Psyllid ID: psy6304

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK
cccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEcccccccHHHHHccccccccccccccEEEcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccHHHHcHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHccc
cccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHcccHHHHccEEEEEEcccccccccccccccccccEEccccHHHHHcccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccHHccccccccHHHHHHcccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
mfpgtmhigYNRFRFLLECLADLDRQLkshggqlfivqgspiSIFQKLKRELNFTKLcfeqdcegvkpyqsfptgshppryqpcktllnfrdlsglpprpkedidfrhvtfgtmsESLQREVSLfqtvpkpeqfhkypemdfgdplirwLGGETEALIKLNERLSQEIESFksgvylsnqvspdltgpptsqsaalkfGCLSVRRFYWALHDHfntihegrppshfnitgqLIWREYFYTmsahnpyydqmeknpiclnipwlpeshpnkekYLNAWkngqtgypFIDAVMRQLRRLLdctycvcpvnfgrrldpdgiyikryvpelrqfpiqyiyepwkaplgvqekanciiskdypeRIVNHVQASLENKQYLKKEKAnciinkdypeRIVNHVQASLENKQNVK
mfpgtmhiGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFntihegrppsHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCpvnfgrrldpdgIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVqaslenkqnvk
MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK
*****MHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSF********YQPCKTLLNFRDL**********IDFRHVTFGTM******EVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYL****************AALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHV***********
MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHD**************NITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLK*******************************
MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVS**********SAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQAS********
*F**TMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINK*********************
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MFPGTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEGVKPYQSFPTGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCIINKDYPERIVNHVQASLENKQNVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q17DK5545 Cryptochrome-1 OS=Aedes a N/A N/A 0.889 0.664 0.404 1e-85
Q7PYI7545 Cryptochrome-1 OS=Anophel yes N/A 0.931 0.695 0.371 7e-83
O77059542 Cryptochrome-1 OS=Drosoph yes N/A 0.916 0.688 0.364 6e-76
Q293P8540 Cryptochrome-1 OS=Drosoph yes N/A 0.916 0.690 0.364 3e-75
B0WRR9499 Cryptochrome-1 OS=Culex q N/A N/A 0.687 0.561 0.423 4e-69
Q923I8594 Cryptochrome-2 OS=Rattus yes N/A 0.872 0.597 0.329 7e-60
Q6ZZY0 620 Cryptochrome-1 OS=Sylvia N/A N/A 0.899 0.590 0.337 9e-59
Q32Q86588 Cryptochrome-1 OS=Rattus no N/A 0.884 0.612 0.326 1e-58
Q5IZC5 620 Cryptochrome-1 OS=Erithac N/A N/A 0.894 0.587 0.338 2e-58
Q9R194592 Cryptochrome-2 OS=Mus mus yes N/A 0.872 0.599 0.325 3e-58
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1 Back     alignment and function desciption
 Score =  317 bits (812), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/467 (40%), Positives = 244/467 (52%), Gaps = 105/467 (22%)

Query: 4   GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
           GT  +G+NR +FLLE LADLDRQL+  GGQL++ +G+ +++ ++L  ELN  KLCFEQDC
Sbjct: 49  GTKLVGFNRMKFLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDC 108

Query: 64  EGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNFRDL 93
           E +                             P Q   T G  PP  YQ     L+  D+
Sbjct: 109 EPIWKARDDAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQ---MFLHTVDI 165

Query: 94  SGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVP-KPEQFHKYPEMDFGDPLI---RW 149
            G PPRP     F  V FG++   L +EV L Q     PE F  Y E   G+P I   +W
Sbjct: 166 IGKPPRPVAAPSFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYE---GNPDISHQQW 222

Query: 150 LGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWA 209
           +GGET+AL  L  RL QE E+F  G +L  Q  P+   PPTS SAAL+FGCLSVR FYW 
Sbjct: 223 MGGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWC 282

Query: 210 LHDHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
           +HD +  +      R P   +ITGQLIWREYFYTMS HNP+Y +ME NPICLNIPW    
Sbjct: 283 VHDLYEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPW---- 338

Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQ--------------------------------- 293
           +  K+  L+ WK G+TG+P IDA MRQ                                 
Sbjct: 339 YEPKDDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQ 398

Query: 294 --LRRLLDCTYCVC-----------------------PVNFGRRLDPDGIYIKRYVPELR 328
             L+ LLD  + VC                       P+   RRLDP G Y++RY+PEL+
Sbjct: 399 HFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELK 458

