Psyllid ID: psy6386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETPPSY
Secondary Structure (PSIPRED)
cEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVfdyidqgrnpqlytKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAirggdetppsy
Flexible Loop (DISEMBL)
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEkaltkneqvkgKIDAYRKFKAHMLVELSGAFPNELAKYRAirggdetppsy
Low Complexity Region (SEG)
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETPPSY
Disordered region (IsUnstruct)
*IIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRA***********
Disordered Region (DISOPRED)
MIIHI**HLGE***FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNEL****************
Disordered Region (DISEMBL)
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRG********
Disordered Region (DISPRO)
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGG*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIIHILNHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIRGGDETPPSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q16G71	130	Mediator of RNA polymeras	N/A	N/A	0.767	0.684	0.733	5e-35
Q7Q5R5	130	Mediator of RNA polymeras	yes	N/A	0.767	0.684	0.722	1e-34
Q6DJ25	135	Mediator of RNA polymeras	yes	N/A	0.793	0.681	0.666	8e-32
Q6IP67	135	Mediator of RNA polymeras	N/A	N/A	0.793	0.681	0.655	2e-31
Q9CXU0	135	Mediator of RNA polymeras	yes	N/A	0.793	0.681	0.655	3e-31
Q5R6P5	135	Mediator of RNA polymeras	yes	N/A	0.793	0.681	0.655	3e-31
Q9BTT4	135	Mediator of RNA polymeras	yes	N/A	0.793	0.681	0.655	3e-31
Q3ZCF2	135	Mediator of RNA polymeras	yes	N/A	0.793	0.681	0.655	3e-31
Q0VIA1	134	Mediator of RNA polymeras	yes	N/A	0.784	0.679	0.655	1e-30
Q4R6W4	135	Mediator of RNA polymeras	N/A	N/A	0.784	0.674	0.637	3e-30

>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1

 Score =  145 bits (367), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 83/90 (92%), Gaps = 1/90 (1%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q++++GLQEIDKLK+QV D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+
Sbjct: 42  QSLVTGLQEIDKLKNQV-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDS 100

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFK++++ EL   FP E+AKY+AIRG +
Sbjct: 101 YRKFKSNLMKELDETFPTEIAKYKAIRGDE 130

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 84/90 (93%), Gaps = 1/90 (1%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q++++GLQEIDKLK+Q+ D++VPLEVFDYIDQGRNPQLYTKDCI+KALTKNE+VKGKID+
Sbjct: 42  QSLVTGLQEIDKLKNQI-DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDS 100

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFK++++ ELS  FP E++KY+AIRG +
Sbjct: 101 YRKFKSNLMKELSETFPVEISKYKAIRGDE 130

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1

 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           +++GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  LVTGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ ELS  FP ++AKY+AIRG D  PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAIRGEDH-PPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 77/93 (82%), Gaps = 1/93 (1%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           ++ GLQ+IDK + Q+ DI VPLEVFDYIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  LVRGLQDIDKCRQQLHDITVPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ ELS  FP ++AKY+A+RG D  PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYKAVRGEDH-PPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Pongo abelii (taxid: 9601)

>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q3ZCF2|MED10_BOVIN Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct: 104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q0VIA1|MED10_DANRE Mediator of RNA polymerase II transcription subunit 10 OS=Danio rerio GN=med10 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 76/93 (81%), Gaps = 2/93 (2%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           MI+GLQ+I+K + Q+ DI+VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID   
Sbjct: 44  MITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLT 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
           KFK+ ++ EL   FP E+AKY+AI G D  PPS
Sbjct: 104 KFKSLLISELGKVFPEEMAKYKAIHGDD--PPS 134

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Negatively regulates the Wnt signaling pathway and positively regulates the Nodal signaling pathway. Required for cardiac cushion formation.

Danio rerio (taxid: 7955)

>sp|Q4R6W4|MED10_MACFA Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 75/91 (82%)

Query: 23  MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
           +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct: 44  IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query: 83  KFKAHMLVELSGAFPNELAKYRAIRGGDETP 113
           KFK+ ++  LS  FP ++AKYR+IRG D  P
Sbjct: 104 KFKSLLIQGLSKVFPEDMAKYRSIRGEDHLP 134

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
307204502	131	Mediator of RNA polymerase II transcript	0.775	0.687	0.877	1e-40
322781562	133	hypothetical protein SINV_14848 [Solenop	0.775	0.676	0.877	1e-40
307181347	131	Mediator of RNA polymerase II transcript	0.775	0.687	0.877	1e-40
242008159	149	nut2, putative [Pediculus humanus corpor	0.793	0.617	0.826	2e-40
380012559	131	PREDICTED: mediator of RNA polymerase II	0.767	0.679	0.865	6e-40
66531176	131	PREDICTED: mediator of RNA polymerase II	0.775	0.687	0.866	6e-40
156542032	131	PREDICTED: mediator of RNA polymerase II	0.775	0.687	0.855	6e-40
340717881	131	PREDICTED: mediator of RNA polymerase II	0.775	0.687	0.866	7e-40
332028006	131	Mediator of RNA polymerase II transcript	0.775	0.687	0.855	3e-39
383864179	131	PREDICTED: mediator of RNA polymerase II	0.775	0.687	0.855	1e-38

>gi|307204502|gb|EFN83182.1| Mediator of RNA polymerase II transcription subunit 10 [Harpegnathos saltator]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 86/90 (95%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q ++SGLQE+DKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QGLVSGLQEVDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FPNELAKYRAIRG +
Sbjct: 102 YRKFKANMLVELNRVFPNELAKYRAIRGDE 131

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322781562|gb|EFZ10240.1| hypothetical protein SINV_14848 [Solenopsis invicta]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 86/90 (95%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 44  QGLVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 103

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FPNELAKYRAIRG +
Sbjct: 104 YRKFKANMLVELNRVFPNELAKYRAIRGDE 133

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181347|gb|EFN68975.1| Mediator of RNA polymerase II transcription subunit 10 [Camponotus floridanus]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 86/90 (95%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QGLVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FPNELAKYRAIRG +
Sbjct: 102 YRKFKANMLVELNRVFPNELAKYRAIRGDE 131

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008159|ref|XP_002424879.1| nut2, putative [Pediculus humanus corporis] gi|212508444|gb|EEB12141.1| nut2, putative [Pediculus humanus corporis]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 87/92 (94%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q+++ GLQEIDKLKSQVQ++HVPLEVF+YIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QSLVHGLQEIDKLKSQVQEVHVPLEVFEYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGDET 112
           YRKFKAH+LVEL+ AFPNE+ KYRAIRG + +
Sbjct: 102 YRKFKAHLLVELNAAFPNEITKYRAIRGDERS 133

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012559|ref|XP_003690347.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Apis florea]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 85/89 (95%)

Query: 22  TMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 81
           ++++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY
Sbjct: 43  SLVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY 102

Query: 82  RKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           RKFKA+MLVEL+  FP ELAKYRAIRG +
Sbjct: 103 RKFKANMLVELTRVFPQELAKYRAIRGDE 131

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66531176|ref|XP_624779.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10 [Apis mellifera]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/90 (86%), Positives = 85/90 (94%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QGLVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FP ELAKYRAIRG +
Sbjct: 102 YRKFKANMLVELTRVFPQELAKYRAIRGDE 131

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542032|ref|XP_001600793.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Nasonia vitripennis]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/90 (85%), Positives = 86/90 (95%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLK+QVQD+HVPLEVFDYIDQGRNPQLYTKDCI+KALTKNEQVKGKIDA
Sbjct: 42  QGLVTGLQEIDKLKAQVQDVHVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FPNELAKYRAIRG +
Sbjct: 102 YRKFKANMLVELNRVFPNELAKYRAIRGDE 131

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717881|ref|XP_003397402.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Bombus terrestris] gi|350400264|ref|XP_003485779.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Bombus impatiens]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/90 (86%), Positives = 86/90 (95%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QGLVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FP+ELAKYRAIRG +
Sbjct: 102 YRKFKANMLVELTRVFPHELAKYRAIRGDE 131

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028006|gb|EGI68057.1| Mediator of RNA polymerase II transcription subunit 10 [Acromyrmex echinatior]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/90 (85%), Positives = 85/90 (94%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLKSQVQD+HVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QGLVNGLQEIDKLKSQVQDVHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FP+EL KYRAIRG +
Sbjct: 102 YRKFKANMLVELNRVFPHELTKYRAIRGDE 131

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864179|ref|XP_003707557.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10-like [Megachile rotundata]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/90 (85%), Positives = 85/90 (94%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
           Q +++GLQEIDKLKSQVQD+ VPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA
Sbjct: 42  QGLVNGLQEIDKLKSQVQDVLVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 101

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAIRGGD 110
           YRKFKA+MLVEL+  FP+ELAKYRAIRG +
Sbjct: 102 YRKFKANMLVELTRVFPHELAKYRAIRGDE 131

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
UNIPROTKB|F1S049	135	MED10 "Uncharacterized protein	0.793	0.681	0.655	4.9e-30
UNIPROTKB|Q3ZCF2	135	MED10 "Mediator of RNA polymer	0.793	0.681	0.655	7.9e-30
UNIPROTKB|Q9BTT4	135	MED10 "Mediator of RNA polymer	0.793	0.681	0.655	7.9e-30
MGI|MGI:106331	135	Med10 "mediator of RNA polymer	0.793	0.681	0.655	7.9e-30
RGD|1310128	135	Med10 "mediator complex subuni	0.793	0.681	0.655	7.9e-30
UNIPROTKB|E1BVD0	134	MED10 "Uncharacterized protein	0.784	0.679	0.648	1.3e-29
UNIPROTKB|F1PPU6	104	MED10 "Uncharacterized protein	0.784	0.875	0.648	1.3e-29
ZFIN|ZDB-GENE-070117-2423	134	med10 "mediator of RNA polymer	0.784	0.679	0.655	3.4e-29
FB|FBgn0036581	133	MED10 "Mediator complex subuni	0.741	0.646	0.666	2.4e-28
WB|WBGene00007014	173	mdt-10 [Caenorhabditis elegans	0.870	0.583	0.415	1.9e-19

UNIPROTKB|F1S049 MED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 61/93 (65%), Positives = 79/93 (84%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
             KFK+ ++ ELS  FP ++AKYR+IRG D+ PPS
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIRGEDQ-PPS 135

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q3ZCF2 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/93 (65%), Positives = 78/93 (83%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
             KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9BTT4 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/93 (65%), Positives = 78/93 (83%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
             KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:106331 Med10 "mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/93 (65%), Positives = 78/93 (83%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
             KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|1310128 Med10 "mediator complex subunit 10" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/93 (65%), Positives = 78/93 (83%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
             KFK+ ++ ELS  FP ++AKYR+IRG D  PPS
Sbjct:   104 KFKSLLIQELSKVFPEDMAKYRSIRGEDH-PPS 135

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|E1BVD0 MED10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 59/91 (64%), Positives = 76/91 (83%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             M++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    44 MVTGLQDIDKCRQQLHDISVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETP 113
             KFK+ ++ EL+  FP ++AKY+AIRG D  P
Sbjct:   104 KFKSLLIQELTKVFPEDMAKYKAIRGEDPPP 134

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1PPU6 MED10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 59/91 (64%), Positives = 76/91 (83%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             +++GLQ+IDK + Q+ DI VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID  +
Sbjct:    13 IVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 72

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETP 113
             KFK+ ++ ELS  FP ++AKYR+IRG D  P
Sbjct:    73 KFKSLLIQELSKVFPEDMAKYRSIRGEDHAP 103

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

ZFIN|ZDB-GENE-070117-2423 med10 "mediator of RNA polymerase II transcription, subunit 10 homolog" [Danio rerio (taxid:7955)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 61/93 (65%), Positives = 76/93 (81%)

Query:    23 MISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYR 82
             MI+GLQ+I+K + Q+ DI+VPLEVF+YIDQGRNPQLYTK+C+E+AL KNEQVKGKID   
Sbjct:    44 MITGLQDIEKCRQQLHDINVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLT 103

Query:    83 KFKAHMLVELSGAFPNELAKYRAIRGGDETPPS 115
             KFK+ ++ EL   FP E+AKY+AI G D  PPS
Sbjct:   104 KFKSLLISELGKVFPEEMAKYKAIHGDD--PPS 134

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007507 "heart development" evidence=IMP

FB|FBgn0036581 MED10 "Mediator complex subunit 10" [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 58/87 (66%), Positives = 74/87 (85%)

Query:    22 TMISGLQEIDKLKSQVQDIHVPLEVF-DYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
             ++++GLQEIDKL+SQVQD++VP EVF DYIDQ +NPQLYTKDC+EKAL KNE+VKGKI+ 
Sbjct:    43 SLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEG 102

Query:    81 YRKFKAHMLVELSGAFPNELAKYRAIR 107
              +KFK ++L+EL   FPNE+  YRA R
Sbjct:   103 LKKFKTNLLLELYKTFPNEMNNYRAYR 129

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

WB|WBGene00007014 mdt-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/101 (41%), Positives = 66/101 (65%)

Query:     7 NHLGEYSKFISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEK 66
             N   +Y   ++    T++ GLQ++D++K    D  VPL++  Y+D G+NP LY+K C+EK
Sbjct:    67 NFQTKYQDALNGRIYTLVRGLQDLDRMKGTFSDKKVPLDLLPYLDDGKNPCLYSKHCMEK 126

Query:    67 ALTKNEQVKGKIDAYRKFKAHMLVELSGAFPNELAKYRAIR 107
              L KN+ V GKI+ Y+KF+AH++ E S   P+ +  YR+IR
Sbjct:   127 TLEKNKAVNGKIEIYKKFRAHLMKEFSEEMPDLVMYYRSIR 167

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BTT4	MED10_HUMAN	No assigned EC number	0.6559	0.7931	0.6814	yes	N/A
Q9CXU0	MED10_MOUSE	No assigned EC number	0.6559	0.7931	0.6814	yes	N/A
Q5R6P5	MED10_PONAB	No assigned EC number	0.6559	0.7931	0.6814	yes	N/A
Q6DJ25	MED10_XENTR	No assigned EC number	0.6666	0.7931	0.6814	yes	N/A
Q0VIA1	MED10_DANRE	No assigned EC number	0.6559	0.7844	0.6791	yes	N/A
Q3ZCF2	MED10_BOVIN	No assigned EC number	0.6559	0.7931	0.6814	yes	N/A
Q9GYU7	MED10_DROME	No assigned EC number	0.6666	0.7413	0.6466	yes	N/A
Q16G71	MED10_AEDAE	No assigned EC number	0.7333	0.7672	0.6846	N/A	N/A
Q7Q5R5	MED10_ANOGA	No assigned EC number	0.7222	0.7672	0.6846	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
pfam09748	120	pfam09748, Med10, Transcription factor subunit Med	8e-40

>gnl|CDD|150423 pfam09748, Med10, Transcription factor subunit Med10 of Mediator complex

 Score =  128 bits (324), Expect = 8e-40
 Identities = 44/86 (51%), Positives = 62/86 (72%)

Query: 21  QTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDA 80
            T++ GLQ +DKL  Q+ D+++PLEV  YID GRNP LYT++ +E  L KN+ VKGK+ A
Sbjct: 35  NTLVRGLQSLDKLAQQLSDVNIPLEVIQYIDDGRNPDLYTREFVELVLRKNQYVKGKMHA 94

Query: 81  YRKFKAHMLVELSGAFPNELAKYRAI 106
           ++KF+  +  ELS AFP  +A+YR I
Sbjct: 95  FKKFRDVLAEELSEAFPELVAEYRDI 120

Med10 is one of the protein subunits of the Mediator complex, tethered to Rgr1 protein. The Mediator complex is required for the transcription of most RNA polymerase II (Pol II)-transcribed genes. Med10 specifically mediates basal-level HIS4 transcription via Gcn4, and, additionally, there is a putative requirement for Med10 in Bas2-mediated transcription. Med10 is part of the middle region of Mediator. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
KOG3046|consensus	147		100.0
PF09748	128	Med10: Transcription factor subunit Med10 of Media	100.0

>KOG3046|consensus

Probab=100.00  E-value=3.3e-39  Score=239.63  Aligned_cols=105  Identities=49%  Similarity=0.841  Sum_probs=99.4

Q ss_pred             cCcchh-hHHHHHHHHHHHHHHHHHhhhhcCCCCCchHHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q psy6386           9 LGEYSK-FISSFRQTMISGLQEIDKLKSQVQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAYRKFKAH   87 (116)
Q Consensus         9 ~g~~s~-~l~~~in~lV~~L~~ld~~a~~~~~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~~~fr~~   87 (116)
                      ....++ +|..++++||.+|+.+++++++|+++.||+||++|||+|||||+|||+|+|+|+++||++|||++||++||++
T Consensus        38 F~~tsq~~L~qrl~tLv~~L~~l~~~s~k~n~i~IPleVl~yIddGrNPd~ytke~le~~~~kNq~vkGK~~~~K~fr~~  117 (147)
T KOG3046|consen   38 FQPTSQDALNQRLNTLVRGLQDLDKLSSKLNDIQIPLEVLEYIDDGRNPDLYTKEFLEKCLAKNQYVKGKIDAFKKFRKH  117 (147)
T ss_pred             CCCCcHHHHHHHHHHHHHHhhhhHHHHHhhccccCcHHHHHHHhcCCCccHHHHHHHHHHHHhhhHHhhhHHHHHHHHHH
Confidence            344555 9999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhChhhHHHHHHhhCCCCCC
Q psy6386          88 MLVELSGAFPNELAKYRAIRGGDETP  113 (116)
Q Consensus        88 L~~el~~~fPel~~~~~~ir~~~~~~  113 (116)
                      |+++|+++|||+++.|+.||+.+.++
T Consensus       118 l~eEl~q~fPe~~~~yr~Ir~e~~~~  143 (147)
T KOG3046|consen  118 LAEELSQEFPELVDPYRSIRAEDAPE  143 (147)
T ss_pred             HHHHHHHHChHHHHHHHHHHhccCcc
Confidence            99999999999999999999887544

>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=1.4e-38  Score=231.51  Aligned_cols=97  Identities=41%  Similarity=0.735  Sum_probs=93.9

Q ss_pred             Ccchh-hHHHHHHHHHHHHHHHHHhhhh-------cCCCCCchHHHHHHhcCCCcchHHHHHHHHHHHHhHHHhhHHHHH
Q psy6386          10 GEYSK-FISSFRQTMISGLQEIDKLKSQ-------VQDIHVPLEVFDYIDQGRNPQLYTKDCIEKALTKNEQVKGKIDAY   81 (116)
Q Consensus        10 g~~s~-~l~~~in~lV~~L~~ld~~a~~-------~~~~~IP~eVl~yID~GrNPdiyTre~vE~~~~~Nq~~kGK~~a~   81 (116)
                      |++|+ +|..+|+.++++|++|++++..       +++++||+|||+|||+|||||+|||||||+|+++||++|||++||
T Consensus        24 ~~~s~~~L~~ki~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~GrNPDiyTre~vE~~~~~Nq~~kGK~~a~  103 (128)
T PF09748_consen   24 GPPSQEALNQKINQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDDGRNPDIYTREFVELVRRENQYVKGKMEAF  103 (128)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhCCCCchHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            67888 9999999999999999999998       669999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhChhhHHHHHHh
Q psy6386          82 RKFKAHMLVELSGAFPNELAKYRAI  106 (116)
Q Consensus        82 ~~fr~~L~~el~~~fPel~~~~~~i  106 (116)
                      ++||++|+++|+++|||+.+.|++|
T Consensus       104 ~~fr~~L~~el~~~fPe~~~~~~~i  128 (128)
T PF09748_consen  104 KSFRDVLAEELASAFPELKEDVRRI  128 (128)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHhhC
Confidence            9999999999999999999999975

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00