Psyllid ID: psy6337

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------
DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADELRSNEKQEHKRV
ccccEEEEEEHHHHcccccccccccccccccccccccHHHHHHHHcccccccHHHcHHHHHHHHHHHHcccccccccccccccccccEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHccccccEEcccccEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccHHHHHccccccccccccccccEEEEEEcccccccccccccccEEEEEEcccccccEEEEEEEEEEEccEEEEEEEEEEEEEEccccEEEEEEcHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHcccccccccccccccEEEEEccccccccccccccccccccccccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHcHHHHHccccEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccEEEEEHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEccccccHHHHHHHHHHccccEcHHHHHHHHHHHHHHHHHHccccccHHHHEEEccccccccccEEEccccccEcccccccccEEEEEEEEcccEEEEEccccHccccccccEHHHHcccccEEEEEccccEEEccccccccEEEEEEEccccccEEEEEEEcccccccEEEEEEEEEcEEEEcccEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHHcHHHcccccccccHcEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHcccEEEEcccccccEEEEEEEcccccccEEEEccccEcccccccEEEEEEcHHHHHHHcEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHEEcHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEcHHHHHccccHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
DRNDLIEIWNIVFIShkrvsadtivplsknyidtglGFERLVTILQnktstydtdlFLPLLETIEKvsgakpygrtfttsnrtdldtsYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWkplvktqpeleqfnimeepglvLGVKYLTKqlardpsiteisgdMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSkakaasnvpdidlmdlkhfpvtddkykydyhydtnskrytfpcldtnlvgivigdqvfcidkhairharsgasidsIQLEHNAWVGLifdktnlyataggqiddIGVAYLtnttqengkVEIGELASLEGKIVHFGNVvssfkvtpgltsrVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYqkscrvfsdecaldfsvygetlsvDSVAAVEKYINDVIADQVQvdrrhmraselpslthltvipgeiypddvilidisdkenvisrepccgthvfntghiesctvigyksynhgvrsikcltgessKAAVENGKQLSAAVKQLAATINqnseqtdeETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDaveiqalpplsqiskPVLVLLYSLGelkarayvppqcttpgfnaqawltpimdraegkgvsskgsdvqhlysmnpvkisNNVEDLVKQLVDIARRSADELRSNekqehkrv
DRNDLIEIWNIVfishkrvsadtivPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEkvsgakpygrtfttsnrtdldtsYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLIsedvfkvkqgklvKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKplvktqpeleqfnimeepgLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELkerskakaasnvpdidlmdlkhfpvtdDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFgnvvssfkvtpgltsrVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRaselpslthltvipgeiYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQnseqtdeetlnQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEEliekckedtpyLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSadelrsnekqehkrv
DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTddkykydyhydTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADELRSNEKQEHKRV
****LIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ*****************PDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTG*********************************************LRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMD****************LYSMNPVKISNNVEDLVKQLVDI*******************
DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKY****************DMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQ***********************DLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQL**********************************************************QFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEG*G******************ISNNVEDLVKQLVDIARRSAD*************
DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELK********SNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQ************QNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAE**********VQHLYSMNPVKISNNVEDLVKQLVDIARRSAD*************
**NDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADELRSNE*******
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DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAAxxxxxxxxxxxxxxxxxxxxxSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLEDDLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISKPVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSADELRSNEKQEHKRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query797 2.2.26 [Sep-21-2011]
Q9VRJ11012 Alanine--tRNA ligase, mit yes N/A 0.951 0.749 0.314 3e-99
Q9VLM8966 Alanine--tRNA ligase, cyt no N/A 0.769 0.634 0.281 8e-67
O01541968 Alanine--tRNA ligase, cyt yes N/A 0.853 0.702 0.269 4e-65
Q14CH7980 Alanine--tRNA ligase, mit no N/A 0.868 0.706 0.269 7e-63
D3ZX08985 Alanine--tRNA ligase, mit no N/A 0.855 0.692 0.265 3e-58
P364281003 Alanine--tRNA ligase OS=A yes N/A 0.643 0.511 0.285 5e-57
O13914959 Alanine--tRNA ligase OS=S yes N/A 0.668 0.555 0.263 4e-55
Q5A8K2969 Alanine--tRNA ligase OS=C N/A N/A 0.654 0.538 0.273 2e-54
Q5AQL1961 Alanine--tRNA ligase OS=E yes N/A 0.687 0.570 0.271 5e-54
O34526878 Alanine--tRNA ligase OS=B yes N/A 0.687 0.624 0.276 4e-51
>sp|Q9VRJ1|SYAM_DROME Alanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster GN=Aats-ala-m PE=2 SV=1 Back     alignment and function desciption
 Score =  363 bits (932), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 257/818 (31%), Positives = 414/818 (50%), Gaps = 60/818 (7%)

Query: 2    RNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLL 61
            R+DL E+WN+VFI + R +  +I  L  +++DTG+GFERL  +LQNK+S YDTDLF P+ 
Sbjct: 215  RSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGFERLTAVLQNKSSNYDTDLFTPIF 274

Query: 62   ETIEKVSGAKPYGRTFT-TSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVR 120
            + I++ +    Y  +F    N   LDTSYR+L+D++RM+T  LAD M PD   KLR V+R
Sbjct: 275  DGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHARMVTACLADGMLPDQNQKLRRVLR 334

Query: 121  DALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKA 180
             AL ISE VF     KL+ +L   + E LG+ YPE+      +  ++  E  ++ NLR++
Sbjct: 335  KALNISEHVF--AHDKLLTQLVPIVVETLGEAYPEMAAKQQAVIDLICHEQEVYKNLRES 392

Query: 181  AVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGL 240
            + K +  ++   P L+  ++ME PG V   + L  Q  +  + T I GD  + L DTYGL
Sbjct: 393  SSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQRCKFSNNT-IPGDFLYKLTDTYGL 451

Query: 241  SKNIIQELAAAKKLTLCHEAF--EQKLNELKERSKAKAASNVPDIDL-----------MD 287
            ++    +LA  + +    E +  E  L +LK +   +  +     DL           M 
Sbjct: 452  TEESFLKLAELENMNCDLERYRAEVSLAKLKAKGNQRETAGGSLCDLATEQRIAEAQAML 511

Query: 288  LKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASID 347
             K    TD+ +KY Y +D  S  Y  P L T ++G+++ D            +R+  S  
Sbjct: 512  TKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVLGMLLNDAEV---------SRTQGS-- 560

Query: 348  SIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQEN--GKVEIGELASLEGKIV 405
             IQ      + ++   +N Y  +GGQ  D G   ++N  Q +    +++  +  L   +V
Sbjct: 561  RIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVSNHQQPDHPHSLDVIGVKHLNDCVV 620

Query: 406  HFGNVVS---SFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCR 461
            H   + S   +F++  G    ++VDA+ R      HT +HLLNAA+R +    TYQ S  
Sbjct: 621  HICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAAIRSLFKKVTYQVSSS 680

Query: 462  VFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPG 521
            V SD+C L+  + G+ +    V  +E  IN VI     V+ + + A+E+     +T++PG
Sbjct: 681  VSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSAAPVEVQLLSAAEVLEQNDITMVPG 740

Query: 522  EIYPDDVI-LIDISDKE-NVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTG 579
            E+YP+  + L+++   E  + S+E CCGTH  NT  +    ++  K  N    +   + G
Sbjct: 741  EVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNLKQTNRARFAFTAVAG 800

Query: 580  ESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRE-LLEDD--LPYA 636
            ++++  ++    L   V  L     +   QTD+ T N    E++T+R  +L  D  LPYA
Sbjct: 801  QAAENVLKTAALLRHRVDLL-----EKQFQTDKLT-NATEAELQTIRHNMLHTDIKLPYA 854

Query: 637  VHKQNDHLLAELSKNVK----LKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAV--EI 690
                    + E+ K +K      L++F  V +   L EK  +  P+++HYI   A+  EI
Sbjct: 855  FKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYITSSALVEEI 914

Query: 691  QALPPLSQISK-----PVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKG 745
                PL + +K     P+LV+      +KAR  VP +C T  FNA AWL    D   G+ 
Sbjct: 915  ----PLQRATKLCPDRPILVISVCDSVVKARCCVPEKCITEKFNASAWLQSFADTFNGQI 970

Query: 746  VSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSA 783
             + KG + Q + +M   ++SN  E+ ++Q +  A   A
Sbjct: 971  AAPKGQNPQAVCNMKGRRVSNLFEEQLEQAMSKAHAYA 1008
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-ala PE=2 SV=1 Back     alignment and function description
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=aars-2 PE=2 SV=1 Back     alignment and function description
>sp|Q14CH7|SYAM_MOUSE Alanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Aars2 PE=2 SV=1 Back     alignment and function description
>sp|D3ZX08|SYAM_RAT Alanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Aars2 PE=2 SV=1 Back     alignment and function description
>sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 Back     alignment and function description
>sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1 Back     alignment and function description
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5AQL1|SYA_EMENI Alanine--tRNA ligase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ala1 PE=3 SV=2 Back     alignment and function description
>sp|O34526|SYA_BACSU Alanine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=alaS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query797
307176881 1005 Alanyl-tRNA synthetase, cytoplasmic [Cam 0.933 0.740 0.338 1e-116
322795678 1018 hypothetical protein SINV_04921 [Solenop 0.961 0.752 0.324 1e-115
307212580 1019 Alanyl-tRNA synthetase, cytoplasmic [Har 0.961 0.751 0.325 1e-110
332026963 1085 Alanyl-tRNA synthetase, cytoplasmic [Acr 0.959 0.705 0.325 1e-108
91087359 1044 PREDICTED: similar to mitochondrial alan 0.942 0.719 0.328 1e-107
270010617 977 hypothetical protein TcasGA2_TC010044 [T 0.942 0.768 0.329 1e-107
383852979 1007 PREDICTED: alanine--tRNA ligase, mitocho 0.944 0.747 0.314 1e-106
195491933 1012 GE21485 [Drosophila yakuba] gi|194179878 0.954 0.751 0.315 1e-101
380017803861 PREDICTED: alanine--tRNA ligase, mitocho 0.771 0.714 0.344 1e-101
340728025882 PREDICTED: LOW QUALITY PROTEIN: alanyl-t 0.808 0.730 0.337 1e-101
>gi|307176881|gb|EFN66222.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 264/781 (33%), Positives = 424/781 (54%), Gaps = 37/781 (4%)

Query: 4   DLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLET 63
           DL+E+WNIVFI ++R++  +IVPLSK+++DTG+GFERLVT LQ K S YDTDLF PL + 
Sbjct: 219 DLMELWNIVFIQYERLANGSIVPLSKHHVDTGMGFERLVTFLQGKKSNYDTDLFQPLFDA 278

Query: 64  IEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVRDAL 123
           I+K S A  Y  TF   +   LD  YR+L+D++RM+TVALADNM P+   KLR ++R+A+
Sbjct: 279 IQKHSNAPNYKGTFDNDDTGKLDYGYRILADHTRMVTVALADNMLPEEQKKLRRILRNAI 338

Query: 124 LISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVK 183
            + E +F  K G +V EL+Y +A+ L   YPE+ +++ ++Q I+  E  +F  LR  + K
Sbjct: 339 NVGEKIFH-KSG-IVTELAYTVADNLDAAYPELHNNLKQVQRIIDFEEDLFKRLRNTSGK 396

Query: 184 EWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKN 243
           +W  +++ +PEL        PGLV G K L   L        +SG +AF LYDTYGL+  
Sbjct: 397 KWSKMIEIRPELASITDWMAPGLVDGYKELQSMLKELRKTNILSGTVAFKLYDTYGLNSE 456

Query: 244 IIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNV----PDIDLMDLKHFPVTDDKYK 299
            I ELA  + L      FE++L+  + +SK     N       +++++  H P T+D +K
Sbjct: 457 TIAELAEIESLHFDEIDFEKQLDNHRYQSKIGLDKNSILTKESLEILEKDHVPKTNDSFK 516

Query: 300 YDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGL 359
           Y+Y Y+ N+    FP L++ L+GI+I  ++       I   R   ++  I    +  +G+
Sbjct: 517 YNYTYNGNNYE--FPALNSKLIGIIINGEL------VINKTRKTINVKEIYNSTDE-IGI 567

Query: 360 IFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVV------SS 413
           I DKT  Y++ GGQ+ DIG     N + +N    I  +  + G ++H G         S 
Sbjct: 568 ILDKTVCYSSEGGQVSDIG-----NISIKNLFFNIDNVIKINGYVIHSGYFAKIDLPTSE 622

Query: 414 FKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLTCTYQKSCRVFSDECALDFSV 473
             +  G    V ++  +R+G M+ HT +HLLNAAL++V+   YQ S  V +D     F+ 
Sbjct: 623 LYLQIGDDCLVNIEPNIRIGAMKHHTATHLLNAALKQVMQVVYQSSSTVNADNLKFQFNS 682

Query: 474 YGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDI 533
           +GE L++D +  +E  IN++I  +  +    +   EL     +T+IPGEIYP   I +  
Sbjct: 683 FGEQLTLDQMRIIEHCINNIIQTRAAITVETLNLLELLKQDDITLIPGEIYPYTGIKVIE 742

Query: 534 SDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLS 593
            +  N+ S+E CCGTHV NT  ++    + Y S     R++K + G+ +    + G+++S
Sbjct: 743 INANNLKSKETCCGTHVHNTSVLQHFCFLTYTSKGTTKRTVKAIVGQEALRMKQAGERIS 802

Query: 594 AAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLED----DLPYAVHKQNDHLLAELS 649
             + +L  T+  N     + T  Q   EI  +++ + D     LPY + ++    L  L+
Sbjct: 803 QRIAELEETLKSN-----KFTYEQFQEEINRIKQEINDPNIQTLPYLIKEKCLTSLENLN 857

Query: 650 KNVKLKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQALPPLSQISK-PVLVLLY 708
           K + L+ ++  K  I  E I    + + ++VH +  +   +     +S  SK P+LVL  
Sbjct: 858 KAIWLQEKENEKASIIRE-ITNTLDSSCFIVHCLNKNPTYLSLHEVISPFSKVPILVLSI 916

Query: 709 SLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNV 768
           +   +KAR  VP +  +  FNAQ W+  I+    GK  S KG     + SM  +++S + 
Sbjct: 917 TNRSVKARCSVPQEIVSKAFNAQTWMDVILQIFNGKQGSIKGFKPMLVASMKSIQVSQDF 976

Query: 769 E 769
           +
Sbjct: 977 Q 977

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322795678|gb|EFZ18357.1| hypothetical protein SINV_04921 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307212580|gb|EFN88295.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332026963|gb|EGI67059.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91087359|ref|XP_975627.1| PREDICTED: similar to mitochondrial alanyl-tRNA synthetase CG4633-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270010617|gb|EFA07065.1| hypothetical protein TcasGA2_TC010044 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383852979|ref|XP_003702002.1| PREDICTED: alanine--tRNA ligase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|195491933|ref|XP_002093777.1| GE21485 [Drosophila yakuba] gi|194179878|gb|EDW93489.1| GE21485 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|380017803|ref|XP_003692834.1| PREDICTED: alanine--tRNA ligase, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|340728025|ref|XP_003402333.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query797
FB|FBgn00289621012 Aats-ala-m "mitochondrial alan 0.953 0.750 0.306 3.9e-92
WB|WBGene00000197968 aars-2 [Caenorhabditis elegans 0.647 0.533 0.259 1.9e-56
FB|FBgn0027094966 Aats-ala "Alanyl-tRNA syntheta 0.217 0.179 0.401 4.5e-56
MGI|MGI:2681839980 Aars2 "alanyl-tRNA synthetase 0.510 0.415 0.274 5.2e-56
MGI|MGI:2384560968 Aars "alanyl-tRNA synthetase" 0.212 0.174 0.410 1.8e-55
UNIPROTKB|F1P5J5916 AARS "Uncharacterized protein" 0.217 0.188 0.395 1.5e-54
UNIPROTKB|P49588968 AARS "Alanine--tRNA ligase, cy 0.212 0.174 0.398 2.9e-54
RGD|1304832968 Aars "alanyl-tRNA synthetase" 0.212 0.174 0.410 3.4e-54
UNIPROTKB|F1PA93985 AARS2 "Uncharacterized protein 0.212 0.171 0.398 1.9e-53
ZFIN|ZDB-GENE-030131-3663991 aars "alanyl-tRNA synthetase" 0.217 0.174 0.389 1.9e-53
FB|FBgn0028962 Aats-ala-m "mitochondrial alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 250/816 (30%), Positives = 410/816 (50%)

Query:     2 RNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLL 61
             R+DL E+WN+VFI + R +  +I  L  +++DTG+GFERL  +LQNK+S YDTDLF P+ 
Sbjct:   215 RSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGFERLTAVLQNKSSNYDTDLFTPIF 274

Query:    62 ETIEKVSGAKPYGRTFTTS-NRTDLDTSYRMLSDYSRMITVALADNMFPDATAKLRNVVR 120
             + I++ +    Y  +F    N   LDTSYR+L+D++RM+T  LAD M PD   KLR V+R
Sbjct:   275 DGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHARMVTACLADGMLPDQNQKLRRVLR 334

Query:   121 DALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKA 180
              AL ISE VF     KL+ +L   + E LG+ YPE+      +  ++  E  ++ NLR++
Sbjct:   335 KALNISEHVFA--HDKLLTQLVPIVVETLGEAYPEMAAKQQAVIDLICHEQEVYKNLRES 392

Query:   181 AVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGL 240
             + K +  ++   P L+  ++ME PG V   + L  Q  +  + T I GD  + L DTYGL
Sbjct:   393 SSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQRCKFSNNT-IPGDFLYKLTDTYGL 451

Query:   241 SKNIIQELAAAKKLTLCHEAF--EQKLNELKERSKAKAASNVPDIDLMDLKHFPVTXXXX 298
             ++    +LA  + +    E +  E  L +LK +   +  +     DL   +         
Sbjct:   452 TEESFLKLAELENMNCDLERYRAEVSLAKLKAKGNQRETAGGSLCDLATEQRIAEAQAML 511

Query:   299 XXXXXXXTNSKRYTF-----------PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASID 347
                     NS +YT+           P L T ++G+++ D            +R+  S  
Sbjct:   512 TKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRVLGMLLNDAEV---------SRTQGS-- 560

Query:   348 SIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENG--KVEIGELASLEGKIV 405
              IQ      + ++   +N Y  +GGQ  D G   ++N  Q +    +++  +  L   +V
Sbjct:   561 RIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVSNHQQPDHPHSLDVIGVKHLNDCVV 620

Query:   406 HFGNVVS---SFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVLT-CTYQKSCR 461
             H   + S   +F++  G    ++VDA+ R      HT +HLLNAA+R +    TYQ S  
Sbjct:   621 HICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAAIRSLFKKVTYQVSSS 680

Query:   462 VFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPG 521
             V SD+C L+  + G+ +    V  +E  IN VI     V+ + + A+E+     +T++PG
Sbjct:   681 VSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSAAPVEVQLLSAAEVLEQNDITMVPG 740

Query:   522 EIYPDDVI-LIDISDKE-NVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTG 579
             E+YP+  + L+++   E  + S+E CCGTH  NT  +    ++  K  N    +   + G
Sbjct:   741 EVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNLKQTNRARFAFTAVAG 800

Query:   580 ESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRE-LLEDD--LPYA 636
             +    A EN  + +A ++     + +   QTD+ T N    E++T+R  +L  D  LPYA
Sbjct:   801 Q----AAENVLKTAALLRHRVDLLEKQF-QTDKLT-NATEAELQTIRHNMLHTDIKLPYA 854

Query:   637 VHKQNDHLLAELSKNVK----LKLRQFAKVRITEELIEKCKEDTPYLVHYIRDDAVEIQA 692
                     + E+ K +K      L++F  V +   L EK  +  P+++HYI   A+ ++ 
Sbjct:   855 FKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYITSSAL-VEE 913

Query:   693 LPPLSQISK-----PVLVLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVS 747
             +P L + +K     P+LV+      +KAR  VP +C T  FNA AWL    D   G+  +
Sbjct:   914 IP-LQRATKLCPDRPILVISVCDSVVKARCCVPEKCITEKFNASAWLQSFADTFNGQIAA 972

Query:   748 SKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSA 783
              KG + Q + +M   ++SN  E+ ++Q +  A   A
Sbjct:   973 PKGQNPQAVCNMKGRRVSNLFEEQLEQAMSKAHAYA 1008
GO:0005739 "mitochondrion" evidence=ISS
GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS
GO:0004813 "alanine-tRNA ligase activity" evidence=ISS;NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
WB|WBGene00000197 aars-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0027094 Aats-ala "Alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2681839 Aars2 "alanyl-tRNA synthetase 2, mitochondrial (putative)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PA93 AARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3663 aars "alanyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VRJ1SYAM_DROME6, ., 1, ., 1, ., 70.31410.95100.7490yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.7LOW CONFIDENCE prediction!
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query797
PLN02900936 PLN02900, PLN02900, alanyl-tRNA synthetase 5e-86
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 9e-83
PRK00252865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 3e-78
TIGR00344851 TIGR00344, alaS, alanine--tRNA ligase 5e-77
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 2e-58
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-31
TIGR03683902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 1e-26
PRK13902900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 5e-24
COG2872241 COG2872, COG2872, Predicted metal-dependent hydrol 2e-15
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 5e-12
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 4e-10
pfam0797344 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt 4e-05
PLN02961223 PLN02961, PLN02961, alanine-tRNA ligase 4e-05
smart0086343 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn 5e-04
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score =  292 bits (750), Expect = 5e-86
 Identities = 218/796 (27%), Positives = 354/796 (44%), Gaps = 122/796 (15%)

Query: 1   DRNDLIEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPL 60
           D    IEIWN+VFI   R +  ++ PL   ++DTG+G ERL +ILQNK S YDTDLF+P+
Sbjct: 210 DDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPI 269

Query: 61  LETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LRN 117
            + I++ +GA+PY       +   +D +YR+++D+ R ++ A+AD + P    +   LR 
Sbjct: 270 FDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRR 329

Query: 118 VVRDALLISEDVFKVKQG---KLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIF 174
           ++R A+     +   ++G    LV+ +     E+ GDV+PE++ +  +I  I+ EE   F
Sbjct: 330 LLRRAVRYGRLLLGAEEGFFPALVEVV----VELSGDVFPEVKKNEKRITEIIAEEELSF 385

Query: 175 DNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQL--ARDPSITEISGDMAF 232
                          KT              L  G++   K L  A+      +SG  AF
Sbjct: 386 --------------GKT--------------LEKGIEKFKKALAAAKANGGPVLSGKDAF 417

Query: 233 TLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK-AKAASNVPDIDL------ 285
            LYDTYG   ++ + +A  + +T+  E FE  + E +ERS+ A   +    I+L      
Sbjct: 418 LLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATS 477

Query: 286 -MDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGA 344
            +  +    TDD  KYD+  D  +           +  I+ G                G 
Sbjct: 478 WLQKQGVAATDDFLKYDWLSDHEAV----------VKAILTG----------------GG 511

Query: 345 SIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKI 404
            ++S+       VG++ DKT+ YA +GGQI D GV   +        VE+ ++    G +
Sbjct: 512 FVESVSEGDE--VGIVLDKTSFYAESGGQIGDTGVLEGSG----GAVVEVSDVQKAGGFV 565

Query: 405 VHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVF 463
           +H G  V+   V+ G     +VD   R      HT +HLLN+AL+ VL     QK   V 
Sbjct: 566 LHIG-TVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVA 624

Query: 464 SDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEI 523
            ++   DFS +G+ ++ + +  VE  +N+ I D + V+ + M  ++   +  L  + GE 
Sbjct: 625 FEKLRFDFS-HGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEK 683

Query: 524 YPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGESSK 583
           YPD V ++ +       S E C GTHV NT   E+  ++  +    G+R I  +TG    
Sbjct: 684 YPDPVRVVSVGGV---YSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGG--- 737

Query: 584 AAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLE------DDLPYAV 637
           AAVE      +  ++L +     + + +   L ++   +K+  +         +++   V
Sbjct: 738 AAVEAINAADSLERELDS-----ALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARV 792

Query: 638 HKQNDHLLAELSKNVKLKLRQFAKVRITEELIEKCKED-TPYLVHYIRDDAVEIQALPP- 695
                 L A  ++     LR    V    EL  K        LV  + D  V+  AL   
Sbjct: 793 SALQKELRA--AQKEAAALRAKLAVAKATELASKALSAGKSVLVARL-DVGVDAAALKEA 849

Query: 696 ----LSQISKPVLVLLYSLGELKAR----AYVPPQCTTPGFNAQAWLTPIMDRAEGKGVS 747
               ++++  P  V+L S  E K +    A VPP     G  A  WL  I  +  G G  
Sbjct: 850 AEKVIAKLGDPAAVVL-SSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAI-AKLCGGGGG 907

Query: 748 SK-------GSDVQHL 756
            K       G D + L
Sbjct: 908 GKPGFAQGQGRDAEKL 923

Length = 936
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase Back     alignment and domain information
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 797
COG0013879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
KOG0188|consensus895 100.0
PLN02900936 alanyl-tRNA synthetase 100.0
TIGR00344851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252865 alaS alanyl-tRNA synthetase; Reviewed 100.0
TIGR03683902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902900 alaS alanyl-tRNA synthetase; Provisional 100.0
PRK01584594 alanyl-tRNA synthetase; Provisional 100.0
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
PLN02961223 alanine-tRNA ligase 100.0
COG2872241 Predicted metal-dependent hydrolases related to al 100.0
KOG2105|consensus415 100.0
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 99.76
PLN02837 614 threonine-tRNA ligase 99.75
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 99.72
PRK12444 639 threonyl-tRNA synthetase; Reviewed 99.65
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 99.58
PLN02908 686 threonyl-tRNA synthetase 99.47
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 99.41
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.22
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 99.15
PF0227268 DHHA1: DHHA1 domain; InterPro: IPR003156 This doma 97.48
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 96.54
KOG1637|consensus 560 93.93
PRK09348283 glyQ glycyl-tRNA synthetase subunit alpha; Validat 81.76
TIGR00388293 glyQ glycyl-tRNA synthetase, tetrameric type, alph 81.09
cd00733279 GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( 80.89
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-157  Score=1367.35  Aligned_cols=669  Identities=27%  Similarity=0.444  Sum_probs=580.8

Q ss_pred             CCCCeEEEeeeeeeeeccC-CCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCCCCCCcccC
Q psy6337           1 DRNDLIEIWNIVFISHKRV-SADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAKPYGRTFTT   79 (797)
Q Consensus         1 d~p~~lEiWNlVFmQy~r~-~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~~y~g~~~~   79 (797)
                      |++|||||||||||||||+ .+|+|.|||+||||||||||||+|||||+|||||||+|.|||+.+++++|. .|..    
T Consensus       193 d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~~----  267 (879)
T COG0013         193 DGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYGE----  267 (879)
T ss_pred             CCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCCc----
Confidence            6899999999999999999 799999999999999999999999999999999999999999999999986 4532    


Q ss_pred             CCCCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhh
Q psy6337          80 SNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEI  156 (797)
Q Consensus        80 ~~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel  156 (797)
                       +...++++|||||||+||++|||+||++|||+   ||||||||||+||+++|+...  |||++|||++++.|+++||||
T Consensus       268 -~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~--~fl~~LV~~~~~~m~~~ypel  344 (879)
T COG0013         268 -DEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKE--PFLYKLVDTVIDEMGDAYPEL  344 (879)
T ss_pred             -cccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHHhhhcHHH
Confidence             22334789999999999999999999999999   599999999999999998877  799999999999999999999


Q ss_pred             hhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhHHHHHHHHHhcCCCCCccChhhhhhhhc
Q psy6337         157 QDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYD  236 (797)
Q Consensus       157 ~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g~~~l~~~~~~~~~~~~l~g~~af~Lyd  236 (797)
                      .++++.|+++|+.||++|.+                            ||++|+++|++.+++.++++.|||++||+|||
T Consensus       345 ~~~~~~I~~vl~~EEe~F~~----------------------------TL~~G~~l~~~~~~~~~~~~~l~ge~afkLYD  396 (879)
T COG0013         345 KEKEDFIKEVLKLEEERFAK----------------------------TLERGLKLLEKELAKLKKSKTLDGEDAFKLYD  396 (879)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHhhccCCccChHHheeehh
Confidence            99999999999999999988                            57778899999888766447899999999999


Q ss_pred             cCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhcCC--Ccchhhhc-ccCCCCCCCCCcceeeecCCCCcccc
Q psy6337         237 TYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASN--VPDIDLMD-LKHFPVTDDKYKYDYHYDTNSKRYTF  313 (797)
Q Consensus       237 TyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~--~~~~~~~~-~~~~~~T~~~~ky~~~y~~~~~~Y~~  313 (797)
                      |||||+|||++||+++|++||+++|+.+|++||++||+.+...  ......+. ....++|      +|.      +|+.
T Consensus       397 TyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~~~~~~~~~~~~~~~~~~~~~t------ef~------gY~~  464 (879)
T COG0013         397 TYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASAGSGEGAKESEDLELIDKLPET------EFL------GYDD  464 (879)
T ss_pred             cCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhccccccccchhhhhhhhccCCCc------eee------eccc
Confidence            9999999999999999999999999999999999998753111  00111111 1123444      333      5677


Q ss_pred             cccceEEEEEEECCeeeecccccccccccCccccchhccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEE
Q psy6337         314 PCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVE  393 (797)
Q Consensus       314 ~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~  393 (797)
                      +.++++|++|+.++..       |+++.           +|+.++||||+||||||||||++|+|+|..+++    ..|.
T Consensus       465 ~~~~~~i~~l~~~~~~-------v~~~~-----------~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~----~~~~  522 (879)
T COG0013         465 LEMEFKVLVLFVDGKE-------VSELN-----------EGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGG----GRFE  522 (879)
T ss_pred             ccceEEEEEEEecCcc-------ccccc-----------CCceEEEEEecCCccCCCCCccCceEEEEecCC----cEEE
Confidence            7889999999987753       44444           688899999999999999999999999998642    5899


Q ss_pred             EEEEEEeC-CEEEEEEEeecCcccCCCCeEEEEechhhhHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEe
Q psy6337         394 IGELASLE-GKIVHFGNVVSSFKVTPGLTSRVEVDARMRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDF  471 (797)
Q Consensus       394 V~dv~~~~-g~i~H~~~~~~~~~l~~G~~V~~~VD~~rR~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df  471 (797)
                      |.||||.+ +.++|.+.... |.|++|+.|.+.|||+||..+|+||||||||++|||++| +|++|+||+++++++||||
T Consensus       523 V~dvqK~~~~~~vH~~~~~~-G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDf  601 (879)
T COG0013         523 VTDVQKVGNGVIVHKGKVES-GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDF  601 (879)
T ss_pred             EEEEEEcCCceEEEEEeecc-CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEee
Confidence            99999997 89999999864 689999999999999999999999999999999999999 9999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCcccccccccccccCCCcCCCcEEEEEeCCCCccccCCCcccCccC
Q psy6337         472 SVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASELPSLTHLTVIPGEIYPDDVILIDISDKENVISREPCCGTHVF  551 (797)
Q Consensus       472 ~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~eA~~~~g~~~~~ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~  551 (797)
                      +|+ +++|.|+|.+||++||++|++|+||.+.+|++++|++. |++++|||+||+.||||+||+    +|+|+||||||.
T Consensus       602 sH~-~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig~----~SvElCGGTHv~  675 (879)
T COG0013         602 SHY-KALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIGD----FSVELCGGTHVS  675 (879)
T ss_pred             cCC-CCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEECC----ceeeccCCcccC
Confidence            987 79999999999999999999999999999999999777 999999999999999999999    999999999999


Q ss_pred             CccccccEEEeeeecccCCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHhHHHHHHHHHHHHhh
Q psy6337         552 NTGHIESCTVIGYKSYNHGVRSIKCLTGESSKAAVENGKQLSAAVKQLAATINQNSEQTDEETLNQQNHEIKTLRELLED  631 (797)
Q Consensus       552 nTgeIg~fkIl~~~~~~~gv~RI~~vtG~~A~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~l~~~l~~  631 (797)
                      |||+||.|||++++++++|+|||+|+||..|++++++.++++.+++   ..++. +        .++..++.        
T Consensus       676 ~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a---~~lk~-~--------~~~~~kv~--------  735 (879)
T COG0013         676 NTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIA---SLLKV-P--------PELLPKVE--------  735 (879)
T ss_pred             CccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHH---HHhCC-C--------hhHHHHHH--------
Confidence            9999999999999999999999999999999999999998887655   44442 1        11222343        


Q ss_pred             cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCEEEEEEc-CCHHHHhccCccccC---CCcEE
Q psy6337         632 DLPYAVHKQNDHLLAELSKNVKLKLRQFAKVRITEELIEK---CKEDTPYLVHYIR-DDAVEIQALPPLSQI---SKPVL  704 (797)
Q Consensus       632 ~i~~~~k~~l~~~l~~l~k~i~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~~~~-~~~~~L~~~~~~~~~---~~~v~  704 (797)
                              .|.+++++++|++.+++++++......+....   ++++.++++..++ .+++.|+.++..++.   +.+++
T Consensus       736 --------~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~viv  807 (879)
T COG0013         736 --------RLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIV  807 (879)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEecCCCHHHHHHHHHHHHhhcCCcEEE
Confidence                    46666788888888888766655555544332   5889999998888 588889887765543   44555


Q ss_pred             EEEeeCCeEEEEEecCCCCCCCCcCHHHHHHHHHhhcCCccCCCCCCccccccccccccccccchHHHHHHHHHHHHHHH
Q psy6337         705 VLLYSLGELKARAYVPPQCTTPGFNAQAWLTPIMDRAEGKGVSSKGSDVQHLYSMNPVKISNNVEDLVKQLVDIARRSAD  784 (797)
Q Consensus       705 l~s~~~~kv~~~~~v~~~~~~~~~~A~~~~k~v~~~~gGkGGG~~g~~~~~~aqg~g~~~~~~~~~~l~~Al~~A~~fa~  784 (797)
                      +++..++|+.++|++++++ ..+++|++|+++++..+||||||+    | .+|||+|+++     ..+++|++.+..|.+
T Consensus       808 l~~~~~~Kv~~~~~v~~~~-~~~~~a~~lvk~la~~~gG~GGGr----~-d~Aqggg~d~-----~~~~~al~~~~~~i~  876 (879)
T COG0013         808 LASVADGKVSLVVAVSKDL-TDKVKAGELVKELAAIVGGKGGGR----P-DMAQGGGKDP-----EKLDEALELVIEWVK  876 (879)
T ss_pred             EEEecCCeEEEEEEechhh-hcccCHHHHHHHHHHhcCCCCCCc----h-hhheeCCCCc-----ccHHHHHHHHHHHHH
Confidence            6677778999999999655 455999999999999999999986    3 5899999997     789999999998876


Q ss_pred             h
Q psy6337         785 E  785 (797)
Q Consensus       785 ~  785 (797)
                      .
T Consensus       877 ~  877 (879)
T COG0013         877 E  877 (879)
T ss_pred             h
Confidence            4

>KOG0188|consensus Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>KOG2105|consensus Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit Back     alignment and domain information
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query797
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 2e-27
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 2e-27
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 5e-25
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 3e-22
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 2e-21
2zzf_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 5e-16
2zze_A752 Crystal Structure Of Alanyl-Trna Synthetase Without 5e-09
2ztg_A739 Crystal Structure Of Archaeoglobus Fulgidus Alanyl- 5e-05
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 137/279 (49%), Gaps = 54/279 (19%)
Query: 6   IEIWNIVFISHKRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIE 65
           +EIWN+VF+ + R     + PL    IDTG+G ER+ ++LQ K S ++ D+  PL++  E
Sbjct: 190 LEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGE 249
Query: 66  KVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDA 122
           +VSG K YG  F T      D + R+++D+ R IT A++D + P    +   +R ++R A
Sbjct: 250 EVSGKK-YGEKFET------DVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRA 302
Query: 123 LLIS-----EDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLIL-GEESRIFDN 176
           +        E+ F  K   LV        +I+ + YPE++ S   ++ I+ GEE R    
Sbjct: 303 MRFGYKLGIENPFLYKGVDLV-------VDIMKEPYPELELSREFVKGIVKGEEKRFIKT 355
Query: 177 LRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTK--QLARDPSITEISGDMAFTL 234
           L+                              G++Y+ +  Q A +     +SG   FT 
Sbjct: 356 LKA-----------------------------GMEYIQEVIQKALEEGRKTLSGKEVFTA 386
Query: 235 YDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSK 273
           YDTYG   ++I E+A  K L +  E F+ +L E +ER++
Sbjct: 387 YDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 425
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 Back     alignment and structure
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query797
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 4e-53
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 2e-46
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 2e-43
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 8e-42
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 5e-30
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 4e-22
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
 Score =  195 bits (499), Expect = 4e-53
 Identities = 110/641 (17%), Positives = 208/641 (32%), Gaps = 170/641 (26%)

Query: 4   DLIEIWNIVFISHKR-------VSADTIVPLSKNYIDTGLGFERLVTILQ---------- 46
             +E+  +VF++ +        +       +    +DTG G ER V   +          
Sbjct: 206 GGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIF 265

Query: 47  -----------NKTSTYDTDLFLPLLETIEKVSG-----------------AKPYGRTFT 78
                      N +   + +    ++    K++G                 A   G +  
Sbjct: 266 PEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVE 325

Query: 79  TSNRTDL-DTSYRMLSDYSRMITVALADNMFPDATAK---LRNVVRDAL----LISEDVF 130
                 +       L+D++R I   L D + P         R ++R +L     +   + 
Sbjct: 326 ELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGLD 385

Query: 131 KVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVK 190
                 LV+       +ILG  +     ++ +I  +  E+ R    + K           
Sbjct: 386 LYD---LVEMH----KKILGFEFDVPLSTVQEI--LELEKERYRTTVSK----------- 425

Query: 191 TQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGDMAFTLYDTYGLSKNIIQELAA 250
                             G + + + + R     ++  D    LYD++G+   +   +AA
Sbjct: 426 ------------------GTRLVERLVERK---KKLEKDDLIELYDSHGIPVELAVGIAA 464

Query: 251 AKKLTLCHEA-FEQKLNELKERSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSK 309
            K   +        +L +   +  A+       I L +   +P T+  Y     YD  + 
Sbjct: 465 EKGAEVEMPKDIYAELAKRHSK--AEKVQEK-KITLQN--EYPATEKLY-----YDDPTL 514

Query: 310 RYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQLEHNAWVGLIFDKTNLYAT 369
                      V  V GD V                              I +++  Y  
Sbjct: 515 LE-----FEAEVIGVEGDFV------------------------------ILNRSAFYPE 539

Query: 370 AGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDAR 429
           +GGQ +D+G   L       GK E+ ++   +G ++H   VV   K   G   +  +D+ 
Sbjct: 540 SGGQDNDVGY--LIA---NGGKFEVVDVLEADGVVLH---VVKGAKPEVGTKVKGVIDSD 591

Query: 430 MRLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEK 488
           +R   MR H+ +H+L  +L++VL    +Q   R    +  LD + +    S + +  +E 
Sbjct: 592 VRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHF-RRPSEEEIKEIEM 650

Query: 489 YINDVIADQVQVDRRHMRASE--------LPSLTHLTVIPGEIYPDDVILIDISDKENVI 540
             N  I     +    M   E        L          G      + ++ + D     
Sbjct: 651 LANREILANKPIKWEWMDRIEAERKFGFRL-------YQGGVPPGRKIRVVQVGD----- 698

Query: 541 SREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGES 581
             + C GTH  +TG I    ++  +S   GV   +   GE+
Sbjct: 699 DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query797
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 100.0
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 100.0
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 99.93
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 99.92
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.86
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 99.84
2zvf_A171 Alanyl-tRNA synthetase; C-terminal, oligomerizatio 99.64
3g98_A111 Alanyl-tRNA synthetase; alpha and beta fold, amino 99.33
1j5w_A298 Glycyl-tRNA synthetase alpha chain; structural gen 82.43
3rf1_A311 Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA 81.33
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
Probab=100.00  E-value=2.3e-126  Score=1113.83  Aligned_cols=489  Identities=22%  Similarity=0.361  Sum_probs=423.9

Q ss_pred             eEEEeeeeeeee-------------ccCCCCccccCCCCcccCCchHHHHHHHHhCCCCcccccchHHHHHHHHHHhCCC
Q psy6337           5 LIEIWNIVFISH-------------KRVSADTIVPLSKNYIDTGLGFERLVTILQNKTSTYDTDLFLPLLETIEKVSGAK   71 (797)
Q Consensus         5 ~lEiWNlVFmQy-------------~r~~~g~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pl~~~i~~~~~~~   71 (797)
                      .|||||||||||             || ++|+|+|||+||||||||||||||||||++||||| +|.|||++|++++|++
T Consensus       208 glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~  285 (752)
T 2zze_A          208 GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIE  285 (752)
T ss_dssp             TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCC
T ss_pred             CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCC
Confidence            499999999999             88 69999999999999999999999999999999999 9999999999999985


Q ss_pred             -----------CCCCcccCCCCCCC------------------------CceEEEEeecccceeeeecCCCcCCchh---
Q psy6337          72 -----------PYGRTFTTSNRTDL------------------------DTSYRMLSDYSRMITVALADNMFPDATA---  113 (797)
Q Consensus        72 -----------~y~g~~~~~~~~~~------------------------d~a~RviaDH~R~~~~~iaDG~~Psn~~---  113 (797)
                                 +|+|.++.++...+                        +.++||||||+||++|||+||++|||+|   
T Consensus       286 y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGY  365 (752)
T 2zze_A          286 KIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGY  365 (752)
T ss_dssp             CCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHH
T ss_pred             ccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhH
Confidence                       24455542221211                        4688899999999999999999999994   


Q ss_pred             HHHHHHHHHHHHhHHhhcccccccHHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCc
Q psy6337         114 KLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQP  193 (797)
Q Consensus       114 vLRrilRRa~r~~~~~~~~~~~~~l~~Lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p  193 (797)
                      |||||||||+||+++++...  + |++|||.|++.|+++||||.++++.|.+||+.||++|.+|                
T Consensus       366 vlRrilRRa~r~~~~lg~~~--~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~T----------------  426 (752)
T 2zze_A          366 LARLLIRKSIRHLRELGLEV--P-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAET----------------  426 (752)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC--C-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHhCCCc--c-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHH----------------
Confidence            99999999999999887766  7 9999999999999999999999999999999999999985                


Q ss_pred             chhhhccccchhHhhHHHHHHHHHhcCCC--CCccChhhhhhhhccCCCChHHHHHHHHHcCCccCHH-HHHHHHHHHHH
Q psy6337         194 ELEQFNIMEEPGLVLGVKYLTKQLARDPS--ITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHE-AFEQKLNELKE  270 (797)
Q Consensus       194 ~~~~~~~~~~~~l~~g~~~l~~~~~~~~~--~~~l~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~-~f~~~~~~~~~  270 (797)
                                  |++|+++|++.+++.++  .+.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+
T Consensus       427 ------------l~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~  494 (752)
T 2zze_A          427 ------------LRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAE  494 (752)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGG
T ss_pred             ------------HHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHH
Confidence                        56677777777665321  2579999999999999999999999999999999999 89999999998


Q ss_pred             HHHhhhcCCCcchhhhcccCCCCCCCCCcceeeecCCCCcccccccceEEEEEEECCeeeecccccccccccCccccchh
Q psy6337         271 RSKAKAASNVPDIDLMDLKHFPVTDDKYKYDYHYDTNSKRYTFPCLDTNLVGIVIGDQVFCIDKHAIRHARSGASIDSIQ  350 (797)
Q Consensus       271 ~s~~~~~~~~~~~~~~~~~~~~~T~~~~ky~~~y~~~~~~Y~~~~~~a~Vl~i~~~~~~~~~~~~~v~~~~~~~~~~~~~  350 (797)
                      ++|++....+....  ....+|+|+..+     |+..   |. .+++|+|+++..                         
T Consensus       495 ~~r~~~~~~~~~~~--~~~~~~~T~~l~-----Y~~~---yl-~~~~a~Vl~i~~-------------------------  538 (752)
T 2zze_A          495 RTKEEKGEELVDFE--LLKDLPDTRRLY-----YEDP---FM-XEFDAXVLRVIX-------------------------  538 (752)
T ss_dssp             CC-------CCCSS--SSSSSCCCEEHH-----HHCT---TC-CEEEEEEEEEET-------------------------
T ss_pred             HHhhcccccchhhH--HhccCCCceeec-----ccCC---cc-ceEEEEEEEEEc-------------------------
Confidence            88754211110111  112345664332     3332   31 468999999862                         


Q ss_pred             ccCCCeEEEEeecceeeeCCCCCCCceEEEEcCCCccccceEEEEEEEEeCCEEEEEEEeecCcccCCCCeEEEEechhh
Q psy6337         351 LEHNAWVGLIFDKTNLYATAGGQIDDIGVAYLTNTTQENGKVEIGELASLEGKIVHFGNVVSSFKVTPGLTSRVEVDARM  430 (797)
Q Consensus       351 ~~~~~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~~~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~l~~G~~V~~~VD~~r  430 (797)
                            .+||||+|||||||||||+|+|+|..++     ..+.|.+|++.+|.++|++...  +.+++|++|.+.|||+|
T Consensus       539 ------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g-----~~~~V~dv~k~~g~ivH~~~~~--~~l~vGd~V~~~VD~~r  605 (752)
T 2zze_A          539 ------DWVILDATAFYPEGGGQPYDTGVLIVNG-----REVXVTNVQXVGXVIIHXVEDP--GAFXEGMIVHGXIDWXR  605 (752)
T ss_dssp             ------TEEEESEECSCCSBTTBCCCCEEEEETT-----EEEEEEEEEEETTEEEEEESCG--GGCCTTCEEEEEECHHH
T ss_pred             ------CEEEEeCCCCCCCCCCCCCCEEEEEeCC-----EEEEEEeeeecCcEEEEecccc--CccCcCCeEEEEEeHHH
Confidence                  2599999999999999999999998755     4799999999999999999752  67889999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHHHHhh-cceEecccccCCCceEEEeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCccc
Q psy6337         431 RLGCMRAHTTSHLLNAALRRVL-TCTYQKSCRVFSDECALDFSVYGETLSVDSVAAVEKYINDVIADQVQVDRRHMRASE  509 (797)
Q Consensus       431 R~~~~~~HTAtHLL~~Al~~vl-~~v~q~Gs~v~~d~~r~Df~~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~~e  509 (797)
                      |+.+|++|||+|||++||+++| .+++|.|+++.++++||||+++ +++|++++.+||+.||++|++++||.+.+++++|
T Consensus       606 R~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~-~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eE  684 (752)
T 2zze_A          606 RIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHY-XRISEEELXEIEMLANRIVMEDRXVTWEWLPRTT  684 (752)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECS-SCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCccceeecCHHH
Confidence            9999999999999999999999 7899999999999999999985 6899999999999999999999999999999999


Q ss_pred             ccccccccccC-CCcCCCcEEEEEeCCCCccccCCCcccCccCCccccccEEEeeeecccCCeEEEEEEecH
Q psy6337         510 LPSLTHLTVIP-GEIYPDDVILIDISDKENVISREPCCGTHVFNTGHIESCTVIGYKSYNHGVRSIKCLTGE  580 (797)
Q Consensus       510 A~~~~g~~~~~-ge~y~~~vrVV~Ig~~~~~~~~e~CgGTHV~nTgeIg~fkIl~~~~~~~gv~RI~~vtG~  580 (797)
                      |++.++++.++ +++|.+.||||+||+    +|+++||||||.|||+||.|+|++++++++|++||+|+||.
T Consensus       685 A~~~~~~~lf~~ge~ygd~VRVV~IGd----~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~  752 (752)
T 2zze_A          685 AEQXYGFRLYQGGVVPGREIRVVXIED----WDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE  752 (752)
T ss_dssp             HHHHHCGGGCSSCCCCSSEEEEEEETT----TEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred             HhhcchhhhhcCCCCCCCeEEEEEECC----ceeCCCCCCccCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence            98887765554 688888999999999    99999999999999999999999999999999999999994
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} Back     alignment and structure
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Back     alignment and structure
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 797
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 2e-16
d1v4pa_151 d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo 2e-13
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 4e-13
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 1e-12
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 6e-08
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 0.001
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure

class: All alpha proteins
fold: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
superfamily: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
family: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
domain: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score = 76.8 bits (188), Expect = 2e-16
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)

Query: 53  DTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT 112
           + D+  PL++  E+VSG K YG       + + D + R+++D+ R IT A++D + P   
Sbjct: 1   EIDIIFPLIQFGEEVSG-KKYG------EKFETDVALRVIADHLRAITFAISDGVIPSNE 53

Query: 113 ---AKLRNVVRDALLISEDVFKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGE 169
                +R ++R A             +   +L      +   V   +         +   
Sbjct: 54  GRGYVIRRILRRA------------MRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELS 101

Query: 170 ESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLGVKYLTKQLARDPSITEISGD 229
              +   ++               E ++F    + G+    + + K L        +SG 
Sbjct: 102 REFVKGIVKG--------------EEKRFIKTLKAGMEYIQEVIQKALEEGRKT--LSGK 145

Query: 230 MAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAASNVPDID 284
             FT YDTYG   ++I E+A  K L +  E F+ +L E +ER++         + 
Sbjct: 146 EVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVK 200
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 Back     information, alignment and structure
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query797
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 100.0
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.97
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.96
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.93
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 99.81
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 99.58
d1j5wa_281 Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo 82.69
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: All alpha proteins
fold: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
superfamily: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
family: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
domain: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.4e-53  Score=435.35  Aligned_cols=188  Identities=27%  Similarity=0.460  Sum_probs=167.5

Q ss_pred             cccchHHHHHHHHHHhCCCCCCCcccCCCCCCCCceEEEEeecccceeeeecCCCcCCch---hHHHHHHHHHHHHhHHh
Q psy6337          53 DTDLFLPLLETIEKVSGAKPYGRTFTTSNRTDLDTSYRMLSDYSRMITVALADNMFPDAT---AKLRNVVRDALLISEDV  129 (797)
Q Consensus        53 dtDlF~pl~~~i~~~~~~~~y~g~~~~~~~~~~d~a~RviaDH~R~~~~~iaDG~~Psn~---~vLRrilRRa~r~~~~~  129 (797)
                      |||+|.|||+.|++++|+ +|..      ....++||||||||+||++|||+|||+|||+   ||||||||||+||++.+
T Consensus         1 etDlf~pii~~i~~~~~~-~Y~~------~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~l   73 (221)
T d1riqa1           1 EIDIIFPLIQFGEEVSGK-KYGE------KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKL   73 (221)
T ss_dssp             GSTTTHHHHHHHHHHHTC-CTTS------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHhHHHHHHHHHHHhCC-CcCc------CcccCceeehhHHHHHHHHHHHhcCCCCCcCCCchHHHHHHHHHHHHHHHh
Confidence            799999999999999998 6753      2345789999999999999999999999999   49999999999999998


Q ss_pred             hcccccccHHHHHHHHHHHhcccChhhhhcHHHHHHHHHHHHHhHHHHHHhhhhhcccccccCcchhhhccccchhHhhH
Q psy6337         130 FKVKQGKLVKELSYNIAEILGDVYPEIQDSINKIQLILGEESRIFDNLRKAAVKEWKPLVKTQPELEQFNIMEEPGLVLG  209 (797)
Q Consensus       130 ~~~~~~~~l~~Lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~g  209 (797)
                      +...  +||++||+.|++.|++.||||.++++.|.++|..||++|.+|+                            .+|
T Consensus        74 g~~~--~~l~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~f~~tl----------------------------~~G  123 (221)
T d1riqa1          74 GIEN--PFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTL----------------------------KAG  123 (221)
T ss_dssp             TCCS--CCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
T ss_pred             cccc--chhhhhHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence            8877  7999999999999999999999999999999999999999864                            555


Q ss_pred             HHHHHHHHhcCC--CCCccChhhhhhhhccCCCChHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHhhhc
Q psy6337         210 VKYLTKQLARDP--SITEISGDMAFTLYDTYGLSKNIIQELAAAKKLTLCHEAFEQKLNELKERSKAKAA  277 (797)
Q Consensus       210 ~~~l~~~~~~~~--~~~~l~g~~af~LydTyGfP~dl~~~ia~e~g~~vd~~~f~~~~~~~~~~s~~~~~  277 (797)
                      +++|++.+++..  +++.|||++||+||||||||+|||++||+++|++||+++|+++|++||++||++++
T Consensus       124 ~~~~~~~i~~~~~~~~~~l~g~~af~LydTyGfP~elt~eia~e~gl~vD~~gF~~~m~eqre~Sr~a~k  193 (221)
T d1riqa1         124 MEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK  193 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHccccCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHhhc
Confidence            666665554321  23689999999999999999999999999999999999999999999999987664
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure