GTPase-activating protein 1" [Homo sapiens (taxid:9606)]

 Score = 400 (145.9 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 69/94 (73%), Positives = 81/94 (86%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
                +FL +Q D+D   ++Q+KYN++AAAL+RDKV
Sbjct:    82 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 115

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0030660 "Golgi-associated vesicle membrane" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043547 "positive regulation of GTPase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RHR0 ARFGAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 405 (147.6 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSGKHRGLGVHLSFVRS++MDKWKD+ELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVTMDKWKDVELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                +FL +Q D+D   ++Q KYN+KAAAL+RDKV++
Sbjct:    82 KFREFLESQEDYDPCWSLQDKYNSKAAALFRDKVAT 117

GO:0045202 "synapse" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|F1N8K3 ARFGAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 404 (147.3 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 70/96 (72%), Positives = 83/96 (86%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSGKHRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNS 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                +FL +Q D+D   ++Q+KYN+KAAAL+RD+V++
Sbjct:    82 KFREFLESQDDYDPCWSMQEKYNSKAAALFRDQVAT 117

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

RGD|708452 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 396 (144.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 68/96 (70%), Positives = 83/96 (86%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                +FL AQ D++ + ++Q KY+++AAAL+RDKV++
Sbjct:    82 KFREFLEAQDDYEPSWSLQDKYSSRAAALFRDKVAT 117

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043547 "positive regulation of GTPase activity" evidence=ISO

GO:0045202 "synapse" evidence=IEA;ISO

UNIPROTKB|F1MI54 ARFGAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 396 (144.5 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 67/96 (69%), Positives = 83/96 (86%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSGKHRGLGVHLSFVRS++MDKWKD+ELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVTMDKWKDVELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                +FL +Q D+D   ++Q+KY+++AAAL+RD+V++
Sbjct:    82 RFREFLESQEDYDPCWSLQEKYSSRAAALFRDRVAA 117

GO:0045202 "synapse" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

MGI|MGI:2183559 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Mus musculus (taxid:10090)]

 Score = 392 (143.0 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 67/96 (69%), Positives = 82/96 (85%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                +FL  Q D++ + ++Q KY+++AAAL+RDKV++
Sbjct:    82 KFREFLETQDDYEPSWSLQDKYSSRAAALFRDKVAT 117

GO:0000139 "Golgi membrane" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-041114-130 arfgap1 "ADP-ribosylation factor GTPase activating protein 1" [Danio rerio (taxid:7955)]

 Score = 403 (146.9 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 70/96 (72%), Positives = 82/96 (85%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSGKHRGLGVHLSFVRS+SMDKWKD+ELEKMK GGN+
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGKHRGLGVHLSFVRSVSMDKWKDLELEKMKAGGNR 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                 FL  Q D+D   ++Q+KYN++AAAL+RDKV++
Sbjct:    82 KFRMFLELQDDYDPNWSLQEKYNSRAAALFRDKVAT 117

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3S4A4 Arfgap1 "ADP-ribosylation factor GTPase activating protein 1 heart isoform" [Rattus norvegicus (taxid:10116)]

 Score = 396 (144.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 68/96 (70%), Positives = 83/96 (86%)

Query:     2 CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
             CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct:    22 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 81

Query:    62 AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
                +FL AQ D++ + ++Q KY+++AAAL+RDKV++
Sbjct:    82 KFREFLEAQDDYEPSWSLQDKYSSRAAALFRDKVAT 117

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0045202 "synapse" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94601	YC8E_SCHPO	No assigned EC number	0.3544	0.8969	0.7320	yes	N/A
P35197	GCS1_YEAST	No assigned EC number	0.3765	0.8625	0.6420	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	262
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	7e-44
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	1e-39
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	6e-32
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	1e-24
PLN03119	648	PLN03119, PLN03119, putative ADP-ribosylation fact	8e-07
PLN03131	705	PLN03131, PLN03131, hypothetical protein; Provisio	2e-06

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score =  144 bits (365), Expect = 7e-44
 Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            C +C A NP WAS+  GI+IC+ CSG HR LGVH+S VRS+++DKW   +LE MK GGN
Sbjct: 15  VCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWTPEQLEFMKAGGN 74

Query: 61  KAAHDFLNA---QPDWDDTMTIQQKYNTKAAALYRDK 94
           K A++F  A    P    + + ++K  +   A Y +K
Sbjct: 75  KRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEK 111

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score =  133 bits (336), Expect = 1e-39
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 4/98 (4%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C A NP WASV  G+++C+ECSG HR LGVH+S VRS+++D W + EL  ++ GGN
Sbjct: 12  KCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGN 71

Query: 61  KAAHDFLNAQPD----WDDTMTIQQKYNTKAAALYRDK 94
           + A+    +  D           QQKY +  AA Y +K
Sbjct: 72  ENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEK 109

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score =  119 bits (299), Expect = 6e-32
 Identities = 63/235 (26%), Positives = 100/235 (42%), Gaps = 22/235 (9%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KC +C A NP WASV  G+++C++C+G HR LGVH+S V+S+++D W + EL +M+VGGN
Sbjct: 22  KCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGN 81

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTV 120
             A+ F          + I+ KY++  A  Y  K    Y       K I D S     + 
Sbjct: 82  SNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRK---KYEL----KKFIDDSSSPSDFSS 134

Query: 121 TSSYQGGG----GGYQSGGGGGMVNSAS---FQSEKEAFFSRKQQENLSRPDHLPPSQGG 173
            S+                     +SAS        +       Q   S+P  L  ++  
Sbjct: 135 FSASSTRTVDSVDDRLDSESQSRSSSASLGNSNRPDDELNVESFQSTGSKPRSLTSTKSN 194

Query: 174 RYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLASKATENAIKY 228
           +     + + +      S+ E        + SG    S +  K ++KATE+    
Sbjct: 195 KDNLLNSELLTLNSLLSSNSE--------VGSGTKSRSDAQEKSSTKATESVKPG 241

Length = 319

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score =  100 bits (250), Expect = 1e-24
 Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CF+CNA NP WASVTYGI++C++CS  HR LGVH+SFVRS ++D W   +L+ M  GGN 
Sbjct: 25  CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNN 84

Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR 92
            A  F   Q  W D    + KY ++AA LY+
Sbjct: 85  RAQVFFK-QYGWSDGGKTEAKYTSRAADLYK 114

Length = 395

>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

 Score = 49.5 bits (117), Expect = 8e-07
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 1  KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
          +C  CN+  PQ+   T+  ++C+ CSG HR        V+S+SM K+   E+E ++ GGN
Sbjct: 25 RCINCNSLGPQYVCTTFWTFVCMACSGIHREF---THRVKSVSMSKFTSKEVEVLQNGGN 81

Query: 61 KAAHD 65
          + A +
Sbjct: 82 QRARE 86

Length = 648

>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 1  KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
          +C  CN+  PQ+    +  +IC+ CSG HR        V+S+SM K+   ++E ++ GGN
Sbjct: 25 RCINCNSLGPQFVCTNFWTFICMTCSGIHREF---THRVKSVSMSKFTSQDVEALQNGGN 81

Query: 61 KAAHDFLNAQPDWD 74
          + A +      DWD
Sbjct: 82 QRAREIY--LKDWD 93

Length = 705

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG0704|consensus	386		100.0
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	100.0
KOG0706|consensus	454		100.0
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	99.98
KOG0703|consensus	287		99.97
PLN03131	705	hypothetical protein; Provisional	99.94
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	99.94
KOG0705|consensus	749		99.82
KOG0521|consensus	785		99.77
KOG0818|consensus	669		99.71
KOG1117|consensus	1186		99.57
KOG0702|consensus	524		99.19
KOG0521|consensus	785		91.88

>KOG0704|consensus

Probab=100.00  E-value=4.7e-70  Score=506.31  Aligned_cols=210  Identities=49%  Similarity=0.855  Sum_probs=174.7

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +||||+++|||||||+|||||||+|+|+||+||||||||||||||+|++.||++|++|||.++++||+.++++++.++|+
T Consensus        21 ~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~eFL~s~~~~~e~~~i~  100 (386)
T KOG0704|consen   21 KCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFREFLSSQGIYKETWPIR  100 (386)
T ss_pred             ceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHHHHHhhCccccccccHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCCCCCCCC-CCCcccccCCCCCCCCCCCCCCCCCCCcchhhhhHHHHhhhhhc
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQS-GGSTVTSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFSRKQQE  159 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~Fa~~g~~  159 (262)
                      +||++++|+.||+||.++++||+|..++....+.+ ..-++.....  ..+....  ....+....+..+|.||++++.+
T Consensus       101 eKYns~aAa~yRdki~~laegr~w~d~~~~k~~~p~~syt~a~~~~--~~ss~~~--~~~sq~~~~~~~ke~~fa~~~~~  176 (386)
T KOG0704|consen  101 EKYNSRAAALYRDKIAALAEGREWNDPPYLKEDNPAQSYTSAAQLG--SKSSETI--YTISQLSNSAAGKESYFAKRLSE  176 (386)
T ss_pred             HhhccHHHHHHHHHHHHHhcCCcccccccccccCcccccccCCCcC--CCcCCcc--cccccchhhhcchhHHHHHhccc
Confidence            99999999999999999999999977665543321 1111100000  0000000  01122334567788999999999


Q ss_pred             ccCCCCCCCCCCCCccccccCCCCCCCCCCCCccccccchhhhhhhhhhHHHHHHHHHHH
Q psy62           160 NLSRPDHLPPSQGGRYAGFGNSVESPPPRSVSSQELFGGAVSSLTSGWSMFSSSATKLAS  219 (262)
Q Consensus       160 N~sRp~~lpPsQggkY~GFGnt~~~p~~~~~~~~~~~~~~~~~l~~Gw~~fs~~~~k~a~  219 (262)
                      |.+||++|||+|||||+|||+|+. |||+++ .+|   |+|++|+.||++||.+|+++|+
T Consensus       177 n~srpd~lppsQggkY~GFGst~~-~ppqs~-~~~---~~~s~ls~Gws~~s~~as~~a~  231 (386)
T KOG0704|consen  177 NQSRPDGLPPSQGGKYQGFGSTNA-PPPQSN-SQD---DAMSVLSSGWSRLSTGASSAAS  231 (386)
T ss_pred             ccCCCCCCCcccCCcccccCCCCC-CCCccc-ccc---chhhhhccccccccchhhhhhh
Confidence            999999999999999999999988 666654 333   8999999999999999999887

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-37  Score=291.29  Aligned_cols=104  Identities=39%  Similarity=0.753  Sum_probs=97.3

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|||||+++|+|+|++||||||++||||||+|||||||||||+||.|+++||++|+.+||.++++||+.+......++|+
T Consensus        22 ~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~gGN~~a~~~~e~~~~~~~~~~~k  101 (319)
T COG5347          22 KCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGNSNANRFYEKNLLDQLLLPIK  101 (319)
T ss_pred             ccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHHhcchhhhhHhccCCCcccccccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999986643458999


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCc
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTF  104 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~  104 (262)
                      +||++..++.|+.++..++....|
T Consensus       102 ~~yd~~v~~~y~~~ky~~~~~~~~  125 (319)
T COG5347         102 AKYDSSVAKKYIRKKYELKKFIDD  125 (319)
T ss_pred             cccCHHHHHHHHHHHHHhhhcccc
Confidence            999999999999999888777776

>KOG0706|consensus

Probab=100.00  E-value=1.3e-34  Score=276.51  Aligned_cols=99  Identities=48%  Similarity=0.927  Sum_probs=93.1

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|||||+++|.|+||+||||||++|+++||.||||||||||++||.|+..||++|+.|||.+|+.||..|...  ...++
T Consensus        25 vCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M~~GGN~nA~~FFkqhg~~--t~d~~  102 (454)
T KOG0706|consen   25 VCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRMQVGGNANARVFFKQHGCV--TLDAN  102 (454)
T ss_pred             eecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHhhhcCchhHHHHHHHcCCc--chhhh
Confidence            5999999999999999999999999999999999999999999999999999999999999999999998543  34899


Q ss_pred             hhhccHHHHHHHHHHhcccCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMF  101 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~g  101 (262)
                      .||+++++.+||++|..++.+
T Consensus       103 aKY~SraA~~Yr~kl~~lv~k  123 (454)
T KOG0706|consen  103 AKYNSRAAKLYREKLKKLVQK  123 (454)
T ss_pred             hhhccHHHHHHHHHHHHHHHH
Confidence            999999999999999987654

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=100.00  E-value=9.5e-34  Score=265.46  Aligned_cols=100  Identities=46%  Similarity=0.936  Sum_probs=95.0

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||.++++||+.+ ++.....|+
T Consensus        24 ~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk~GGN~rA~~fF~qh-G~~~~~~~~  102 (395)
T PLN03114         24 ICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQY-GWSDGGKTE  102 (395)
T ss_pred             cCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHHHhcCHHHHHHHHHc-CCCCCCCcc
Confidence            5999999999999999999999999999999999999999999999999999999999999999999986 455567899


Q ss_pred             hhhccHHHHHHHHHHhcccCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMF  101 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~g  101 (262)
                      +||+++++++||++|.+++++
T Consensus       103 ~KY~S~aA~~Yre~L~keVa~  123 (395)
T PLN03114        103 AKYTSRAADLYKQILAKEVAK  123 (395)
T ss_pred             cccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998875

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=1.4e-33  Score=227.53  Aligned_cols=105  Identities=37%  Similarity=0.736  Sum_probs=88.9

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||+|+++||++|+.+||+++|+||+++.......+  
T Consensus         5 ~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~--   82 (112)
T smart00105        5 KCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGNENANSIWESNLDDFSLKP--   82 (112)
T ss_pred             cccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHHHhhhHHHHHHHHhhCCccccCC--
Confidence            599999999999999999999999999999999999999999999999999999999999999999999754221111  


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI  109 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~  109 (262)
                        -.......|+++|+++|+.++|+.+..
T Consensus        83 --~~~~~~~~~~~fI~~KY~~k~f~~~~~  109 (112)
T smart00105       83 --PDSDDQQKYESFIAAKYEEKLFVPPES  109 (112)
T ss_pred             --CCCchHHHHHHHHHHHHHhhhcccccc
Confidence              111134567888888888888877654

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=99.98  E-value=2.2e-33  Score=227.61  Aligned_cols=102  Identities=39%  Similarity=0.756  Sum_probs=77.7

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||+|+++||++|+.+||.++|++|+++...  ...+ 
T Consensus        15 ~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~~GN~~~n~~~e~~~~~--~~~~-   91 (116)
T PF01412_consen   15 VCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMREGGNKRANSIWEANSPP--PKKP-   91 (116)
T ss_dssp             B-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHHSHHHHHHHHHTTTSTT--TTTH-
T ss_pred             cCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHHHChHHHHHHHHcCCCC--CCCC-
Confidence            5999999999999999999999999999999999999999999999999999999999999999999998211  1111 


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTK  107 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~  107 (262)
                        -.......|+++|+++|+.+.|..+
T Consensus        92 --~~~~~~~~~~~fI~~KY~~k~f~~~  116 (116)
T PF01412_consen   92 --PPSSDQEKREQFIRAKYVEKAFISK  116 (116)
T ss_dssp             --CTTSHHHHHHHHHHHHHTTHTTS-C
T ss_pred             --CCCCcHHHHHHHHHHHHHhhhhccC
Confidence              1123355788899999999999753

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>KOG0703|consensus

Probab=99.97  E-value=5e-32  Score=248.62  Aligned_cols=70  Identities=43%  Similarity=0.935  Sum_probs=69.0

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhC
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQ   70 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~   70 (262)
                      .|+|||++.|.|||+|+|||||+.|+||||.||||||+||||+||.|++|||+.|...||.++|+|||++
T Consensus        27 ~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN~~an~~~ea~   96 (287)
T KOG0703|consen   27 VCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGNAKANSYYEAK   96 (287)
T ss_pred             cccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHHcchhhhhhcccc
Confidence            5999999999999999999999999999999999999999999999999999999999999999999997

>PLN03131 hypothetical protein; Provisional

Probab=99.94  E-value=1e-27  Score=236.63  Aligned_cols=105  Identities=26%  Similarity=0.527  Sum_probs=88.8

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+||++++|+|||++||||||++|+||||.|| |  |||||+||+|+++||+.|+.+||+++|+||+++.+.. ...+.
T Consensus        25 ~CADCga~~P~WASiNlGIFICi~CSGIHRsLg-h--RVKSVTLD~WtdeEV~~Mk~gGN~~AN~iyeanwd~~-r~~lP  100 (705)
T PLN03131         25 RCINCNSLGPQFVCTNFWTFICMTCSGIHREFT-H--RVKSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQ-RQRLP  100 (705)
T ss_pred             ccccCCCCCCCeeEeccceEEchhchhhhcccC-c--ccccccCCCCCHHHHHHHHHhccHHHHHHHHhhcccc-cCCCC
Confidence            599999999999999999999999999999998 4  9999999999999999999999999999999875422 11222


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCCCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFDF  112 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~~  112 (262)
                      ...   .....+++|+.+|+.|+|..+.....
T Consensus       101 ~~s---d~ekrr~FIR~KYVeKRFa~~~s~d~  129 (705)
T PLN03131        101 DNS---KVDKIREFIKDIYVDKKYAGGKTHDK  129 (705)
T ss_pred             CCc---cHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence            222   24457899999999999998875544

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=99.94  E-value=3.7e-27  Score=231.05  Aligned_cols=107  Identities=28%  Similarity=0.550  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+.+|+|||++||||||++|+||||.|| |  +||||+||+|+++||+.|+.+||+++|+||+++.+... ..+.
T Consensus        25 ~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG-h--RVKSLSLDkWT~EEVe~Mk~gGN~~AN~iyeanw~~~~-~~~P  100 (648)
T PLN03119         25 RCINCNSLGPQYVCTTFWTFVCMACSGIHREFT-H--RVKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQR-QRLP  100 (648)
T ss_pred             ccccCCCCCCCceeeccceEEeccchhhhccCC-c--eeeccccCCCCHHHHHHHHHhchHHHHHHHHhhccccc-CCCC
Confidence            599999999999999999999999999999998 4  99999999999999999999999999999999754221 1111


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCCCCCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQ  114 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~~~~  114 (262)
                      ...+   .+..+++|+.+|+.|+|..+...+..+
T Consensus       101 ~~sD---~e~lr~FIR~KYVeKRF~~~~~~d~p~  131 (648)
T PLN03119        101 ENSN---AERVREFIKNVYVQKKYAGANDADKPS  131 (648)
T ss_pred             CCcc---HHHHHHHHHHHHhhhhccCcCCCCCCc
Confidence            1122   345689999999999999887666544

>KOG0705|consensus

Probab=99.82  E-value=4.2e-21  Score=188.74  Aligned_cols=69  Identities=43%  Similarity=0.885  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNA   69 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~   69 (262)
                      .|+||++++|.|||+|+|+.||++|+|+||.||.|+|+||||.+|.|..|.+..|..+||+.+|.+||.
T Consensus       515 ~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~aiGN~~AN~vWE~  583 (749)
T KOG0705|consen  515 HCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAIGNDLANSVWEG  583 (749)
T ss_pred             eeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHhhhhHHHHHhhh
Confidence            599999999999999999999999999999999999999999999999999999999999999999997

>KOG0521|consensus

Probab=99.77  E-value=6.9e-20  Score=188.43  Aligned_cols=104  Identities=33%  Similarity=0.589  Sum_probs=84.7

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCC---CCc
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWD---DTM   77 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~---~~~   77 (262)
                      +|+|||++.|.|+|+|+||.+|++|+|+||.||||||+|||++||.|.++.+..|+.+||..+|.+||++....   ...
T Consensus       428 ~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~~~~~~  507 (785)
T KOG0521|consen  428 QCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNLGNKYVNEIYEALLPSYDSSKPT  507 (785)
T ss_pred             hhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHhCcchhhhhhhcccccccccCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999863211   111


Q ss_pred             hhhhhhccHHHHHHHHHHhcccCCCCcccCCCC
Q psy62            78 TIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIF  110 (262)
Q Consensus        78 ~I~~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~  110 (262)
                      ....      ...-+.+|+++|..+.|....+.
T Consensus       508 ~~~~------~~~r~~~i~~kyve~~F~~k~~~  534 (785)
T KOG0521|consen  508 ASSS------RQAREAWIKAKYVERRFSVKEPQ  534 (785)
T ss_pred             Cccc------hhhhhHhhhcccceeeEeecccc
Confidence            1111      22345567777777777665543

>KOG0818|consensus

Probab=99.71  E-value=1.3e-18  Score=169.19  Aligned_cols=70  Identities=33%  Similarity=0.694  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhC
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQ   70 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~   70 (262)
                      .|.|||+++|.||||+-|+|||.+|..+||.||.|||.||+|....|.++.|++.....|..+|.+||+.
T Consensus        10 vC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tLn~~gaNsIWEh~   79 (669)
T KOG0818|consen   10 VCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETLNNNGANSIWEHS   79 (669)
T ss_pred             hhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHHHhcCcchhhhhh
Confidence            5999999999999999999999999999999999999999999999999999999999999999999984

>KOG1117|consensus

Probab=99.57  E-value=6e-16  Score=157.60  Aligned_cols=71  Identities=38%  Similarity=0.733  Sum_probs=68.9

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCC--CCHHHHHhhhcCChHHHHHHHhhCC
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDK--WKDIELEKMKVGGNKAAHDFLNAQP   71 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~--W~~~el~~m~~gGN~~~n~f~e~~~   71 (262)
                      .|+|||++.|.|||+|+++.||-.|+|-||+||.-+|+|||++||.  |+.+-|+++-..||.++|+||..+.
T Consensus       300 ~cadC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl  372 (1186)
T KOG1117|consen  300 ECADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNL  372 (1186)
T ss_pred             cccccCCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCC
Confidence            4999999999999999999999999999999999999999999998  9999999999999999999999864

>KOG0702|consensus

Probab=99.19  E-value=2e-11  Score=119.18  Aligned_cols=106  Identities=21%  Similarity=0.364  Sum_probs=88.8

Q ss_pred             CCCCCCCCCC-CeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchh
Q psy62             1 KCFECNAHNP-QWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTI   79 (262)
Q Consensus         1 ~C~DCga~~P-~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I   79 (262)
                      ||++|....+ .|++.+-|.|+|+.|+|..|+|.. -.+||||+|.+|++.|+..++.+||+..+++|-.-.|...+...
T Consensus        27 rC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmttft~qevs~lQshgNq~~k~i~fkl~D~q~S~vP  105 (524)
T KOG0702|consen   27 RCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMTTFTDQEVSFLQSHGNQVCKEIWFKLFDFQRSNVP  105 (524)
T ss_pred             ceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeeeeccccchHHHhhcchhhhhhhhhcchhhhhccCC
Confidence            7999999888 999999999999999999999964 24999999999999999999999999999999976554433322


Q ss_pred             hhhhccHHHHHHHHHHhcccCCCCcccCCCCC
Q psy62            80 QQKYNTKAAALYRDKVSSSYMFNTFTTKGIFD  111 (262)
Q Consensus        80 ~~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~  111 (262)
                      -.+|    ...-|++++.+|++++|+.+.-..
T Consensus       106 D~rn----~~~~kef~q~~y~~kr~~v~~n~~  133 (524)
T KOG0702|consen  106 DSRN----PQKVKEFQQEKYVKKRYYVPKNQM  133 (524)
T ss_pred             Cccc----chhhHHHHhhhhccceeecCcccc
Confidence            2223    455699999999999999887543

>KOG0521|consensus

Probab=91.88  E-value=0.031  Score=58.99  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             CCCCCCC-CCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHh
Q psy62             1 KCFECNA-HNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLN   68 (262)
Q Consensus         1 ~C~DCga-~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e   68 (262)
                      .|++|++ ..-.|+++++.+-+|..|+++|+.++.|++..+++.+|...+  |.....-|+...+.-+.
T Consensus       632 ~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~  698 (785)
T KOG0521|consen  632 ECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATA  698 (785)
T ss_pred             cchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhh
Confidence            3788887 457899999999999999999999999999999999998888  56565556555554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-40
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		1e-39
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		5e-23
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		2e-21
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		3e-19
2owa_A	138	Crystal Structure Of Putative Gtpase Activating Pro		9e-17
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		3e-12
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		4e-12
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-11
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-11
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-11
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		4e-11
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		4e-11
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		9e-10
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-08
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		3e-08
2d9l_A	134	Solution Structure Of The Arfgap Domain Of Human Ri		3e-07
2olm_A	140	Arfgap Domain Of Hiv-1 Rev Binding Protein Length =		4e-07

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct: 40  CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99
Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
              +FL +Q D+D   ++Q+KYN++AAAL+RDKV
Sbjct: 100 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 133

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN 
Sbjct: 41  CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100
Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
              +FL +Q D+D   ++Q+KYN++AAAL+RDKV
Sbjct: 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKV 134

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGGN 60
           CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS  +D  W   +L  M+VGGN
Sbjct: 32  CFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGN 91
Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
            +A  F +       T     KYN++AA LYR+K+ S
Sbjct: 92  ASASSFFHQHG--CSTNDTNAKYNSRAAQLYREKIKS 126

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 5/96 (5%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGGN 60
           CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS  +D  W   +L  M+VGGN
Sbjct: 40  CFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99
Query: 61  KAAHDFLNAQP-DWDDTMTIQQKYNTKAAALYRDKV 95
             A  F        +D  T   KYN++AA +YR+K+
Sbjct: 100 ANATAFFRQHGCTANDANT---KYNSRAAQMYREKI 132

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C   NP W SV +GI++C+ CSG HR LGVH+S VRSI MD + D +L+ +  GGN
Sbjct: 24  KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83
Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNT 103
           K    +L      D     ++KY TKAA  YR K+  S + N 
Sbjct: 84  KKCQTYLENYGISD--FIPERKYRTKAADHYR-KILRSIVHNV 123

>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           CF+C + NP W S+++ ++ICL CS  HR +GVH+SFVRS  +DK+  I+L +M +GGN 
Sbjct: 39  CFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98
Query: 62  AAHDFL 67
            A ++ 
Sbjct: 99  RARNYF 104

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           C +C +  P+WAS   G++IC+ C+G HR LGVH+S V+S+++D+W   +++ M+  GN 
Sbjct: 30  CADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNG 89
Query: 62  AAHDFLNA-------QPDWDDTMT--IQQKYNTK 86
            A+    A       +P  D  +   I+ KY  K
Sbjct: 90  KANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKK 123

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 2  CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
          C +C A  P+WAS   G++IC+ C+G HR LGVH+S V+S+++D+W   +++ M+  GN 
Sbjct: 32 CADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNT 91
Query: 62 AAHDFLNA 69
           A     A
Sbjct: 92 KARLLYEA 99

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKM 55
           +C +C    P+WAS+  G+ +C++CSG HR LGVH S VRS+++D W+  EL K+
Sbjct: 47  QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEP-ELVKL 100

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKM 55
           +C +C    P+WAS+  G+ +C++CSG HR LGVH S VRS+++D W+  EL K+
Sbjct: 47  QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEP-ELVKL 100

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKM 55
           +C +C    P+WAS+  G+ +C++CSG HR LGVH S VRS+++D W+  EL K+
Sbjct: 47  QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEP-ELVKL 100

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1  KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
          +C +C A +P WAS T G++ICL CSG HR +   +S V+S+ +D W++ ++E M   GN
Sbjct: 36 RCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGN 94
Query: 61 KAA 63
           AA
Sbjct: 95 DAA 97

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1  KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
          +C +C A +P WAS T G++ICL CSG HR +   +S V+S+ +D W++ ++E M   GN
Sbjct: 38 RCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGN 96
Query: 61 KAA 63
           AA
Sbjct: 97 DAA 99

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 2   CFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNK 61
           C +C A +P W S   GI  C+ECSG HR LGVH S ++S+++D     EL   K  GN 
Sbjct: 20  CCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNA 79
Query: 62  AAHDFLNAQPDWDDTMTIQQKYNTKAAALYR-DKVSSSYMFNTFTTK 107
             ++ +      +D +    K N  +  + R D +++ YM   +  K
Sbjct: 80  GFNEIMECCLPSEDPV----KPNPGSDMIARKDYITAKYMERRYARK 122

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 1  KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
          +C +C A +P W S   G+  C++CSG HR LGV  S ++S+++D     EL      GN
Sbjct: 25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84
Query: 61 KAAHDFLNAQ 70
           + ++ + AQ
Sbjct: 85 TSFNEVMEAQ 94

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           +C +C A +P W S   G+  C++CSG HR LGV  S ++S+++D     EL      GN
Sbjct: 44  QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103
Query: 61  KAAHDFLNAQ 70
            + ++ + AQ
Sbjct: 104 TSFNEVMEAQ 113

>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C+   P + ++T G ++C  CSG  RGL      V+SISM  +   E+E ++  GN
Sbjct: 22  KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISMTTFTQQEIEFLQKHGN 80
Query: 61  KAAH--------DFLNAQPDWDDTMTI----QQKYNTK 86
           +           D  +A PD+ D   +    Q+KY  K
Sbjct: 81  EVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 118

>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C+   P + ++T G ++C  CSG  RGL      V+SISM  +   E+E ++  GN
Sbjct: 27  KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISMTTFTQQEIEFLQKHGN 85
Query: 61  KAAH--------DFLNAQPDWDDTMTI----QQKYNTK 86
           +           D  +A PD+ D   +    Q+KY  K
Sbjct: 86  EVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-60
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	6e-52
2owa_A	138	Arfgap-like finger domain containing protein; zinc	1e-47
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	1e-46
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	6e-43
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	1e-42
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	1e-35
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	2e-35
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-32
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	1e-32
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-31
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	2e-30
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-29
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-26

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  192 bits (490), Expect = 2e-60
 Identities = 69/99 (69%), Positives = 82/99 (82%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct: 39  VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 98

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSY 99
               +FL +Q D+D   ++Q+KYN++AAAL+RDKV +  
Sbjct: 99  AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALA 137

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score =  165 bits (419), Expect = 6e-52
 Identities = 69/99 (69%), Positives = 82/99 (82%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            CFEC A NPQW SVTYGIWICLECSG+HRGLGVHLSFVRS++MDKWKDIELEKMK GGN
Sbjct: 40  VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSY 99
               +FL +Q D+D   ++Q+KYN++AAAL+RDKV +  
Sbjct: 100 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALA 138

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score =  153 bits (389), Expect = 1e-47
 Identities = 33/97 (34%), Positives = 57/97 (58%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            CF+C + NP W S+++ ++ICL CS  HR +GVH+SFVRS  +DK+  I+L +M +GGN
Sbjct: 38  TCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGN 97

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
             A ++       + +   ++  ++     Y+  + S
Sbjct: 98  GRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDS 134

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score =  152 bits (385), Expect = 1e-46
 Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C   NP W SV +GI++C+ CSG HR LGVH+S VRSI MD + D +L+ +  GGN
Sbjct: 24  KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSSSYMFNTFTTKGIFDFSQSGGSTV 120
           K    +L      D     ++KY TKAA  YR  + S             D  +S  +  
Sbjct: 84  KKCQTYLENYGISD--FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDEGKSLINYG 141

Query: 121 TSSYQGGGGGYQSGGGGGMVNSASFQSEKEAFFS 154
            +                  N   + +E+  F S
Sbjct: 142 RNENVNEN------------NKNQYSNEEPDFIS 163

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score =  142 bits (359), Expect = 6e-43
 Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 3/96 (3%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGG 59
            CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS  +D  W   +L  M+VGG
Sbjct: 39  ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGG 98

Query: 60  NKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKV 95
           N  A  F               KYN++AA +YR+K+
Sbjct: 99  NANATAFFRQHG--CTANDANTKYNSRAAQMYREKI 132

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score =  141 bits (357), Expect = 1e-42
 Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 3/98 (3%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMD-KWKDIELEKMKVGG 59
            CF+C A NP WAS+TYG+++C++CSG HR LGVHLSF+RS  +D  W   +L  M+VGG
Sbjct: 31  VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGG 90

Query: 60  NKAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDKVSS 97
           N +A  F +       T     KYN++AA LYR+K+ S
Sbjct: 91  NASASSFFHQHG--CSTNDTNAKYNSRAAQLYREKIKS 126

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score =  122 bits (309), Expect = 1e-35
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 12/103 (11%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            C +C +  P+WAS   G++IC+ C+G HR LGVH+S V+S+++D+W   +++ M+  GN
Sbjct: 29  FCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGN 88

Query: 61  KAAHDFLNA-------QPDWDDTMT--IQQKYNTKAAALYRDK 94
             A+    A       +P  D  +   I+ KY  K    Y D+
Sbjct: 89  GKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKK---KYMDR 128

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  122 bits (308), Expect = 2e-35
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 12/107 (11%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            C +C A  P+WAS   G++IC+ C+G HR LGVH+S V+S+++D+W   +++ M+  GN
Sbjct: 31  YCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGN 90

Query: 61  KAAHDFLNAQ-------PDWDDTMT--IQQKYNTKAAALYRDKVSSS 98
             A     A        P  D  +   I+ KY  K    Y DK + +
Sbjct: 91  TKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKK---KYYDKNAIA 134

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  119 bits (300), Expect = 1e-32
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            C +C A +P W S   GI  C+ECSG HR LGVH S ++S+++D     EL   K  GN
Sbjct: 19  VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGN 78

Query: 61  KAAHDFLNA--------QPDWDDTMT-----IQQKYNTKA 87
              ++ +          +P+    M      I  KY  + 
Sbjct: 79  AGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERR 118

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score =  115 bits (289), Expect = 1e-32
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           KCF+C+   P + ++T G ++C  CSG  RGL      V+SISM  +   E+E ++  GN
Sbjct: 27  KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGN 85

Query: 61  KAAHDFLNAQ--------PDWDDTMT----IQQKYNTK 86
           +                 PD+ D       +Q+KY  K
Sbjct: 86  EVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKK 123

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  115 bits (288), Expect = 9e-31
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           +C +C A +P W S   G+  C++CSG HR LGV  S ++S+++D     EL      GN
Sbjct: 44  QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103

Query: 61  KAAHDFLNA--------QPDWDDTMT-----IQQKYNTKA 87
            + ++ + A        +P  +  M      I  KY    
Sbjct: 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHR 143

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  115 bits (290), Expect = 2e-30
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 13/99 (13%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           +C +C A +P WAS T G++ICL CSG HR +   +S V+S+ +D W++ ++E M   GN
Sbjct: 36  RCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGN 94

Query: 61  KAAHDFLNAQ-------PDWDDTMT-----IQQKYNTKA 87
            AA     ++       P   D        I+ KY  + 
Sbjct: 95  DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQE 133

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  111 bits (278), Expect = 8e-29
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 13/100 (13%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           +C +C    P+WAS+  G+ +C++CSG HR LGVH S VRS+++D W+   ++ M   GN
Sbjct: 47  QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 106

Query: 61  KAAHDFLNAQ--------PDWDDTMT-----IQQKYNTKA 87
              +    A+        P    +       I  KY  K 
Sbjct: 107 VIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKK 146

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  106 bits (265), Expect = 2e-26
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
           +C +C A +P W S   G+  C++CSG HR LGV  S ++S+++D     EL      GN
Sbjct: 25  QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84

Query: 61  KAAHDFLNAQ--------PDWDDTMT-----IQQKYNTKA 87
            + ++ + AQ        P  +  M      I  KY    
Sbjct: 85  TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHR 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	100.0
2owa_A	138	Arfgap-like finger domain containing protein; zinc	100.0
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	100.0
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	100.0
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	100.0
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.96
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
1u5k_A	244	Hypothetical protein; OBD-fold, Zn-binding, recomb	84.37

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.5e-42  Score=289.41  Aligned_cols=108  Identities=64%  Similarity=1.151  Sum_probs=96.2

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+||+++.++++..+|+
T Consensus        40 ~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~~~~~~~~~~  119 (147)
T 3dwd_A           40 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQ  119 (147)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTSTTCCTTCCHH
T ss_pred             ccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCCCCCCCCCHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999998888889999


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKG  108 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~  108 (262)
                      +||+++++++||++|+++++||+|++++
T Consensus       120 ~KY~s~aA~~Yr~~l~~~~eg~~w~~~~  147 (147)
T 3dwd_A          120 EKYNSRAAALFRDKVVALAEGREWSLES  147 (147)
T ss_dssp             HHHTSHHHHHHHHHHHHHHC--------
T ss_pred             HhhCCHHHHHHHHHHHHHHcCCcCCCCC
Confidence            9999999999999999999999999874

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.3e-38  Score=265.10  Aligned_cols=100  Identities=33%  Similarity=0.741  Sum_probs=95.9

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+||||||||+||.|+++||++|+.+||.++|+||+++.+.++..+++
T Consensus        38 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~~~~~~~~  117 (138)
T 2owa_A           38 TCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTK  117 (138)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCTTCCGGGC
T ss_pred             cCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCCCCCCCHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999955667788999


Q ss_pred             hhhccHHHHHHHHHHhcccC
Q psy62            81 QKYNTKAAALYRDKVSSSYM  100 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~  100 (262)
                      +||+++++++||++|.++++
T Consensus       118 ~kY~s~~a~~Y~~kL~~~~~  137 (138)
T 2owa_A          118 EYASSICGRQYKQILDSEIS  137 (138)
T ss_dssp             HHHHSHHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHHh
Confidence            99999999999999999876

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.2e-37  Score=261.23  Aligned_cols=101  Identities=44%  Similarity=0.785  Sum_probs=94.3

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++++||+.+.. + ...++
T Consensus        24 ~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~-~-~~~p~  101 (163)
T 3sub_A           24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGI-S-DFIPE  101 (163)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTC-T-TSCHH
T ss_pred             ccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCC-c-ccChh
Confidence            599999999999999999999999999999999999999999999999999999999999999999999754 2 23457


Q ss_pred             hhhccHHHHHHHHHHhcccCCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNT  103 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~  103 (262)
                      +||.++++++||++|+++++|++
T Consensus       102 ~KY~s~aA~~Yr~~L~~~v~~~~  124 (163)
T 3sub_A          102 RKYRTKAADHYRKILRSIVHNVD  124 (163)
T ss_dssp             HHTTBHHHHHHHHHHHHHHTTCC
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999944

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=260.73  Aligned_cols=98  Identities=49%  Similarity=0.969  Sum_probs=93.0

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCC-CCHHHHHhhhcCChHHHHHHHhhCCCCCCCchh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDK-WKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTI   79 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~-W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I   79 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+||||||||+||. |+++||+.|+.+||.++|+||+++...  ..+|
T Consensus        31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~--~~~i  108 (149)
T 2crw_A           31 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCS--TNDT  108 (149)
T ss_dssp             BCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCC--CCCH
T ss_pred             cCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCC--Ccch
Confidence            5999999999999999999999999999999999999999999996 999999999999999999999998653  5689


Q ss_pred             hhhhccHHHHHHHHHHhcccC
Q psy62            80 QQKYNTKAAALYRDKVSSSYM  100 (262)
Q Consensus        80 ~~KY~~~aa~~yr~kl~~~~~  100 (262)
                      ++||+++++++||++|.++++
T Consensus       109 ~~KY~s~~a~~Yr~~l~~~~~  129 (149)
T 2crw_A          109 NAKYNSRAAQLYREKIKSLAS  129 (149)
T ss_dssp             HHHTTSHHHHHHHHHHHHHHH
T ss_pred             hhCcCcHHHHHHHHHHHHHHH
Confidence            999999999999999998765

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=254.54  Aligned_cols=98  Identities=46%  Similarity=0.934  Sum_probs=92.5

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCC-CCHHHHHhhhcCChHHHHHHHhhCCCCCCCchh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDK-WKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTI   79 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~-W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I   79 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||. |+++||+.|+.+||.++|+||+++...  ..+|
T Consensus        39 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g~~--~~~~  116 (144)
T 2p57_A           39 ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT--ANDA  116 (144)
T ss_dssp             BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTTCC--CCSH
T ss_pred             cCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcCCC--CCch
Confidence            5999999999999999999999999999999999999999999996 999999999999999999999998543  2489


Q ss_pred             hhhhccHHHHHHHHHHhcccC
Q psy62            80 QQKYNTKAAALYRDKVSSSYM  100 (262)
Q Consensus        80 ~~KY~~~aa~~yr~kl~~~~~  100 (262)
                      ++||+++++++||++|+++++
T Consensus       117 ~~KY~s~aA~~Yr~~l~~~~~  137 (144)
T 2p57_A          117 NTKYNSRAAQMYREKIRQLGS  137 (144)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHHHH
Confidence            999999999999999998875

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=236.00  Aligned_cols=101  Identities=28%  Similarity=0.612  Sum_probs=87.3

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+|||++....  . . 
T Consensus        29 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~--~-~-  104 (134)
T 2iqj_A           29 FCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPET--F-R-  104 (134)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCSS--C-C-
T ss_pred             cCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCcc--C-C-
Confidence            59999999999999999999999999999999999999999999999999999999999999999999874321  1 0 


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKG  108 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~  108 (262)
                       |....  ...+++|+++|+.++|..+.
T Consensus       105 -~P~~~--~~~e~fIr~KY~~k~f~~~~  129 (134)
T 2iqj_A          105 -RPQID--PAVEGFIRDKYEKKKYMDRS  129 (134)
T ss_dssp             -CCCSH--HHHHHHHHHHHTSCTTCCTT
T ss_pred             -CCCch--HHHHHHHHHHHhCCeeeCCc
Confidence             11111  23578999999999998765

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=9.5e-34  Score=236.57  Aligned_cols=105  Identities=30%  Similarity=0.576  Sum_probs=89.2

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++|+|||++......    
T Consensus        31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~~----  106 (141)
T 2crr_A           31 YCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFR----  106 (141)
T ss_dssp             SCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSCCTTCC----
T ss_pred             cCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcCCcccC----
Confidence            5999999999999999999999999999999999999999999999999999999999999999999987432110    


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCCCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFDF  112 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~~  112 (262)
                       |....  ...+++|+++|+.++|..+.....
T Consensus       107 -~P~~~--~~~e~fIr~KY~~k~f~~~~~~~~  135 (141)
T 2crr_A          107 -RPQTD--QAVEFFIRDKYEKKKYYDKNAIAI  135 (141)
T ss_dssp             -CCCSH--HHHHHHHHHHHTSCTTCCCGGGCC
T ss_pred             -CCCch--HHHHHHHHHHHhcCcccCCCcccc
Confidence             11111  234689999999999997764433

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=1.4e-33  Score=235.31  Aligned_cols=104  Identities=25%  Similarity=0.464  Sum_probs=88.5

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+| |+||||+||.|+++||++|+.+||..+|+|||++.+.. .... 
T Consensus        27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~~~~~-~~~~-  103 (140)
T 2olm_A           27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDR-SSAI-  103 (140)
T ss_dssp             SCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTTCCTT-TSCC-
T ss_pred             cCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhhCCcc-cCCC-
Confidence            59999999999999999999999999999999997 99999999999999999999999999999999875321 1111 


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI  109 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~  109 (262)
                        ........++++|+++|++++|+.++.
T Consensus       104 --P~~~d~~~~~~fIr~KYe~k~f~~~~~  130 (140)
T 2olm_A          104 --PDFRDPQKVKEFLQEKYEKKRWYVPPE  130 (140)
T ss_dssp             --CCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred             --CCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence              111113467899999999999987653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.9e-32  Score=252.59  Aligned_cols=111  Identities=62%  Similarity=1.102  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+||+.+.+.++...+.
T Consensus        39 ~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~~~~~~~~i~  118 (329)
T 3o47_A           39 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQ  118 (329)
T ss_dssp             BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCSSCCTTCCHH
T ss_pred             cCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcCCCCCCCCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999987777788999


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGIFD  111 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~~~  111 (262)
                      ++|..++++.|++++....++++|..++++.
T Consensus       119 ~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~  149 (329)
T 3o47_A          119 EKYNSRAAALFRDKVVALAEGREWSLESSPA  149 (329)
T ss_dssp             HHHHSHHHHHHHHHHHHHHTTCCCCSCC---
T ss_pred             ccccchHHHHHhhhccccccCCccccccccc
Confidence            9999999999999999999999999887664

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.96  E-value=1.5e-29  Score=237.48  Aligned_cols=105  Identities=30%  Similarity=0.540  Sum_probs=86.5

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||..+|+|||++.+........
T Consensus        47 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~kp~  126 (368)
T 3jue_A           47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPG  126 (368)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTTTTTTTCCCCC
T ss_pred             cCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhhcccccCcCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999874311000000


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKG  108 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~  108 (262)
                      . -..  .....++|+++|+.++|....
T Consensus       127 ~-~~~--~~~re~fIr~KY~~k~f~~~l  151 (368)
T 3jue_A          127 P-SCS--RQEKEAWIHAKYVEKKFLTKL  151 (368)
T ss_dssp             T-TSC--HHHHHHHHHHHHTSCTTCCSC
T ss_pred             C-CCC--HHHHHHHHHHHHHhhcccccc
Confidence            0 011  123467899999999998764

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.95  E-value=1.6e-28  Score=232.88  Aligned_cols=104  Identities=30%  Similarity=0.549  Sum_probs=86.6

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      .|+|||+++|+|||++||||||++|||+||.| +|||+||||+||.|+++||++|+.+||.++|+|||++.+.....+- 
T Consensus        36 ~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~~~~~~~p~-  113 (386)
T 3lju_X           36 RCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPT-  113 (386)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTCCTTSCCCC-
T ss_pred             cCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccCCccCCCCC-
Confidence            59999999999999999999999999999999 9999999999999999999999999999999999987532110110 


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI  109 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~  109 (262)
                        ..+ ......++|+++|+.++|..++.
T Consensus       114 --~~~-~~~~~e~fIr~KY~~~~f~~~~~  139 (386)
T 3lju_X          114 --PSD-CQLLREQWIRAKYERQEFIYPEK  139 (386)
T ss_dssp             --TTS-CHHHHHHHHHHHHTSCTTTSGGG
T ss_pred             --Ccc-chHHHHHEHHhhhCCCEEECCcc
Confidence              111 11234468999999999997764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.8e-26  Score=208.84  Aligned_cols=105  Identities=28%  Similarity=0.511  Sum_probs=84.4

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|++++|.+|..+||..+|++||+...........
T Consensus        44 ~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~l~~~~~~kP~  123 (301)
T 2b0o_E           44 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPS  123 (301)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTTCCSSSCSCCC
T ss_pred             cCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHhhhhccCCCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999853221000000


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKG  108 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~  108 (262)
                      ....   .....++|.++|..+.|....
T Consensus       124 ~~s~---~~~r~~~I~~Ky~~~~f~~~~  148 (301)
T 2b0o_E          124 AESD---MGTRRDYIMAKYVEHRFARRC  148 (301)
T ss_dssp             TTCC---HHHHHHHHHHHHTSCTTSCCC
T ss_pred             Cccc---HHHHHHHHHHHHHhhhhhccc
Confidence            0111   223456778888888876654

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.93  E-value=2.2e-26  Score=220.57  Aligned_cols=106  Identities=27%  Similarity=0.504  Sum_probs=86.2

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      .|+|||+++|+|+|+++|||||++|+|+||.||+|||+||||+||.|+++++++|+.+||..+|++||+...........
T Consensus        25 ~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~~~~~kP~  104 (497)
T 3lvq_E           25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPS  104 (497)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCSSSCSCCC
T ss_pred             cccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhcccccCCCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999864321111111


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI  109 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~  109 (262)
                      ....   ....+++|.++|+.+.|.....
T Consensus       105 ~~s~---~~~re~fIraky~~~~f~~~~~  130 (497)
T 3lvq_E          105 AESD---MGTRRDYIMAKYVEHRFARRCT  130 (497)
T ss_dssp             TTCC---HHHHHHHHHHHHTTCTTSCCCC
T ss_pred             CcCc---HHHHHHHHHHHhhccccccccc
Confidence            0111   2345667888888888876543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=3.1e-26  Score=204.88  Aligned_cols=106  Identities=30%  Similarity=0.554  Sum_probs=86.7

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      .|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|.++++..|..+||..++++||+.......  .+
T Consensus        19 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~--~k   96 (278)
T 1dcq_A           19 VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDP--VK   96 (278)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC--CS
T ss_pred             cCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc--CC
Confidence            5999999999999999999999999999999999999999999999999999999999999999999986432111  11


Q ss_pred             hhhccHHHHHHHHHHhcccCCCCcccCCC
Q psy62            81 QKYNTKAAALYRDKVSSSYMFNTFTTKGI  109 (262)
Q Consensus        81 ~KY~~~aa~~yr~kl~~~~~gr~~~~~~~  109 (262)
                      ..+... .....++|+++|..++|..+..
T Consensus        97 P~~~s~-~~~~~~fI~aKYl~~~f~~~~~  124 (278)
T 1dcq_A           97 PNPGSD-MIARKDYITAKYMERRYARKKH  124 (278)
T ss_dssp             CCTTCC-HHHHHHHHHHHHTTCTTSCCCS
T ss_pred             CCCCCC-HHHHHHHHHHHHHHhhcccccc
Confidence            111111 1345778888899888877654

>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C

Probab=84.37  E-value=1.3  Score=38.21  Aligned_cols=47  Identities=17%  Similarity=0.458  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHH
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAA   63 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~   63 (262)
                      .|+.||.+...+.++..|.++|..|...+                ..+.+++..|+..-...+
T Consensus       152 ~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~  198 (244)
T 1u5k_A          152 RCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTV  198 (244)
T ss_dssp             BCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCH
T ss_pred             ccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCH
Confidence            49999999667889999999999995321                356777777755444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	5e-29

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (261), Expect = 5e-29
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 1   KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGN 60
            C +C A +P W S   GI  C+ECSG HR LGVH S ++S+++D     EL   K  GN
Sbjct: 17  VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGN 76

Query: 61  KAAHDFLNAQPDWDDTMTIQQKYNTKAAALYRDK-VSSSYMFNTFTTK 107
              ++ +      +D      K N  +  + R   +++ YM   +  K
Sbjct: 77  AGFNEIMECCLPSED----PVKPNPGSDMIARKDYITAKYMERRYARK 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d1u5ka2	157	Recombinational repair protein RecO, C-terminal do	89.33

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-35  Score=234.85  Aligned_cols=104  Identities=33%  Similarity=0.570  Sum_probs=88.6

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhhhhcCCCCCccceeecccCCCCHHHHHhhhcCChHHHHHHHhhCCCCCCCchhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSGKHRGLGVHLSFVRSISMDKWKDIELEKMKVGGNKAAHDFLNAQPDWDDTMTIQ   80 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~CsgvHR~LGvhiS~VrSitmD~W~~~el~~m~~gGN~~~n~f~e~~~~~~~~~~I~   80 (262)
                      +|+|||+++|+|||++||||||++|||+||.||+|||+||||+||.|+++||++|+.+||..+|++||++....+..   
T Consensus        17 ~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~~ea~~~~~~~~---   93 (122)
T d1dcqa2          17 VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV---   93 (122)
T ss_dssp             BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC---
T ss_pred             ccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHHHHhhCCcccCc---
Confidence            59999999999999999999999999999999999999999999999999999999999999999999875322211   


Q ss_pred             hhhccH-HHHHHHHHHhcccCCCCcccCC
Q psy62            81 QKYNTK-AAALYRDKVSSSYMFNTFTTKG  108 (262)
Q Consensus        81 ~KY~~~-aa~~yr~kl~~~~~gr~~~~~~  108 (262)
                       |+... .....+++|.++|+.++|..+.
T Consensus        94 -kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          94 -KPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             -SCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             -CCCCCccHHHHHHHHHHHHHhCcccccc
Confidence             22211 1233567899999999998764

>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.33  E-value=0.065  Score=41.74  Aligned_cols=27  Identities=26%  Similarity=0.746  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCCeeEcccceeEehhhhh
Q psy62             1 KCFECNAHNPQWASVTYGIWICLECSG   27 (262)
Q Consensus         1 ~C~DCga~~P~WaSv~~GifiC~~Csg   27 (262)
                      .|+.||.+.+.|.++.-|.++|..|..
T Consensus        72 ~C~~cg~~~~~~f~~~~Gg~~C~~c~~   98 (157)
T d1u5ka2          72 RCARCGAPDPEHPDPLGGQLLCSKCAA   98 (157)
T ss_dssp             BCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred             hHhcCCCCCCCcccccCCeeECCCCCC
Confidence            499999999999999999999999953