Query: 329 QFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYL 375
             P  Y++EPWKAPL VQ++  CI+ +DYP  +++   AS  N   +
Sbjct: 459 NLPTLYVHEPWKAPLDVQKECGCIVGRDYPAPMIDLAAASRANANTM 505
Blue light-dependent regulator that is the input of the circadian feedback loop. Has no photolyase activity for cyclobutane pyrimidine dimers or 6-4 photoproducts. Regulation of expression by light suggests a role in photoreception for locomotor activity rhythms. Functions, together with per, as a transcriptional repressor required for the oscillation of peripheral circadian clocks and for the correct specification of clock cells. Genes directly activated by the transcription factors Clock (Clk) and cycle (cyc) are repressed by cry.
Aedes aegypti (taxid: 7159)
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4 Back     alignment and function description
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1 Back     alignment and function description
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry PE=3 SV=2 Back     alignment and function description
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1 Back     alignment and function description
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1 Back     alignment and function description
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2 Back     alignment and function description
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
124107288 539 cryptochrome precursor [Dianemobius nigr 0.899 0.679 0.419 2e-94
62955979 548 antennal cryptochrome [Mamestra brassica 0.894 0.664 0.427 8e-93
13022111 525 cryptochrome [Antheraea pernyi] 0.899 0.697 0.424 9e-93
324103935 548 cryptochrome [Spodoptera exigua] gi|3241 0.894 0.664 0.423 4e-92
404313303 528 cryptochrome 1 [Mythimna separata] 0.896 0.691 0.422 1e-91
371574660 528 cryptochrome 1 [Helicoverpa armigera] 0.896 0.691 0.420 2e-90
307826658 548 cryptochrome [Helicoverpa armigera] 0.894 0.664 0.421 2e-90
307611923 536 cryptochrome 1 [Bombyx mori] gi|30641610 0.904 0.686 0.420 3e-90
62001759 534 cryptochrome [Danaus plexippus] gi|35760 0.869 0.662 0.422 4e-90
386762983 528 cryptochrome 1 [Agrotis ipsilon] 0.896 0.691 0.416 5e-90
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus] Back     alignment and taxonomy information
 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/462 (41%), Positives = 262/462 (56%), Gaps = 96/462 (20%)

Query: 4   GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDC 63
           GT  +GYNR +FLLE L D+D QLK +GG L++  G+P+ +FQ + + +   KLCFEQDC
Sbjct: 50  GTKLVGYNRMKFLLESLQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHKLCFEQDC 109

Query: 64  E-----------------GVK-----------PYQSFPT-GSHPPRYQPCKTLLNFRDLS 94
           E                 G+K           P+    T G  PP     +  ++   + 
Sbjct: 110 EPIWQHRDDLVKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPL--TFEMFVHTVSVI 167

Query: 95  GLPPRPKEDIDFRHVTFGTM-SESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWLGGE 153
           G PPRP ED+++  V FG +   S+  ++ +F+  P PE F    E+   + +I+W+GGE
Sbjct: 168 GPPPRPVEDVEWSVVNFGVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGE 227

Query: 154 TEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDH 213
           ++AL  L ERL  E  +F+ G  L NQ  PDL GPPTSQSAAL+FGCLSVR+FYW++ D 
Sbjct: 228 SQALRHLQERLKVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDM 287

Query: 214 FNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKY 273
           +++I    P  + NIT QLIWREYFYTMS  N YY +M++NPICLNIPW  +   +    
Sbjct: 288 YSSI--CGPSPNQNITSQLIWREYFYTMSVGNEYYAEMDRNPICLNIPWKNDYGSD---- 341

Query: 274 LNAWKNGQTGYPFIDAVMRQ-----------------------------------LRRLL 298
            N WK G+TGYPFIDA+MRQ                                   L+ LL
Sbjct: 342 FNKWKEGKTGYPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLL 401

Query: 299 DCTY-----------------------CVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
           D  +                       C+CPVN+GRRLDP G YIKRY+PEL+ +P++Y+
Sbjct: 402 DADWSVCAGNWMWVSSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYL 461

Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
           YEPWKAPL VQE A CI+ KDYPERI++H  AS +N+ Y+ +
Sbjct: 462 YEPWKAPLHVQETAGCIVGKDYPERIIDHQIASEKNRSYMDE 503

Source: Dianemobius nigrofasciatus

Species: Dianemobius nigrofasciatus

Genus: Dianemobius

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae] Back     alignment and taxonomy information
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi] Back     alignment and taxonomy information
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua] gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua] Back     alignment and taxonomy information
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata] Back     alignment and taxonomy information
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera] Back     alignment and taxonomy information
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera] Back     alignment and taxonomy information
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori] gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori] gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori] Back     alignment and taxonomy information
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus] gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus] Back     alignment and taxonomy information
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
UNIPROTKB|Q17DK5545 cry "Cryptochrome-1" [Aedes ae 0.533 0.398 0.5 6.8e-91
UNIPROTKB|Q7PYI7545 Cry1 "Cryptochrome-1" [Anophel 0.587 0.438 0.451 6e-88
FB|FBgn0025680542 cry "cryptochrome" [Drosophila 0.520 0.391 0.478 4.5e-82
UNIPROTKB|Q293P8540 cry "Cryptochrome-1" [Drosophi 0.520 0.392 0.469 7.3e-82
UNIPROTKB|B0WRR9499 cry "Cryptochrome-1" [Culex qu 0.488 0.398 0.514 3.7e-72
RGD|620935 594 Cry2 "cryptochrome 2 (photolya 0.506 0.346 0.349 5.6e-66
UNIPROTKB|Q923I8 594 Cry2 "Cryptochrome-2" [Rattus 0.506 0.346 0.349 5.6e-66
ZFIN|ZDB-GENE-010426-6 598 cry3 "cryptochrome 3" [Danio r 0.353 0.240 0.455 2.8e-65
UNIPROTKB|E2RMX4 587 CRY1 "Uncharacterized protein" 0.353 0.245 0.416 5.8e-65
UNIPROTKB|Q16526 586 CRY1 "Cryptochrome-1" [Homo sa 0.339 0.235 0.42 1.3e-64
UNIPROTKB|Q17DK5 cry "Cryptochrome-1" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
 Score = 521 (188.5 bits), Expect = 6.8e-91, Sum P(3) = 6.8e-91
 Identities = 118/236 (50%), Positives = 143/236 (60%)

Query:    68 PYQSFPT-GSHPP-RYQPCKTLLNFRDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLF 125
             P Q   T G  PP  YQ     L+  D+ G PPRP     F  V FG++   L +EV L 
Sbjct:   141 PQQIIRTNGGIPPLTYQ---MFLHTVDIIGKPPRPVAAPSFEFVEFGSIPSILAQEVKLQ 197

Query:   126 QTVP-KPEQFHKYPEMDFGDPLI---RWLGGETEALIKLNERLSQEIESFKSGVYLSNQV 181
             Q     PE F  Y E   G+P I   +W+GGET+AL  L  RL QE E+F  G +L  Q 
Sbjct:   198 QVRNLSPEDFGIYYE---GNPDISHQQWMGGETKALECLGHRLKQEEEAFLGGYFLPTQA 254

Query:   182 SPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI---HEGRPPSHFNITGQLIWREYF 238
              P+   PPTS SAAL+FGCLSVR FYW +HD +  +   ++ R P   +ITGQLIWREYF
Sbjct:   255 KPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQHITGQLIWREYF 314

Query:   239 YTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQL 294
             YTMS HNP+Y +ME NPICLNIPW     P K+  L+ WK G+TG+P IDA MRQL
Sbjct:   315 YTMSVHNPHYAEMEANPICLNIPWY---EP-KDDSLDRWKEGRTGFPMIDAAMRQL 366
GO:0000060 "protein import into nucleus, translocation" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005641 "nuclear envelope lumen" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0009785 "blue light signaling pathway" evidence=ISS
GO:0009882 "blue light photoreceptor activity" evidence=ISS
GO:0042752 "regulation of circadian rhythm" evidence=ISS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS
GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS
UNIPROTKB|Q7PYI7 Cry1 "Cryptochrome-1" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
FB|FBgn0025680 cry "cryptochrome" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q293P8 cry "Cryptochrome-1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
UNIPROTKB|B0WRR9 cry "Cryptochrome-1" [Culex quinquefasciatus (taxid:7176)] Back     alignment and assigned GO terms
RGD|620935 Cry2 "cryptochrome 2 (photolyase-like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q923I8 Cry2 "Cryptochrome-2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010426-6 cry3 "cryptochrome 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMX4 CRY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q16526 CRY1 "Cryptochrome-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48652UVR3_ARATH4, ., 1, ., 9, 9, ., 1, 30.31820.88200.6456yesN/A
Q0E2Y1UVR3_ORYSJ4, ., 1, ., 9, 9, ., 1, 30.31420.92380.6823yesN/A
Q16526CRY1_HUMANNo assigned EC number0.33330.89920.6245yesN/A
O77059CRY1_DROMENo assigned EC number0.36470.91640.6881yesN/A
Q293P8CRY1_DROPSNo assigned EC number0.36470.91640.6907yesN/A
Q7PYI7CRY1_ANOGANo assigned EC number0.37100.93120.6954yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
pfam03441276 pfam03441, FAD_binding_7, FAD binding domain of DN 3e-58
COG0415461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 2e-25
TIGR02765429 TIGR02765, crypto_DASH, cryptochrome, DASH family 2e-21
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 2e-12
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 5e-11
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 2e-10
TIGR02766475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 5e-09
PRK10674472 PRK10674, PRK10674, deoxyribodipyrimidine photolya 3e-08
TIGR03556471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 3e-04
>gnl|CDD|217559 pfam03441, FAD_binding_7, FAD binding domain of DNA photolyase Back     alignment and domain information 
 Score =  191 bits (487), Expect = 3e-58
 Identities = 84/287 (29%), Positives = 115/287 (40%), Gaps = 73/287 (25%)

Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRRFYWA 209
           GGE  AL +L   L + +  +           P   G  TS+ S  L FG +S R+ Y A
Sbjct: 1   GGEKAALKRLESFLKERLADYAKDRD-----DPAADG--TSRLSPYLHFGEISPRQVYQA 53

Query: 210 LHDHFNTIHEG---RPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPES 266
           +        EG   +    F    +LIWRE++  +  HNP  ++   N     +PW    
Sbjct: 54  VRKAQGDSPEGGAKQGAEAF--LSELIWREFYIQLLYHNPDLERENLNDAYDGLPW--AK 109

Query: 267 HPNKEKYLNAWKNGQTGYPFIDAVMRQ--------------------------------- 293
               E  L AW+ G+TGYP +DA MRQ                                 
Sbjct: 110 DRPDEYLLEAWEEGRTGYPLVDAAMRQLRQTGWMHNRLRMIVASFLTKKLLIDWREGEEY 169

Query: 294 -LRRLLD--------------CT--------YCVCPVNFGRRLDPDGIYIKRYVPELRQF 330
               L+D               T            PV    + DP+G YI+R+VPEL   
Sbjct: 170 FAETLIDADPASNNGGWQWQAGTGTDAAPYFRIFNPVKQSDKFDPNGEYIRRWVPELAGL 229

Query: 331 PIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKK 377
           P +YI+EPWKAP  VQ  A C++ KDYP+ IV+H +A        K 
Sbjct: 230 PDRYIHEPWKAPRPVQ--AGCVLGKDYPKPIVDHKEARKRALDAYKA 274

Length = 276
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information
>gnl|CDD|236734 PRK10674, PRK10674, deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
COG0415461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
TIGR02766475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
PRK10674472 deoxyribodipyrimidine photolyase; Provisional 100.0
TIGR03556471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
PF03441277 FAD_binding_7: FAD binding domain of DNA photolyas 100.0
TIGR02765429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
KOG0133|consensus531 100.0
TIGR00591454 phr2 photolyase PhrII. All proteins in this family 100.0
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 99.55
COG3046505 Uncharacterized protein related to deoxyribodipyri 99.23
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=8e-79  Score=605.44  Aligned_cols=331  Identities=27%  Similarity=0.430  Sum_probs=275.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------eeeE
Q psy6304           7 HIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------VKPY   69 (407)
Q Consensus         7 ~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v~~~   69 (407)
                      ..|+++++||.+||++|+++|+++||+|+|+.|+|.++|++|+++++++.|++|++|++                 |.++
T Consensus        44 ~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~  123 (461)
T COG0415          44 HASPRHAAFLLQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVH  123 (461)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEE
Confidence            68999999999999999999999999999999999999999999999999999999976                 3333


Q ss_pred             E-----------ecC-CCCCCCccCcchhHHHHhhhcCCCCCCCCCCccc-ccccCCcchhHHhhhhccCCCCCCccCCC
Q psy6304          70 Q-----------SFP-TGSHPPRYQPCKTLLNFRDLSGLPPRPKEDIDFR-HVTFGTMSESLQREVSLFQTVPKPEQFHK  136 (407)
Q Consensus        70 ~-----------i~~-~g~~~~~ftp~~~f~~~~~~~~~~~~p~~~p~~~-~~~~~~~~~~~~~~~~~~~~~p~l~~lg~  136 (407)
                      .           |.+ .|++|++||   +|++.+........|.+.|... .+......+      ... ..|+  .   
T Consensus       124 ~~~d~~l~~p~~~~t~~~~~y~vfT---~F~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~~-~~P~--~---  188 (461)
T COG0415         124 SFWDALLHEPGEVRTGSGEPYKVFT---PFYKAWRDRLRILRPVPAPDVLDALRDEEPPP------EEI-SLPD--F---  188 (461)
T ss_pred             EeccccccCHhhccCCCCCCccccc---hHHHHHHHhcccCCCCCCcchhccccccccCc------ccc-cCCc--c---
Confidence            3           344 788999999   7877776543333444444311 010000000      000 1121  0   


Q ss_pred             CCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHhhcc
Q psy6304         137 YPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNT  216 (407)
Q Consensus       137 ~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~  216 (407)
                      ..     .....+.|||.+|+++|++|+  +..  +.+|+..|+ .++ .++||+|||||+||+||||+||+++.+....
T Consensus       189 ~~-----~~~~~~~~Ge~aA~~~l~~F~--~~~--l~~Y~~~Rd-~p~-~~~TS~LSpyL~~G~IS~r~v~~~~~~~~~~  257 (461)
T COG0415         189 SK-----FDVLLFTGGEKAALARLQDFL--AEG--LDDYERTRD-FPA-LDGTSRLSPYLAFGVISPREVYAALLAAESD  257 (461)
T ss_pred             cc-----ccccCCCchHHHHHHHHHHHH--HHH--HHHHHHhcC-Ccc-cccccccCHHHHcCCcCHHHHHHHHHHhhhc
Confidence            00     113468999999999999999  763  899988776 444 6899999999999999999999999876543


Q ss_pred             cCCCCCCchhHHHHHHHHHHHHHHHHhcCCCc-ccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhhHHHh
Q psy6304         217 IHEGRPPSHFNITGQLIWREYFYTMSAHNPYY-DQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR  295 (407)
Q Consensus       217 ~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~-~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaMRqL~  295 (407)
                          .++++.+|++||+|||||++++.++|++ ...++...++.++|+.     |++.|++||+|+|||||||||||||+
T Consensus       258 ----~~~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~~~~~~~~~w~~-----~~~~f~aW~~G~TGyPIVDA~MRqL~  328 (461)
T COG0415         258 ----AREGTAALINELIWREFYQHLLYHYPSLSRFEPFAEKTLNIPWED-----NPAHFQAWQEGKTGYPIVDAAMRQLN  328 (461)
T ss_pred             ----ccchHHHHHHHHHHHHHHHHHHHhCCcccccccccccccCCcccc-----CHHHHHHHhcCCCCCccccHHHHHHH
Confidence                2677889999999999999999999999 6678899999999999     99999999999999999999999999


Q ss_pred             --------------------------------------------------------hhhcCCCCCCcchhhhccCCCCch
Q psy6304         296 --------------------------------------------------------RLLDCTYCVCPVNFGRRLDPDGIY  319 (407)
Q Consensus       296 --------------------------------------------------------~~~~y~RifNPv~Q~~~~Dp~G~f  319 (407)
                                                                              |..||||||||++|++||||+|+|
T Consensus       329 ~TG~MHNR~RMivAsFL~k~L~IdWR~GE~~F~~~LiD~D~asN~ggWQW~AstG~Da~pyfRiFNp~~Q~~kfDp~g~f  408 (461)
T COG0415         329 QTGYMHNRMRMIVASFLTKDLLIDWREGEKYFMRQLIDGDPASNNGGWQWAASTGTDAAPYFRIFNPVTQAEKFDPDGEF  408 (461)
T ss_pred             HhCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCCCcccCCCCeeEEeccCCCCCcceeccCHHHHHhhcCCCccc
Confidence                                                                    567899999999999999999999


Q ss_pred             hhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy6304         320 IKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEK  379 (407)
Q Consensus       320 Ir~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~  379 (407)
                      ||+|||||++||+++||+||+++.       +.+|.+||.|||||+++|+.|+++|+.++
T Consensus       409 Ir~wvPeL~~~~~~~ih~p~~~~~-------~~~~~~YP~piVd~~~~r~~a~~~y~~~~  461 (461)
T COG0415         409 IRRWVPELRNLPDKYIHEPWELSE-------VVLGVDYPKPIVDHKESREQALAAYEAAK  461 (461)
T ss_pred             HHhhCHHhhCCChhhccChhhccc-------ccccCCCCccccccHHHHHHHHHHHHhcC
Confidence            999999999999999999999886       55689999999999999999999998753

>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PF03441 FAD_binding_7: FAD binding domain of DNA photolyase from Prosite Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
4gu5_A539 Structure Of Full-Length Drosophila Cryptochrome Le 6e-77
3fy4_A537 (6-4) Photolyase Crystal Structure Length = 537 2e-51
3cvx_A543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 2e-47
3cvu_A543 Drosophila Melanogaster (6-4) Photolyase Bound To D 2e-47
3cvw_A543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 2e-47
1np7_A489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 2e-12
1dnp_A471 Structure Of Deoxyribodipyrimidine Photolyase Lengt 8e-11
1owl_A484 Structure Of Apophotolyase From Anacystis Nidulans 4e-09
1tez_A474 Complex Between Dna And The Dna Photolyase From Ana 4e-09
2vtb_B525 Structure Of Cryptochrome 3 - Dna Complex Length = 1e-08
2j4d_A525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 8e-08
2ijg_X526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 8e-08
2e0i_A440 Crystal Structure Of Archaeal Photolyase From Sulfo 1e-07
1u3c_A509 Crystal Structure Of The Phr Domain Of Cryptochrome 3e-07
1iqr_A420 Crystal Structure Of Dna Photolyase From Thermus Th 5e-05
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure 
Iteration: 1

 Score =  284 bits (727), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 174/477 (36%), Positives = 234/477 (49%), Gaps = 104/477 (21%)
Query: 4   GTMHIGYNRFRFLLECLADLDRQLKSHG---GQLFIVQGSPISIFQKLKRELNFTKLCFE 60
           GT ++GYNR RFLL+ L D+D QL++     G+L + +G P  IF++L  ++   ++C E
Sbjct: 48  GTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIE 107
Query: 61  QDCEGV----------------------------KPYQSFPT-GSHPP-RYQPCKTLLNF 90
           QDCE +                             P     T G  PP  YQ     L+ 
Sbjct: 108 QDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQ---MFLHT 164
Query: 91  RDLSGLPPRPKEDIDFRHVTFGTMSESLQREVSLFQTVPKPEQFHKYPEMDFGDPLIRWL 150
             + GLPPRP  D      TF  +     R + LF+ +P PE F+ Y +       I W 
Sbjct: 165 VQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWR 224
Query: 151 GGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWAL 210
           GGET+AL+ L+ERL  E  +F+ G YL NQ  P++   P S SA L+FGCLSVRRFYW++
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 211 HDHFNTIH------EGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLP 264
           HD F  +         +     +ITGQLIWREYFYTMS +NP YD+ME N ICL+IPW  
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPW-- 342
Query: 265 ESHPNKEKYLNAWKNGQTGYPFIDAVMRQ------------------------------- 293
            + PN E  L +W+ GQTG+P ID  MRQ                               
Sbjct: 343 -AKPN-ENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 294 ----LRRLLDCTYCV-----------------------CPVNFGRRLDPDGIYIKRYVPE 326
               L+ LLD  + V                       CPV   +RLDPDG YIK+YVPE
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPE 460
Query: 327 LRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI 383
           L   P ++++EPW+     QE+  C+I   YPERI++   A   N   +K  + + I
Sbjct: 461 LMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNSLI 517
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase Length = 471 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From Arabidopsis Thaliana Length = 509 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 1e-103
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-100
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 2e-95
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 1e-60
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 4e-53
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 5e-32
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 2e-05
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 4e-29
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 2e-13
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 4e-29
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 2e-13
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 1e-27
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 5e-18
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 2e-27
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 2e-13
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 6e-27
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
3fy4_A537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A538 Cryptochrome-1; circadian clock light entrainment, 100.0
2wq7_A543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
1np7_A489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
1u3d_A509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
1owl_A484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1dnp_A471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2e0i_A440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
2j4d_A525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
2j07_A420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 100.0
3umv_A506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2xry_A482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 100.0
3zxs_A522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 100.0
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=5.4e-83  Score=659.65  Aligned_cols=381  Identities=34%  Similarity=0.617  Sum_probs=311.0

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHHhCCceEEEEeeece-----------------e
Q psy6304           4 GTMHIGYNRFRFLLECLADLDRQLKSHGGQLFIVQGSPISIFQKLKRELNFTKLCFEQDCEG-----------------V   66 (407)
Q Consensus         4 ~~~~~~~~r~~Fl~esL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~i~~V~~~~~~~~-----------------v   66 (407)
                      |++++|++|++||++||.+|+++|+++|++|+|+.|+|.++|++|+++++|++|++|++|++                 |
T Consensus        54 g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI  133 (537)
T 3fy4_A           54 GSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGV  133 (537)
T ss_dssp             BCSSCBHHHHHHHHHHHHHHHHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999999999999999999999999999999999999987                 5


Q ss_pred             eeEE-----------ecC--CCCCCCccCcchhHHHHhhhcCCCCCCC-CCCcccccccCCcchhHHhhhhccCCCCCCc
Q psy6304          67 KPYQ-----------SFP--TGSHPPRYQPCKTLLNFRDLSGLPPRPK-EDIDFRHVTFGTMSESLQREVSLFQTVPKPE  132 (407)
Q Consensus        67 ~~~~-----------i~~--~g~~~~~ftp~~~f~~~~~~~~~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~  132 (407)
                      .+++           |.+  ++++|.|||   +|++.+.+...+..|. +.|..  +...+...    ..... .+|+++
T Consensus       134 ~~~~~~~~~L~~p~~v~~~~~~~~y~vft---pf~k~~~~~~~~~~p~~~~p~~--~~~~~~~~----~~~~~-~~p~l~  203 (537)
T 3fy4_A          134 EVFSPVSHTLFNPAHIIEKNGGKPPLSYQ---SFLKVAGEPSCAKSELVMSYSS--LPPIGDIG----NLGIS-EVPSLE  203 (537)
T ss_dssp             EEECCCCSSSSCHHHHHHHTSSSCCSSHH---HHHHHHCCCTTTTCCCCCCCSC--CCCCCCCC----SSCCC-CCCCTT
T ss_pred             eEEEecCCEEEchhhcccCCCCCCCCccC---HHHHHHHhhcCCcCCCCCcccc--CCCccccc----ccccc-cCCcHH
Confidence            5554           222  466999999   8888886653212221 11110  11100000    00111 456777


Q ss_pred             cCCCCCCCCCCCCCCCCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCC-CCCCCCcCCcccccCcccHHHHHHHHH
Q psy6304         133 QFHKYPEMDFGDPLIRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPD-LTGPPTSQSAALKFGCLSVRRFYWALH  211 (407)
Q Consensus       133 ~lg~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~-~~~~tS~LSPyL~~G~IS~R~v~~~~~  211 (407)
                      ++++......  ....|+|||.+|+++|++|+  ..+.++.+|.+.++.+.. ..++||+|||||+|||||||+|++++.
T Consensus       204 ~l~~~~~~~~--~~~~~~~Ge~~A~~~L~~Fl--~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~  279 (537)
T 3fy4_A          204 ELGYKDDEQA--DWTPFRGGESEALKRLTKSI--SDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ  279 (537)
T ss_dssp             TTTCCGGGSS--CCCSCCCSHHHHHHHHHHHT--CCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHH
T ss_pred             hcCCCccccc--ccCCCCccHHHHHHHHHHHH--hCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHH
Confidence            7776432100  11358999999999999999  542358899988876643 136999999999999999999999998


Q ss_pred             HhhcccCCCCCCchhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhh
Q psy6304         212 DHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVM  291 (407)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaM  291 (407)
                      +....... ...+.++|++||+|||||+++++++|++...++++.+..++|+.     |++.|++|++|+||||||||||
T Consensus       280 ~~~~~~~~-~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~w~~-----~~~~~~aW~~G~TG~P~vDA~M  353 (537)
T 3fy4_A          280 NIYKDVKK-HTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNE-----DHAMLAAWRDGKTGYPWIDAIM  353 (537)
T ss_dssp             HHHHTTSC-CCCTTTSHHHHHHHHHHHHHHHHTCTTTTSSTTCTTSCCCCCBC-----CHHHHHHHHTTCSSCHHHHHHH
T ss_pred             HHHhhccc-ccccHHHHHHHHHHHHHHHHHHHHCcchhcccCChhhhcCCchh-----hhHHHHHHHcCCCCCHHHHHHH
Confidence            75432221 35667889999999999999999999999888999999999998     9999999999999999999999


Q ss_pred             HHHh---------------------------------------------------------hhhcCCCCCCcchhhhccC
Q psy6304         292 RQLR---------------------------------------------------------RLLDCTYCVCPVNFGRRLD  314 (407)
Q Consensus       292 RqL~---------------------------------------------------------~~~~y~RifNPv~Q~~~~D  314 (407)
                      |||+                                                         |. .|||||||++|++|||
T Consensus       354 rqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~D~a~n~g~Wqw~ag~g~d~-~~fRifNP~~Q~~kfD  432 (537)
T 3fy4_A          354 VQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFY-QFNRIYSPISFGKKYD  432 (537)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCC-CTTCCCCTTTTGGGTC
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHccccccccChHhhhhhcccCCCc-ccccccCHHHHHHHhC
Confidence            9999                                                         11 2799999999999999


Q ss_pred             CCCchhhhccccccCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-ccCCchHHHH
Q psy6304         315 PDGIYIKRYVPELRQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKANCI-INKDYPERIV  393 (407)
Q Consensus       315 p~G~fIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~~~-~~~~~~~~~~  393 (407)
                      |+|+|||+|||||++||+++||+||+++..+|+++||.+|.+||.|||||+++|++|+++|+++++... ..+.+++.-+
T Consensus       433 p~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~~~~~~~~~~~~~  512 (537)
T 3fy4_A          433 PDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKKMDGKVDEENL  512 (537)
T ss_dssp             TTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             CCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999877554 3447788999


Q ss_pred             HHHHHhhhhhcc
Q psy6304         394 NHVQASLENKQN  405 (407)
Q Consensus       394 ~~~~~~~~~~~~  405 (407)
                      +.++++++.+..
T Consensus       513 ~~~~~~~~~~~~  524 (537)
T 3fy4_A          513 RDLRRKLQKDEH  524 (537)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             ccccccccCCCC
Confidence            999999987654
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1np7a1279 a.99.1.1 (A:205-483) Cryptochrome C-terminal domai 6e-22
d1u3da1300 a.99.1.1 (A:198-497) Cryptochrome C-terminal domai 2e-21
d1dnpa1269 a.99.1.1 (A:201-469) C-terminal domain of DNA phot 2e-17
d1owla1271 a.99.1.1 (A:205-475) C-terminal domain of DNA phot 2e-16
d2j07a1234 a.99.1.1 (A:172-405) C-terminal domain of DNA phot 1e-08
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 279 Back     information, alignment and structure

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score = 92.7 bits (229), Expect = 6e-22
 Identities = 46/272 (16%), Positives = 79/272 (29%), Gaps = 57/272 (20%)

Query: 147 IRWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQ-SAALKFGCLSVRR 205
           + + GGET  L     RL                 +  +    +S+ S  L  GCLS R 
Sbjct: 6   LAFQGGETAGL----ARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRF 61

Query: 206 FYWALHDHFNTIHEGRPPSHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPW--- 262
            Y  +  +                 +L+WR++F  ++             +  N PW   
Sbjct: 62  IYQEVKRYEQERVSNDSTHWL--IFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQED 119

Query: 263 -----LPESHPNKEKYLNAWKN--GQTGY------------------------------- 284
                L  S       ++A       TG+                               
Sbjct: 120 QVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESC 179

Query: 285 -----PFIDAVMR----QLRRLLDCTYCVCPVNFGRRLDPDGIYIKRYVPELRQFPIQYI 335
                   +         +                ++ DP G Y++ ++PEL+  P   I
Sbjct: 180 LIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKI 239

Query: 336 YEPWKAPLGVQEKANCIISKDYPERIVNHVQA 367
           ++PW      Q++    +  DYP   VN  Q+
Sbjct: 240 HQPWLLSATEQKQWGVQLGVDYPRPCVNFHQS 271
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 271 Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1u3da1300 Cryptochrome C-terminal domain {Thale cress (Arabi 100.0
d1np7a1279 Cryptochrome C-terminal domain {Synechocystis sp., 100.0
d1dnpa1269 C-terminal domain of DNA photolyase {Escherichia c 100.0
d1owla1271 C-terminal domain of DNA photolyase {Synechococcus 100.0
d2j07a1234 C-terminal domain of DNA photolyase {Thermus therm 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 99.67
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 99.54
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 99.52
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 99.5
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 99.43
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.2e-64  Score=483.68  Aligned_cols=223  Identities=26%  Similarity=0.391  Sum_probs=196.9

Q ss_pred             CCCccHHHHHHHHHHHhhhhhhhccccccccCCCCCCCCCCCCcCCcccccCcccHHHHHHHHHHhhccc---C-CCCCC
Q psy6304         148 RWLGGETEALIKLNERLSQEIESFKSGVYLSNQVSPDLTGPPTSQSAALKFGCLSVRRFYWALHDHFNTI---H-EGRPP  223 (407)
Q Consensus       148 ~~~gGe~~A~~~L~~Fl~~~~~~~l~~Y~~~~~~~~~~~~~tS~LSPyL~~G~IS~R~v~~~~~~~~~~~---~-~~~~~  223 (407)
                      .|.+||.+|+++|++||  ..  .+.+|.+.++.+.  .++||+|||||+|||||+|+|++++.......   . .....
T Consensus        15 ~W~pGe~~A~~~L~~Fl--~~--~l~~Y~~~Rn~p~--~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~~~~~   88 (300)
T d1u3da1          15 AWSPGWSNGDKALTTFI--NG--PLLEYSKNRRKAD--SATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEE   88 (300)
T ss_dssp             HCCCSHHHHHHHHHHHH--TT--GGGGTTTTTTCSS--STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cCCccHHHHHHHHHHHH--Hh--hHHHHhhhcCCCC--ccCCccccHHHcCCCCCHHHHHHHHHHHHHhhhhhccccccc
Confidence            48999999999999999  65  3899988776653  46899999999999999999999986432110   0 00133


Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCCcccccCCccCCCCCCCCCCCCCcHHHHHHHhcCCCCchhhhHhhHHHh--------
Q psy6304         224 SHFNITGQLIWREYFYTMSAHNPYYDQMEKNPICLNIPWLPESHPNKEKYLNAWKNGQTGYPFIDAVMRQLR--------  295 (407)
Q Consensus       224 ~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~~~~~~~~W~~~~~~~d~~~~~aW~~G~TG~PlVDAaMRqL~--------  295 (407)
                      +.++|++||+|||||+++++++|.....+.++.++.+.|..     |++.+++|++|+||||+||||||||+        
T Consensus        89 ~~~~fi~eL~wRef~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr  163 (300)
T d1u3da1          89 SVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAV-----DENYFKAWRQGRTGYPLVDAGMRELWATGWLHDR  163 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCC-----CHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhcccccc-----CHHHHHHHHhhcccchHHHHHHHHHHhhchhHHH
Confidence            56789999999999999999999988888888888889998     99999999999999999999999999        


Q ss_pred             ------------------------------------------------hhhcCCCCCCcchhhhccCCCCchhhhccccc
Q psy6304         296 ------------------------------------------------RLLDCTYCVCPVNFGRRLDPDGIYIKRYVPEL  327 (407)
Q Consensus       296 ------------------------------------------------~~~~y~RifNPv~Q~~~~Dp~G~fIr~wvPEL  327 (407)
                                                                      +..+|+|||||++|+++|||+|.|||+|||||
T Consensus       164 ~Rm~vaSfl~~~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL  243 (300)
T d1u3da1         164 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL  243 (300)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHhccchhhHHHHHHHHHhcccchhhccccccHHHHHHHhcCcchHHHHhChhh
Confidence                                                            12357899999999999999999999999999


Q ss_pred             cCCCCCceecCCCCChHHHhhccCccCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy6304         328 RQFPIQYIYEPWKAPLGVQEKANCIISKDYPERIVNHVQASLENKQYLKKEKAN  381 (407)
Q Consensus       328 ~~lp~~~Ih~Pw~~~~~~~~~~~~~~g~~YP~PIVd~~~~r~~a~~~~~~~~~~  381 (407)
                      ++||+++||+||++|..+|+.+||.+|.+||.|||||+++|++|+++++.+.+.
T Consensus       244 ~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~~  297 (300)
T d1u3da1         244 SRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL  297 (300)
T ss_dssp             TTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHhCCcccCCHHHHHHcCCccCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987653
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure