Psyllid ID: psy6394

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040-----
Protein Sequence
MANVLSVSRSLRSICKTGFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEccccccccEEcccccHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccEEHHHcccccccEEEEcccccccccccccHHccccccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccEEcccccEEEEEcccEEEEEcccccEEEEEEEEccccEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEEEEcccccccEEcccccEEEEEEccccEEEccccccEEEEEEEccccEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccEEEccccccEEEcccEEEEEEEcccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccEEEEcccEEEEEEEEccccEEEEcccccccccccccccHHHHHHHHccccccccccccccEEEEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccEEEEcccEEEEEEEEccccEEEEcEEEEccccccccccHHHHHHHHHHHHHHHccccHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEHHHHHHHHHccccEcHEEEEEcccccccccccccEEEEEEcccccHHEEcccccEcccccHHHHHHHHHHHcccccEEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEcccEEccccccccccccccccccccccccccHHHHccccccccccccccccccccccccEEEEEcccccccccHEEEEHEEEEccccccEcccccEEEEEcccEEEEEccccccEEEEEEEccccEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccHHHHHHHHHccccHHcccccccccEEEHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEcccccHHHHcccEEEEEcccccccccHHHHHHHHHcccccccccccccEEEEEccEEEEEEccccccEEEEEEEccccEEEccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHccccHHccccccccccccHHHHHHHHHccccccccccHHHHHHHHcccccHHcccccccccccHHccccccHHHcccccccccccHccHHHHcccccccccccccccccccccEcccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHcEEEccccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEccccEEEEEcHEEEEEccccEEEcHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccEEEEEccccccccccccccccHHHEEEEHcHcccccEEccccEEEEEcHEEEEEccccEEEcHHHHHHHHHHHHHHHHcHHHHHcc
Coil and Loop (DISEMBL)
MANVLSVSRSLRSICKTGFLFGEIHRKvsnvttdshsnnetVEITVSITatlpfsesedllfskdgtLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHfsnyfshipkQLFLFFRIstnvvfeenftYTNKflcttgsdslsrkfssslqlrhglhlstpplqchhhlhtSCIRHKLIQFKLADIGEGIREVNikewngnvtegarinEFDVVCevesdkasvtITSRYKGTVRKVyygegdvalvgkplldievedegvaaeeadsldrkaapgvsevntpdtsdqpnetlhkepnkvnrepiahkpdvtpdlsrdsavshlnqpvnlnknkwkilaTPSVRRMIKHYEIDtkelrgtgkqgrVLKEDIITYmnspidetnlahtAHVREASNVISIRGYVKGMFKSMteahghhlstpplqchhhlhtSCIRHKLIQFNLADIGEGIREVNikewngnvtegarinEFDVVCevesdkasvtITSRYKGTVRKVyygegdvalvgkplldievedegvaaeeadsldrkaapgvsevntpdtsdqpnetlhkdpnkidtkelrgtgkqgrVLKEDIITymnspsdetnpahtahVREASNVISIRGYVKGMFKsmteantipslrlteevdttqlrdvkkEDIItymnspsdetnpahtahvreasnvipirgYVKGMFKsmteantipslrlteevdttqLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCmtehpilnasidptqenilvnpdhnisiaidtkhglvvpniksvNKLCLLDITRELLRIQgcshegkvlprdiqggtismsnvgnvggtlvqpiivPGQVCIVAFgkiqllprfDAEMRIVAKCILNVtwaadhrvvdgATVARAATLWKSLENilvnpdhnisiaidtkhglvvpniksvnklSLLDITRELLRIQgcshegkvlprdiqggtismsnvgnvggtlvqpiiVPRQVCIVAFgkiqllprfDAEMRVVAKCILNVTwaadhrvvdgATVARAATLWKSLVEnpallltq
Flexible Loop (DISEMBL)
manvlsvsrslrsicKTGFLFGEIHRKvsnvttdshsnnetVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEGIREVnikewngnvtegariNEFDvvcevesdkasvtitsrykgtvrkVYYGEGDVALVGKPLLDIEVEDEGVAaeeadsldrkaapgvsevntpdtsdqpnetlhkepnkvnrepiaHKPDVTPDLSRDSAVShlnqpvnlnknkwkilatpsVRRMIKHyeidtkelrgtgkqgrvLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDvvcevesdkasvtitsrykgtvrkVYYGEGDVALVGKPLLDIEVEDEGVAaeeadsldrkaapgvsevntpdtsdqpnetlhkdpnkidtkelrgtgkqgrvLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTeantipslrlteevdttqlrdvkkeDIITYmnspsdetnpahtahvreasnvIPIRGYVKGMFKSMTeantipslrlteevdttqlrdvkNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIdtkhglvvpnIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVtwaadhrvVDGATVARAATLWKslvenpallltq
Low Complexity Region (SEG)
MANVLSVSRSLRSICKTGFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTGsdslsrkfssslqlRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIevedegvaaeeadSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIevedegvaaeeadSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ
Disordered region (IsUnstruct)
**********LRSICKTGFLFGEIHRKVSNVTT*****NETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTGSDSL***F**SLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV***********************************************************************VNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV**************************************************************IIT*******************ASNVISIRGYVKGMFKSMTEANTIPSLRLT**************DIITY******************ASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALL***
Disordered Region (DISOPRED)
********RSLRSICKTGFLFGEIHRKVSN*T***HSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTG******************************************FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV*********************************************************************************LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDII************************************************PPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI****************************************************************************************************************************************************************RGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSA*YQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHE*KVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ
Disordered Region (DISEMBL)
********RSLRSICKTGFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG**********************************KEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG********************************LHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ
Disordered Region (DISPRO)
**NVLSVSRSLRSICKTGFLFGEIHRKVSNVTTDS*SNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEE**************************************************HKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE**********************************************************************************TP*VRR****YEIDTKELRGTGKQGRVLKEDIITYMNS**************************KG************LSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED*******************************************************************************************************************************************************NVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANVLSVSRSLRSICKTGFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVVFEENFTYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1045	2.2.26 [Sep-21-2011]
P11182	482	Lipoamide acyltransferase	yes	N/A	0.395	0.856	0.384	6e-84
P53395	482	Lipoamide acyltransferase	yes	N/A	0.395	0.856	0.379	5e-83
P11181	482	Lipoamide acyltransferase	yes	N/A	0.426	0.925	0.359	1e-82
Q23571	448	Lipoamide acyltransferase	yes	N/A	0.388	0.906	0.372	1e-80
Q8NX76	430	Dihydrolipoyllysine-resid	yes	N/A	0.382	0.930	0.293	9e-39
Q6GAB9	430	Dihydrolipoyllysine-resid	yes	N/A	0.382	0.930	0.293	9e-39
Q5HGY9	430	Dihydrolipoyllysine-resid	yes	N/A	0.382	0.930	0.293	9e-39
P65636	430	Dihydrolipoyllysine-resid	yes	N/A	0.382	0.930	0.293	9e-39
P65635	430	Dihydrolipoyllysine-resid	yes	N/A	0.382	0.930	0.293	9e-39
Q5HQ74	433	Dihydrolipoyllysine-resid	yes	N/A	0.381	0.921	0.282	1e-38

>sp|P11182|ODB2_HUMAN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3

 Score =  313 bits (801), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 183/476 (38%), Positives = 270/476 (56%), Gaps = 63/476 (13%)

Query: 435 HHHLHT-SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV 493
           HH L T + +R +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASV
Sbjct: 51  HHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASV 108

Query: 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS------ 547
           TITSRY G ++K+YY   D+A VGKPL+DIE E   +   E D ++    P VS      
Sbjct: 109 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTH 163

Query: 548 -EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH 606
            E+    T   P        N I   E+ G+GK GR+LKEDI+ Y+              
Sbjct: 164 QEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLE------------- 210

Query: 607 VREASNVISIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDE 665
            ++   ++     V+ M       + T+P L             V K  + T      D+
Sbjct: 211 -KQTGAILPPSPKVEIMPPPPKPKDMTVPIL-------------VSKPPVFT----GKDK 252

Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALY 725
           T P              I+G+ K M K+M+ A  IP     +E+D T+L  ++ ++  + 
Sbjct: 253 TEP--------------IKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIA 298

Query: 726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVP 785
             +  +KL++MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VP
Sbjct: 299 FAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVP 357

Query: 786 NIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ 845
           N+K+V    + DI  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +
Sbjct: 358 NVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPE 417

Query: 846 VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           V I A G I+ +PRF+ +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct: 418 VAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 473

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 6EC: 8

>sp|P53395|ODB2_MOUSE Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dbt PE=2 SV=2

 Score =  310 bits (793), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/480 (37%), Positives = 263/480 (54%), Gaps = 67/480 (13%)

Query: 433 QCHHHLHTSCI-RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKA 491
           Q  H L T+ + + +++QF L+DIGEGIREV IKEW   V EG  +++FD +CEV+SDKA
Sbjct: 49  QPRHSLRTAAVLQGQVVQFKLSDIGEGIREVTIKEWY--VKEGDTVSQFDSICEVQSDKA 106

Query: 492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS---- 547
           SVTITSRY G ++++YY   D+A VGKPL+DIE E   +   E D ++    P VS    
Sbjct: 107 SVTITSRYDGVIKRLYYNLDDIAYVGKPLIDIETE--ALKDSEEDVVE---TPAVSHDEH 161

Query: 548 ---EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHT 604
              E+    T   P        N I   E+ G+GK GR+LKEDI++++   +    P   
Sbjct: 162 THQEIKGQKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILSFLEKQTGAILP--- 218

Query: 605 AHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSD 664
                                        PS                K +I      P D
Sbjct: 219 -----------------------------PS---------------PKSEITPPPPQPKD 234

Query: 665 ETNPAHTAH---VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQV 721
            T P   A            P+ G+ K M K+M+ A  IP     +E+D TQL  ++ ++
Sbjct: 235 RTFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCDEIDLTQLVKLREEL 294

Query: 722 SALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHG 781
             +   +  +KL++MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ G
Sbjct: 295 KPVALAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTELG 353

Query: 782 LVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
           L+VPN+K+V    + +I  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I
Sbjct: 354 LIVPNVKNVQVRSVFEIAMELNRLQKLGSSGQLGTTDLTGGTFTLSNIGSIGGTYAKPVI 413

Query: 842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           +P +V I A G I+ LPRFD +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct: 414 LPPEVAIGALGAIKALPRFDQKGDVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 473

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P11181|ODB2_BOVIN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Bos taurus GN=DBT PE=1 SV=2

 Score =  308 bits (789), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 274/517 (52%), Gaps = 71/517 (13%)

Query: 400 REASNVISIRGY-VKGMFKSMTEAHGHHLSTPPLQCHHHLH----TSCIRHKLIQFNLAD 454
           R A  +I +R +   G    +   +      PP +  H       T+ ++ +++QF L+D
Sbjct: 12  RAAGQLICVRYFQTCGNVHVLKPKYVCFFGYPPFKYSHPYQWLKTTAALQGQIVQFKLSD 71

Query: 455 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA 514
           IGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K+YY   D A
Sbjct: 72  IGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDTA 129

Query: 515 LVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS-------EVNTPDTSDQPNETLHKDPN 567
            VGKPL+DIE E   +   E D ++    P VS       E+    T   P        N
Sbjct: 130 YVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTHQEIKGQKTLATPAVRRLAMEN 184

Query: 568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSM 627
            I   E+ G+GK GR+LKEDI+ Y+   +    P                          
Sbjct: 185 NIKLSEVIGSGKDGRILKEDILNYLEKQTGAILP-------------------------- 218

Query: 628 TEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAH---VREASNVIPIR 684
                 PS                K +I+     P D T P   +            P++
Sbjct: 219 ------PS---------------PKAEIMPPPPKPKDRTIPIPISKPPVFIGKDRTEPVK 257

Query: 685 GYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALS 744
           G+ K M K+M+ A  IP     +EVD T+L  ++ ++  +   +  +KL++MPFF+KA S
Sbjct: 258 GFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLKAAS 316

Query: 745 LCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLR 804
           L + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN+K+V    + +I  EL R
Sbjct: 317 LGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNR 376

Query: 805 IQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEM 864
           +Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ LPRF+ + 
Sbjct: 377 LQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKG 436

Query: 865 RIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
            +    I+NV+W+ADHR++DGATV+R + LWKS LEN
Sbjct: 437 EVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLEN 473

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|Q23571|ODB2_CAEEL Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=ZK669.4 PE=3 SV=1

 Score =  302 bits (773), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/480 (37%), Positives = 261/480 (54%), Gaps = 74/480 (15%)

Query: 432 LQCHHHLHTSCIRH-KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK 490
            + + HLHTS +    ++QF L+DIGEGI EV +KEW   V EG  I++FD VCEV+SDK
Sbjct: 14  FKLNKHLHTSKVAFMPVVQFKLSDIGEGIAEVQVKEWY--VKEGDTISQFDKVCEVQSDK 71

Query: 491 ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAA------P 544
           A+VTI+ RY G V+K+Y+    +A VG+ L+D+E+E      EE +   ++AA      P
Sbjct: 72  AAVTISCRYDGIVKKLYHEVDGMARVGQALIDVEIEGN---VEEPEQPKKEAASSSPEAP 128

Query: 545 GVSEVNTPDTSDQPNETLHKDP-------NKIDTKELRGTGKQGRVLKEDIITYMNS-PS 596
             S    P+++    + L           NKI   E+RGTGK GRVLKED++ ++   P+
Sbjct: 129 KSSAPKAPESAHSEGKVLATPAVRRIAIENKIKLAEVRGTGKDGRVLKEDVLKFLGQVPA 188

Query: 597 DETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDII 656
           D        H   ++N+              T     PS +  E +         KED+ 
Sbjct: 189 D--------HTSGSTNI------------RTTHQAPQPSSKSYEPL---------KEDV- 218

Query: 657 TYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRD 716
                                   +PIRGY + M K+MTEA  IP     +E++   L  
Sbjct: 219 -----------------------AVPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVK 255

Query: 717 VKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAI 776
            + ++    +E+  +KL+YMPFFIKA SL + E+P LN++ D   EN++    HNI +A+
Sbjct: 256 YRAELKEFAKER-HIKLSYMPFFIKAASLALLEYPSLNSTTDEKMENVIHKASHNICLAM 314

Query: 777 DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTL 836
           DT  GLVVPNIK+  +  + +I +EL R+     + ++   D+  GT S+SN+GN+GGT 
Sbjct: 315 DTPGGLVVPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIGGTY 374

Query: 837 VQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWK 896
             P++ P QV I A GKI+ LPRFD    ++   I+ V+W ADHRVVDGAT+AR +  WK
Sbjct: 375 ASPVVFPPQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVVDGATMARFSNRWK 434

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|Q8NX76|ODP2_STAAW Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=pdhC PE=3 SV=1

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 81/481 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  I E DV+ EV++DK+ V I S   GTV +V 
Sbjct: 3   FEFRLPDIGEGIHEGEIVKWF--VKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVM 60

Query: 508 YGEGDVALVGKPLLDIEVED----------------EGVAAEEADSLDRKAAPGVSEVNT 551
             EG VA+VG  ++ I+  D                E  A EEA +     A    EV+ 
Sbjct: 61  VEEGTVAVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDE 120

Query: 552 PDT-SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN--SPSDETNPAHTAHVR 608
             T    P+   +     ++ K + G+GK GR+ KED+  Y+N  +P+     A +A   
Sbjct: 121 NRTVKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAYLNGGAPTASNESAASATSE 180

Query: 609 EASNVISIRGYV--KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           E +   +    V  +G F   TE   IP++R                             
Sbjct: 181 EVAETPAAPAAVTLEGDFPETTE--KIPAMR----------------------------- 209

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
                            R   K M  S    +T P + L +E+D   L D + +   +  
Sbjct: 210 -----------------RAIAKAMVNSK---HTAPHVTLMDEIDVQALWDHRKKFKEIAA 249

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
           E+   KLT++P+ +KAL   + ++P LN S +     I+     NI IA DT  GL+VP 
Sbjct: 250 EQ-GTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPV 308

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K  ++  +  I+ E+  +   + +GK+   +++G T ++SN+G+ GG    P+I   +V
Sbjct: 309 VKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEV 368

Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
            I+  G+I   P   D E  IVA  +L ++ + DHR +DGAT   A    K L N   NP
Sbjct: 369 AILGIGRIAQKPIVKDGE--IVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN---NP 423

Query: 906 D 906
           +
Sbjct: 424 E 424

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6GAB9|ODP2_STAAS Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=pdhC PE=3 SV=1

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 81/481 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  I E DV+ EV++DK+ V I S   GTV +V 
Sbjct: 3   FEFRLPDIGEGIHEGEIVKWF--VKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVM 60

Query: 508 YGEGDVALVGKPLLDIEVED----------------EGVAAEEADSLDRKAAPGVSEVNT 551
             EG VA+VG  ++ I+  D                E  A EEA +     A    EV+ 
Sbjct: 61  VEEGTVAVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDE 120

Query: 552 PDT-SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN--SPSDETNPAHTAHVR 608
             T    P+   +     ++ K + G+GK GR+ KED+  Y+N  +P+     A +A   
Sbjct: 121 NRTVKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAYLNGGAPTASNESAASATSE 180

Query: 609 EASNVISIRGYV--KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           E +   +    V  +G F   TE   IP++R                             
Sbjct: 181 EVAETPAAPAAVTLEGDFPETTE--KIPAMR----------------------------- 209

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
                            R   K M  S    +T P + L +E+D   L D + +   +  
Sbjct: 210 -----------------RAIAKAMVNSK---HTAPHVTLMDEIDVQALWDHRKKFKEIAA 249

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
           E+   KLT++P+ +KAL   + ++P LN S +     I+     NI IA DT  GL+VP 
Sbjct: 250 EQ-GTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPV 308

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K  ++  +  I+ E+  +   + +GK+   +++G T ++SN+G+ GG    P+I   +V
Sbjct: 309 VKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEV 368

Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
            I+  G+I   P   D E  IVA  +L ++ + DHR +DGAT   A    K L N   NP
Sbjct: 369 AILGIGRIAQKPIVKDGE--IVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN---NP 423

Query: 906 D 906
           +
Sbjct: 424 E 424

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5HGY9|ODP2_STAAC Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=pdhC PE=3 SV=1

 Score =  163 bits (412), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 81/481 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  I E DV+ EV++DK+ V I S   GTV +V 
Sbjct: 3   FEFRLPDIGEGIHEGEIVKWF--VKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVM 60

Query: 508 YGEGDVALVGKPLLDIEVED----------------EGVAAEEADSLDRKAAPGVSEVNT 551
             EG VA+VG  ++ I+  D                E  A EEA +     A    EV+ 
Sbjct: 61  VEEGTVAVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDE 120

Query: 552 PDT-SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN--SPSDETNPAHTAHVR 608
             T    P+   +     ++ K + G+GK GR+ KED+  Y+N  +P+     A +A   
Sbjct: 121 NRTVKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAYLNGGAPTASNESAASATSE 180

Query: 609 EASNVISIRGYV--KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           E +   +    V  +G F   TE   IP++R                             
Sbjct: 181 EVAETPAAPAAVTLEGDFPETTE--KIPAMR----------------------------- 209

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
                            R   K M  S    +T P + L +E+D   L D + +   +  
Sbjct: 210 -----------------RAIAKAMVNSK---HTAPHVTLMDEIDVQALWDHRKKFKEIAA 249

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
           E+   KLT++P+ +KAL   + ++P LN S +     I+     NI IA DT  GL+VP 
Sbjct: 250 EQ-GTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPV 308

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K  ++  +  I+ E+  +   + +GK+   +++G T ++SN+G+ GG    P+I   +V
Sbjct: 309 VKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEV 368

Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
            I+  G+I   P   D E  IVA  +L ++ + DHR +DGAT   A    K L N   NP
Sbjct: 369 AILGIGRIAQKPIVKDGE--IVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN---NP 423

Query: 906 D 906
           +
Sbjct: 424 E 424

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P65636|ODP2_STAAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=pdhC PE=1 SV=1

 Score =  162 bits (411), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 81/481 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  I E DV+ EV++DK+ V I S   GTV +V 
Sbjct: 3   FEFRLPDIGEGIHEGEIVKWF--VKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVM 60

Query: 508 YGEGDVALVGKPLLDIEVED----------------EGVAAEEADSLDRKAAPGVSEVNT 551
             EG VA+VG  ++ I+  D                E  A EEA +     A    EV+ 
Sbjct: 61  VEEGTVAVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDE 120

Query: 552 PDT-SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN--SPSDETNPAHTAHVR 608
             T    P+   +     ++ K + G+GK GR+ KED+  Y+N  +P+     A +A   
Sbjct: 121 NRTVKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAYLNGGAPTASNESAASATSE 180

Query: 609 EASNVISIRGYV--KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           E +   +    V  +G F   TE   IP++R                             
Sbjct: 181 EVAETPAAPAAVSLEGDFPETTE--KIPAMR----------------------------- 209

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
                            R   K M  S    +T P + L +E+D   L D + +   +  
Sbjct: 210 -----------------RAIAKAMVNSK---HTAPHVTLMDEIDVQALWDHRKKFKEIAA 249

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
           E+   KLT++P+ +KAL   + ++P LN S +     I+     NI IA DT  GL+VP 
Sbjct: 250 EQ-GTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPV 308

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K  ++  +  I+ E+  +   + +GK+   +++G T ++SN+G+ GG    P+I   +V
Sbjct: 309 VKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEV 368

Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
            I+  G+I   P   D E  IVA  +L ++ + DHR +DGAT   A    K L N   NP
Sbjct: 369 AILGIGRIAQKPIVKDGE--IVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN---NP 423

Query: 906 D 906
           +
Sbjct: 424 E 424

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain N315) (taxid: 158879)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P65635|ODP2_STAAM Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhC PE=1 SV=1

 Score =  162 bits (411), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 216/481 (44%), Gaps = 81/481 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  I E DV+ EV++DK+ V I S   GTV +V 
Sbjct: 3   FEFRLPDIGEGIHEGEIVKWF--VKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVM 60

Query: 508 YGEGDVALVGKPLLDIEVED----------------EGVAAEEADSLDRKAAPGVSEVNT 551
             EG VA+VG  ++ I+  D                E  A EEA +     A    EV+ 
Sbjct: 61  VEEGTVAVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDE 120

Query: 552 PDT-SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN--SPSDETNPAHTAHVR 608
             T    P+   +     ++ K + G+GK GR+ KED+  Y+N  +P+     A +A   
Sbjct: 121 NRTVKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAYLNGGAPTASNESAASATSE 180

Query: 609 EASNVISIRGYV--KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           E +   +    V  +G F   TE   IP++R                             
Sbjct: 181 EVAETPAAPAAVSLEGDFPETTE--KIPAMR----------------------------- 209

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
                            R   K M  S    +T P + L +E+D   L D + +   +  
Sbjct: 210 -----------------RAIAKAMVNSK---HTAPHVTLMDEIDVQALWDHRKKFKEIAA 249

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
           E+   KLT++P+ +KAL   + ++P LN S +     I+     NI IA DT  GL+VP 
Sbjct: 250 EQ-GTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDRGLLVPV 308

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K  ++  +  I+ E+  +   + +GK+   +++G T ++SN+G+ GG    P+I   +V
Sbjct: 309 VKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPVINHPEV 368

Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
            I+  G+I   P   D E  IVA  +L ++ + DHR +DGAT   A    K L N   NP
Sbjct: 369 AILGIGRIAQKPIVKDGE--IVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN---NP 423

Query: 906 D 906
           +
Sbjct: 424 E 424

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5HQ74|ODP2_STAEQ Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhC PE=3 SV=1

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/485 (28%), Positives = 214/485 (44%), Gaps = 86/485 (17%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   +  G  I E DV+ EV++DK+ V I S   GTV +V 
Sbjct: 3   FEFRLPDIGEGIHEGEIVKWF--IKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVL 60

Query: 508 YGEGDVALVGKPLLDI----------------------EVEDEGVAAEEADSLDRKAAPG 545
             EG VA+VG  ++ I                      E E E    EEA S   +    
Sbjct: 61  VDEGTVAVVGDVIVKIDAPDAEEMQFKGHGDDEDSKKEEKEQESPVQEEASSTQSQEKTE 120

Query: 546 VSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNP---- 601
           V E  T      P+   +   N ++ K + G+GK GR+ KEDI  Y+N  S E       
Sbjct: 121 VDESKT--VKAMPSVRKYARENGVNIKAVNGSGKNGRITKEDIDAYLNGGSSEEGSNTSA 178

Query: 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNS 661
           A  +   +  N  + +   +G F   TE   IP++R                        
Sbjct: 179 ASESTSSDVVNASATQALPEGDFPETTE--KIPAMR------------------------ 212

Query: 662 PSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQV 721
                                 +   K M  S    +T P + L +E+D  +L D + + 
Sbjct: 213 ----------------------KAIAKAMVNS---KHTAPHVTLMDEIDVQELWDHRKKF 247

Query: 722 SALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHG 781
             +  E+   KLT++P+ +KAL   + ++P LN S +     ++     NI IA DT  G
Sbjct: 248 KEIAAEQ-GTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEVVHKHYWNIGIAADTDKG 306

Query: 782 LVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
           L+VP +K  ++  + +I+ E+  +   + +GK+   +++G T ++SN+G+ GG    P+I
Sbjct: 307 LLVPVVKHADRKSIFEISDEINELAVKARDGKLTSEEMKGATCTISNIGSAGGQWFTPVI 366

Query: 842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENI 901
              +V I+  G+I   P    +  IVA  +L ++ + DHR +DGAT   A    K L N 
Sbjct: 367 NHPEVAILGIGRIAQKPIV-KDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN- 424

Query: 902 LVNPD 906
             NP+
Sbjct: 425 --NPE 427

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1045
224057323	493	PREDICTED: lipoamide acyltransferase com	0.395	0.837	0.392	1e-84
326925002	674	PREDICTED: lipoamide acyltransferase com	0.433	0.672	0.366	1e-83
432853434	498	PREDICTED: lipoamide acyltransferase com	0.409	0.859	0.395	1e-82
449268114	474	hypothetical protein A306_13406, partial	0.425	0.938	0.369	1e-82
355682807	473	dihydrolipoamide branched chain transacy	0.388	0.858	0.383	2e-82
397474090	482	PREDICTED: lipoamide acyltransferase com	0.395	0.856	0.384	4e-82
392494079	482	lipoamide acyltransferase component of b	0.395	0.856	0.384	4e-82
426330491	482	PREDICTED: lipoamide acyltransferase com	0.396	0.858	0.387	5e-82
45382815	493	lipoamide acyltransferase component of b	0.430	0.912	0.364	6e-82
179354	477	branched chain acyltransferase precursor	0.396	0.867	0.387	6e-82

>gi|224057323|ref|XP_002188172.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Taeniopygia guttata]

 Score =  322 bits (824), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 182/464 (39%), Positives = 266/464 (57%), Gaps = 51/464 (10%)

Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
           +++QF L+DIGEGI EV +KEW   + EG  +++FD +CEV+SDKASVTITSRY G +RK
Sbjct: 63  QIVQFKLSDIGEGITEVTVKEWY--IKEGDSVSQFDSICEVQSDKASVTITSRYDGVIRK 120

Query: 506 VYYGEGDVALVGKPLLDIEVE-DEGVAAEEADSLDRKAAPGVS-------EVNTPDTSDQ 557
           ++Y   D A VGKPL+DIE++  +GVA+EE    D    P VS       E+    T   
Sbjct: 121 LHYSIDDTAFVGKPLVDIEIDASKGVASEE----DVVETPPVSHEEHTHQEIKGHKTLAT 176

Query: 558 PNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIR 617
           P        N I   E+ GTGK  R+LKEDI+ Y+   +    P                
Sbjct: 177 PAVRRLAMENNIKLSEVVGTGKDNRILKEDILNYLAKQTGAILPLSP------------- 223

Query: 618 GYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREA 677
                      +A  +P  R  E V        +K         P   + P   +   E 
Sbjct: 224 -----------KAEIVPPQRKAEAVPAAPKDKARK--------IPVPVSRPLAFS---EK 261

Query: 678 SNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMP 737
               P+ G+ K M K+M+ A  IP    ++E+D TQL  ++ ++  L + +  +KL++MP
Sbjct: 262 DKTEPVTGFQKAMVKTMSAALKIPHFGYSDEIDLTQLVQLREELKPLAEIR-GVKLSFMP 320

Query: 738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLD 797
           FFIKA SL + ++PILNAS+D   +N+     HNI +A+DT+ GL+VPN+K+V    + D
Sbjct: 321 FFIKAASLGLLQYPILNASLDENCQNVTYKASHNIGVAMDTEQGLIVPNVKNVQVCSVFD 380

Query: 798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLL 857
           I  EL R+Q     G++   D+ GGT ++SN+G +GGT  +P+I+P +V I A GKIQ+L
Sbjct: 381 IAVELNRLQSLGSAGQLGTSDLTGGTFTLSNIGTIGGTYAKPVILPPEVAIGALGKIQVL 440

Query: 858 PRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           PRF+++  ++   I+NV+W+ADHR++DGAT+AR + LWKS LEN
Sbjct: 441 PRFNSKGEVIKAQIMNVSWSADHRIIDGATMARFSNLWKSYLEN 484

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326925002|ref|XP_003208711.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Meleagris gallopavo]

 Score =  318 bits (815), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 285/513 (55%), Gaps = 60/513 (11%)

Query: 398 HVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCI-RHKLIQFNLADIG 456
           HVR  S++  I+     +F        H         H    TS + R +++QF L+DIG
Sbjct: 203 HVRSCSSIRFIKSKYACVFDKSAFNFSHQ--------HRFFRTSAVSRGQIVQFKLSDIG 254

Query: 457 EGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALV 516
           EGI EV +KEW   + EG  +++FD +CEV+SDKASVTITSRY G +RK++Y   ++A V
Sbjct: 255 EGITEVTVKEWY--IKEGDSVSQFDSICEVQSDKASVTITSRYDGVIRKLHYNLDEIAYV 312

Query: 517 GKPLLDIEVE-DEGVAAEEADSLDRKAAPGVS-------EVNTPDTSDQPNETLHKDPNK 568
           GKPL+DIE++  +GVA EE    D    P +S       E+    T   P        N 
Sbjct: 313 GKPLVDIEIDASKGVAPEE----DVVETPAMSHEEHTHQEIKGHKTLATPAVRRLAMENN 368

Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMT 628
           I   E+ GTGK  R+LKEDI+ ++   +    P         + +I+           ++
Sbjct: 369 IKLSEVIGTGKDNRILKEDILNFLAKQTGAILPP-----SPKAEIIA----------PLS 413

Query: 629 EANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVK 688
           ++ T+P    T   D  +   +     I +  S  D+T P              + G+ K
Sbjct: 414 KSETVP----TAPKDKARKIPIPISRPIVF--SGKDKTEP--------------VTGFHK 453

Query: 689 GMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMT 748
            M K+M+ A  IP     +E+D T L  ++ ++  L Q +  +KL++MPFFIKA SL + 
Sbjct: 454 AMVKTMSAALKIPHFGYCDEIDLTHLVQLREELKPLAQSR-GIKLSFMPFFIKAASLGLL 512

Query: 749 EHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGC 808
           ++PILNAS+D + +N+     HNI +A+DT+ GL+VPN+K+V    + +I  EL R+Q  
Sbjct: 513 QYPILNASLDESCQNVTYKASHNIGVAMDTEQGLIVPNVKNVQVSSIFEIASELNRLQAL 572

Query: 809 SHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVA 868
              G++   D+ GGT ++SN+G +GGT  + +I+P +V I A GKIQ+LPRF+ +  +  
Sbjct: 573 GSAGQLGTNDLTGGTFTLSNIGTIGGTYAKAVILPPEVAIGALGKIQVLPRFNGKGEVFK 632

Query: 869 KCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
             I+NV+W+ADHR++DGAT+AR + LWKS LEN
Sbjct: 633 AQIMNVSWSADHRIIDGATMARFSNLWKSYLEN 665

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432853434|ref|XP_004067705.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Oryzias latipes]

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 186/470 (39%), Positives = 266/470 (56%), Gaps = 42/470 (8%)

Query: 437 HLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTIT 496
           H  ++C    ++QF L+DIGEGI EV +KEW   V EG ++++FD +CEV+SDKASVTIT
Sbjct: 56  HAASACC-GPVVQFKLSDIGEGIMEVTVKEWY--VKEGDKVSQFDSICEVQSDKASVTIT 112

Query: 497 SRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGV----SEVNTP 552
           SRY G ++K+YY     ALVGKPL+DIE E      +E D ++  A         E+   
Sbjct: 113 SRYDGVIKKLYYDVDATALVGKPLVDIETESSSEVIQEEDVVETPAMAREEHTHQEIKGH 172

Query: 553 DTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASN 612
            T   P        N I   E+ GTGK GR+LKEDI+ ++   +    P   A V+E   
Sbjct: 173 KTQATPAVRRLAIENNIKLSEVVGTGKDGRILKEDIMNFLAKQTGAILPP--APVQE--- 227

Query: 613 VISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTA 672
            I   G       +     T PS                     T + +P   T P  T 
Sbjct: 228 -IQTPGPSPPSAAAPAGRPTSPS---------------------TVVKAPPPRTTPVFTG 265

Query: 673 H-VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRL 731
             V E     P++G+ K M K+MT A  IP     +EVD ++L  ++ ++  + + +  +
Sbjct: 266 KDVTE-----PVKGFHKAMVKTMTAALKIPHFGYCDEVDLSRLVALRTELKPIAESR-GV 319

Query: 732 KLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVN 791
           KL+YMPFFIKA SL +   PILNAS+D   +NI     HNI +A+DT  GL+VPN+K+V 
Sbjct: 320 KLSYMPFFIKAASLGLLHFPILNASVDEDCQNITYRASHNIGLAMDTSQGLLVPNVKNVQ 379

Query: 792 KLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAF 851
            L + +I +EL R+Q     G++    + GGT ++SN+G++GGT  +P+I+P +V I A 
Sbjct: 380 LLSVFEIAQELNRLQALGAAGQLGTAHLSGGTFTLSNIGSIGGTYAKPVILPPEVAIGAL 439

Query: 852 GKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           GKIQ+LPRF A  ++V   I+NV+W+ADHRV+DGAT+ R + LW+  LEN
Sbjct: 440 GKIQVLPRFGAGNQVVRAHIMNVSWSADHRVIDGATMCRFSNLWREYLEN 489

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449268114|gb|EMC78984.1| hypothetical protein A306_13406, partial [Columba livia]

 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 191/517 (36%), Positives = 274/517 (52%), Gaps = 72/517 (13%)

Query: 399 VREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIR-HKLIQFNLADIGE 457
           VR  S++  I+     +F   T    H              TS +   +++QF LADIGE
Sbjct: 6   VRSCSSIRFIKSKYVCVFDKSTLKFSHQ--------QRLFRTSAVSCGQIVQFKLADIGE 57

Query: 458 GIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVG 517
           GI EV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G +RK++Y   + A VG
Sbjct: 58  GITEVTVKEWY--VKEGDSVSQFDSICEVQSDKASVTITSRYDGIIRKLHYNVDETAYVG 115

Query: 518 KPLLDIEVEDEGVAAEEADSLDRKAAPGVS-------EVNTPDTSDQPNETLHKDPNKID 570
           KPL+DIE +     A E D ++    P +S       E+    T   P        N I 
Sbjct: 116 KPLVDIETDASKDVAPEEDVVE---TPPMSHEEHTHQEIKGHKTLATPAVRRLAMENNIK 172

Query: 571 TKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEA 630
             E+ GTGK  R+LKEDI+ Y+   +    P                           +A
Sbjct: 173 LSEVIGTGKDNRILKEDILNYLAKQTGAILPPSP------------------------KA 208

Query: 631 NTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREA------SNVIPIR 684
             IP L  +E V                   P+   + AH   V             PI 
Sbjct: 209 EIIPPLPKSETV-------------------PAAPKDKAHKIPVSRPIVFSGKDKTEPIT 249

Query: 685 GYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALS 744
           G+ K M K+M+ A  IP     +E+D TQL  ++ ++  L Q +  +KL++MPFFIKA S
Sbjct: 250 GFQKAMVKTMSAALKIPHFGYCDEIDLTQLVQLREELKPLAQLR-GVKLSFMPFFIKAAS 308

Query: 745 LCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLR 804
           L + ++PILNAS+D + +N+     HNI +A+DT+ GL+VPN+K+V    + +I  EL R
Sbjct: 309 LGLLQYPILNASLDESCQNVTYKASHNIGVAMDTEQGLIVPNVKNVQVCSVFEIASELNR 368

Query: 805 IQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEM 864
           +Q     G++   D+ GGT ++SN+G +GGT  +P+I+P +V I A GKIQLLPRF+ + 
Sbjct: 369 LQSLGSAGQLGTNDLTGGTFTLSNIGTIGGTYAKPVILPPEVAIGALGKIQLLPRFNGKG 428

Query: 865 RIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
            +    I+NV+W+ADHR++DGAT+AR + LWKS LEN
Sbjct: 429 EVFKAQIMNVSWSADHRIIDGATMARFSNLWKSYLEN 465

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355682807|gb|AER96987.1| dihydrolipoamide branched chain transacylase E2 [Mustela putorius furo]

 Score =  313 bits (803), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/472 (38%), Positives = 262/472 (55%), Gaps = 66/472 (13%)

Query: 440 TSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRY 499
           T+ ++ +++QF L+DIGEGIREV IKEW   V EG  +++FD +CEV+SDKASVTITSRY
Sbjct: 49  TAALQGQIVQFKLSDIGEGIREVTIKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRY 106

Query: 500 KGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS-------EVNTP 552
            G ++K+YY   D+A VGKPL+DIE E   +   E D ++    P VS       E+   
Sbjct: 107 DGVIKKLYYNLDDIAYVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTHQEIKGQ 161

Query: 553 DTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASN 612
            T   P        N I   E+ G+GK GR+LKEDI+ Y+   +    P           
Sbjct: 162 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILP----------- 210

Query: 613 VISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTA 672
                                PS                K +I+     P D T P   +
Sbjct: 211 ---------------------PS---------------PKAEIVPPAPKPKDRTIPIPVS 234

Query: 673 H---VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKF 729
                       PI+G+ K M K+M+ A  IP     +EVD T+L  ++ ++ ++   + 
Sbjct: 235 KPPVFIGKDKTEPIKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKSIASAR- 293

Query: 730 RLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKS 789
            +KLT+MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN+K+
Sbjct: 294 GIKLTFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKN 353

Query: 790 VNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIV 849
           V    + +I  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I 
Sbjct: 354 VQMCSIFEIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTYAKPVILPPEVAIG 413

Query: 850 AFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           A G I+ LPRF+ E  +    I+NV+W+ADHR++DGAT++R + LWKS LEN
Sbjct: 414 ALGSIKALPRFNQEGEVYKAQIMNVSWSADHRIIDGATMSRFSNLWKSYLEN 465

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397474090|ref|XP_003808523.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Pan paniscus] gi|410254896|gb|JAA15415.1| dihydrolipoamide branched chain transacylase E2 [Pan troglodytes] gi|410254898|gb|JAA15416.1| dihydrolipoamide branched chain transacylase E2 [Pan troglodytes] gi|410254900|gb|JAA15417.1| dihydrolipoamide branched chain transacylase E2 [Pan troglodytes] gi|410293998|gb|JAA25599.1| dihydrolipoamide branched chain transacylase E2 [Pan troglodytes] gi|410294000|gb|JAA25600.1| dihydrolipoamide branched chain transacylase E2 [Pan troglodytes]

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/476 (38%), Positives = 270/476 (56%), Gaps = 63/476 (13%)

Query: 435 HHHLHT-SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV 493
           HH L T + +R +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASV
Sbjct: 51  HHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASV 108

Query: 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS------ 547
           TITSRY G ++K+YY   D+A VGKPL+DIE E   +   E D ++    P VS      
Sbjct: 109 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTH 163

Query: 548 -EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH 606
            E+    T   P        N I   E+ G+GK GR+LKEDI+ Y+              
Sbjct: 164 QEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLE------------- 210

Query: 607 VREASNVISIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDE 665
            ++   ++     V+ M       + T+P L             V K  + T      D+
Sbjct: 211 -KQTGAILPPSPKVEIMPPPPKPKDMTVPIL-------------VSKPPVFT----GKDK 252

Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALY 725
           T P              I+G+ K M K+M+ A  IP     +E+D T+L  ++ ++  + 
Sbjct: 253 TEP--------------IKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIA 298

Query: 726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVP 785
             +  +KL++MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VP
Sbjct: 299 FAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVP 357

Query: 786 NIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ 845
           N+K+V    + DI  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +
Sbjct: 358 NVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPE 417

Query: 846 VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           V I A G I+ +PRF+ +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct: 418 VAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 473

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392494079|ref|NP_001909.3| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial precursor [Homo sapiens] gi|400668|sp|P11182.3|ODB2_HUMAN RecName: Full=Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; AltName: Full=Branched-chain alpha-keto acid dehydrogenase complex component E2; Short=BCKAD-E2; Short=BCKADE2; AltName: Full=Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; AltName: Full=Dihydrolipoamide branched chain transacylase; AltName: Full=Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; Flags: Precursor gi|30490|emb|CAA47285.1| transacylase [Homo sapiens] gi|16741763|gb|AAH16675.1| Dihydrolipoamide branched chain transacylase E2 [Homo sapiens] gi|30583583|gb|AAP36036.1| dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex; maple syrup urine disease) [Homo sapiens] gi|61359897|gb|AAX41783.1| dihydrolipoamide branched chain transacylase [synthetic construct] gi|61359903|gb|AAX41784.1| dihydrolipoamide branched chain transacylase [synthetic construct] gi|119593369|gb|EAW72963.1| dihydrolipoamide branched chain transacylase E2 [Homo sapiens] gi|189053756|dbj|BAG36008.1| unnamed protein product [Homo sapiens]

 Score =  313 bits (801), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 183/476 (38%), Positives = 270/476 (56%), Gaps = 63/476 (13%)

Query: 435 HHHLHT-SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV 493
           HH L T + +R +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASV
Sbjct: 51  HHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASV 108

Query: 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS------ 547
           TITSRY G ++K+YY   D+A VGKPL+DIE E   +   E D ++    P VS      
Sbjct: 109 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTH 163

Query: 548 -EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH 606
            E+    T   P        N I   E+ G+GK GR+LKEDI+ Y+              
Sbjct: 164 QEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLE------------- 210

Query: 607 VREASNVISIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDE 665
            ++   ++     V+ M       + T+P L             V K  + T      D+
Sbjct: 211 -KQTGAILPPSPKVEIMPPPPKPKDMTVPIL-------------VSKPPVFT----GKDK 252

Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALY 725
           T P              I+G+ K M K+M+ A  IP     +E+D T+L  ++ ++  + 
Sbjct: 253 TEP--------------IKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIA 298

Query: 726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVP 785
             +  +KL++MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VP
Sbjct: 299 FAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVP 357

Query: 786 NIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ 845
           N+K+V    + DI  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +
Sbjct: 358 NVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPE 417

Query: 846 VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           V I A G I+ +PRF+ +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct: 418 VAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 473

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426330491|ref|XP_004026244.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Gorilla gorilla gorilla]

 Score =  312 bits (800), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 268/475 (56%), Gaps = 61/475 (12%)

Query: 435 HHHLHT-SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV 493
           HH L T + +R +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASV
Sbjct: 51  HHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASV 108

Query: 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS------ 547
           TITSRY G ++K+YY   D+A VGKPL+DIE E   +   E D ++    P VS      
Sbjct: 109 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTH 163

Query: 548 -EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH 606
            E+    T   P        N I   E+ G+GK GR+LKEDI+ Y+           T  
Sbjct: 164 QEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK--------QTGA 215

Query: 607 VREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           +   S  + I            +  T+P L             V K  + T      D+T
Sbjct: 216 ILPPSPKVEIM-----PPPPKPKDMTVPIL-------------VSKPPVFT----GKDKT 253

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
            P              I+G+ K M K+M+ A  IP     +E+D T+L  ++ ++  +  
Sbjct: 254 EP--------------IKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIAF 299

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
            +  +KL++MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN
Sbjct: 300 AR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPN 358

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K+V    + DI  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V
Sbjct: 359 VKNVQICSIFDIATELNRLQKLGSVGQLGTTDLTGGTFTLSNIGSIGGTFAKPVIMPPEV 418

Query: 847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
            I A G I+ +PRF+ +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct: 419 AIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 473

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45382815|ref|NP_989987.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial precursor [Gallus gallus] gi|12964602|dbj|BAB32667.1| branched-chain alpha-keto acid dihydrolipoyl acyltransferase [Gallus gallus]

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 278/516 (53%), Gaps = 66/516 (12%)

Query: 398 HVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRH-KLIQFNLADIG 456
           H+R  S++  I+     +F        H              TS + H +++QF L+DIG
Sbjct: 22  HIRSCSSIRFIKSKYACVFDKSAFNFSHQ--------QRLFRTSAVSHGQIVQFKLSDIG 73

Query: 457 EGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALV 516
           EGI EV +KEW   + EG  +++FD +CEV+SDKASVTITSRY G +RK++Y   ++A V
Sbjct: 74  EGITEVTVKEWY--IKEGDSVSQFDSICEVQSDKASVTITSRYDGIIRKLHYNLDEIAYV 131

Query: 517 GKPLLDIEVE-DEGVAAEEADSLDRKAAPGVS-------EVNTPDTSDQPNETLHKDPNK 568
           GKPL+DIE++  +GVA EE    D    P +S       E+    T   P        N 
Sbjct: 132 GKPLVDIEIDASKGVAPEE----DVVETPAMSHEEHTHQEIKGHKTLATPAVRRLAMENN 187

Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMT 628
           I   E+ GTGK  R+LKEDI++++   +    P                           
Sbjct: 188 IKLSEVIGTGKDNRILKEDILSFLAKQTGAILPPSP------------------------ 223

Query: 629 EANTIPSLRLTEEVDTTQLRDVKKEDIIT---YMNSPSDETNPAHTAHVREASNVIPIRG 685
           +A  I  L  +E V T      +K  I      + S  D+T P              I G
Sbjct: 224 KAEIIAPLSKSETVPTAPKDKARKIPIPISRPVVFSGKDKTEP--------------ITG 269

Query: 686 YVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSL 745
           + K M K+M+ A  IP     +E+D T L  ++ ++  L Q +  +KL++MPFFIKA SL
Sbjct: 270 FHKAMVKTMSAALKIPHFGYCDEIDLTHLVQLREELKPLAQSR-GVKLSFMPFFIKAASL 328

Query: 746 CMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRI 805
            + ++PILNAS+D   +N+     HNI +A+DT+ GL+VPN+K+V    + +I  EL R+
Sbjct: 329 GLLQYPILNASLDEGCQNVTYKASHNIGVAMDTEQGLIVPNVKNVQVSSIFEIASELNRL 388

Query: 806 QGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMR 865
           Q      ++   D+ GGT ++SN+G +GGT  + +I+P +V I A GKIQ+LPRF+ +  
Sbjct: 389 QALGSASQLGTNDLTGGTFTLSNIGTIGGTYAKAVILPPEVAIGALGKIQVLPRFNGKGE 448

Query: 866 IVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
           +    I+NV+W+ADHR++DGAT+AR + LWKS LEN
Sbjct: 449 VFKAQIMNVSWSADHRIIDGATMARFSNLWKSYLEN 484

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|179354|gb|AAA35589.1| branched chain acyltransferase precursor [Homo sapiens]

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 268/475 (56%), Gaps = 61/475 (12%)

Query: 435 HHHLHT-SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV 493
           HH L T + +R +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASV
Sbjct: 46  HHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASV 103

Query: 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVS------ 547
           TITSRY G ++K+YY   D+A VGKPL+DIE E   +   E D ++    P VS      
Sbjct: 104 TITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE--ALKDSEEDVVE---TPAVSHDEHTH 158

Query: 548 -EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH 606
            E+    T   P        N I   E+ G+GK GR+LKEDI+ Y+           T  
Sbjct: 159 QEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK--------QTGA 210

Query: 607 VREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET 666
           +   S  + I            +  T+P L             V K  + T      D+T
Sbjct: 211 ILPPSPKVEIM-----PPPPKPKDMTVPIL-------------VSKPPVFT----GKDKT 248

Query: 667 NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
            P              I+G+ K M K+M+ A  IP     +E+D T+L  ++ ++  +  
Sbjct: 249 EP--------------IKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIAF 294

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
            +  +KL++MPFF+KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN
Sbjct: 295 AR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPN 353

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           +K+V    + DI  EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V
Sbjct: 354 VKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPEV 413

Query: 847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
            I A G I+ +PRF+ +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct: 414 AIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 468

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1045
UNIPROTKB|P11182	482	DBT "Lipoamide acyltransferase	0.208	0.452	0.436	2.5e-86
ZFIN|ZDB-GENE-050320-85	493	dbt "dihydrolipoamide branched	0.208	0.442	0.445	7.1e-85
MGI|MGI:105386	482	Dbt "dihydrolipoamide branched	0.237	0.514	0.411	8.5e-83
UNIPROTKB|P11181	482	DBT "Lipoamide acyltransferase	0.208	0.452	0.436	1.1e-82
UNIPROTKB|F1S563	482	DBT "Uncharacterized protein"	0.237	0.514	0.399	1.2e-82
UNIPROTKB|E2RQG4	482	DBT "Uncharacterized protein"	0.208	0.452	0.427	3.2e-82
UNIPROTKB|F1P1X9	493	DBT "Uncharacterized protein"	0.208	0.442	0.440	1.4e-81
WB|WBGene00014054	448	ZK669.4 [Caenorhabditis elegan	0.248	0.580	0.391	1.1e-75
TIGR_CMR|SO_2341	535	SO_2341 "alpha keto acid dehyd	0.228	0.446	0.419	6.3e-71
UNIPROTKB|G4MSC5	523	MGG_04449 "Branched-chain alph	0.204	0.409	0.388	1.2e-70

UNIPROTKB|P11182 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 2.5e-86, Sum P(4) = 2.5e-86
 Identities = 96/220 (43%), Positives = 148/220 (67%)

Query:   682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
             PI+G+ K M K+M+ A  IP     +E+D T+L  ++ ++  +   +  +KL++MPFF+K
Sbjct:   255 PIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKPIAFAR-GIKLSFMPFFLK 313

Query:   742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
             A SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN+K+V    + DI  E
Sbjct:   314 AASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQICSIFDIATE 373

Query:   802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
             L R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ +PRF+
Sbjct:   374 LNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPPEVAIGALGSIKAIPRFN 433

Query:   862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
              +  +    I+NV+W+ADHRV+DGAT++R + LWKS LEN
Sbjct:   434 QKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLEN 473

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0005947 "mitochondrial alpha-ketoglutarate dehydrogenase complex" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-050320-85 dbt "dihydrolipoamide branched chain transacylase E2" [Danio rerio (taxid:7955)]

 Score = 506 (183.2 bits), Expect = 7.1e-85, Sum P(4) = 7.1e-85
 Identities = 98/220 (44%), Positives = 150/220 (68%)

Query:   682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
             PI+G+ K M K+M+ A  IP     +EVD +QL  +++++  L + +  +KL+YMPFFIK
Sbjct:   266 PIKGFQKAMVKTMSAALKIPHFGYKDEVDLSQLVRLRSELKGLTESR-GVKLSYMPFFIK 324

Query:   742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
             A SL +   PILN+S+D    +I     HNI +A+DT  GL+VPN+K++  L + +I  E
Sbjct:   325 AASLALLHFPILNSSLDENCTSITYKAAHNIGLAMDTSQGLLVPNVKNIQMLSVFEIAVE 384

Query:   802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
             L R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A GKIQ+LPRF+
Sbjct:   385 LNRLQILGASGQLGTSDLTGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFN 444

Query:   862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
              +  +V   I+NV+W+ADHR++DGAT+ R + LW+S LEN
Sbjct:   445 HKDEVVKAHIMNVSWSADHRIIDGATMCRFSNLWRSYLEN 484

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:105386 Dbt "dihydrolipoamide branched chain transacylase E2" [Mus musculus (taxid:10090)]

 Score = 500 (181.1 bits), Expect = 8.5e-83, Sum P(3) = 8.5e-83
 Identities = 104/253 (41%), Positives = 155/253 (61%)

Query:   652 KEDIITYMNSPSDETNPAHTAH---VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEE 708
             K +I      P D T P   A            P+ G+ K M K+M+ A  IP     +E
Sbjct:   222 KSEITPPPPQPKDRTFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCDE 281

Query:   709 VDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNP 768
             +D TQL  ++ ++  +   +  +KL++MPFF+KA SL + + PILNAS+D   +NI    
Sbjct:   282 IDLTQLVKLREELKPVALAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKA 340

Query:   769 DHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSN 828
              HNI IA+DT+ GL+VPN+K+V    + +I  EL R+Q     G++   D+ GGT ++SN
Sbjct:   341 SHNIGIAMDTELGLIVPNVKNVQVRSVFEIAMELNRLQKLGSSGQLGTTDLTGGTFTLSN 400

Query:   829 VGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATV 888
             +G++GGT  +P+I+P +V I A G I+ LPRFD +  +    I+NV+W+ADHRV+DGAT+
Sbjct:   401 IGSIGGTYAKPVILPPEVAIGALGAIKALPRFDQKGDVYKAQIMNVSWSADHRVIDGATM 460

Query:   889 ARAATLWKS-LEN 900
             +R + LWKS LEN
Sbjct:   461 SRFSNLWKSYLEN 473

GO:0005739 "mitochondrion" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|P11181 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 499 (180.7 bits), Expect = 1.1e-82, Sum P(3) = 1.1e-82
 Identities = 96/220 (43%), Positives = 148/220 (67%)

Query:   682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
             P++G+ K M K+M+ A  IP     +EVD T+L  ++ ++  +   +  +KL++MPFF+K
Sbjct:   255 PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLK 313

Query:   742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
             A SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN+K+V    + +I  E
Sbjct:   314 AASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATE 373

Query:   802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
             L R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ LPRF+
Sbjct:   374 LNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFN 433

Query:   862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
              +  +    I+NV+W+ADHR++DGATV+R + LWKS LEN
Sbjct:   434 EKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLEN 473

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

UNIPROTKB|F1S563 DBT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 491 (177.9 bits), Expect = 1.2e-82, Sum P(3) = 1.2e-82
 Identities = 101/253 (39%), Positives = 156/253 (61%)

Query:   652 KEDIITYMNSPSDETNPAHTAH---VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEE 708
             K +II     P D T P   +            PI+G+ K M K+M+ A  IP     +E
Sbjct:   222 KAEIIPPPPKPKDRTIPIPISKPPVFTGKDRTEPIKGFHKAMVKTMSAALKIPHFGYCDE 281

Query:   709 VDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNP 768
             VD T+L  ++ ++  +   +  +KLT+MPFF+KA SL + + PILNAS+D   ++I    
Sbjct:   282 VDLTELVKLREELKPIALAR-GIKLTFMPFFLKAASLGLLQFPILNASMDENCQSITYKA 340

Query:   769 DHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSN 828
              HNI +A+DT  GL+VPN+K+V    + ++  EL R+Q     G++   D+ GGT ++SN
Sbjct:   341 SHNIGVAMDTDQGLIVPNVKNVQICSIFEVATELNRLQKLGSAGQLSTPDLTGGTFTLSN 400

Query:   829 VGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATV 888
             +G++GGT  +P+I+P +V I A G I+ LPRF+ +  +    I+NV+W+ADHR++DGAT+
Sbjct:   401 IGSIGGTYAKPVILPPEVAIGALGAIKALPRFNEKGDVHKAQIMNVSWSADHRIIDGATM 460

Query:   889 ARAATLWKS-LEN 900
             +R + LWKS LEN
Sbjct:   461 SRFSNLWKSYLEN 473

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

UNIPROTKB|E2RQG4 DBT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 491 (177.9 bits), Expect = 3.2e-82, Sum P(3) = 3.2e-82
 Identities = 94/220 (42%), Positives = 148/220 (67%)

Query:   682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
             PI+G+ K M K+M+ A  IP     +EVD T+L  ++ ++  +   +  +KL++MPFF+K
Sbjct:   255 PIKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLK 313

Query:   742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
             A SL + + PILNAS+D   ++I     HNI +A+DT+ GL+VPN+K+V    + +I  E
Sbjct:   314 AASLGLLQFPILNASVDENCQHITYKASHNIGVAMDTEQGLIVPNVKNVQICSIFEIATE 373

Query:   802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
             L R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ LPRF+
Sbjct:   374 LNRLQKLGSIGQLSTTDLAGGTFTLSNIGSIGGTYTKPVILPPEVAIGALGSIKALPRFN 433

Query:   862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
              +  +    I+NV+W+ADHR++DGAT++R + LWKS LEN
Sbjct:   434 HKGEVYKAQIMNVSWSADHRIIDGATMSRFSNLWKSYLEN 473

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

UNIPROTKB|F1P1X9 DBT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 506 (183.2 bits), Expect = 1.4e-81, Sum P(3) = 1.4e-81
 Identities = 97/220 (44%), Positives = 147/220 (66%)

Query:   682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
             PI G+ K M K+M+ A  IP     +E+D T L  ++ ++  L Q +  +KL++MPFFIK
Sbjct:   266 PITGFHKAMVKTMSAALKIPHFGYCDEIDLTHLVQLREELKPLAQSR-GVKLSFMPFFIK 324

Query:   742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
             A SL + ++PILNAS+D   +N+     HNI +A+DT+ GL+VPN+K+V    + +I  E
Sbjct:   325 AASLGLLQYPILNASLDEGCQNVTYKASHNIGVAMDTEQGLIVPNVKNVQVSSIFEIASE 384

Query:   802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
             L R+Q      ++   D+ GGT ++SN+G +GGT  + +I+P +V I A GKIQ+LPRF+
Sbjct:   385 LNRLQALGSASQLGTNDLTGGTFTLSNIGTIGGTYAKAVILPPEVAIGALGKIQVLPRFN 444

Query:   862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
              +  +    I+NV+W+ADHR++DGAT+AR + LWKS LEN
Sbjct:   445 GKGEVFKAQIMNVSWSADHRIIDGATMARFSNLWKSYLEN 484

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

WB|WBGene00014054 ZK669.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 503 (182.1 bits), Expect = 1.1e-75, Sum P(2) = 1.1e-75
 Identities = 108/276 (39%), Positives = 163/276 (59%)

Query:   636 LRLTEEVDTTQLRDVKKEDIITYMNS-PSDETNPA---HTAH-VREASN----------V 680
             ++L E   T +   V KED++ ++   P+D T+ +    T H   + S+           
Sbjct:   160 IKLAEVRGTGKDGRVLKEDVLKFLGQVPADHTSGSTNIRTTHQAPQPSSKSYEPLKEDVA 219

Query:   681 IPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFI 740
             +PIRGY + M K+MTEA  IP     +E++   L   + ++    +E+  +KL+YMPFFI
Sbjct:   220 VPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVKYRAELKEFAKER-HIKLSYMPFFI 278

Query:   741 KALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITR 800
             KA SL + E+P LN++ D   EN++    HNI +A+DT  GLVVPNIK+  +  + +I +
Sbjct:   279 KAASLALLEYPSLNSTTDEKMENVIHKASHNICLAMDTPGGLVVPNIKNCEQRSIFEIAQ 338

Query:   801 ELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF 860
             EL R+     + ++   D+  GT S+SN+GN+GGT   P++ P QV I A GKI+ LPRF
Sbjct:   339 ELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIGGTYASPVVFPPQVAIGAIGKIEKLPRF 398

Query:   861 DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWK 896
             D    ++   I+ V+W ADHRVVDGAT+AR +  WK
Sbjct:   399 DKHDNVIPVNIMKVSWCADHRVVDGATMARFSNRWK 434

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TIGR_CMR|SO_2341 SO_2341 "alpha keto acid dehydrogenase complex, E2 component" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 496 (179.7 bits), Expect = 6.3e-71, Sum P(3) = 6.3e-71
 Identities = 101/241 (41%), Positives = 146/241 (60%)

Query:   657 TYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLR 715
             T  +S +    P   A    A  V PIRG    M K M E+ +TIP     EE D T L 
Sbjct:   282 TQQSSVTQSAVPITVASAARADIVEPIRGVKAVMAKLMVESVSTIPHFTYCEEFDLTDLV 341

Query:   716 DVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIA 775
              ++  + A Y     +KLT MPFF+KA+SL +T+ P+LN+ ++     I     HNI +A
Sbjct:   342 ALRESMKAKYSSD-EVKLTMMPFFMKAMSLALTQFPVLNSQVNADCTEITYKARHNIGMA 400

Query:   776 IDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT 835
             +D+K GL+VPN+K V    +L++  E+ R+   +  G+V P D++ GTIS+SN+G +GGT
Sbjct:   401 VDSKVGLLVPNVKDVQDKSILEVAAEITRLTNAARSGRVAPADLKEGTISISNIGALGGT 460

Query:   836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLW 895
             +  PII   +V IVA GK+Q LPRF+A+  + A+ I+ V+W+ DHRV+DG T+AR   LW
Sbjct:   461 VATPIINKPEVAIVALGKLQTLPRFNAKGEVEARQIMQVSWSGDHRVIDGGTIARFCNLW 520

Query:   896 K 896
             K
Sbjct:   521 K 521

GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=ISS

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

UNIPROTKB|G4MSC5 MGG_04449 "Branched-chain alpha-keto acid lipoamide acyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 441 (160.3 bits), Expect = 1.2e-70, Sum P(3) = 1.2e-70
 Identities = 89/229 (38%), Positives = 148/229 (64%)

Query:   690 MFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFR--------LKLTYMPFFIK 741
             MFK+MT + TIP     +E+D T L +++ +++ +               KL+Y+PF IK
Sbjct:   291 MFKTMTRSLTIPHFLYADEIDFTSLVELRTRLNRVLAAGGTGGPGTAEISKLSYLPFIIK 350

Query:   742 ALSLCMTEHPILNASID-PT---QENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLD 797
             A+SL + ++PILNA +D P+   + ++ +   HNI +A+DT  GL+VP +K+VN+  +L 
Sbjct:   351 AVSLALYQYPILNARVDIPSDGGKPSLAMRKQHNIGVAMDTPSGLLVPVVKNVNERNVLS 410

Query:   798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLL 857
             I  EL+R+Q  +  GK+ P D+ GGT+++SN+G++GGT + P++V  +V I+  G+++ +
Sbjct:   411 IAAELVRLQSLATAGKLSPADMSGGTMTVSNIGSIGGTYLSPVVVEREVAILGVGRMRTV 470

Query:   858 PRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
             P FD   ++V K + N +W ADHRVVDGAT+ARAA +   +  ++  PD
Sbjct:   471 PAFDENDKVVKKHVCNFSWCADHRVVDGATLARAANM---VRQVVEEPD 516

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1045
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	1e-107
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-86
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	5e-69
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-68
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	4e-64
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	8e-51
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	7e-47
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	7e-45
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-43
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-41
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	2e-37
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	1e-36
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	3e-36
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	2e-35
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	5e-33
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-31
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	4e-31
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-30
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-25
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	8e-25
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	1e-24
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	1e-24
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	2e-23
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	5e-23
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	4e-21
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	1e-20
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-20
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	4e-20
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	1e-19
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	5e-19
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	2e-18
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-17
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	3e-16
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-15
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-15
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	4e-15
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	3e-14
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	1e-13
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	3e-13
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	3e-13
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	4e-12
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-12
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-11
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-11
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-11
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	3e-11
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	4e-11
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	8e-11
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	8e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-10
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-09
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-08
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-08
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-08
pfam02817	39	pfam02817, E3_binding, e3 binding domain	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-07
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-07
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	7e-06
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	3e-05
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	3e-05
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	2e-04
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	2e-04
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	2e-04
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	2e-04
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	5e-04
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	5e-04
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	6e-04
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	7e-04
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	7e-04
pfam02817	39	pfam02817, E3_binding, e3 binding domain	0.002
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	0.002
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	0.002

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  339 bits (872), Expect = e-107
 Identities = 157/457 (34%), Positives = 229/457 (50%), Gaps = 61/457 (13%)

Query: 450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 509
             LA  GEGI E  +  W   V EG ++ EF  +CEV+SDKA++ ITSRYKG V ++ + 
Sbjct: 1   VPLAQTGEGIAECELLRWF--VKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFS 58

Query: 510 EGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNET-------- 561
            GD+  VG+ LL I VED      ++  L   ++  VS   + +     +          
Sbjct: 59  PGDIVKVGETLLKIMVEDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRH 118

Query: 562 LHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVK 621
           L K    ID  ++ GTGK GRVLKED++ Y                             K
Sbjct: 119 LAKQ-YGIDLNDILGTGKDGRVLKEDVLKYAAQ--------------------------K 151

Query: 622 GMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVI 681
           G+ K  + A         E   +                S  D+T              I
Sbjct: 152 GVVKDSSSAEEATIAEQEEFSTSVSTPT---------EQSYEDKT--------------I 188

Query: 682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
           P+RG+ + M K+MT A  +P     EE++   L ++K            +K T++PF IK
Sbjct: 189 PLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQEN-NTDPTVKHTFLPFLIK 247

Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
           +LS+ ++++P+LN+  +     I +   HNI +A+ T+HGLVVPNIK+V  L LL+IT+E
Sbjct: 248 SLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKE 307

Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
           L R+Q  + E K+ P DI GGTI++SN+G +GG    P++   +V I+A G+IQ +PRF 
Sbjct: 308 LSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFV 367

Query: 862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
            +  +    I+ VT  ADHRV+DGATVAR    WKS 
Sbjct: 368 DDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSY 404

Length = 416

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  289 bits (743), Expect = 1e-86
 Identities = 134/472 (28%), Positives = 207/472 (43%), Gaps = 74/472 (15%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           ++  + DIGE I EV + EW   V  G  + E   +  VE+DKA++ I S   G V+++ 
Sbjct: 120 VEVKVPDIGE-ITEVEVIEWL--VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176

Query: 508 YGEGDVALVGKPLLDIEVEDEGVAA------------EEADSLDRKAAPGVSEVNTPDTS 555
              GD   VG  L+ IEV     AA              A      AA        P  +
Sbjct: 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236

Query: 556 DQPNETLHKDP--------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHV 607
             P +  H  P          +D  +++GTGK+GR+ KED+  ++         A  A  
Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAA 296

Query: 608 REASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETN 667
                                    +P      +VD ++  +++ +              
Sbjct: 297 AAGGG----------------GLGLLP----WPKVDFSKFGEIETK-------------- 322

Query: 668 PAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
                         P+    K    ++  +  TIP +   +E D T L  ++ Q+     
Sbjct: 323 --------------PLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEA- 367

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
           EK  +KLT +PFFIKA+   + E P+ NAS+D   + +      NI  A+DT +GLVVP 
Sbjct: 368 EKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPV 427

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           IK V+K  LL+I RE+  +   + +GK+ P D+QGG  ++S++G +GGT   PII   +V
Sbjct: 428 IKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEV 487

Query: 847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
            I+  GK Q+ P        V + +L ++ + DHRV+DGAT AR     K L
Sbjct: 488 AILGVGKSQMKP-VWDGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQL 538

Length = 547

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  236 bits (603), Expect = 5e-69
 Identities = 120/450 (26%), Positives = 195/450 (43%), Gaps = 73/450 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           I+  + D+GE + E  I EW      G ++ E DV+ EVE+DKA++ + +   G + K+ 
Sbjct: 3   IEIKMPDLGETMTEGTIVEWL--KKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETL----- 562
             EGD   VG  +  IE E     A      +  AA   S   T  ++            
Sbjct: 61  VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVR 120

Query: 563 -HKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVK 621
                  ID  +++GTG  GR+ K+D+   +   +                         
Sbjct: 121 RLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAA---------------------- 158

Query: 622 GMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVI 681
               +              E +   +  ++K                            I
Sbjct: 159 ----AAPAPAAAAPASAAGEEERVPMSRIRK---------------------------AI 187

Query: 682 PIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFI 740
             R         M E+  TIP L L  EVD T+L  ++ ++   +++K  +KLT++ F +
Sbjct: 188 AER---------MVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLV 237

Query: 741 KALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITR 800
           KA+   + + P +NASID   E I+ +   NI IA+DT  GLVVP I+  +K  L +I +
Sbjct: 238 KAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAK 297

Query: 801 ELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF 860
           E+  +   + +GK+ P ++QGGT ++SN+G  G  +  PII P QV I+  G I+  P  
Sbjct: 298 EIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVV 357

Query: 861 DAEMRIVAKCILNVTWAADHRVVDGATVAR 890
                +V   ++ ++ + DHRV+DGA  AR
Sbjct: 358 VGGEIVVRP-MMYLSLSYDHRVIDGAEAAR 386

Length = 404

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  235 bits (603), Expect = 1e-68
 Identities = 137/473 (28%), Positives = 198/473 (41%), Gaps = 91/473 (19%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F + D+GEG+ E  I EW   V  G  + E   + EVE+DKA+V I S   GTV K+ 
Sbjct: 3   FEFKMPDLGEGMTEGEIVEWL--VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60

Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPN 567
             EGDV  VG  +  I         EE    +  AA   +                    
Sbjct: 61  VEEGDVVPVGSVIAVI---------EEEGEAEAAAAAEAAPEAPAPEPAPAAAA------ 105

Query: 568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSM 627
                                     + +     A  A    A+   S            
Sbjct: 106 -------------------------AAAAAPAAAAAPAAPAAAAAKAS------------ 128

Query: 628 TEANTIPS-LRLTEE--VDTTQLRDVK---------KEDIITYMNSPSDETNPAHTAHV- 674
                 P+  +L  E  VD   L  VK         KED+     + +     A  A   
Sbjct: 129 ------PAVRKLARELGVD---LSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAA 179

Query: 675 -----REASNVIPIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKNQVSALYQEK 728
                 E    +P+ G  K + K M E+   IP   LT+EVD T L  ++ Q+ A     
Sbjct: 180 PPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKA----- 234

Query: 729 FRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIK 788
             +KLT   F IKA++L + + P LNAS D   + I++    NI IA+ T  GL+VP I+
Sbjct: 235 IGVKLTVTDFLIKAVALALKKFPELNASWD--DDAIVLKKYVNIGIAVATDGGLIVPVIR 292

Query: 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCI 848
             +K  L ++ RE+  +   + EGK+ P ++QGGT ++SN+G  GG    PII P +V I
Sbjct: 293 DADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAI 352

Query: 849 VAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA-ATLWKSLEN 900
           +  G I   P       IV + ++ ++ + DHRV+DGA  AR    L + LEN
Sbjct: 353 LGVGAIVERPVVVDGE-IVVRKVMPLSLSFDHRVIDGADAARFLKALKELLEN 404

Length = 411

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  215 bits (550), Expect = 4e-64
 Identities = 82/212 (38%), Positives = 126/212 (59%), Gaps = 5/212 (2%)

Query: 694 MTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPI 752
           MTE+  TIP   LT+EVD T L  ++ ++    +++  LKLT++ F +KA++L + E P 
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKE-GLKLTFLDFLVKAVALALKEFPE 59

Query: 753 LNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG 812
           LNAS D   E I+     NI IA+ T  GL+VP I++ ++  LL+I +E+  +   + +G
Sbjct: 60  LNASWDGDAE-IVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDG 118

Query: 813 KVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCIL 872
           K+ P D+QGGT ++SN+G  G T   PII P QV I+  G I+  P    +  IV + ++
Sbjct: 119 KLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVV-VDGEIVIRKVM 177

Query: 873 NVTWAADHRVVDGATVARAATLWKS-LENILV 903
            ++ + DHRV+DGA  AR     K  LEN  +
Sbjct: 178 PLSLSFDHRVIDGAEAARFLNDLKELLENPEL 209

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  184 bits (470), Expect = 8e-51
 Identities = 74/143 (51%), Positives = 98/143 (68%)

Query: 901  ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGT 960
            I +   HNI +A+ T+HGLVVPNIK+V  LSLL+IT+EL R+Q  + E K+ P DI GGT
Sbjct: 270  IRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGT 329

Query: 961  ISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVV 1020
            I++SN+G +GG    P++   +V I+A G+IQ +PRF  +  V    I+ VT  ADHRV+
Sbjct: 330  ITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVL 389

Query: 1021 DGATVARAATLWKSLVENPALLL 1043
            DGATVAR    WKS VE P LL+
Sbjct: 390  DGATVARFCNEWKSYVEKPELLM 412

Length = 416

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  166 bits (423), Expect = 7e-47
 Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 28/197 (14%)

Query: 852  GKIQLLPRFDAEMRIVAKC-----ILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
             K+  L      ++ VA        LN +W  D                     I+    
Sbjct: 38   LKLTFLDFL---VKAVALALKEFPELNASWDGDAE-------------------IVYKKY 75

Query: 907  HNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNV 966
             NI IA+ T  GL+VP I++ ++ SLL+I +E+  +   + +GK+ P D+QGGT ++SN+
Sbjct: 76   VNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGKLKPEDLQGGTFTISNL 135

Query: 967  GNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
            G  G T   PII P QV I+  G I+  P       V+ K ++ ++ + DHRV+DGA  A
Sbjct: 136  GMFGVTFFTPIINPPQVAILGVGAIRKRPVVVDGEIVIRK-VMPLSLSFDHRVIDGAEAA 194

Query: 1027 RAATLWKSLVENPALLL 1043
            R     K L+ENP LLL
Sbjct: 195  RFLNDLKELLENPELLL 211

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  172 bits (438), Expect = 7e-45
 Identities = 119/474 (25%), Positives = 212/474 (44%), Gaps = 78/474 (16%)

Query: 451 NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 510
           N+ DIG    EV + E    V  G ++     +  VE DKAS+ + + + GTV+++    
Sbjct: 210 NVPDIGGD--EVEVTEVMVKV--GDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNV 265

Query: 511 GDVALVGKPLLDIEVEDEGVAAEEADSLD--------RKAAPGVSEVNTPDTSDQ---PN 559
           GD    G  ++  EVE    AA  A            +  AP  +     +   +    +
Sbjct: 266 GDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAEND 325

Query: 560 ETLHKDP--------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREAS 611
             +H  P          ++  +++GTG++GR+LKED+  Y+    D    A  A    A+
Sbjct: 326 AYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVK---DAVKRAEAAPAAAAA 382

Query: 612 NVISIRGYVKGMFKSMTEANTIPSLRLT--EEVDTTQLRDVKKEDIITYMNSPSDETNPA 669
                 G   G+          P +  +   E++  +L  ++K   I+  N         
Sbjct: 383 G-----GGGPGLL-------PWPKVDFSKFGEIEEVELGRIQK---ISGANL-------- 419

Query: 670 HTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSAL-YQEK 728
                         R +V            IP +   ++ D T+L   + Q +A   + K
Sbjct: 420 -------------HRNWVM-----------IPHVTQFDKADITELEAFRKQQNAEAEKRK 455

Query: 729 FRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIK 788
             +K+T + F +KA++  + + P  N+S+    + + +    NI IA+DT +GLVVP  K
Sbjct: 456 LGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFK 515

Query: 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCI 848
            VNK  +++++REL+ I   + +GK+   D+QGG  ++S++G +G T   PI+   +V I
Sbjct: 516 DVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAI 575

Query: 849 VAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
           +   K  + P ++ +     + +L ++ + DHRV+DGA  AR  T+    L +I
Sbjct: 576 LGVSKSAMEPVWNGK-EFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDI 628

Length = 633

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  165 bits (421), Expect = 4e-43
 Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 1/145 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            + +      NI  A+DT +GLVVP IK V+K SLL+I RE+  +   + +GK+ P D+QG
Sbjct: 403  DELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQG 462

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
            G  ++S++G +GGT   PII   +V I+  GK Q+ P        V + +L ++ + DHR
Sbjct: 463  GCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKP-VWDGKEFVPRLMLPLSLSYDHR 521

Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
            V+DGAT AR     K L+ +P  +L
Sbjct: 522  VIDGATAARFTNYLKQLLADPRRML 546

Length = 547

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  160 bits (407), Expect = 1e-41
 Identities = 113/481 (23%), Positives = 210/481 (43%), Gaps = 81/481 (16%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           + +  + DIG  I +V + E    V  G  ++    +  +ESDKAS+ + +   G V+ V
Sbjct: 116 VQEVTVPDIG-DIEKVTVIEVL--VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172

Query: 507 YYGEGDVALVGKPLLDIEVEDEGVAAEE-------------ADSLDRKAAPGVSEVNTPD 553
               GD    G  +L + V     A                A   +  AAP  ++   P 
Sbjct: 173 KVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPA 232

Query: 554 TSDQPNETLHKDPNK------------IDTKELRGTGKQGRVLKEDIITYMNSPSDETNP 601
                 +   K  +             +D   ++GTG +GR+L+ED+  ++  PS     
Sbjct: 233 PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQA 292

Query: 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNS 661
           A                       + + A   P       VD ++  +V++ D+      
Sbjct: 293 A-----------------------AASAAGGAPGALPWPNVDFSKFGEVEEVDM------ 323

Query: 662 PSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQV 721
                     + +R+ S           + ++ T    IP +   ++ D T++   + Q 
Sbjct: 324 ----------SRIRKIS--------GANLTRNWT---MIPHVTHFDKADITEMEAFRKQQ 362

Query: 722 SALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHG 781
           +A   EK  +KLT +   +KA++  + + P  NAS+D   E +++    NI +A+DT +G
Sbjct: 363 NAA-VEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNG 421

Query: 782 LVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
           L+VP IK V++  + ++  EL  +   + +GK+ P ++QG   ++S++G +GGT   PI+
Sbjct: 422 LLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIV 481

Query: 842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAAT-LWKSLEN 900
              +V I+   K  + P ++ +     + +L ++ + DHRV+DGA  AR  T + +SL +
Sbjct: 482 NAPEVAILGVSKSGMEPVWNGK-EFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLAD 540

Query: 901 I 901
           I
Sbjct: 541 I 541

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  142 bits (360), Expect = 2e-37
 Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 57/341 (16%)

Query: 568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSM 627
            ID   L+G+G+ G++L ED+  ++ S      PA                         
Sbjct: 16  GIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPA------------------------- 50

Query: 628 TEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYV 687
            EA ++ S +   +                   + +    P      RE   V PIR   
Sbjct: 51  -EAASVSSAQQAAK-------------------TAAPAAAPPKLEGKREK--VAPIR--- 85

Query: 688 KGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLC 746
           K + ++MT + + +  + L  E+D T+L D++  V     +   +KLT++PF  KA+ + 
Sbjct: 86  KAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIA 145

Query: 747 MTEHPILNASIDPTQENILVNPDH-NISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRI 805
           + E PI  A  D      LV PD  N+ IA+DT+ GL+VP IK+  KL +++I +E+ R+
Sbjct: 146 LKEFPIFAAKYDEATSE-LVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRL 204

Query: 806 QGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMR 865
              + E K+ P +++GG+ +++N G+VG     P+I   ++ I   G I          +
Sbjct: 205 AKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVK-NGQ 263

Query: 866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
           IVA  ++++T AADHR +DGAT+ R A+  K L   L  P+
Sbjct: 264 IVAGKVMHLTVAADHRWIDGATIGRFASRVKEL---LEKPE 301

Length = 306

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  143 bits (363), Expect = 1e-36
 Identities = 73/251 (29%), Positives = 99/251 (39%), Gaps = 65/251 (25%)

Query: 190 FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 249
             LA  GEGI E  +  W   V EG ++ EF  +CEV+SDKA++ ITSRYKG V ++ + 
Sbjct: 1   VPLAQTGEGIAECELLRWF--VKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFS 58

Query: 250 EGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKV 309
            GD+  VG+ LL I VED           D    P  S             +        
Sbjct: 59  PGDIVKVGETLLKIMVEDSQHLRS-----DSLLLPTDSSNIVSLAESDERGSNLSG---- 109

Query: 310 NREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGT 369
                                               +L+TP+VR + K Y ID  ++ GT
Sbjct: 110 ------------------------------------VLSTPAVRHLAKQYGIDLNDILGT 133

Query: 370 GKQGRVLKEDIITYM---------------NSPIDETNLAHTAHVREASN---VISIRGY 411
           GK GRVLKED++ Y                     E      +   E S     I +RG+
Sbjct: 134 GKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGF 193

Query: 412 VKGMFKSMTEA 422
            + M K+MT A
Sbjct: 194 QRAMVKTMTAA 204

Length = 416

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  141 bits (358), Expect = 3e-36
 Identities = 108/466 (23%), Positives = 198/466 (42%), Gaps = 78/466 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           I+  + ++ E I E  + EW+  V  G  +   + + E+E+DK  + + S   G ++++ 
Sbjct: 1   IEIKVPELAESITEGTVAEWHKKV--GDTVKRDENIVEIETDKVVLEVPSPADGVLQEIL 58

Query: 508 YGEGDVALVGKPLLDIEVED-------EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNE 560
           + EGD    G+ L  +E  +            E+ ++    AA   +      +   P  
Sbjct: 59  FKEGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSL-SPAA 117

Query: 561 TLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYV 620
                 + ID   + GTG  GRV KEDII    +P+    PA  A  +  +N        
Sbjct: 118 RRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANF------- 170

Query: 621 KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNV 680
                           R  E V  T+LR                                
Sbjct: 171 ---------------TRPEERVKMTRLR-------------------------------- 183

Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
                  + + + + EA N+   L    EVD + + +++ +    +++K  +KL +M FF
Sbjct: 184 -------QRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFF 236

Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
           +KA+   +   P +NA ID     I+    ++IS+A+ T  GLVVP +++ +++   DI 
Sbjct: 237 VKAVVAALKRFPEVNAEIDGDD--IVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIE 294

Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
           +E+  +   + +GK+   D+ GGT +++N G  G  +  PII P Q  I+    I+  P 
Sbjct: 295 KEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPV 354

Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
                +I  + ++ +  + DHR++DG     A T   +++ +L +P
Sbjct: 355 AVNG-QIEIRPMMYLALSYDHRLIDG---KEAVTFLVTIKELLEDP 396

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  139 bits (353), Expect = 2e-35
 Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            + I++    NI IA+ T  GL+VP I+  +K SL ++ RE+  +   + EGK+ P ++QG
Sbjct: 266  DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQG 325

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
            GT ++SN+G  GG    PII P +V I+  G I   P       VV K ++ ++ + DHR
Sbjct: 326  GTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRK-VMPLSLSFDHR 384

Query: 1019 VVDGATVARAATLWKSLVENPALLLT 1044
            V+DGA  AR     K L+ENPALLL 
Sbjct: 385  VIDGADAARFLKALKELLENPALLLL 410

Length = 411

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  133 bits (336), Expect = 5e-33
 Identities = 113/487 (23%), Positives = 188/487 (38%), Gaps = 106/487 (21%)

Query: 459 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALV 516
           +   N+ +W     EG ++N  DV+ E+E+DKA++   +  +G + K+   EG  DV  V
Sbjct: 11  MTTGNLAKWL--KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVP-V 67

Query: 517 GKPLL-------DIEVEDEGVAAEEADSLDRK----------AAPGVSEVNTPDTSDQ-- 557
            KP+        D+    +    E + S   K          +AP  S      + +   
Sbjct: 68  NKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSS 127

Query: 558 PNETLHKDPNK----------------IDTKELRGTGKQGRVLKEDIITYMNSPSDETNP 601
           P     K+                   ID   + G+G  GR++K+DI ++          
Sbjct: 128 PAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESF---VPQSPAS 184

Query: 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNS 661
           A+                      +               V T    DV           
Sbjct: 185 ANQQ----------------AAATTPATYPAAA------PVSTGSYEDV----------- 211

Query: 662 PSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQ 720
                               P+    K + K + E+  TIP   ++ E +  +L  ++ +
Sbjct: 212 --------------------PLSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKE 251

Query: 721 VSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKH 780
           ++A+  E    KL+   F IKA +L + E P  N+S       I    + +IS+A+ T  
Sbjct: 252 LNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDN--FIRRYKNVDISVAVATPD 307

Query: 781 GLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPI 840
           GL+ P +++ +   L  I+ E+  +   +   K+ P + QGGT ++SN+G  G      I
Sbjct: 308 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAI 367

Query: 841 IVPGQVCIVAFG--KIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
           I P Q CI+A G  +   +   D E       I++VT + DHRV+DGA     A   KS 
Sbjct: 368 INPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAV---GAEFLKSF 424

Query: 899 ENILVNP 905
           +  L NP
Sbjct: 425 KKYLENP 431

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  131 bits (330), Expect = 1e-31
 Identities = 107/493 (21%), Positives = 186/493 (37%), Gaps = 99/493 (20%)

Query: 452 LADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG 511
           + ++GE + E  +  W   V +   ++E   + EV +DK    I S   GT+ ++   E 
Sbjct: 131 MPELGESVTEGTVTSWLKAVGDTVEVDE--PLLEVSTDKVDTEIPSPVAGTLLEIRAPED 188

Query: 512 DVALVGKPLLDIEVEDEGVAAEEA--DSLDRKAAPGVSEVNTPDTSDQPNETLHKDP--- 566
           D   VG  L  I   D   A  E   +     +  G      PD + +        P   
Sbjct: 189 DTVEVGTVLAIIG--DANAAPAEPAEEEAPAPSEAGSEP--APDPAARAPHAAPDPPAPA 244

Query: 567 ----------------------------------NKIDTKELRGTGKQGRVLKEDIITYM 592
                                               +D   ++GTG  GR+ K+D++   
Sbjct: 245 PAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLA-- 302

Query: 593 NSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKK 652
            +          A    A+                       +     E DT +LR   +
Sbjct: 303 -AAKAAEEARAAAAAPAAA----------------AAPAAPAAAAKPAEPDTAKLRGTTQ 345

Query: 653 EDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDT 711
           +     MN             +R+ +                 E+  T   L    EVD 
Sbjct: 346 K-----MN------------RIRQITA------------DKTIESLQTSAQLTQVHEVDM 376

Query: 712 TQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHN 771
           T++  ++ +    + EK  + LT++PFF++A++  +  HP +NAS +   + +  +   +
Sbjct: 377 TRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAETKEVTYHDVEH 436

Query: 772 ISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGN 831
           + IA+DT  GL+VP I +   L L  + + +  +   + + K+ P ++ GGT +++N+G+
Sbjct: 437 VGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSGGTFTITNIGS 496

Query: 832 VGGTLVQPIIVPGQVCIVAFGKIQLLPRF----DAEMRIVAKCILNVTWAADHRVVDGAT 887
            G     PI+ P Q  I+  G I   PR     D    I  + +  +    DHR+VDGA 
Sbjct: 497 GGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYLPLTYDHRLVDGAD 556

Query: 888 VAR-AATLWKSLE 899
             R   T+ K LE
Sbjct: 557 AGRFLTTIKKRLE 569

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  126 bits (320), Expect = 4e-31
 Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 42/242 (17%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
            +FK+ D+GEG+ E  I EW   V  G  + E   + EVE+DKA+V I S   GTV K+ 
Sbjct: 3   FEFKMPDLGEGMTEGEIVEWL--VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
             EGDV  VG  +  IE E E  AA  A++     AP  +       +  P         
Sbjct: 61  VEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAP 120

Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
                                                   A+P+VR++ +   +D   ++
Sbjct: 121 AA----------------------------------AAAKASPAVRKLARELGVDLSTVK 146

Query: 368 GTGKQGRVLKEDIITYMNSPIDETNLAHTAHV------REASNVISIRGYVKGMFKSMTE 421
           G+G  GR+ KED+     +       A  A         E    + + G  K + K M E
Sbjct: 147 GSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVE 206

Query: 422 AH 423
           + 
Sbjct: 207 SK 208

Length = 411

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  125 bits (316), Expect = 1e-30
 Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 1/148 (0%)

Query: 897  SLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDI 956
              E I+ +   NI IA+DT  GLVVP I+  +K SL +I +E+  +   + +GK+ P ++
Sbjct: 257  DGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEM 316

Query: 957  QGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAAD 1016
            QGGT ++SN+G  G  +  PII P QV I+  G I+  P       VV   ++ ++ + D
Sbjct: 317  QGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRP-MMYLSLSYD 375

Query: 1017 HRVVDGATVARAATLWKSLVENPALLLT 1044
            HRV+DGA  AR     K L+E+P  LL 
Sbjct: 376  HRVIDGAEAARFLVALKELLEDPERLLL 403

Length = 404

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  112 bits (282), Expect = 1e-25
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 35/196 (17%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           ++ K+ DIGE I EV + EW   V  G  + E   +  VE+DKA++ I S   G V+++ 
Sbjct: 120 VEVKVPDIGE-ITEVEVIEWL--VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
              GD   VG  L+ IEV     AA  A +    AAP  +    P  +            
Sbjct: 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPA---AAAPAAAAAAAPAPAPAA--------- 224

Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
                  A         +      H               A+P+VRR+ +   +D  +++
Sbjct: 225 -----AAAPAAAAPAAAAAPGKAPH---------------ASPAVRRLARELGVDLSQVK 264

Query: 368 GTGKQGRVLKEDIITY 383
           GTGK+GR+ KED+  +
Sbjct: 265 GTGKKGRITKEDVQAF 280

Length = 547

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  108 bits (271), Expect = 8e-25
 Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 12/211 (5%)

Query: 698 NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASI 757
           NT   L    E D + L +++ +    +Q+K  +KL +M  F+KA ++ + + PI+NA I
Sbjct: 210 NTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYI 269

Query: 758 DPTQENILVNPDH-NISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLP 816
           D    + +V  ++ +IS+A+ T  GLVVP I++       +I +EL  +   +   K+  
Sbjct: 270 D---GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTL 326

Query: 817 RDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP--RFDAEMRIVAKCILNV 874
            D+ GGT ++SN G  G  +  PII P Q  I+    I+  P    +    IV + I+ +
Sbjct: 327 EDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN---EIVIRPIMYL 383

Query: 875 TWAADHRVVDGATVARAATLWKSLENILVNP 905
               DHR++DG     A T  K +++++ +P
Sbjct: 384 ALTYDHRLIDG---RDAVTFLKKIKDLIEDP 411

Length = 418

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  105 bits (263), Expect = 1e-24
 Identities = 54/142 (38%), Positives = 89/142 (62%), Gaps = 2/142 (1%)

Query: 902  LVNPDH-NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGT 960
            LV PD  N+ IA+DT+ GL+VP IK+  KLS+++I +E+ R+   + E K+ P +++GG+
Sbjct: 163  LVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGS 222

Query: 961  ISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVV 1020
             +++N G+VG     P+I   ++ I   G I          ++VA  ++++T AADHR +
Sbjct: 223  FTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAADHRWI 281

Query: 1021 DGATVARAATLWKSLVENPALL 1042
            DGAT+ R A+  K L+E P +L
Sbjct: 282  DGATIGRFASRVKELLEKPEIL 303

Length = 306

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  109 bits (273), Expect = 1e-24
 Identities = 114/469 (24%), Positives = 189/469 (40%), Gaps = 119/469 (25%)

Query: 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 520
           E NI  W     EG +++  +V+CEVE+DKA+V +    +G + K+  G+G   +    +
Sbjct: 126 EGNIARWLKK--EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEV 183

Query: 521 LDIEVEDEG-------------VAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDP- 566
           + I VE+E               A     +      P   EV  P +S +P  +    P 
Sbjct: 184 IAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPP 243

Query: 567 ------------------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVR 608
                             N +    ++GTG  GR++K DI  Y+ S              
Sbjct: 244 SSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLAS-------------- 289

Query: 609 EASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNP 668
                       KG     +  +  P+L  T+ +  TQ+R V                  
Sbjct: 290 ----------GGKGATAPPSTDSKAPALDYTD-IPNTQIRKV------------------ 320

Query: 669 AHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEK 728
             TA                   + +    TIP   LT +    +L  +++Q+++L +  
Sbjct: 321 --TAS------------------RLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEAS 360

Query: 729 FRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIK 788
              K++     IKA +L + + P  N+S   T + I    + NI++A+ T++GL VP +K
Sbjct: 361 GGKKISVNDLVIKAAALALRKVPQCNSSW--TDDYIRQYHNVNINVAVQTENGLYVPVVK 418

Query: 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQ--PIIVPGQV 846
             +K  L  I  E+ ++   + E  + P D +GGT ++SN+G   G + Q   II P Q 
Sbjct: 419 DADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFG-IKQFCAIINPPQS 477

Query: 847 CIVAFGKIQLLPRFDAEMRIV---------AKCILNVTWAADHRVVDGA 886
            I+A G         AE R++             ++VT + DHRV+DGA
Sbjct: 478 AILAVGS--------AEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGA 518

Length = 539

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  103 bits (259), Expect = 2e-23
 Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 53/241 (21%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           I+ K+ D+GE + E  I EW      G ++ E DV+ EVE+DKA++ + +   G + K+ 
Sbjct: 3   IEIKMPDLGETMTEGTIVEWL--KKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
             EGD   VG  +  IE E     A      +  AA   S   T  ++            
Sbjct: 61  VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGR-------- 112

Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
                                                 +LA+P+VRR+ +   ID  +++
Sbjct: 113 --------------------------------------VLASPAVRRLAREAGIDLSKVK 134

Query: 368 GTGKQGRVLKEDIITY-----MNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEA 422
           GTG  GR+ K+D+          +       A  A        + +    K + + M E+
Sbjct: 135 GTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVES 194

Query: 423 H 423
            
Sbjct: 195 K 195

Length = 404

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  104 bits (262), Expect = 5e-23
 Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 1/131 (0%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            NI IA+DT +GLVVP  K VNK  +++++REL+ I   + +GK+   D+QGG  ++S++G
Sbjct: 498  NIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIG 557

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
             +G T   PI+   +V I+   K  + P ++ +     + +L ++ + DHRV+DGA  AR
Sbjct: 558  GLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGK-EFAPRLMLPLSLSYDHRVIDGADGAR 616

Query: 1028 AATLWKSLVEN 1038
              T+    + +
Sbjct: 617  FITIINDRLSD 627

Length = 633

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 96.8 bits (242), Expect = 4e-21
 Identities = 104/456 (22%), Positives = 182/456 (39%), Gaps = 105/456 (23%)

Query: 454 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 513
            + E + E  I  W+     G  +   +V+ E+E+DK  + + +   G + ++   EGD 
Sbjct: 9   TLPESVTEATIATWH--KKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT 66

Query: 514 ALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKE 573
             VG+ L  I+      AA  A      AA   +    P  +                  
Sbjct: 67  VTVGQVLGRIDEGAAAGAAAAA------AAAAAAAAAAPAQAQAA--------------- 105

Query: 574 LRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTI 633
                               + ++++N A +   R                K   E    
Sbjct: 106 --------------------AAAEQSNDALSPAAR----------------KLAAENGLD 129

Query: 634 PSLRLTEEVDTTQLRD-VKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRG--YVKGM 690
            S      V  T     V KED++  + + +        A    A   +  R    V   
Sbjct: 130 AS-----AVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVP-- 182

Query: 691 FKSMTEA-NTIPSLRLTE------------EVDTTQLRDVKNQVSALYQEKFR----LKL 733
              MT    TI + RL E            EVD T + D++ Q    Y++ F     +KL
Sbjct: 183 ---MTRLRKTI-AERLLEAQNTTAMLTTFNEVDMTPVMDLRKQ----YKDAFEKKHGVKL 234

Query: 734 TYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKL 793
            +M FF+KA+   +  +P +NASID    +I+ +  ++I IA+ T  GLVVP ++  ++L
Sbjct: 235 GFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVPVLRDADQL 292

Query: 794 CLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGK 853
              +I +++  +   + +GK+   ++ GGT +++N G  G  +  PII P Q  I+   K
Sbjct: 293 SFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHK 352

Query: 854 IQLLPRFDAEM----RIVAKCILNVTWAADHRVVDG 885
           I+  P     +    +IV + ++ +  + DHR++DG
Sbjct: 353 IKERP-----VAVNGQIVIRPMMYLALSYDHRIIDG 383

Length = 407

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 86.7 bits (216), Expect = 1e-20
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
            + K+ D+GE + E  I EW   V EG  + E DV+ EVE+DKA+V + +   G + K+ 
Sbjct: 1   TEIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKIL 58

Query: 248 YGEGDVALVGKPLLDI 263
             EGD   VG+ +  I
Sbjct: 59  VEEGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 96.5 bits (240), Expect = 2e-20
 Identities = 43/136 (31%), Positives = 78/136 (57%), Gaps = 1/136 (0%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            NI +A+DT +GL+VP IK V++  + ++  EL  +   + +GK+ P ++QG   ++S++G
Sbjct: 411  NIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLG 470

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
             +GGT   PI+   +V I+   K  + P ++ +     + +L ++ + DHRV+DGA  AR
Sbjct: 471  GIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-EFEPRLMLPLSLSYDHRVIDGADAAR 529

Query: 1028 AATLWKSLVENPALLL 1043
              T     + +   LL
Sbjct: 530  FTTYICESLADIRRLL 545

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 84.8 bits (211), Expect = 4e-20
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +  + D+GE + E  I EW   V EG  + E DV+ EVE+DKA+V + +   G + K+ 
Sbjct: 1   TEIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKIL 58

Query: 508 YGEGDVALVGKPLLDI 523
             EGD   VG+ +  I
Sbjct: 59  VEEGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 91.5 bits (227), Expect = 1e-19
 Identities = 83/352 (23%), Positives = 153/352 (43%), Gaps = 45/352 (12%)

Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMT 628
           I+  ++ G+G  GRV KED+ TY                 + +NV+ I      + K + 
Sbjct: 21  INLYDVSGSGANGRVHKEDVETY-----------------KDTNVVRI----SPLAKRIA 59

Query: 629 EANTIPSLRLTEEVDTTQLR-DVKKEDIITYMNSPSDETNPAHTAHVREASNV------- 680
             + I      +E+  T  R  + K+D++  +    +  +    A + +   V       
Sbjct: 60  LEHNIA----WQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPY 115

Query: 681 -----IPIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLT 734
                IP+    K + + M E+  T P+  L  EVD T++  ++ +V     E    K T
Sbjct: 116 GEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTT 175

Query: 735 YMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLC 794
                  A+   + +HP +NAS+    + I+ +   N+++A+   +GL+ P + +  K+ 
Sbjct: 176 VTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMS 235

Query: 795 LLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII-VPGQVCIVAFGK 853
           L ++      + G + +GK+ P ++Q  T ++SN+G  G     PII  P    +     
Sbjct: 236 LSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSST 295

Query: 854 IQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
           I+     + E  IV + I+++    DHRVVDG      A   K L+ ++  P
Sbjct: 296 IEKPVVVNGE--IVIRPIMSLGLTIDHRVVDGMA---GAKFMKDLKELIETP 342

Length = 347

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 90.6 bits (225), Expect = 5e-19
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +IS+A+ T  GL+ P +++ +   L  I+ E+  +   +   K+ P + QGGT ++SN+G
Sbjct: 298  DISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLG 357

Query: 968  NVGGTLVQPIIVPRQVCIVAFG--KIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATV 1025
              G      II P Q CI+A G  +   +   D E       I++VT + DHRV+DGA  
Sbjct: 358  MFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVG 417

Query: 1026 ARAATLWKSLVENPALLL 1043
            A     +K  +ENP  +L
Sbjct: 418  AEFLKSFKKYLENPIEML 435

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 89.4 bits (221), Expect = 2e-18
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 3/188 (1%)

Query: 698 NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASI 757
           NT   L    EVD T L  +++Q    + EK  +KL  M  FIKA    +   P++NA I
Sbjct: 255 NTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVI 314

Query: 758 DPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPR 817
           D   ++I+     +ISIA+ T  GLVVP I+  +K+   +I + +  +   ++EG +   
Sbjct: 315 D--GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISID 372

Query: 818 DIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWA 877
           ++ GG+ ++SN G  G  +  PII P Q  I+    I   P       +V + ++ V   
Sbjct: 373 EMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMV-VGGSVVPRPMMYVALT 431

Query: 878 ADHRVVDG 885
            DHR++DG
Sbjct: 432 YDHRLIDG 439

Length = 463

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 85.6 bits (213), Expect = 4e-17
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           I+FK+ DIGE + EV + EW   V EG  + E   +  VE+DKA++ I S   G V+++ 
Sbjct: 3   IEFKVPDIGE-VVEVEVIEWL--VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIK 59

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNET 301
              GD   VG  L  IE      AA    +    AA   +       +      
Sbjct: 60  VKVGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAA 113

Length = 547

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 82.9 bits (206), Expect = 3e-16
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           I+F + DIGE + EV + EW   V EG  + E   +  VE+DKA++ I S   G V+++ 
Sbjct: 3   IEFKVPDIGE-VVEVEVIEWL--VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIK 59

Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNET 561
              GD   VG  L  IE      AA    +    AA   +       +      
Sbjct: 60  VKVGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAA 113

Length = 547

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 80.8 bits (199), Expect = 2e-15
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            ++ IA+DT  GL+VP I +   LSL  + + +  +   + + K+ P ++ GGT +++N+G
Sbjct: 436  HVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSGGTFTITNIG 495

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRF--DAE----MRVVAKCILNVTWAADHRVVD 1021
            + G     PI+ P Q  I+  G I   PR   D +    + + + C L +T+  DHR+VD
Sbjct: 496  SGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYLPLTY--DHRLVD 553

Query: 1022 GATVARAATLWKSLVE 1037
            GA   R  T  K  +E
Sbjct: 554  GADAGRFLTTIKKRLE 569

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 79.3 bits (196), Expect = 2e-15
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +IS+A+ T  GLVVP I++    S  +I +EL  +   +   K+   D+ GGT ++SN G
Sbjct: 281  DISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGG 340

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLP--RFDAEMRVVAKCILNVTWAADHRVVDGATV 1025
              G  +  PII P Q  I+    I+  P    +    +V + I+ +    DHR++DG   
Sbjct: 341  VFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN---EIVIRPIMYLALTYDHRLIDG--- 394

Query: 1026 ARAATLW----KSLVENPALLL 1043
             R A  +    K L+E+PA +L
Sbjct: 395  -RDAVTFLKKIKDLIEDPARML 415

Length = 418

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 79.1 bits (195), Expect = 4e-15
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 20/147 (13%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            NI++A+ T++GL VP +K  +K  L  I  E+ ++   + E  + P D +GGT ++SN+G
Sbjct: 401  NINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLG 460

Query: 968  NVGGTLVQ--PIIVPRQVCIVAFGKIQLLPRFDAEMRVV---------AKCILNVTWAAD 1016
               G + Q   II P Q  I+A G         AE RV+             ++VT + D
Sbjct: 461  GPFG-IKQFCAIINPPQSAILAVGS--------AEKRVIPGSGPDQYNFASFMSVTLSCD 511

Query: 1017 HRVVDGATVARAATLWKSLVENPALLL 1043
            HRV+DGA  A     +K  +ENP  +L
Sbjct: 512  HRVIDGAIGAEWLKAFKGYIENPESML 538

Length = 539

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 68.0 bits (167), Expect = 3e-14
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
            + K   IGE ++E    EW   V  G ++    V+CEVE+ K  + I +   G V+++ 
Sbjct: 1   TEIKSPMIGESVKEGTA-EWL--VKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEIL 57

Query: 248 YGEGDVALVGKPLLDI 263
             EGD   VG PL  I
Sbjct: 58  VKEGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +     IGE ++E    EW   V  G ++    V+CEVE+ K  + I +   G V+++ 
Sbjct: 1   TEIKSPMIGESVKEGTA-EWL--VKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEIL 57

Query: 508 YGEGDVALVGKPLLDI 523
             EGD   VG PL  I
Sbjct: 58  VKEGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 72.8 bits (179), Expect = 3e-13
 Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 1/136 (0%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +IS+A+ T  GLVVP +++ +++S  DI +E+  +   + +GK+   D+ GGT +++N G
Sbjct: 266  DISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGG 325

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
              G  +  PII P Q  I+    I+  P      ++  + ++ +  + DHR++DG     
Sbjct: 326  VFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-QIEIRPMMYLALSYDHRLIDGKEAVT 384

Query: 1028 AATLWKSLVENPALLL 1043
                 K L+E+P  LL
Sbjct: 385  FLVTIKELLEDPRRLL 400

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 72.9 bits (179), Expect = 3e-13
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 22/187 (11%)

Query: 199 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALV 256
           +   N+ +W     EG ++N  DV+ E+E+DKA++   +  +G + K+   EG  DV  V
Sbjct: 11  MTTGNLAKWL--KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVP-V 67

Query: 257 GKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAH 316
            KP+  + VE++     +A   + K     S    P                        
Sbjct: 68  NKPIA-VLVEEKE-DVADAFK-NYKLESSASPAPKPSEIAPTAP--------------PS 110

Query: 317 KPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVL 376
            P  +P   + S       P++  ++  +I A+P  +++ K   ID   + G+G  GR++
Sbjct: 111 APKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIV 170

Query: 377 KEDIITY 383
           K+DI ++
Sbjct: 171 KKDIESF 177

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 32/206 (15%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           + +  + DIG  I +V + E    V  G  ++    +  +ESDKAS+ + +   G V+ V
Sbjct: 116 VQEVTVPDIG-DIEKVTVIEVL--VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172

Query: 247 YYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEP 306
               GD    G  +L + V     A   A +  + AA           + QP      EP
Sbjct: 173 KVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQS-------PAATQP------EP 219

Query: 307 NKVNREPIAHKPDVTPDLSRDSA-VSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKE 365
                   A  P      +++ A V H               A P+VRR+ + + +D   
Sbjct: 220 AAAPAAAKAQAPAPQQAGTQNPAKVDH---------------AAPAVRRLAREFGVDLSA 264

Query: 366 LRGTGKQGRVLKEDIITYMNSPIDET 391
           ++GTG +GR+L+ED+  ++  P    
Sbjct: 265 VKGTGIKGRILREDVQRFVKEPSVRA 290

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 68.9 bits (169), Expect = 4e-12
 Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 16/186 (8%)

Query: 139 TNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEG 198
            NK L  +    + R+FS              P    H   +       +  K+  +G+ 
Sbjct: 9   LNKPL-LSSVKGMFRRFSLRKL---------QPACSAHFSKSY--FSIKV-IKVPTMGDS 55

Query: 199 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGK 258
           I E  + EW   V  G  + E +V+C +E+DK SV I +   G + K++  EGD   VG 
Sbjct: 56  ISEGTVVEWKKKV--GDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGA 113

Query: 259 PLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKP 318
           PL +I+       A    +     A   +       +  P      +P            
Sbjct: 114 PLSEID-TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA 172

Query: 319 DVTPDL 324
                 
Sbjct: 173 PAAKPP 178

Length = 418

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 68.1 bits (167), Expect = 1e-11
 Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 37/192 (19%)

Query: 194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 253
           DIG    EV + E    V  G ++     +  VE DKAS+ + + + GTV+++    GD 
Sbjct: 213 DIGGD--EVEVTEVMVKV--GDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 268

Query: 254 ALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREP 313
              G  ++  EVE  G A   A +    AAP  +       +  P               
Sbjct: 269 VKTGSLIMRFEVE--GAAPAAAPAKQEAAAPAPAAAKAEAPAAAP--------------- 311

Query: 314 IAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQG 373
            A K +   + + + A  H               ATP VRR+ + + ++  +++GTG++G
Sbjct: 312 -AAKAEGKSEFAENDAYVH---------------ATPLVRRLAREFGVNLAKVKGTGRKG 355

Query: 374 RVLKEDIITYMN 385
           R+LKED+  Y+ 
Sbjct: 356 RILKEDVQAYVK 367

Length = 633

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 67.8 bits (166), Expect = 1e-11
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 430 PPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESD 489
            P    H   +       +   +  +G+ I E  + EW   V  G  + E +V+C +E+D
Sbjct: 30  QPACSAHFSKSY--FSIKV-IKVPTMGDSISEGTVVEWKKKV--GDYVKEDEVICIIETD 84

Query: 490 KASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEV 549
           K SV I +   G + K++  EGD   VG PL +I+       A    +     A   +  
Sbjct: 85  KVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID-TGGAPPAAAPAAAAAAKAEKTTPE 143

Query: 550 NTPDTSDQPNETLHKDP 566
                +  P       P
Sbjct: 144 KPKAAAPTPEPPAASKP 160

Length = 418

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 68.0 bits (166), Expect = 2e-11
 Identities = 74/328 (22%), Positives = 124/328 (37%), Gaps = 68/328 (20%)

Query: 73  LDTILGEFKADVVGWYS------FTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRI 126
           +  +L    A +V ++S        +  D+++      L                   ++
Sbjct: 16  VSNLLRREHAALVRYFSNSTRSSLGKGDDIAKRRGYPPLERRSQP-------------KV 62

Query: 127 STNVVFEENF--TYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLST--PPLQCHHHLHTSC 182
           S+  +F  N   T        TGS       SS +Q   G   S+  PP Q         
Sbjct: 63  SSLGLFGSNISRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQ--------- 113

Query: 183 IRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGT 242
                 +  +  +   + E NI  W     EG +++  +V+CEVE+DKA+V +    +G 
Sbjct: 114 ------EIGMPSLSPTMTEGNIARWLKK--EGDKVSPGEVLCEVETDKATVEMECMEEGY 165

Query: 243 VRKVYYGEGDVALVGKPLLDIEVEDEGVAAE----EADSLDRKAAPGVSEVNTPDTSDQP 298
           + K+  G+G   +    ++ I VE+E    +    +  S    AAP       P     P
Sbjct: 166 LAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPP-----P 220

Query: 299 NETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKH 358
            E   ++P     EP A KP   P  S D                 +I A+P  R++ + 
Sbjct: 221 KEEEVEKPASSP-EPKASKPSAPP-SSGD-----------------RIFASPLARKLAED 261

Query: 359 YEIDTKELRGTGKQGRVLKEDIITYMNS 386
             +    ++GTG  GR++K DI  Y+ S
Sbjct: 262 NNVPLSSIKGTGPDGRIVKADIEDYLAS 289

Length = 539

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 66.7 bits (162), Expect = 3e-11
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 1/136 (0%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +ISIA+ T  GLVVP I+  +K++  +I + +  +   ++EG +   ++ GG+ ++SN G
Sbjct: 326  DISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGG 385

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
              G  +  PII P Q  I+    I   P       VV + ++ V    DHR++DG     
Sbjct: 386  VYGSLISTPIINPPQSAILGMHSIVSRPMV-VGGSVVPRPMMYVALTYDHRLIDGREAVY 444

Query: 1028 AATLWKSLVENPALLL 1043
                 K +VE+P  LL
Sbjct: 445  FLRRVKDVVEDPQRLL 460

Length = 463

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 66.0 bits (162), Expect = 4e-11
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 19/145 (13%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +I IA+ T  GLVVP ++  ++LS  +I +++  +   + +GK+   ++ GGT +++N G
Sbjct: 270  DIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGG 329

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILN-----VTWAADHRVVDG 1022
              G  +  PII P Q  I+   KI+  P     +  V   I+      +  + DHR++DG
Sbjct: 330  VFGSLMSTPIINPPQSAILGMHKIKERP-----V-AVNGQIVIRPMMYLALSYDHRIIDG 383

Query: 1023 ATVARAATLW----KSLVENPALLL 1043
                + A  +    K L+E+P  LL
Sbjct: 384  ----KEAVGFLVTIKELLEDPERLL 404

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 65.1 bits (159), Expect = 8e-11
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 48/200 (24%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           I+ K+ ++ E I E  + EW+  V  G  +   + + E+E+DK  + + S   G ++++ 
Sbjct: 1   IEIKVPELAESITEGTVAEWHKKV--GDTVKRDENIVEIETDKVVLEVPSPADGVLQEIL 58

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
           + EGD    G+ L         +  E  D              T     +  E   KE  
Sbjct: 59  FKEGDTVESGQVL--------AILEEGND-------------ATAAPPAKSGEE--KEET 95

Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
                  A                        N+       +P+ RR+ K + ID   + 
Sbjct: 96  PAASAAAA-------------------PTAAANRPS----LSPAARRLAKEHGIDLSAVP 132

Query: 368 GTGKQGRVLKEDIITYMNSP 387
           GTG  GRV KEDII    +P
Sbjct: 133 GTGVTGRVTKEDIIKKTEAP 152

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            N+++A+   +GL+ P + +  K+SL ++      + G + +GK+ P ++Q  T ++SN+G
Sbjct: 212  NLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLG 271

Query: 968  NVGGTLVQPII-VPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
              G     PII  P    +     I+     + E+ +  + I+++    DHRVVDG   A
Sbjct: 272  MFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVI--RPIMSLGLTIDHRVVDGMAGA 329

Query: 1027 RAATLWKSLVENPALLL 1043
            +     K L+E P  +L
Sbjct: 330  KFMKDLKELIETPISML 346

Length = 347

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 63.4 bits (155), Expect = 6e-10
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 40/171 (23%)

Query: 740 IKALSLCMTEHPILNAS---ID--PTQENILVNPDH-NISIAIDT--KHG---LVVPNIK 788
           ++AL       P +N     +D  PT    LV P H N+ +AID   K G   LVVP IK
Sbjct: 181 VQALK----AFPNMNRHYAEVDGKPT----LVTPAHVNLGLAIDLPKKDGSRQLVVPAIK 232

Query: 789 SVNKLCLL-------DITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
               +          DI R        + +GK+   D QG TIS++N G +G     P +
Sbjct: 233 GAETMDFAQFWAAYEDIVRR-------ARDGKLTADDFQGTTISLTNPGGIGTVHSVPRL 285

Query: 842 VPGQVCIVAFGKIQLLPRFDA--EMRI----VAKCILNVTWAADHRVVDGA 886
           + GQ  I+  G ++    F    E R+    ++K ++ +T   DHR++ GA
Sbjct: 286 MKGQGAIIGVGAMEYPAEFQGASEERLAELGISK-VMTLTSTYDHRIIQGA 335

Length = 1228

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 60.6 bits (148), Expect = 2e-09
 Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 48/200 (24%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           ++ K+  + E + E  I  W+     G  +   +V+ E+E+DK  + + +   G + ++ 
Sbjct: 3   VEIKVPTLPESVTEATIATWH--KKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
             EGD   VG+ L  I+      AA  A +    AA   ++      ++Q N+ L     
Sbjct: 61  AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDAL----- 115

Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
                                                    +P+ R++     +D   ++
Sbjct: 116 -----------------------------------------SPAARKLAAENGLDASAVK 134

Query: 368 GTGKQGRVLKEDIITYMNSP 387
           GTGK GRV KED++  + + 
Sbjct: 135 GTGKGGRVTKEDVLAALAAA 154

Length = 407

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           I+  + DIG    EV + E    V  G ++     +  VE DKAS+ + S   G V+++ 
Sbjct: 3   IEIKVPDIGAD--EVEVTEIL--VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58

Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRK-----AAPGVS---EVNTPD 553
              GD    G  ++  E  D    A  A + ++K     AAP  +   +V+ PD
Sbjct: 59  VKVGDKVETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVHVPD 112

Length = 633

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 58.1 bits (141), Expect = 2e-08
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           I+ K+ DIG    EV + E    V  G ++     +  VE DKAS+ + S   G V+++ 
Sbjct: 3   IEIKVPDIGAD--EVEVTEIL--VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRK-----AAPGVS---EVNTPD 293
              GD    G  ++  E  D    A  A + ++K     AAP  +   +V+ PD
Sbjct: 59  VKVGDKVETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVHVPD 112

Length = 633

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 57.7 bits (139), Expect = 2e-08
 Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 23/193 (11%)

Query: 191 KLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 250
           K+ ++GE + E  +  W   V +   ++E   + EV +DK    I S   GT+ ++   E
Sbjct: 130 KMPELGESVTEGTVTSWLKAVGDTVEVDE--PLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 251 GDVALVGKPLLDIEVEDEGVAAEEA--DSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNK 308
            D   VG  L  I   D   A  E   +     +  G      PD + +        P  
Sbjct: 188 DDTVEVGTVLAIIG--DANAAPAEPAEEEAPAPSEAGSEP--APDPAARAPHAAPDPPAP 243

Query: 309 VNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRG 368
                    P     +S   +  ++               TP VR++ K   +D   ++G
Sbjct: 244 APAPAKTAAPAAAAPVSSGDSGPYV---------------TPLVRKLAKDKGVDLSTVKG 288

Query: 369 TGKQGRVLKEDII 381
           TG  GR+ K+D++
Sbjct: 289 TGVGGRIRKQDVL 301

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
           ++ A+P+ R++     ID  +++GTG  GR+ KED+
Sbjct: 2   RVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDV 37

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.9 bits (133), Expect = 2e-07
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 29/142 (20%)

Query: 902  LVNPDH-NISIAIDT--KHG---LVVPNIKSVNKLSLL-------DITRELLRIQGCSHE 948
            LV P H N+ +AID   K G   LVVP IK    +          DI R        + +
Sbjct: 203  LVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRR-------ARD 255

Query: 949  GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD-------AEM 1001
            GK+   D QG TIS++N G +G     P ++  Q  I+  G ++    F        AE+
Sbjct: 256  GKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAEL 315

Query: 1002 RVVAKCILNVTWAADHRVVDGA 1023
              ++K ++ +T   DHR++ GA
Sbjct: 316  -GISK-VMTLTSTYDHRIIQGA 335

Length = 1228

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 53.9 bits (130), Expect = 4e-07
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
               ++ DIG    EV + E    V  G  +     +  VE DKAS+ + + + GTV+++
Sbjct: 105 AKDVHVPDIGSD--EVEVTEIL--VKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI 160

Query: 507 YYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDR------KAAPGVSEVNTPD 553
               GD    G  ++  EV  E  AA  A +          AA GV +VN PD
Sbjct: 161 KVNVGDKVSTGSLIMVFEVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPD 213

Length = 633

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 253
           DIG    EV + E    V  G  +     +  VE DKAS+ + + + GTV+++    GD 
Sbjct: 112 DIGSD--EVEVTEIL--VKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 167

Query: 254 ALVGKPLLDIEVEDEGVAAEEADSLDR------KAAPGVSEVNTPD 293
              G  ++  EV  E  AA  A +          AA GV +VN PD
Sbjct: 168 VSTGSLIMVFEVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPD 213

Length = 633

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSP 387
           KILATP  R + K   ID   L+G+G+ G++L ED+  ++ S 
Sbjct: 1   KILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSL 43

Length = 306

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 47.2 bits (113), Expect = 3e-05
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGV 270
           V EG  + + D + +VE+DK +  + +   GT+R+    EG+   VG  L    V D  V
Sbjct: 24  VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALL--AVVADAEV 81

Query: 271 AAEEAD 276
           +  E D
Sbjct: 82  SDAEID 87

Length = 371

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 47.2 bits (113), Expect = 3e-05
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGV 530
           V EG  + + D + +VE+DK +  + +   GT+R+    EG+   VG  L    V D  V
Sbjct: 24  VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALL--AVVADAEV 81

Query: 531 AAEEAD 536
           +  E D
Sbjct: 82  SDAEID 87

Length = 371

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
              G ++ + DV+ E+E+ KA+  + +   GTV+KV   EG       PL+ I
Sbjct: 21  KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
              G ++ + DV+ E+E+ KA+  + +   GTV+KV   EG       PL+ I
Sbjct: 21  KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
           V  G  +     +  +E+ K    I +   G V+++    GD    G PL  IE
Sbjct: 86  VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139

Length = 140

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
           V  G  +     +  +E+ K    I +   G V+++    GD    G PL  IE
Sbjct: 86  VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139

Length = 140

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
           V EG ++     +  +E+ K    +T+   G V+++   EGD    G+ L+ I
Sbjct: 15  VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
           V EG ++     +  +E+ K    +T+   G V+++   EGD    G+ L+ I
Sbjct: 15  VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 23/135 (17%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
            + K+ DIG+   E  + E       G ++     +  +ESDKAS+ + S   G ++++ 
Sbjct: 1   TEIKVPDIGDN-EEGEVIEVLVKP--GDKVEAGQSLITLESDKASMEVPSSAAGIIKEIK 57

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEE--------------ADSLDRKAAP------GVS 287
              GD   VG  +  +EV     A  E              A +   +AAP      GV 
Sbjct: 58  VKVGDTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQ 117

Query: 288 EVNTPDTSDQPNETL 302
           EV  PD  D    T+
Sbjct: 118 EVTVPDIGDIEKVTV 132

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 43.5 bits (103), Expect = 7e-04
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 207  WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
            W   V  G R+     +  +E+ K  + +++   G V K+    GD+   G  +  +E
Sbjct: 1144 WKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 43.5 bits (103), Expect = 7e-04
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 467  WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
            W   V  G R+     +  +E+ K  + +++   G V K+    GD+   G  +  +E
Sbjct: 1144 WKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 36.2 bits (85), Expect = 0.002
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 567 NKIDTKELRGTGKQGRVLKEDI 588
             ID  +++GTG  GR+ KED+
Sbjct: 16  KGIDLSQVKGTGPGGRITKEDV 37

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
            V EG  ++  D++  +E+ K   T+ +   G V K+   EGD   VG  L++ E
Sbjct: 590 AVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644

Length = 645

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
            V EG  ++  D++  +E+ K   T+ +   G V K+   EGD   VG  L++ E
Sbjct: 590 AVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644

Length = 645

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1045
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
KOG0558|consensus	474		100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
KOG0557|consensus	470		100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
KOG0559|consensus	457		100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
KOG0557|consensus	470		100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
KOG0559|consensus	457		100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
KOG0558|consensus	474		100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.97
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.64
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.64
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.6
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.59
PRK06748	83	hypothetical protein; Validated	99.53
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.49
PRK06748	83	hypothetical protein; Validated	99.46
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.36
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.31
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.31
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.27
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.26
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.24
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.22
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.21
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.13
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.11
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.1
PRK07051	80	hypothetical protein; Validated	99.06
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.04
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.0
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	98.99
PRK07051	80	hypothetical protein; Validated	98.97
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	98.97
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.96
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	98.91
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.9
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.87
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	98.85
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	98.85
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.85
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.84
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	98.8
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.75
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.74
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.72
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.71
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	98.71
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.65
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.64
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.62
PRK13757	219	chloramphenicol acetyltransferase; Provisional	98.59
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.56
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.5
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.48
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.47
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.43
PRK12999	1146	pyruvate carboxylase; Reviewed	98.4
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.33
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.31
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.3
PRK12999	1146	pyruvate carboxylase; Reviewed	98.18
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.12
KOG0369|consensus	1176		98.01
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	97.92
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	97.87
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	97.73
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	97.63
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.58
KOG0369|consensus	1176		97.51
PRK01202	127	glycine cleavage system protein H; Provisional	97.48
KOG0238|consensus	670		97.47
PRK00624	114	glycine cleavage system protein H; Provisional	97.44
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.29
PRK13380	144	glycine cleavage system protein H; Provisional	97.21
KOG0368|consensus	2196		97.16
PRK00624	114	glycine cleavage system protein H; Provisional	97.12
KOG0238|consensus	670		97.05
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	96.99
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	96.96
PRK13380	144	glycine cleavage system protein H; Provisional	96.93
KOG0368|consensus	2196		96.85
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	96.84
PRK09783	409	copper/silver efflux system membrane fusion protei	96.76
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	96.75
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.69
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	96.68
PRK01202	127	glycine cleavage system protein H; Provisional	96.65
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	96.61
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	96.57
PRK15136	390	multidrug efflux system protein EmrA; Provisional	96.55
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	96.49
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	96.48
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	96.47
PRK03598	331	putative efflux pump membrane fusion protein; Prov	96.37
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	96.28
PRK09783	409	copper/silver efflux system membrane fusion protei	96.25
PRK09859	385	multidrug efflux system protein MdtE; Provisional	96.2
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.2
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.18
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	96.07
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	95.95
PRK15136	390	multidrug efflux system protein EmrA; Provisional	95.91
PRK11578	370	macrolide transporter subunit MacA; Provisional	95.89
PRK12784	84	hypothetical protein; Provisional	95.89
PRK03598	331	putative efflux pump membrane fusion protein; Prov	95.88
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	95.84
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	95.71
PRK09859	385	multidrug efflux system protein MdtE; Provisional	95.66
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	95.51
PRK12784	84	hypothetical protein; Provisional	95.51
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	95.45
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	95.43
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	95.35
PRK13757	219	chloramphenicol acetyltransferase; Provisional	95.28
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	95.26
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	95.13
PRK11578	370	macrolide transporter subunit MacA; Provisional	95.11
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	94.9
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.51
PF01398	114	JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte	94.32
cd08057	157	MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai	94.07
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.01
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	93.21
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	92.71
cd08067	187	MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu	92.49
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	92.3
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	92.2
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	92.17
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	91.82
cd07767	116	MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al	91.02
smart00232	135	JAB_MPN JAB/MPN domain. Domain in Jun kinase activ	90.4
PLN03246	303	26S proteasome regulatory subunit; Provisional	90.16
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	89.61
cd08062	280	MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w	89.56
COG3608	331	Predicted deacylase [General function prediction o	89.46
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	89.46
PF13437	105	HlyD_3: HlyD family secretion protein	89.09
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	88.85
cd08058	119	MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w	88.67
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	88.66
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	88.48
PF00529	305	HlyD: HlyD family secretion protein the correspond	87.51
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	87.3
PF13437	105	HlyD_3: HlyD family secretion protein	87.12
COG3608	331	Predicted deacylase [General function prediction o	86.75
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	85.85
PF00529	305	HlyD: HlyD family secretion protein the correspond	85.46
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	85.45
cd08063	288	MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit	85.2
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	85.08
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	85.06
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	84.93
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	84.17
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	83.68
cd08066	173	MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ	83.24
KOG3373|consensus	172		82.63
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	82.21
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.17
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	80.58
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	80.43
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	80.18

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=1.3e-94  Score=867.82  Aligned_cols=539  Identities=24%  Similarity=0.375  Sum_probs=413.4

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  267 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~  267 (1045)
                      ++|+||+||++|.||+|++|+  |++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|+..+
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~~   80 (590)
T TIGR02927         3 FSVEMPALGESVTEGTITQWL--KAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEAG   80 (590)
T ss_pred             eeEECCCCCCCccEEEEEEEE--ECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeecc
Confidence            579999999999999999999  999999999999999999999999999999999999999999999999999997543


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCccccccccccccc
Q psy6394         268 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKIL  347 (1045)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (1045)
                      +.........    .++.      +++...++..    ..+.    . .++..+.     ..     .            
T Consensus        81 ~~~~~~~~~~----~~~~------~~~~~~~~~~----~~~~----~-~~~~~~~-----~~-----~------------  119 (590)
T TIGR02927        81 EASAEAGAED----SAAA------AEPEEAPAEE----APKE----E-PKAAPAE-----SV-----E------------  119 (590)
T ss_pred             cccccccccc----cccc------cccccccccc----cccc----c-ccccccc-----cc-----c------------
Confidence            3211000000    0000      0000000000    0000    0 0000000     00     0            


Q ss_pred             cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccccccccceeEEecceeeecccccccccCCCC
Q psy6394         348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHL  427 (1045)
Q Consensus       348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~r~~m~k~Mt~S~~~~~  427 (1045)
                      .+|                                                                             
T Consensus       120 ~a~-----------------------------------------------------------------------------  122 (590)
T TIGR02927       120 QAP-----------------------------------------------------------------------------  122 (590)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             CCCCcccccccccc--cccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEE
Q psy6394         428 STPPLQCHHHLHTS--CIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK  505 (1045)
Q Consensus       428 s~~~~~~~~~~~~s--~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~  505 (1045)
                               .++..  ....+.++|+||+||++|+||+|.+|+  |++||.|++||+||+|||||+++||+||++|+|.+
T Consensus       123 ---------~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~  191 (590)
T TIGR02927       123 ---------AESSAPSQGGGAATDIEMPELGESVTEGTITQWL--KAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILE  191 (590)
T ss_pred             ---------cccccccccCCCceEEEcCCCCCCcceEEEEEEE--eCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEE
Confidence                     00000  001224789999999999999999999  99999999999999999999999999999999999


Q ss_pred             EeeCCCCEEecCCceEEEeecCccccc------cc-c------ccccc--c-----CCC--------CCC----CC----
Q psy6394         506 VYYGEGDVALVGKPLLDIEVEDEGVAA------EE-A------DSLDR--K-----AAP--------GVS----EV----  549 (1045)
Q Consensus       506 i~~~~G~~v~vg~~l~~i~~~~~~~~~------~~-~------~~~~~--~-----~~~--------~~~----~~----  549 (1045)
                      |++++|+.|++|++|++|+.+++..+.      .. .      .+.+.  .     ..+        ...    ..    
T Consensus       192 i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (590)
T TIGR02927       192 ILAEEDDTVDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAA  271 (590)
T ss_pred             EecCCCCEecCCCEEEEEecCCCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccc
Confidence            999999999999999999754322100      00 0      00000  0     000        000    00    


Q ss_pred             -CCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeecccccccccccc
Q psy6394         550 -NTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMT  628 (1045)
Q Consensus       550 -~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (1045)
                       ....+++||++||||+|+||||+.|+|||++|||+|+||++|+.........+.++++..+                  
T Consensus       272 ~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~------------------  333 (590)
T TIGR02927       272 NSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAA------------------  333 (590)
T ss_pred             cccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccC------------------
Confidence             1124678999999999999999999999999999999999997532111000000000000                  


Q ss_pred             ccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEee
Q psy6394         629 EANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTE  707 (1045)
Q Consensus       629 ~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~  707 (1045)
                           +                      .....+.  ..+... ......+.+||++|||.||++|++| +++||+|++.
T Consensus       334 -----~----------------------~~~~~~~--~~~~~~-~~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~  383 (590)
T TIGR02927       334 -----P----------------------AAAAAAS--ASPAPA-KAHLRGTTQKANRIREITAKKTREALQASAQLTQLH  383 (590)
T ss_pred             -----c----------------------ccccccc--CCCccc-cccccCceeeccHHHHHHHHHHHHHhccCCeEEEEe
Confidence                 0                      0000000  000000 0001245689999999999999999 7899999999


Q ss_pred             cccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeee
Q psy6394         708 EVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNI  787 (1045)
Q Consensus       708 evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvI  787 (1045)
                      ++|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.||++|+++++.|++++++||||||++++||+||||
T Consensus       384 evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vPvI  463 (590)
T TIGR02927       384 EVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSPVI  463 (590)
T ss_pred             EEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEeccc
Confidence            99999999999999976555423899999999999999999999999999876778999999999999999999999999


Q ss_pred             cccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEec--cCC-
Q psy6394         788 KSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD--AEM-  864 (1045)
Q Consensus       788 r~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~--~~g-  864 (1045)
                      ||+|+++|.+|++++++|++++|+|||+++||+||||||||+|+||+++|+|||||||+||||+|+++++|+|+  .+| 
T Consensus       464 k~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~  543 (590)
T TIGR02927       464 HNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGI  543 (590)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999984  344 


Q ss_pred             -ceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         865 -RIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       865 -~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                       .+++|++|++||+||||||||+++|+||+.|+++   ||+|.++
T Consensus       544 ~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~---LE~~~~~  585 (590)
T TIGR02927       544 DSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDR---LEEAAFE  585 (590)
T ss_pred             ccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHH---HhCcccc
Confidence             4999999999999999999999999999999999   9997654

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=1.6e-89  Score=818.28  Aligned_cols=518  Identities=26%  Similarity=0.400  Sum_probs=409.8

Q ss_pred             EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecCc
Q psy6394         189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE  268 (1045)
Q Consensus       189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~~  268 (1045)
                      +|+||+||+. .+|+|++|+  |++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|++|+.++.
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~--v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~~   78 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVL--VKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGAG   78 (546)
T ss_pred             ceecCCCCCC-CceEEEEEE--eCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecccc
Confidence            5899999987 899999999  9999999999999999999999999999999999999999999999999999974332


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCcccccccccccccc
Q psy6394         269 GVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILA  348 (1045)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  348 (1045)
                      ... .         .....+ ..      ++..      .       ..+.  +      .     +             
T Consensus        79 ~~~-~---------~~~~~~-~~------~~~~------~-------~~~~--~------~-----~-------------  102 (546)
T TIGR01348        79 AQA-Q---------AEAKKE-AA------PAPT------A-------GAPA--P------A-----A-------------  102 (546)
T ss_pred             ccc-c---------cccccc-cc------cccc------c-------cccc--c------c-----c-------------
Confidence            100 0         000000 00      0000      0       0000  0      0     0             


Q ss_pred             ChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccccccccceeEEecceeeecccccccccCCCCC
Q psy6394         349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLS  428 (1045)
Q Consensus       349 tP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~r~~m~k~Mt~S~~~~~s  428 (1045)
                       +                                      +                                     ..
T Consensus       103 -~--------------------------------------~-------------------------------------~~  106 (546)
T TIGR01348       103 -Q--------------------------------------A-------------------------------------QA  106 (546)
T ss_pred             -c--------------------------------------c-------------------------------------cc
Confidence             0                                      0                                     00


Q ss_pred             CCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee
Q psy6394         429 TPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY  508 (1045)
Q Consensus       429 ~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~  508 (1045)
                      .+        +.+. ....++|+||++|+ |+||+|++|+  |++||.|++||+|++|||||+.++|+||++|+|.++++
T Consensus       107 ~~--------~~~~-~~~~~~~~~P~~g~-~~eg~i~~w~--v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v  174 (546)
T TIGR01348       107 AP--------AAGQ-SSGVQEVTVPDIGD-IEKVTVIEVL--VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV  174 (546)
T ss_pred             cc--------cccc-cCCceEEeCCCCCC-cceeEEeEEe--eCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEec
Confidence            00        0000 01136899999999 9999999999  99999999999999999999999999999999999999


Q ss_pred             CCCCEEecCCceEEEeecCccccc--cc--c---cccccc-----C-CCC--C--CCC-------CCCCC-CCCcccccc
Q psy6394         509 GEGDVALVGKPLLDIEVEDEGVAA--EE--A---DSLDRK-----A-APG--V--SEV-------NTPDT-SDQPNETLH  563 (1045)
Q Consensus       509 ~~G~~v~vg~~l~~i~~~~~~~~~--~~--~---~~~~~~-----~-~~~--~--~~~-------~~~~~-~asP~vr~l  563 (1045)
                      ++|+.|++|++|++|+..++....  .+  .   .+.+..     . .+.  .  .+.       ....+ ++||++|++
T Consensus       175 ~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~l  254 (546)
T TIGR01348       175 KVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRL  254 (546)
T ss_pred             CCCCEecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHH
Confidence            999999999999999754422100  00  0   000000     0 000  0  000       01123 689999999


Q ss_pred             CCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCcccccccc
Q psy6394         564 KDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVD  643 (1045)
Q Consensus       564 a~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d  643 (1045)
                      |+++||||+.|+|||++|||+++||++|+...... .++.+++  ++.                                
T Consensus       255 A~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~-~~~~~~~--~~~--------------------------------  299 (546)
T TIGR01348       255 AREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVR-AQAAAAS--AAG--------------------------------  299 (546)
T ss_pred             HHHcCCCHhhCCCCCCCCeEeHHHHHHHhhccccc-cCccccc--ccC--------------------------------
Confidence            99999999999999999999999999997432110 0000000  000                                


Q ss_pred             ccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHH
Q psy6394         644 TTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVS  722 (1045)
Q Consensus       644 ~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~  722 (1045)
                                      +.+..+..+..........+.+||++|||.||++|.+| +++||+|++.++|+++|+++|++++
T Consensus       300 ----------------~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~  363 (546)
T TIGR01348       300 ----------------GAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQN  363 (546)
T ss_pred             ----------------CccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHH
Confidence                            00000000000000011246689999999999999999 8999999999999999999999999


Q ss_pred             HHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHH
Q psy6394         723 ALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITREL  802 (1045)
Q Consensus       723 ~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l  802 (1045)
                      +.+.+.| .|+|+++||+||+++||++||.||++|+++++.|++++++||||||++++||+|||||++|.+++.+|++++
T Consensus       364 ~~~~~~g-~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~  442 (546)
T TIGR01348       364 AAVEKEG-VKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALEL  442 (546)
T ss_pred             hhhhhcC-CcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHH
Confidence            8666555 899999999999999999999999999876678999999999999999999999999999999999999999


Q ss_pred             HHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEecccee
Q psy6394         803 LRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRV  882 (1045)
Q Consensus       803 ~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRv  882 (1045)
                      ++|.+++|+|+|+++||+||||||||+|+||+++|+|||||||+||||+|+++++|+++ +|++++|++|+++|+|||||
T Consensus       443 ~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~~~~~m~ltls~DHRv  521 (546)
T TIGR01348       443 SDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFEPRLMLPLSLSYDHRV  521 (546)
T ss_pred             HHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEEEEEEEEEeEeccchh
Confidence            99999999999999999999999999999999999999999999999999999999995 67999999999999999999


Q ss_pred             ecchhhhhhhhhhhhcccccccCCcce
Q psy6394         883 VDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       883 iDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |||+++|+||+.|+++   +|+|..++
T Consensus       522 iDGa~aa~Fl~~~~~~---le~P~~ll  545 (546)
T TIGR01348       522 IDGADAARFTTYICES---LADIRRLL  545 (546)
T ss_pred             cChHHHHHHHHHHHHH---HhCHHhhh
Confidence            9999999999999999   99998654

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=5.8e-86  Score=801.61  Aligned_cols=594  Identities=25%  Similarity=0.339  Sum_probs=417.2

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  267 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~  267 (1045)
                      .+|+||+||  |+||+|++|+  |++||.|++||+|++|||||++++|+||.+|+|.++++++||.|++|++|+.|+.++
T Consensus         3 ~~i~~P~lg--~~eg~i~~~~--v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~~   78 (633)
T PRK11854          3 IEIKVPDIG--ADEVEVTEIL--VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESAD   78 (633)
T ss_pred             ceEeeCCCC--CceEEEEEEE--eCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEeccc
Confidence            479999999  9999999999  999999999999999999999999999999999999999999999999999997432


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCccccccccccccc
Q psy6394         268 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKIL  347 (1045)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (1045)
                      ......+      +.++.      +.....+.            .+.+.+                          ....
T Consensus        79 ~~~~~~~------~~~~~------~~~~~~~~------------~~~~~~--------------------------~~~i  108 (633)
T PRK11854         79 GAADAAP------AQAEE------KKEAAPAA------------APAAAA--------------------------AKDV  108 (633)
T ss_pred             ccccccc------ccccc------cccccccc------------ccccCC--------------------------ceEE
Confidence            1100000      00000      00000000            000000                          0000


Q ss_pred             cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccc-------------cccccceeEEecceeee
Q psy6394         348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTA-------------HVREASNVISIRGYVKG  414 (1045)
Q Consensus       348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~g~r~~  414 (1045)
                      ..|..-  ..+-.+-...+   -.+-.|.++|.+.-+...........+.             .+...+....|..... 
T Consensus       109 ~lp~~g--~~eg~v~~~~v---~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~-  182 (633)
T PRK11854        109 HVPDIG--SDEVEVTEILV---KVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVAGE-  182 (633)
T ss_pred             ecccCC--CCCceEeEEEe---CCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCEEcCCcEeeEEecccc-
Confidence            000000  00000000000   0112233333332222111111100000             0000111111110000 


Q ss_pred             cccccccccCCCCCCCCccccccccccc-ccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceee
Q psy6394         415 MFKSMTEAHGHHLSTPPLQCHHHLHTSC-IRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV  493 (1045)
Q Consensus       415 m~k~Mt~S~~~~~s~~~~~~~~~~~~s~-~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~  493 (1045)
                        ..+ .+.    +...   ...+.... ...+.++|+||+||  |+||+|++|+  |++||.|++||+||+|||||+.+
T Consensus       183 --~~~-~~~----~~~~---~~~~~~~~~~a~~~~~~~~p~lg--~~eg~v~~w~--v~~Gd~V~~g~~l~~vetdK~~~  248 (633)
T PRK11854        183 --APA-AAP----AAAE---AAAPAAAPAAAAGVKDVNVPDIG--GDEVEVTEVM--VKVGDKVEAEQSLITVEGDKASM  248 (633)
T ss_pred             --ccc-ccc----cccc---cccccccccccCCceEEecCCCc--ccceEEEEEE--ecCCCeecCCCceEEEEecceee
Confidence              000 000    0000   00011111 12356899999999  8999999999  99999999999999999999999


Q ss_pred             EEecCCCEEEEEEeeCCCCEEecCCceEEEeecCccccccc-----cccccc--c-CCC--CC--CC-------CCCCCC
Q psy6394         494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEE-----ADSLDR--K-AAP--GV--SE-------VNTPDT  554 (1045)
Q Consensus       494 ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~~~~~~-----~~~~~~--~-~~~--~~--~~-------~~~~~~  554 (1045)
                      +|+||++|+|.+|++++|+.|++|++|+.|+.+++.....+     ..+.+.  . +.+  .+  ..       .....+
T Consensus       249 ~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (633)
T PRK11854        249 EVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYV  328 (633)
T ss_pred             EeeCCCCeEEEEEecCCCCEecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCcc
Confidence            99999999999999999999999999999975443211100     000000  0 000  00  00       011235


Q ss_pred             CCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCC
Q psy6394         555 SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIP  634 (1045)
Q Consensus       555 ~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  634 (1045)
                      ++||++|++|+++||||+.|+|||++|||+++||++|+........ +++.++..                         
T Consensus       329 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~-~~~~~~~~-------------------------  382 (633)
T PRK11854        329 HATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAE-AAPAAAAA-------------------------  382 (633)
T ss_pred             CCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccc-cCCccccc-------------------------
Confidence            7899999999999999999999999999999999999753211000 00000000                         


Q ss_pred             CccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchH
Q psy6394         635 SLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQ  713 (1045)
Q Consensus       635 ~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~  713 (1045)
                                             ....+.....+.......+..+++||+++||.||++|.+| +++||+|++.++|+|.
T Consensus       383 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~  439 (633)
T PRK11854        383 -----------------------GGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITE  439 (633)
T ss_pred             -----------------------ccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHH
Confidence                                   0000000000000000011235689999999999999999 8999999999999999


Q ss_pred             HHHHHHHHHHHHHh-ccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeeccccc
Q psy6394         714 LRDVKNQVSALYQE-KFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNK  792 (1045)
Q Consensus       714 l~~~r~~~~~~~~~-~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~  792 (1045)
                      |+++|+++++.... ..+.|+|+++||+||+++||++||.||++|+++++++++++++||||||++++||++||||+++.
T Consensus       440 l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~  519 (633)
T PRK11854        440 LEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNK  519 (633)
T ss_pred             HHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCcc
Confidence            99999998854332 22389999999999999999999999999986567899999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEee
Q psy6394         793 LCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCIL  872 (1045)
Q Consensus       793 ~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m  872 (1045)
                      +++.+|+++++++.+++|+|+|+++|++||||||||+|+||+++|+|||||||+||||+|++.++|+++ +|.+++|++|
T Consensus       520 ~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~~r~~m  598 (633)
T PRK11854        520 KGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFAPRLML  598 (633)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999984 6789999999


Q ss_pred             eEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         873 NVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       873 ~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      +++|+||||+|||+++|+||+.|+++   ||+|..+
T Consensus       599 ~lslt~DHRviDGa~aa~Fl~~lk~~---LE~p~~l  631 (633)
T PRK11854        599 PLSLSYDHRVIDGADGARFITIINDR---LSDIRRL  631 (633)
T ss_pred             EEeEEccchhcchHHHHHHHHHHHHH---HhCHHhh
Confidence            99999999999999999999999999   9999854

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.4e-82  Score=762.80  Aligned_cols=523  Identities=32%  Similarity=0.479  Sum_probs=410.1

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  267 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~  267 (1045)
                      ++++||++|+ |.+|+|++|+  |++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus         3 ~~i~~p~~g~-~~~g~i~~~~--v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~   79 (547)
T PRK11855          3 IEFKVPDIGE-VVEVEVIEWL--VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG   79 (547)
T ss_pred             ceeecCCcCC-CceEEEEEEE--cCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence            5799999999 9999999999  999999999999999999999999999999999999999999999999999996432


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCccccccccccccc
Q psy6394         268 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKIL  347 (1045)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (1045)
                      ....+.       +.++.      +.    +..+    +...+..+.                                 
T Consensus        80 ~~~~~~-------~~~~~------~~----~~~~----~~~~~~~~~---------------------------------  105 (547)
T PRK11855         80 AAAAAA-------APAAA------AA----PAAA----AAAAPAPAA---------------------------------  105 (547)
T ss_pred             cccccc-------ccccc------cc----cccc----ccccccccc---------------------------------
Confidence            200000       00000      00    0000    000000000                                 


Q ss_pred             cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccccccccceeEEecceeeecccccccccCCCC
Q psy6394         348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHL  427 (1045)
Q Consensus       348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~r~~m~k~Mt~S~~~~~  427 (1045)
                      +.|+                                                                            
T Consensus       106 ~~~~----------------------------------------------------------------------------  109 (547)
T PRK11855        106 AAPA----------------------------------------------------------------------------  109 (547)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         428 STPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       428 s~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      ..        +..  .....++|+||+||+ |+||+|++|+  |++||.|++||.|++|||||+.++|+||++|+|.+++
T Consensus       110 ~~--------~~~--~~~~~~~~~~P~~g~-~~eg~i~~w~--v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~  176 (547)
T PRK11855        110 AA--------AAA--AGGGVVEVKVPDIGE-ITEVEVIEWL--VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK  176 (547)
T ss_pred             cc--------cCc--ccCCceEEecCCCCC-cceeEEeEEE--eCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEe
Confidence            00        000  011246899999999 9999999999  9999999999999999999999999999999999999


Q ss_pred             eCCCCEEecCCceEEEeecCccc-cc---ccccc----cc-ccCCC------CCC--C-CC-CCCC-CCCccccccCCCC
Q psy6394         508 YGEGDVALVGKPLLDIEVEDEGV-AA---EEADS----LD-RKAAP------GVS--E-VN-TPDT-SDQPNETLHKDPN  567 (1045)
Q Consensus       508 ~~~G~~v~vg~~l~~i~~~~~~~-~~---~~~~~----~~-~~~~~------~~~--~-~~-~~~~-~asP~vr~la~e~  567 (1045)
                      +++|+.|.+|++|++|...++.. ..   ....+    .+ ....+      ...  . .. .... ++||++|++|+++
T Consensus       177 ~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~  256 (547)
T PRK11855        177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLAREL  256 (547)
T ss_pred             cCCCCEecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHh
Confidence            99999999999999997543211 00   00000    00 00000      000  0 00 1123 7899999999999


Q ss_pred             CCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCcccccccccccc
Q psy6394         568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQL  647 (1045)
Q Consensus       568 gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~  647 (1045)
                      ||||+.|+|||++|||+++||++|+........  .++....+                     . +.            
T Consensus       257 gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~--~~~~~~~~---------------------~-~~------------  300 (547)
T PRK11855        257 GVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAA--AAAAAAAA---------------------A-GG------------  300 (547)
T ss_pred             CCCHHHCcCCCCCCcEeHHHHHHHhhccccccc--cccccccc---------------------c-cc------------
Confidence            999999999999999999999999753211000  00000000                     0 00            


Q ss_pred             ccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHH
Q psy6394         648 RDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ  726 (1045)
Q Consensus       648 ~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~  726 (1045)
                                 ...++ ...+.......+..+.+||+++||.||++|++| +++||+|++.++|+++|+++|+++++.+.
T Consensus       301 -----------~~~~~-~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~  368 (547)
T PRK11855        301 -----------GGLGL-LPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAE  368 (547)
T ss_pred             -----------ccccc-cCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhh
Confidence                       00000 000000000011245689999999999999999 79999999999999999999999997666


Q ss_pred             hccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHH
Q psy6394         727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQ  806 (1045)
Q Consensus       727 ~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~  806 (1045)
                      +.| .++||++|++||+++||++||.||++|+++++.+++++++|||+||++++||++|||+|++.+++.+|++++++++
T Consensus       369 ~~g-~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~  447 (547)
T PRK11855        369 KAG-VKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELA  447 (547)
T ss_pred             hcC-CCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHH
Confidence            556 9999999999999999999999999998656789999999999999999999999999999999999999999999


Q ss_pred             hccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecch
Q psy6394         807 GCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGA  886 (1045)
Q Consensus       807 ~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa  886 (1045)
                      +++|+|+|+++|++||||||||+|+||.++|+|+|||||+||||+|++.++|++ .+|.+..|++|+++|+||||+|||+
T Consensus       448 ~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~-~~~~~~~r~~m~lslt~DHRviDG~  526 (547)
T PRK11855        448 KKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVW-DGKEFVPRLMLPLSLSYDHRVIDGA  526 (547)
T ss_pred             HHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeee-eCCEEEEEeEEEEeEEccchhcCcH
Confidence            999999999999999999999999999999999999999999999999999976 5788999999999999999999999


Q ss_pred             hhhhhhhhhhhcccccccCCcce
Q psy6394         887 TVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       887 ~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      ++|+||+.|+++   |++|..++
T Consensus       527 ~aa~Fl~~l~~~---le~p~~ll  546 (547)
T PRK11855        527 TAARFTNYLKQL---LADPRRML  546 (547)
T ss_pred             HHHHHHHHHHHH---HhCHHhhh
Confidence            999999999999   99998654

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=3.6e-80  Score=712.53  Aligned_cols=396  Identities=27%  Similarity=0.446  Sum_probs=335.4

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .++|+||+||++|+||+|++|+  |++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|++|+..
T Consensus         2 ~~~i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (407)
T PRK05704          2 MVEIKVPTLPESVTEATIATWH--KKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG   79 (407)
T ss_pred             CeeEecCCCCCCCceEEEEEEE--eCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            4589999999999999999999  99999999999999999999999999999999999999999999999999999865


Q ss_pred             Cccccccccc--cccccC--CCC-C-CCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCC
Q psy6394         527 DEGVAAEEAD--SLDRKA--APG-V-SEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETN  600 (1045)
Q Consensus       527 ~~~~~~~~~~--~~~~~~--~~~-~-~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~  600 (1045)
                      ++..+..+..  .++..+  .+. + .........+||++|++|+|+||||++|+|||++|||+++||++|+......  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~--  157 (407)
T PRK05704         80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAA--  157 (407)
T ss_pred             CcccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhccccc--
Confidence            4322111100  000000  000 0 0011123578999999999999999999999999999999999997431110  


Q ss_pred             CCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCccee
Q psy6394         601 PAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNV  680 (1045)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  680 (1045)
                       +.++++ .                                                 ....    .+..  ......+.
T Consensus       158 -~~~~~~-~-------------------------------------------------~~~~----~~~~--~~~~~~~~  180 (407)
T PRK05704        158 -PAAPAA-A-------------------------------------------------APAA----APAP--LGARPEER  180 (407)
T ss_pred             -CCCCCC-C-------------------------------------------------CCcC----CCcc--ccCCcceE
Confidence             000000 0                                                 0000    0000  00112356


Q ss_pred             eecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcC
Q psy6394         681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP  759 (1045)
Q Consensus       681 ~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~  759 (1045)
                      +||+++||.||++|++| +++||+|++.++|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.||++|++
T Consensus       181 vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~  260 (407)
T PRK05704        181 VPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDG  260 (407)
T ss_pred             eeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcC
Confidence            89999999999999999 89999999999999999999999997665543389999999999999999999999999985


Q ss_pred             CCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecc
Q psy6394         760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQP  839 (1045)
Q Consensus       760 ~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tp  839 (1045)
                        +++++++++||||||++++||+|||||++|++++.+|++++++|.+++|+|+|+++||+||||||||+|+||+.+|+|
T Consensus       261 --~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tp  338 (407)
T PRK05704        261 --DDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTP  338 (407)
T ss_pred             --CeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceec
Confidence              579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         840 IIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       840 ii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      ||||||+||||+|+++++|+++ +|++++|++|+++|+||||||||+++|+||+.++++   ||+|..++
T Consensus       339 iIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~---le~p~~ll  404 (407)
T PRK05704        339 IINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKEL---LEDPERLL  404 (407)
T ss_pred             cccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHH---hhCHHHHh
Confidence            9999999999999999999985 789999999999999999999999999999999999   99998754

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=9.6e-80  Score=707.39  Aligned_cols=392  Identities=26%  Similarity=0.444  Sum_probs=333.9

Q ss_pred             EEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCc
Q psy6394         449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE  528 (1045)
Q Consensus       449 ~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~  528 (1045)
                      +|+||+||++|+||+|++|+  |++||.|++||+|++|||||+.+||+||.+|+|.++++++|+.|++|++|++|+..++
T Consensus         2 ~i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~   79 (403)
T TIGR01347         2 EIKVPELAESITEGTVAEWH--KKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGND   79 (403)
T ss_pred             eEecCCCCCCCceEEEEEEE--eCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCC
Confidence            68999999999999999999  9999999999999999999999999999999999999999999999999999985432


Q ss_pred             cccccccccc---cccC-CC-CC-CCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCC
Q psy6394         529 GVAAEEADSL---DRKA-AP-GV-SEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPA  602 (1045)
Q Consensus       529 ~~~~~~~~~~---~~~~-~~-~~-~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~  602 (1045)
                      ..+..+....   +..+ .+ .+ +......+.+||++|++|+++||||+.|+|||++|||+++||++|+.....  . +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~--~-~  156 (403)
T TIGR01347        80 ATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPAS--A-Q  156 (403)
T ss_pred             CcccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccc--c-C
Confidence            1110000000   0000 00 00 001112457899999999999999999999999999999999999743110  0 0


Q ss_pred             ccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeee
Q psy6394         603 HTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIP  682 (1045)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p  682 (1045)
                      .+++  .                                                  .+.+   .|..   .....+.+|
T Consensus       157 ~~~~--~--------------------------------------------------~~~~---~~~~---~~~~~~~~p  178 (403)
T TIGR01347       157 APAP--A--------------------------------------------------AAAK---APAN---FTRPEERVK  178 (403)
T ss_pred             CCCC--C--------------------------------------------------cccC---Cccc---cCCCceEee
Confidence            0000  0                                                  0000   0000   011235689


Q ss_pred             cCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCC
Q psy6394         683 IRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQ  761 (1045)
Q Consensus       683 ls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~  761 (1045)
                      |+++||.||++|.+| +++||+|++.++|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.||++|++  
T Consensus       179 ls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~--  256 (403)
T TIGR01347       179 MTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDG--  256 (403)
T ss_pred             CcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcC--
Confidence            999999999999999 79999999999999999999999998666553389999999999999999999999999985  


Q ss_pred             ceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccc
Q psy6394         762 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII  841 (1045)
Q Consensus       762 ~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii  841 (1045)
                      +++++++++||||||++++||+|||||++|++++.+|++++++|.+++|+|+|+++||+||||||||+|+||+.+|+|||
T Consensus       257 ~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpii  336 (403)
T TIGR01347       257 DDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPII  336 (403)
T ss_pred             CEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       842 ~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      ||||+||||+|+++++|++. ||++++|++|+++|+||||||||+++|+||+.++++   ||+|..++
T Consensus       337 n~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~---le~p~~ll  400 (403)
T TIGR01347       337 NPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKEL---LEDPRRLL  400 (403)
T ss_pred             cCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHH---hcCHHHHH
Confidence            99999999999999999994 699999999999999999999999999999999999   99998654

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=2.6e-79  Score=717.15  Aligned_cols=408  Identities=25%  Similarity=0.356  Sum_probs=343.2

Q ss_pred             CcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCC
Q psy6394         431 PLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE  510 (1045)
Q Consensus       431 ~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~  510 (1045)
                      .-...|+|++.......++++||+||++|+||+|++|+  |++||.|++||+|++|||||+++|++||.+|+|.+|++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~--vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~e  173 (539)
T PLN02744         96 QMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWL--KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD  173 (539)
T ss_pred             cccccccccccccCCCCceEeCCCCCCCcceeEEEEEE--ecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecC
Confidence            34455677776665567999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             CC-EEecCCceEEEeecCcccc------c----ccc---c-cccc----c----CCCCCC-------CC--CCCCCCCCc
Q psy6394         511 GD-VALVGKPLLDIEVEDEGVA------A----EEA---D-SLDR----K----AAPGVS-------EV--NTPDTSDQP  558 (1045)
Q Consensus       511 G~-~v~vg~~l~~i~~~~~~~~------~----~~~---~-~~~~----~----~~~~~~-------~~--~~~~~~asP  558 (1045)
                      |+ .|++|++|+++..++++.+      +    .++   + +.++    .    +++.+.       ..  ....++++|
T Consensus       174 G~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP  253 (539)
T PLN02744        174 GAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASP  253 (539)
T ss_pred             CCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCc
Confidence            96 7999999999853222110      0    000   0 0000    0    000000       00  112357899


Q ss_pred             cccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccc
Q psy6394         559 NETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRL  638 (1045)
Q Consensus       559 ~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l  638 (1045)
                      ++|++|+|+||||+.|+|||++|||+++||++|+........  .+ +                                
T Consensus       254 ~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~--~~-~--------------------------------  298 (539)
T PLN02744        254 LARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGAT--AP-P--------------------------------  298 (539)
T ss_pred             hhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccC--CC-C--------------------------------
Confidence            999999999999999999999999999999999743111000  00 0                                


Q ss_pred             cccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHH
Q psy6394         639 TEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDV  717 (1045)
Q Consensus       639 ~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~  717 (1045)
                                           +.+.  ..+      ....+++||++|||.||++|.+| +++||+|++.++|+++|+++
T Consensus       299 ---------------------~~~~--~~~------~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~l  349 (539)
T PLN02744        299 ---------------------STDS--KAP------ALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMAL  349 (539)
T ss_pred             ---------------------Cccc--CCC------CCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHH
Confidence                                 0000  000      01135679999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHH
Q psy6394         718 KNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLD  797 (1045)
Q Consensus       718 r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~e  797 (1045)
                      |+++++.+....+.|+|+++||+||+++||++||.||++|++  +.|++++++||||||++++||+||||||+|++++.+
T Consensus       350 R~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~--~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~e  427 (539)
T PLN02744        350 RSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTD--DYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLST  427 (539)
T ss_pred             HHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeecc--CcEEEeCCcceEEEEECCCCeEECcCCCcccCCHHH
Confidence            999997665553389999999999999999999999999985  579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccCCCCCCccCCCceEeeccC-CccceeecccccccceeeEeeccceeEeEec-cCCceeEEEeeeEE
Q psy6394         798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG-NVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD-AEMRIVAKCILNVT  875 (1045)
Q Consensus       798 i~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG-~~G~~~~tpii~~pq~ailavG~i~~~p~~~-~~g~i~~~~~m~ls  875 (1045)
                      |++++++|.+++|+|+|+++||+||||||||+| +||+.+|+|||||||+||||+|+++++|++. .+|++++|++|+++
T Consensus       428 Ia~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~ls  507 (539)
T PLN02744        428 IAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVT  507 (539)
T ss_pred             HHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEe
Confidence            999999999999999999999999999999998 8999999999999999999999999999984 57899999999999


Q ss_pred             EeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         876 WAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       876 lt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |+||||||||+++|+||+.++++   +|+|..++
T Consensus       508 Ls~DHRvIDGa~AA~FL~~lk~~---LE~P~~ll  538 (539)
T PLN02744        508 LSCDHRVIDGAIGAEWLKAFKGY---IENPESML  538 (539)
T ss_pred             EecchhhhCcHHHHHHHHHHHHH---hcCHHhhh
Confidence            99999999999999999999999   99998654

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=7.9e-78  Score=695.68  Aligned_cols=404  Identities=38%  Similarity=0.622  Sum_probs=334.8

Q ss_pred             EEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCcc
Q psy6394         450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG  529 (1045)
Q Consensus       450 i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~  529 (1045)
                      |+||+||++|+||+|++|+  |++||.|++||+|+++||||+.++++|+.+|+|.++++++|+.+++|++|++|+.+++.
T Consensus         1 ~~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~   78 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWF--VKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQ   78 (416)
T ss_pred             CCCCCCCCCccEEEEEEEE--eCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCc
Confidence            5799999999999999999  99999999999999999999999999999999999999999999999999999754432


Q ss_pred             cccccccccccc----C--CCCCC-CCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCC-
Q psy6394         530 VAAEEADSLDRK----A--APGVS-EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNP-  601 (1045)
Q Consensus       530 ~~~~~~~~~~~~----~--~~~~~-~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~-  601 (1045)
                      .+.....+.+..    +  .+... ........++|++|++|+++|||++.|+|||++|||+++||++|++.......+ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~  158 (416)
T PLN02528         79 HLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSS  158 (416)
T ss_pred             cccccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccc
Confidence            110000000000    0  00000 001113578999999999999999999999999999999999997532110000 


Q ss_pred             CccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceee
Q psy6394         602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVI  681 (1045)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  681 (1045)
                      +.+++ ..                        +.                     .+..+... ..+.   ......+.+
T Consensus       159 ~~~~~-~~------------------------~~---------------------~~~~~~~~-~~~~---~~~~~~~~~  188 (416)
T PLN02528        159 SAEEA-TI------------------------AE---------------------QEEFSTSV-STPT---EQSYEDKTI  188 (416)
T ss_pred             ccccc-cC------------------------Cc---------------------cccccccC-CCcc---cccCcceee
Confidence            00000 00                        00                     00000000 0000   001124568


Q ss_pred             ecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCC
Q psy6394         682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQ  761 (1045)
Q Consensus       682 pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~  761 (1045)
                      ||+++||.||++|.+|+++||+|++.++|+++|+++|+++++.....| .|+|+++||+||+++||++||.||++|++++
T Consensus       189 ~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~~g-~kls~~~~likA~a~aL~~~P~~Na~~~~~~  267 (416)
T PLN02528        189 PLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTDPT-VKHTFLPFLIKSLSMALSKYPLLNSCFNEET  267 (416)
T ss_pred             ccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhhcC-CcccHHHHHHHHHHHHHHhCchhhEEEecCC
Confidence            999999999999999999999999999999999999999997544445 9999999999999999999999999998766


Q ss_pred             ceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccc
Q psy6394         762 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII  841 (1045)
Q Consensus       762 ~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii  841 (1045)
                      +.+++++++||||||++++||+|||||++|.+++.+|+++++++.+++|+|+|+++||+||||||||+|+||+.+|+|||
T Consensus       268 ~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIi  347 (416)
T PLN02528        268 SEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVL  347 (416)
T ss_pred             ceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       842 ~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      ||||+||||+|+++++|++..+|++++|++|+++|+||||||||+++|+||+.++++   ||+|..++
T Consensus       348 n~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~---le~P~~ll  412 (416)
T PLN02528        348 NLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSY---VEKPELLM  412 (416)
T ss_pred             cCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHH---HhCHHHHH
Confidence            999999999999999999966789999999999999999999999999999999999   99998764

>KOG0558|consensus

Probab=100.00  E-value=3.8e-78  Score=640.89  Aligned_cols=407  Identities=43%  Similarity=0.730  Sum_probs=355.8

Q ss_pred             cceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         444 RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       444 ~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      ......|++.|+||++.|+++.+|+  ||+||+|++.|+||||++|||+++|.+.++|+|.+|+.+.+|...||++|..+
T Consensus        61 ~~gvv~f~LsdiGEGI~Ev~vkeWf--VKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~  138 (474)
T KOG0558|consen   61 NSGVVQFKLSDIGEGIAEVTVKEWF--VKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDL  138 (474)
T ss_pred             ccceEEEEhhhccccceeeeeeeeh--hhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeee
Confidence            4458999999999999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             eecCccccccccccccccCCC--CCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCC
Q psy6394         524 EVEDEGVAAEEADSLDRKAAP--GVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNP  601 (1045)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~  601 (1045)
                      +.++.....+...+.|+.+..  ..++.+..+.+++|++||||.|+||||+.|+|||++|||+|+||++|+.+.......
T Consensus       139 eve~~~ds~e~s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~  218 (474)
T KOG0558|consen  139 EVEDSQDSPEDSDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTD  218 (474)
T ss_pred             eeccCcCCcccCCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccC
Confidence            987655433332222222111  122334456789999999999999999999999999999999999999765332221


Q ss_pred             CccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCccc-ccCCccee
Q psy6394         602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTA-HVREASNV  680 (1045)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~  680 (1045)
                      +.+..                                                 .+..+.++    |...+ ..-...+.
T Consensus       219 ~~~~~-------------------------------------------------~a~~~~~~----ps~~a~~~~~~Dkt  245 (474)
T KOG0558|consen  219 PSPSE-------------------------------------------------HAVIPGPS----PSTKASSNLEADKT  245 (474)
T ss_pred             CCCce-------------------------------------------------eecCCCCC----CcccccCcccccce
Confidence            11110                                                 00000011    10000 11124678


Q ss_pred             eecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCC
Q psy6394         681 IPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPT  760 (1045)
Q Consensus       681 ~pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~  760 (1045)
                      +|+.+.+|+|.+.|+++..||||.+.+|||++.|+++|++++....+++ +|+|||+|++||++.||.++|.+|+.+|.+
T Consensus       246 ~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLvklr~elk~~a~e~~-IKltfmPf~iKaaSlaL~kyP~vNss~d~~  324 (474)
T KOG0558|consen  246 VPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLVKLRQELKENAKERG-IKLTFMPFFIKAASLALLKYPIVNSSFDEE  324 (474)
T ss_pred             eechhHHHHHHHHHHHHhcCCccccccccChHHHHHHHHHHhhhhhhcC-ceeeehHHHHHHHHHHHhhCccccchhhhh
Confidence            9999999999999999999999999999999999999999999888888 999999999999999999999999999988


Q ss_pred             CceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccc
Q psy6394         761 QENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPI  840 (1045)
Q Consensus       761 ~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpi  840 (1045)
                      ...|+++.++|||+|++|+.||+||+|+|++.+++.||+++|++|.++.+.|+|+++|+.|||||+||+|.+|+++..|+
T Consensus       325 ~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~  404 (474)
T KOG0558|consen  325 SENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPV  404 (474)
T ss_pred             hhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         841 IVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       841 i~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |++||+||.|+|+|++.|.||..|++.+..+|+++|+.|||||||+.+|||.+.||.|   +|||..++
T Consensus       405 i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~Y---lE~Pa~ml  470 (474)
T KOG0558|consen  405 IMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEY---LENPALML  470 (474)
T ss_pred             cccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHH---hhCHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999   99998764

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.5e-76  Score=681.88  Aligned_cols=395  Identities=33%  Similarity=0.512  Sum_probs=341.5

Q ss_pred             eeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       446 ~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      +.++|+||+|||+|+||+|++|+  ||+||.|++||+|++|||||+++||+||++|+|.+|++++||.|++|++|++|+.
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~--~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~   78 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWL--KKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE   78 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEe--cCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence            35789999999999999999999  9999999999999999999999999999999999999999999999999999998


Q ss_pred             cCccc-cccccccccccCCCC-----CCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCC
Q psy6394         526 EDEGV-AAEEADSLDRKAAPG-----VSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDET  599 (1045)
Q Consensus       526 ~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~  599 (1045)
                      +++.. +.++..+.+..+.+.     ..........++|++|++|+|+|||+.++.|||++|||+++|++.++...... 
T Consensus        79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~-  157 (404)
T COG0508          79 EGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAA-  157 (404)
T ss_pred             CCCcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhccccccc-
Confidence            76542 111110111111111     01111155789999999999999999999999999999999999987654110 


Q ss_pred             CCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcce
Q psy6394         600 NPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASN  679 (1045)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  679 (1045)
                      . +.+..                                                      ..   +.+.   ......+
T Consensus       158 ~-~~~~~------------------------------------------------------~~---~~~~---~~~~~~~  176 (404)
T COG0508         158 A-AAPAP------------------------------------------------------AA---AAPA---SAAGEEE  176 (404)
T ss_pred             c-ccccc------------------------------------------------------cc---CCcc---cccCCce
Confidence            0 00000                                                      00   0000   1234678


Q ss_pred             eeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEc
Q psy6394         680 VIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASID  758 (1045)
Q Consensus       680 ~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~  758 (1045)
                      ++||+++||.|+++|.+| .++||+|.+.++|++.++++|++++..+.+.+ .|+|+++|++||++.||++||.+|++++
T Consensus       177 ~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~g-~klt~~~f~~kA~~~Alk~~P~~Na~~~  255 (404)
T COG0508         177 RVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKKG-VKLTFLSFLVKAVVKALKKFPEVNASID  255 (404)
T ss_pred             eeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhcccC-ccccHHHHHHHHHHHHHHhCCccceeec
Confidence            899999999999999999 89999999999999999999999998776555 9999999999999999999999999888


Q ss_pred             CCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeec
Q psy6394         759 PTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQ  838 (1045)
Q Consensus       759 ~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~t  838 (1045)
                      ++...+++++++|||+||++++||++||||++|++++.+|++++.+|..++|+|||+++||+||||||||+|+||..+|+
T Consensus       256 ~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~t  335 (404)
T COG0508         256 GDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFT  335 (404)
T ss_pred             cccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceec
Confidence            53228999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         839 PIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       839 pii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      ||||+||+||||+|++.++|+++ ++++++|++|+++++||||+|||+++++||..++++   +|+|..++
T Consensus       336 piin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~---le~p~~ll  402 (404)
T COG0508         336 PIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKEL---LEDPERLL  402 (404)
T ss_pred             ccccChhHheeeccccccCceEe-cCceeeEeeEeecccccccccccHHHHHHHHHHHHH---hcChhhhh
Confidence            99999999999999999999995 459999999999999999999999999999999999   99998764

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2.7e-76  Score=686.43  Aligned_cols=394  Identities=27%  Similarity=0.411  Sum_probs=329.9

Q ss_pred             EEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCE-EecCCceEEEeecCc
Q psy6394         450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV-ALVGKPLLDIEVEDE  528 (1045)
Q Consensus       450 i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~-v~vg~~l~~i~~~~~  528 (1045)
                      ++||++|++|+||+|.+|+  |++||.|++||+||+|||||++++|+||.+|+|.++++++|+. +++|++|++|+..++
T Consensus         2 i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~   79 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWL--KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKE   79 (435)
T ss_pred             cccCCCCCCcceEEEEEEE--eCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCC
Confidence            6799999999999999999  9999999999999999999999999999999999999999999 999999999965332


Q ss_pred             ccc-c-----------cccc-----cccc---cC--CC--CC-CC----C-----CCCCCCCCccccccCCCCCCCcCcc
Q psy6394         529 GVA-A-----------EEAD-----SLDR---KA--AP--GV-SE----V-----NTPDTSDQPNETLHKDPNKIDTKEL  574 (1045)
Q Consensus       529 ~~~-~-----------~~~~-----~~~~---~~--~~--~~-~~----~-----~~~~~~asP~vr~la~e~gidls~v  574 (1045)
                      ..+ .           ++..     +.+.   .+  .+  .. .+    .     ....++++|++|++|+|+||||+.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v  159 (435)
T TIGR01349        80 DVADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAV  159 (435)
T ss_pred             ccccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHC
Confidence            211 0           0000     0000   00  00  00 00    0     0113568999999999999999999


Q ss_pred             ccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchh
Q psy6394         575 RGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKED  654 (1045)
Q Consensus       575 ~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~  654 (1045)
                      +|||++|||+++||++|+..... .+ +.+++..                                              
T Consensus       160 ~gtG~~GrI~~~DV~~~~~~~~~-~~-~~~~~~~----------------------------------------------  191 (435)
T TIGR01349       160 AGSGPNGRIVKKDIESFVPQSPA-SA-NFQAAAT----------------------------------------------  191 (435)
T ss_pred             CCCCCCCceeHHHHHHHHhcccc-cC-CCccccc----------------------------------------------
Confidence            99999999999999999753110 00 0000000                                              


Q ss_pred             hhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCccc
Q psy6394         655 IITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKL  733 (1045)
Q Consensus       655 ~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~kl  733 (1045)
                        .+ ..... ..+.    .....+.+||++|||.|+++|.+| +++||+|++.++|+++|+++|+++++...+ + .|+
T Consensus       192 --~~-~~~~~-~~~~----~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~-~-~kl  261 (435)
T TIGR01349       192 --TP-ATKKA-AAPV----STGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKELNAMASE-V-YKL  261 (435)
T ss_pred             --cc-ccccc-CCCc----cCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEhHHHHHHHHHHHhhhhc-C-Ccc
Confidence              00 00000 0000    011245689999999999999999 899999999999999999999999976544 5 899


Q ss_pred             ChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCC
Q psy6394         734 TYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGK  813 (1045)
Q Consensus       734 T~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k  813 (1045)
                      |+++||+||+++||++||.||++|++  ++|++++++||||||++++||+||||||+|++++.+|+++++++.+++|+|+
T Consensus       262 t~~~~l~kA~a~AL~~~P~~Na~~~~--~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~  339 (435)
T TIGR01349       262 SVNDFIIKASALALREVPEANSSWTD--NFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNK  339 (435)
T ss_pred             cHHHHHHHHHHHHHHhCcHhheEEeC--CeEEEeCCeeEEEEEECCCCeEECCCCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999985  6799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCc---eeEEEeeeEEEeccceeecchhhhh
Q psy6394         814 VLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMR---IVAKCILNVTWAADHRVVDGATVAR  890 (1045)
Q Consensus       814 l~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~---i~~~~~m~lslt~DhRviDGa~aa~  890 (1045)
                      |+++||+||||||||+|+||+.+|+|||||||+||||+|++.++|+++ +|+   +++|++|+++|+||||||||+++|+
T Consensus       340 L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~i~~~~~m~lsls~DHRviDGa~aa~  418 (435)
T TIGR01349       340 LKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKGFAVASIMSVTLSCDHRVIDGAVGAE  418 (435)
T ss_pred             CChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCccceeEEeeeEEEeEeecchhhCcHHHHH
Confidence            999999999999999999999999999999999999999999999984 455   9999999999999999999999999


Q ss_pred             hhhhhhhcccccccCCcce
Q psy6394         891 AATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       891 fl~~~~~~~~ile~p~v~I  909 (1045)
                      ||+.|+++   ||+|..++
T Consensus       419 Fl~~lk~~---lE~p~~ll  434 (435)
T TIGR01349       419 FLKSFKKY---LENPIEML  434 (435)
T ss_pred             HHHHHHHH---HhCHHhhh
Confidence            99999999   99998653

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>KOG0557|consensus

Probab=100.00  E-value=7.4e-77  Score=661.63  Aligned_cols=402  Identities=27%  Similarity=0.393  Sum_probs=337.1

Q ss_pred             cceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC-CEEecCCceEE
Q psy6394         444 RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG-DVALVGKPLLD  522 (1045)
Q Consensus       444 ~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G-~~v~vg~~l~~  522 (1045)
                      .+...+|.||.|+.+|+||.|++|.  +++||.+++||+||||||||++|+++++++|+|.||+++|| ..|+||.+|++
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~--kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iai  112 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWK--KKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAI  112 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEe--eccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEE
Confidence            5778999999999999999999999  99999999999999999999999999999999999999999 78999999999


Q ss_pred             EeecCccccccc--c-----c-------cccccC------CCCC-------CCCC---CCCCCCCccccccCCCCCCCcC
Q psy6394         523 IEVEDEGVAAEE--A-----D-------SLDRKA------APGV-------SEVN---TPDTSDQPNETLHKDPNKIDTK  572 (1045)
Q Consensus       523 i~~~~~~~~~~~--~-----~-------~~~~~~------~~~~-------~~~~---~~~~~asP~vr~la~e~gidls  572 (1045)
                      |.+.+++.++..  .     .       ++++.+      ++.+       ++..   ..++.++|.+|+||.++|+|++
T Consensus       113 ive~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls  192 (470)
T KOG0557|consen  113 IVEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELS  192 (470)
T ss_pred             EecccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccc
Confidence            977655533210  0     0       000000      0100       1111   2367899999999999999999


Q ss_pred             ccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccc
Q psy6394         573 ELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKK  652 (1045)
Q Consensus       573 ~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~  652 (1045)
                      .++||||+|||+|.||++|+.....+.+. .+.++                                             
T Consensus       193 ~i~gtGP~Gri~k~Di~~~v~~~~~k~~~-~~~~~---------------------------------------------  226 (470)
T KOG0557|consen  193 SIPGTGPHGRILKGDIEKHVGSGKKKSAK-APKAS---------------------------------------------  226 (470)
T ss_pred             cCcCcCCCceeehhhHHHhhccccccccc-CCCcc---------------------------------------------
Confidence            99999999999999999998764432211 11000                                             


Q ss_pred             hhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCc
Q psy6394         653 EDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRL  731 (1045)
Q Consensus       653 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~  731 (1045)
                            .++    .++++.....+.++.+|++.||+.|+++|.+| ++|||+|+..+++++.|+.+|+.++  +++.+ .
T Consensus       227 ------~~~----~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~~~~~-~  293 (470)
T KOG0557|consen  227 ------APP----PAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDVNLDKLLALREKLN--FEKSI-K  293 (470)
T ss_pred             ------CCC----cCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeeeehHHHHHHHHHhh--hcccC-c
Confidence                  000    00100111123478999999999999999999 9999999999999999999999999  34445 8


Q ss_pred             ccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhcccc
Q psy6394         732 KLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHE  811 (1045)
Q Consensus       732 klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~  811 (1045)
                      ++++++|++||++.||+++|+.|++|.++ +.                                                
T Consensus       294 ~vsvndliiKAaa~al~~vPevNs~w~~~-~~------------------------------------------------  324 (470)
T KOG0557|consen  294 KVSLNDLIAKAAALALAKVPEVNSSWMDE-LV------------------------------------------------  324 (470)
T ss_pred             ccchhHHHHHHHHHHHhcCCcccceecCC-cc------------------------------------------------
Confidence            99999999999999999999999999852 10                                                


Q ss_pred             CCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhh
Q psy6394         812 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA  891 (1045)
Q Consensus       812 ~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~f  891 (1045)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (470)
T KOG0557|consen  325 --------------------------------------------------------------------------------  324 (470)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCC
Q psy6394         892 ATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG  971 (1045)
Q Consensus       892 l~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~  971 (1045)
                               |.++..+++.+||+|++|||+|+|+|++.++|.+|++++++|+.+||+|+|.|+||+|||||||||||||+
T Consensus       325 ---------i~~~~~VdisvAVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V  395 (470)
T KOG0557|consen  325 ---------IRQLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGV  395 (470)
T ss_pred             ---------ccccCcCChhheeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCc
Confidence                     13345688899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeecCCceeEEEecceeEEeEE--ecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         972 TLVQPIIVPRQVCIVAFGKIQLLPRF--DAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       972 ~~~~~iin~pq~ail~vG~i~~~pv~--~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      +.|++||||||+|||++|+..+..|.  +..+++....+|++|||+|||+|||+.|++||..||++||||..||+
T Consensus       396 ~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll  470 (470)
T KOG0557|consen  396 DMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL  470 (470)
T ss_pred             cccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence            99999999999999999999987773  44457889999999999999999999999999999999999999985

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=1.8e-74  Score=663.35  Aligned_cols=370  Identities=25%  Similarity=0.423  Sum_probs=295.2

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ++|+||+||++|+||+|++|+  |++||.|++||+||+|||||+.+||+||++|+|.+|++++||.|++|++|++|+..+
T Consensus        92 ~~i~mP~lg~~~~eG~I~~w~--v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~  169 (463)
T PLN02226         92 VEAVVPHMGESITDGTLATFL--KKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSE  169 (463)
T ss_pred             eEEecCCCCCCcceEEEEEEE--eCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCC
Confidence            799999999999999999999  999999999999999999999999999999999999999999999999999997543


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccc
Q psy6394         528 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHV  607 (1045)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~  607 (1045)
                      +.. +++... +  ..+. .+.+.+   ..+..|++  +++++++.+.-   +           ... ..  .+..+ + 
T Consensus       170 ~~~-~~~~~~-~--~~~~-~~~~~~---~~~~~~~~--~~~v~asp~~r---~-----------~~~-~~--~~~~~-~-  220 (463)
T PLN02226        170 DAA-SQVTPS-Q--KIPE-TTDPKP---SPPAEDKQ--KPKVESAPVAE---K-----------PKA-PS--SPPPP-K-  220 (463)
T ss_pred             ccc-cccCcc-C--CCCC-CCCCCC---CCcccccc--ccCCCcchhhc---c-----------ccC-CC--CCCCC-c-
Confidence            211 100000 0  0000 000000   00111111  33333333210   0           000 00  00000 0 


Q ss_pred             cccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchh
Q psy6394         608 REASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYV  687 (1045)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~r  687 (1045)
                                                                           .+.  ..+.. . .....+.+||++||
T Consensus       221 -----------------------------------------------------~~~--~~~~~-~-~~~~~~~ipls~~R  243 (463)
T PLN02226        221 -----------------------------------------------------QSA--KEPQL-P-PKERERRVPMTRLR  243 (463)
T ss_pred             -----------------------------------------------------ccc--cCccc-c-cCCCceeeeChHHH
Confidence                                                                 000  00000 0 00113568999999


Q ss_pred             hHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEE
Q psy6394         688 KGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILV  766 (1045)
Q Consensus       688 k~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~  766 (1045)
                      |.||++|.+| +++||+|++.|+|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.+|++|++  +.|  
T Consensus       244 k~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~--~~i--  319 (463)
T PLN02226        244 KRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDG--DDI--  319 (463)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcC--CEE--
Confidence            9999999999 89999999999999999999999998766553389999999999999999999999999973  111  


Q ss_pred             cCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccce
Q psy6394         767 NPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV  846 (1045)
Q Consensus       767 ~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~  846 (1045)
                                                                                                      
T Consensus       320 --------------------------------------------------------------------------------  319 (463)
T PLN02226        320 --------------------------------------------------------------------------------  319 (463)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecc
Q psy6394         847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKS  926 (1045)
Q Consensus       847 ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~  926 (1045)
                                                                             +.++++||||||++++||+||||||
T Consensus       320 -------------------------------------------------------~~~~~vnIGvAV~t~~GLvVPVIr~  344 (463)
T PLN02226        320 -------------------------------------------------------IYRDYVDISIAVGTSKGLVVPVIRG  344 (463)
T ss_pred             -------------------------------------------------------EEeCcccEEEEEECCCCEEeccCCC
Confidence                                                                   2334588999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEE
Q psy6394         927 VNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAK 1006 (1045)
Q Consensus       927 a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~ 1006 (1045)
                      ||+|+|.||++++++|++++|+|+|+++||+||||||||+||||+++|+|||||||+||||+|+++++||+.+| ++++|
T Consensus       345 ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g-~i~~r  423 (463)
T PLN02226        345 ADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG-SVVPR  423 (463)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECC-EEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875 89999


Q ss_pred             EEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394        1007 CILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus      1007 ~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ++|+||||||||+|||++||+||++|+++||||..||++
T Consensus       424 ~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~  462 (463)
T PLN02226        424 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLD  462 (463)
T ss_pred             eEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhc
Confidence            999999999999999999999999999999999998864

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=3.1e-74  Score=658.29  Aligned_cols=405  Identities=26%  Similarity=0.421  Sum_probs=318.1

Q ss_pred             EecceeeecccccccccCCCCCCCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEE
Q psy6394         407 SIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEV  486 (1045)
Q Consensus       407 ~l~g~r~~m~k~Mt~S~~~~~s~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~v  486 (1045)
                      ||-...|.||++++--+        .++.-+.|+|..-...++|+||+||++|+||+|++|+  |++||.|++||+|++|
T Consensus        12 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~i~~P~lg~~~~eg~I~~w~--v~~Gd~V~~Gd~L~~v   81 (418)
T PTZ00144         12 PLLSSVKGMFRRFSLRK--------LQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWK--KKVGDYVKEDEVICII   81 (418)
T ss_pred             cccccchhHHHHHhhhc--------cchhhhhhcccccccceEEecCCCCCCcceEEEEEEE--eCCCCEeCCCCEEEEE
Confidence            34445677887766533        1122234555555567899999999999999999999  9999999999999999


Q ss_pred             eccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCccccccccccccccCCCCCCCCCCCCCCCCccccccCCC
Q psy6394         487 ESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDP  566 (1045)
Q Consensus       487 etdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e  566 (1045)
                      ||||++++|+||.+|+|.++++++|+.|++|++|++|+..++... ++..++ ....+... .+.......|.+++++++
T Consensus        82 EtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~p~~~~~a~~  158 (418)
T PTZ00144         82 ETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPA-AAPAAA-AAAKAEKT-TPEKPKAAAPTPEPPAAS  158 (418)
T ss_pred             EEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCcccc-cccccc-CCCCCccC-CCCCCCCCCCcccccccc
Confidence            999999999999999999999999999999999999975443211 100000 00000000 000000123556665555


Q ss_pred             CCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccc
Q psy6394         567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQ  646 (1045)
Q Consensus       567 ~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~  646 (1045)
                      +++++..+..                  ....+.  ++                                          
T Consensus       159 ~~~a~p~vr~------------------~~~~~~--~~------------------------------------------  176 (418)
T PTZ00144        159 KPTPPAAAKP------------------PEPAPA--AK------------------------------------------  176 (418)
T ss_pred             ccCCchhhhc------------------cccCCC--CC------------------------------------------
Confidence            5554444410                  000000  00                                          


Q ss_pred             cccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHH
Q psy6394         647 LRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALY  725 (1045)
Q Consensus       647 ~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~  725 (1045)
                                   ..+    .+...  .....+.+||++|||.||++|.+| +++||+|++.|+|+++|+++|+++++.+
T Consensus       177 -------------~~~----~~~~~--~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~  237 (418)
T PTZ00144        177 -------------PPP----TPVAR--ADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDF  237 (418)
T ss_pred             -------------CCC----CCccc--cCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhh
Confidence                         000    00000  000134579999999999999999 8999999999999999999999999766


Q ss_pred             HhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHH
Q psy6394         726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRI  805 (1045)
Q Consensus       726 ~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l  805 (1045)
                      .+..+.|+|+++||+||+++||++||.+|++|++  +++                                         
T Consensus       238 ~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~--~~i-----------------------------------------  274 (418)
T PTZ00144        238 QKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDG--DEI-----------------------------------------  274 (418)
T ss_pred             hhhcCCcccHHHHHHHHHHHHHHhChHhheEEcC--CEE-----------------------------------------
Confidence            6553389999999999999999999999999973  111                                         


Q ss_pred             HhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecc
Q psy6394         806 QGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDG  885 (1045)
Q Consensus       806 ~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDG  885 (1045)
                                                                                                      
T Consensus       275 --------------------------------------------------------------------------------  274 (418)
T PTZ00144        275 --------------------------------------------------------------------------------  274 (418)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeec
Q psy6394         886 ATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSN  965 (1045)
Q Consensus       886 a~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSN  965 (1045)
                                      +.++++||||||++++||+||||||||+|+|.+|++++++|++++|+|+|+++||+||||||||
T Consensus       275 ----------------~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISN  338 (418)
T PTZ00144        275 ----------------VYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISN  338 (418)
T ss_pred             ----------------EEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEEC
Confidence                            2234578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         966 VGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       966 lG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      +||+|+++|+|||||||+||||+|+++++||+.+| ++++|++|+||||||||+|||++||+||++|+++||||+.||++
T Consensus       339 lG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g-~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~  417 (418)
T PTZ00144        339 GGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN-EIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLD  417 (418)
T ss_pred             CCCCCcceeeeeecCCceEEEecccceeEeEEECC-EEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhc
Confidence            99999999999999999999999999999999876 89999999999999999999999999999999999999998864

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=2.4e-69  Score=609.58  Aligned_cols=295  Identities=24%  Similarity=0.349  Sum_probs=256.2

Q ss_pred             CCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCC
Q psy6394         556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPS  635 (1045)
Q Consensus       556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  635 (1045)
                      +||++|++|+|+||||+.|+|||++|||+++||++|+......+.+.++++                           + 
T Consensus        51 asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~---------------------------~-  102 (347)
T PRK14843         51 ISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQ---------------------------I-  102 (347)
T ss_pred             CCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCC---------------------------C-
Confidence            599999999999999999999999999999999999743211000000000                           0 


Q ss_pred             ccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHH
Q psy6394         636 LRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQL  714 (1045)
Q Consensus       636 ~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l  714 (1045)
                                           .  ....   .|...+ ..+..+.+||+++||.||++|.+| +++||+|++.|+|+++|
T Consensus       103 ---------------------~--~~~~---~~~~~~-~~~~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l  155 (347)
T PRK14843        103 ---------------------E--KVEE---VPDNVT-PYGEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEM  155 (347)
T ss_pred             ---------------------c--cccC---CCcccc-cCCcceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHH
Confidence                                 0  0000   000000 012245689999999999999999 89999999999999999


Q ss_pred             HHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeeccccccc
Q psy6394         715 RDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLC  794 (1045)
Q Consensus       715 ~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~s  794 (1045)
                      +++|+++++.+.+..+.|+|+++||+||++.||++||.||++|+++++.+++++++||||||++++||+||||||+|+++
T Consensus       156 ~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~s  235 (347)
T PRK14843        156 LALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMS  235 (347)
T ss_pred             HHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCC
Confidence            99999998765544338999999999999999999999999998766789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeE
Q psy6394         795 LLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNV  874 (1045)
Q Consensus       795 l~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~l  874 (1045)
                      +.+|++++++|.+++|+|+|+++||+||||||||+|+||+++|+|||||||+||||+|+++++|+++ +|++++|++|++
T Consensus       236 l~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~l  314 (347)
T PRK14843        236 LSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVV-NGEIVIRPIMSL  314 (347)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceeccccCCceEEEecCCcceeeEEE-CCeEEEEeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999995 789999999999


Q ss_pred             EEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         875 TWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       875 slt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      +|+||||||||+++|+||+.++++   +|+|..++
T Consensus       315 sls~DHRviDGa~aa~Fl~~lk~~---lE~p~~ll  346 (347)
T PRK14843        315 GLTIDHRVVDGMAGAKFMKDLKEL---IETPISML  346 (347)
T ss_pred             EEecchhhhCcHHHHHHHHHHHHH---hcCHHHhh
Confidence            999999999999999999999999   99998653

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=8.1e-67  Score=608.51  Aligned_cols=389  Identities=35%  Similarity=0.532  Sum_probs=330.1

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ..+++||++|++|++|+|.+|+  |++||.|++||+|++|||||+.++++||.+|+|.++++++|+.|.+|++|++|...
T Consensus         2 ~~~~~~P~lg~~~~~g~i~~w~--v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~   79 (411)
T PRK11856          2 MFEFKMPDLGEGMTEGEIVEWL--VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE   79 (411)
T ss_pred             CeeEecCCCCCCCceEEEEEEE--eCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence            3589999999999999999999  99999999999999999999999999999999999999999999999999999865


Q ss_pred             Cc-cccccc--cc--c--cccc-CCC--C-CCC------CCC-CCCCCCccccccCCCCCCCcCccccCCCCCccchHhH
Q psy6394         527 DE-GVAAEE--AD--S--LDRK-AAP--G-VSE------VNT-PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDI  588 (1045)
Q Consensus       527 ~~-~~~~~~--~~--~--~~~~-~~~--~-~~~------~~~-~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV  588 (1045)
                      ++ ..+..+  ..  +  .+.. ..+  . ..+      ... ....++|++|++|+++||||+.|+|||++|||+++||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv  159 (411)
T PRK11856         80 GEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDV  159 (411)
T ss_pred             CCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHH
Confidence            43 211110  00  0  0000 000  0 000      001 1236899999999999999999999999999999999


Q ss_pred             HhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCC
Q psy6394         589 ITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNP  668 (1045)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p  668 (1045)
                      ++|+........  .+++                           +                          +.+   .+
T Consensus       160 ~~~~~~~~~~~~--~~~~---------------------------~--------------------------~~~---~~  181 (411)
T PRK11856        160 EAAAAAAAPAAA--AAAA---------------------------A--------------------------AAA---PP  181 (411)
T ss_pred             HHHHhcccccCC--CCCC---------------------------C--------------------------CCC---CC
Confidence            999753211000  0000                           0                          000   00


Q ss_pred             CcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHH
Q psy6394         669 AHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCM  747 (1045)
Q Consensus       669 ~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL  747 (1045)
                      .   ......+.+||+++||.||++|.+| .++||++++.++|+++|+++|+++++    .+ .++|+++|++||+++||
T Consensus       182 ~---~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~----~~-~~ls~~~~~ikav~~Al  253 (411)
T PRK11856        182 A---AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKA----IG-VKLTVTDFLIKAVALAL  253 (411)
T ss_pred             c---ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHh----hc-cCccHHHHHHHHHHHHH
Confidence            0   0011246789999999999999999 89999999999999999999999874    23 79999999999999999


Q ss_pred             HhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEee
Q psy6394         748 TEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMS  827 (1045)
Q Consensus       748 ~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftIS  827 (1045)
                      ++||.||++|++  +++++++++|||+||++++||++|||++++.+++.+|+++++++++++|+|+|+.+|++|||||||
T Consensus       254 ~~~P~~n~~~~~--~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiS  331 (411)
T PRK11856        254 KKFPELNASWDD--DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTIS  331 (411)
T ss_pred             HhCcHhheEEeC--CEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEe
Confidence            999999999985  569999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCc
Q psy6394         828 NVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDH  907 (1045)
Q Consensus       828 NlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v  907 (1045)
                      |+|+||..+++|+|||||+|||++|++.++|++. +|+++++++|+++|++|||++||+++++||+.++++   +++|..
T Consensus       332 n~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~---le~p~~  407 (411)
T PRK11856        332 NLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKEL---LENPAL  407 (411)
T ss_pred             CCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHH---HhCHHH
Confidence            9999999999999999999999999999999985 799999999999999999999999999999999999   999987


Q ss_pred             ce
Q psy6394         908 NI  909 (1045)
Q Consensus       908 ~I  909 (1045)
                      ++
T Consensus       408 ll  409 (411)
T PRK11856        408 LL  409 (411)
T ss_pred             Hh
Confidence            64

>KOG0559|consensus

Probab=100.00  E-value=1.9e-67  Score=562.65  Aligned_cols=381  Identities=25%  Similarity=0.394  Sum_probs=302.8

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ..+++.|.++|+++||.|.+|+  +++||.|++++.|++|||||.+++|+||.+|+|.++++++||.|..|+.|+.|...
T Consensus        72 ~vtv~vP~faESiteG~l~~~l--K~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWL--KKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             eeEEecCCcccccccchHHHHh--hCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence            6789999999999999999999  99999999999999999999999999999999999999999999999999999864


Q ss_pred             CccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCcccc
Q psy6394         527 DEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH  606 (1045)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~  606 (1045)
                      ...+...  ..+|+++++...+.    ..+.|.-   +            ++   .+-++       .......+++|+.
T Consensus       150 aApa~~~--~~apa~~~pk~~~a----~~a~p~~---~------------s~---~~p~~-------~apv~e~p~~p~~  198 (457)
T KOG0559|consen  150 AAPAKGG--ASAPAKAEPKTAPA----AAAPPKP---S------------SK---PPPKE-------AAPVAESPPAPSS  198 (457)
T ss_pred             CCCcccc--ccCCCccCCCCCCC----CCCCCCc---c------------CC---CCccc-------cCCCCCCCCCCCC
Confidence            2221111  11111111100000    0000000   0            00   00000       0000000000000


Q ss_pred             ccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCC-CCcccccCCcceeeecCc
Q psy6394         607 VREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETN-PAHTAHVREASNVIPIRG  685 (1045)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~pls~  685 (1045)
                      .                         .|     ...+  ..    +       ++.+++.. |.....+...+.+++|++
T Consensus       199 ~-------------------------~P-----~~~~--a~----k-------~~v~~~~~~p~~~~~~~R~E~RVkMnR  235 (457)
T KOG0559|consen  199 P-------------------------EP-----VPAS--AK----K-------PSVAQPKPPPSEGATPSRSERRVKMNR  235 (457)
T ss_pred             C-------------------------CC-----CCcc--cc----C-------ccccCCCCCcccccCCCcchhhhhhHH
Confidence            0                         00     0000  00    0       00000000 111111234578899999


Q ss_pred             hhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceE
Q psy6394         686 YVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENI  764 (1045)
Q Consensus       686 ~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i  764 (1045)
                      ||+.||.++.+| .+....|.+.||||++|+++|+++++.+-++.|+|+.||.+|+||++.||++.|.+|+.|++  +.|
T Consensus       236 mR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg--~~i  313 (457)
T KOG0559|consen  236 MRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDG--DDI  313 (457)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecC--Cee
Confidence            999999999999 78899999999999999999999998877766699999999999999999999999999995  689


Q ss_pred             EEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccc
Q psy6394         765 LVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPG  844 (1045)
Q Consensus       765 ~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~p  844 (1045)
                      +|++|+||+|||+|+.||+||||||++.+++.+|.++|+.|..+||+|+|+.+||.||||||||-|.||..+.|||||||
T Consensus       314 VYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpP  393 (457)
T KOG0559|consen  314 VYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPP  393 (457)
T ss_pred             EEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         845 QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       845 q~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |+|||||+.|.++|++ .+|++++||||++.|+||||+|||.+|..||+.+|.+   +|||..++
T Consensus       394 QsAILGmHgI~eRPv~-v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~---VEDP~~ml  454 (457)
T KOG0559|consen  394 QSAILGMHGIKERPVV-VGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEA---VEDPRKML  454 (457)
T ss_pred             hhhhhhccccccccee-eCCEeeeccceEEEeeccccccccHHHHHHHHHHHHH---hhCHHHHh
Confidence            9999999999999998 6899999999999999999999999999999999999   99998765

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=2.8e-64  Score=559.35  Aligned_cols=301  Identities=29%  Similarity=0.469  Sum_probs=258.2

Q ss_pred             CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccC
Q psy6394         554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTI  633 (1045)
Q Consensus       554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (1045)
                      +++||++|++|+|+|||++.|+|||++|||+|+||++|+........+.++.+ .                         
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~-~-------------------------   55 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAAS-V-------------------------   55 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccc-c-------------------------
Confidence            46899999999999999999999999999999999999753211111000000 0                         


Q ss_pred             CCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccch
Q psy6394         634 PSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTT  712 (1045)
Q Consensus       634 p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t  712 (1045)
                      +..                    ......+   .|.+. .+....+.+||+++|+.|+++|.+| +++||+|++.|+|++
T Consensus        56 ~~~--------------------~~~~~~~---~~~~~-~~~~~~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t  111 (306)
T PRK11857         56 SSA--------------------QQAAKTA---APAAA-PPKLEGKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMT  111 (306)
T ss_pred             ccc--------------------ccccccc---CCccc-ccCCCceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEch
Confidence            000                    0000000   00000 0111245679999999999999999 799999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeeccccc
Q psy6394         713 QLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNK  792 (1045)
Q Consensus       713 ~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~  792 (1045)
                      +|+++|+++++.+.+..+.|+|+++||+||+++||++||.+|++|+++++.+++++++||||||++++||+||||+|+|+
T Consensus       112 ~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~  191 (306)
T PRK11857        112 KLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQK  191 (306)
T ss_pred             HHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCc
Confidence            99999999997655543489999999999999999999999999987667899999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEee
Q psy6394         793 LCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCIL  872 (1045)
Q Consensus       793 ~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m  872 (1045)
                      +++.+|++++++|.+++|+|+|+++||+||||||||+|+||+.+++|||||||+||||+|+++++|++ .||++++|++|
T Consensus       192 ~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv-~~g~i~~r~~m  270 (306)
T PRK11857        192 LSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIV-KNGQIVAGKVM  270 (306)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccCCCccceeecccceEEeEE-ECCEEEEeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 57999999999


Q ss_pred             eEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         873 NVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       873 ~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      +++|+||||||||+++|+||+.++++   +|+|..+
T Consensus       271 ~lslt~DHRviDGa~aa~Fl~~lk~~---LE~p~~l  303 (306)
T PRK11857        271 HLTVAADHRWIDGATIGRFASRVKEL---LEKPEIL  303 (306)
T ss_pred             EEeEecchhhhCcHHHHHHHHHHHHH---hcCHHhh
Confidence            99999999999999999999999999   9999864

>KOG0557|consensus

Probab=100.00  E-value=2.7e-59  Score=521.22  Aligned_cols=422  Identities=27%  Similarity=0.399  Sum_probs=289.8

Q ss_pred             ccccccceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCC-CeecCC
Q psy6394         179 HTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG-DVALVG  257 (1045)
Q Consensus       179 ~~s~~~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g-~~v~vG  257 (1045)
                      |.+..+..+..|.||+|+++|+||+|++|+  +||||.+++||+|||||||||+|+++++++|+++||++++| ..|+||
T Consensus        30 ~~a~~~p~h~~i~MPALSPTMeeGnIvsW~--kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVG  107 (470)
T KOG0557|consen   30 HSASKLPAHKTFSMPALSPTMEEGNIVSWK--KKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVG  107 (470)
T ss_pred             cccccCCcceEeecCCCCccccCCceeeEe--eccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCC
Confidence            333337889999999999999999999999  99999999999999999999999999999999999999999 559999


Q ss_pred             CeEEEEEecCcccccccccccc---ccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccC
Q psy6394         258 KPLLDIEVEDEGVAAEEADSLD---RKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLN  334 (1045)
Q Consensus       258 ~~l~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (1045)
                      ++||+|.+++++.++.......   ...++..+    +.+ ++|.....+  .+.    ..+++.             .+
T Consensus       108 k~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~----~~~-app~~~~~~--~Ps----~~~~~~-------------~~  163 (470)
T KOG0557|consen  108 KPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAA----PPP-APPKVAKPE--APS----APSKPS-------------TS  163 (470)
T ss_pred             CceEEEecccccHHHhhccccccccccCCcccC----CCC-CCCcccccC--CCC----CCcccc-------------cc
Confidence            9999998777766544322111   00011000    000 000000000  000    000000             00


Q ss_pred             ccccccccccccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccc----cc-----c--ccc
Q psy6394         335 QPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTA----HV-----R--EAS  403 (1045)
Q Consensus       335 ~~~~~~~~~~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~----~~-----~--~~~  403 (1045)
                      ++.. ...+.|+.++|.+|+||.|+|+|++.|+||||+|||+|+||++|++.....+...+++    .+     .  ..-
T Consensus       164 ~p~~-~~~~~r~~asP~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~  242 (470)
T KOG0557|consen  164 QPVK-AKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGY  242 (470)
T ss_pred             ccCC-cCCCCceecChHHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcc
Confidence            0000 1125689999999999999999999999999999999999999999533322211110    00     0  113


Q ss_pred             eeEEecceeeecccccccccCCCCCCCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeE
Q psy6394         404 NVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVV  483 (1045)
Q Consensus       404 ~~~~l~g~r~~m~k~Mt~S~~~~~s~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l  483 (1045)
                      +.+|+.-+|+.+.|+|.+|+..                          +|.            .+  +      .     
T Consensus       243 ~diP~s~mr~viakrl~eSk~~--------------------------IPh------------~y--v------t-----  271 (470)
T KOG0557|consen  243 EDIPVSNMRRVIAKRLLESKQT--------------------------IPH------------YY--V------T-----  271 (470)
T ss_pred             cccccchhhhhhhhhhhhhhcC--------------------------CCe------------EE--E------e-----
Confidence            4677777777777777776411                          221            11  0      0     


Q ss_pred             eEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCccccccccccccccCCCCCCCCCCCCCCCCcccccc
Q psy6394         484 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLH  563 (1045)
Q Consensus       484 ~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~l  563 (1045)
                      ..++.||                                                                  -.+.|+.
T Consensus       272 ~~~~~d~------------------------------------------------------------------ll~~r~~  285 (470)
T KOG0557|consen  272 VDVNLDK------------------------------------------------------------------LLALREK  285 (470)
T ss_pred             eeeehHH------------------------------------------------------------------HHHHHHH
Confidence            0000000                                                                  0011110


Q ss_pred             CCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCcccccccc
Q psy6394         564 KDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVD  643 (1045)
Q Consensus       564 a~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d  643 (1045)
                      ..        ....  .-+|+-.|+..                                                     
T Consensus       286 ln--------~~~~--~~~vsvndlii-----------------------------------------------------  302 (470)
T KOG0557|consen  286 LN--------FEKS--IKKVSLNDLIA-----------------------------------------------------  302 (470)
T ss_pred             hh--------hccc--CcccchhHHHH-----------------------------------------------------
Confidence            00        0000  01222223221                                                     


Q ss_pred             ccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHH
Q psy6394         644 TTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVS  722 (1045)
Q Consensus       644 ~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~  722 (1045)
                                                                      ++..-. ..+|.+...                
T Consensus       303 ------------------------------------------------KAaa~al~~vPevNs~----------------  318 (470)
T KOG0557|consen  303 ------------------------------------------------KAAALALAKVPEVNSS----------------  318 (470)
T ss_pred             ------------------------------------------------HHHHHHHhcCCcccce----------------
Confidence                                                            111100 111111100                


Q ss_pred             HHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHH
Q psy6394         723 ALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITREL  802 (1045)
Q Consensus       723 ~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l  802 (1045)
                                  +++              .  -.+..       +++|||++||++++||++|+|+|++.+.+.+|.+++
T Consensus       319 ------------w~~--------------~--~~i~~-------~~~VdisvAVat~~GLitPii~na~~kgl~~is~~v  363 (470)
T KOG0557|consen  319 ------------WMD--------------E--LVIRQ-------LSSVDISVAVATPNGLITPIIQNADAKGLSTISSKV  363 (470)
T ss_pred             ------------ecC--------------C--ccccc-------cCcCChhheeeccCcccchhhhhcccccHHHHHHHH
Confidence                        000              0  00000       256899999999999999999999999999999999


Q ss_pred             HHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeE--eccCCceeEEEeeeEEEeccc
Q psy6394         803 LRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR--FDAEMRIVAKCILNVTWAADH  880 (1045)
Q Consensus       803 ~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~--~~~~g~i~~~~~m~lslt~Dh  880 (1045)
                      .+|+.++|.+||.+++++|||||||||||||++.|++||||||.|||++|+.+...+  .|.++++.....|++++++||
T Consensus       364 kel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~Dh  443 (470)
T KOG0557|consen  364 KELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADH  443 (470)
T ss_pred             HHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCc
Confidence            999999999999999999999999999999999999999999999999999888777  466778999999999999999


Q ss_pred             eeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         881 RVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       881 RviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |++||+.+|+||+.|+.+   +|||..++
T Consensus       444 Rvvdga~aa~Fl~~fk~~---~EnP~~~l  469 (470)
T KOG0557|consen  444 RVVDGAVAARFLDEFKEN---LENPEFLL  469 (470)
T ss_pred             ceecHHHHHHHHHHHHHH---hhCHHhhh
Confidence            999999999999999999   99997654

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=1e-54  Score=500.17  Aligned_cols=138  Identities=28%  Similarity=0.440  Sum_probs=133.9

Q ss_pred             CCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccccee
Q psy6394         768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC  847 (1045)
Q Consensus       768 ~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~a  847 (1045)
                      +++||||||++++||+||||||+|++++.+|++++++|.+++|+|+|+++||+||||||||+|+||+++|+|||||||+|
T Consensus       323 ~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvA  402 (463)
T PLN02226        323 DYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSA  402 (463)
T ss_pred             CcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         848 IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       848 ilavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |||+|+++++|++. ||++++|++|+++|+||||||||+++|+||+.++++   ||+|..++
T Consensus       403 ILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~---LE~P~~LL  460 (463)
T PLN02226        403 ILGMHSIVSRPMVV-GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDV---VEDPQRLL  460 (463)
T ss_pred             EEEcccceEEEEEE-CCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHH---hcCHHHHh
Confidence            99999999999984 799999999999999999999999999999999999   99998653

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=5.3e-54  Score=491.86  Aligned_cols=138  Identities=30%  Similarity=0.452  Sum_probs=133.8

Q ss_pred             CCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccccee
Q psy6394         768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC  847 (1045)
Q Consensus       768 ~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~a  847 (1045)
                      +++||||||++++||+||||+++|++++.+|++++++|++++|+|+|+++||+||||||||+|+||+++|||||||||+|
T Consensus       278 ~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~a  357 (418)
T PTZ00144        278 NYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSA  357 (418)
T ss_pred             cCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceE
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         848 IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       848 ilavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |||+|+++++|+++ +|++++|++|+++|+||||||||++||+||+.++++   ||+|..++
T Consensus       358 ILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~---LE~P~~ll  415 (418)
T PTZ00144        358 ILGMHAIKKRPVVV-GNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDL---IEDPARML  415 (418)
T ss_pred             EEecccceeEeEEE-CCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHH---hcCHHHHh
Confidence            99999999999984 789999999999999999999999999999999999   99998654

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=7.6e-54  Score=460.59  Aligned_cols=227  Identities=38%  Similarity=0.586  Sum_probs=202.5

Q ss_pred             cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394         677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA  755 (1045)
Q Consensus       677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa  755 (1045)
                      ..+++|++++||+||++|.+| +++||+|++.++|+++|+++|+++++...+.+ .++|+++|++||+++||++||.||+
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~-~kis~~~~likAva~AL~~~P~lNa   81 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPG-GKISITDFLIKAVALALKEHPELNA   81 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTT-ST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhc-cCCChhHeeeehHhhhhHHHHHhcc
Confidence            468899999999999999999 69999999999999999999999998776666 6999999999999999999999999


Q ss_pred             EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394         756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT  835 (1045)
Q Consensus       756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~  835 (1045)
                      +|++++ +|++++++||||||++++||++|||+|++++++.||+++++++.+++|+|+|+++|++||||||||+|+||++
T Consensus        82 ~~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~  160 (231)
T PF00198_consen   82 SWDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVE  160 (231)
T ss_dssp             EEETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-S
T ss_pred             cccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcc
Confidence            998754 7999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      +|+|||||||+||||+|+++++|++ .+|+++++++|+++|+||||++||+++|+||+.++++   +|+|..++
T Consensus       161 ~~~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~---le~p~~ll  230 (231)
T PF00198_consen  161 SFTPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKEL---LENPERLL  230 (231)
T ss_dssp             CEE----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHH---HHSTHHHC
T ss_pred             eeEccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHH---HhCHHHHh
Confidence            9999999999999999999999999 7899999999999999999999999999999999999   99997653

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=1.1e-51  Score=496.61  Aligned_cols=197  Identities=24%  Similarity=0.382  Sum_probs=166.7

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...|.++++++++........||++.++-                           +.++. ++++.|.        
T Consensus       384 evdvt~l~~~R~~l~~~~~~~~~~kls~~~~i---------------------------iKA~a~AL~~~P~--------  428 (590)
T TIGR02927       384 EVDMTKIAALRARAKAAFAEKEGVNLTFLPFF---------------------------AKAVIDALKAHPN--------  428 (590)
T ss_pred             EEEcHHHHHHHHHHHhhhHHhcCCcccHHHHH---------------------------HHHHHHHHHhCCH--------
Confidence            45566788899888865433333466664432                           23333 3466666        


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                          +|.+|..|-                  ++|+++.++||||||++++||+||||||+|+|||.+|++++++|++|||
T Consensus       429 ----~Na~~~~~~------------------~~i~~~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr  486 (590)
T TIGR02927       429 ----VNASYNADT------------------KEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARAR  486 (590)
T ss_pred             ----hheEEecCC------------------CEEEEeCCccEEEEEECCCCcEecccCCcccCCHHHHHHHHHHHHHHHH
Confidence                567775331                  2458889999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEec---C-ceEEEEEEEEeeecccccccChH
Q psy6394         948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDA---E-MRVVAKCILNVTWAADHRVVDGA 1023 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~---~-~~~~~~~~m~ltls~DHRviDG~ 1023 (1045)
                      +|+|+++||+||||||||+||||+++|+|||||||+||||+|+++++||+.+   | +.+++|++|+||||||||||||+
T Consensus       487 ~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa  566 (590)
T TIGR02927       487 NGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGA  566 (590)
T ss_pred             cCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcH
Confidence            9999999999999999999999999999999999999999999999999852   2 24999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchh
Q psy6394        1024 TVARAATLWKSLVENPALL 1042 (1045)
Q Consensus      1024 ~aa~fl~~~k~~le~P~~l 1042 (1045)
                      +||+||++||++||||..+
T Consensus       567 ~aa~Fl~~lk~~LE~~~~~  585 (590)
T TIGR02927       567 DAGRFLTTIKDRLEEAAFE  585 (590)
T ss_pred             HHHHHHHHHHHHHhCcccc
Confidence            9999999999999999764

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=8e-50  Score=477.24  Aligned_cols=198  Identities=25%  Similarity=0.422  Sum_probs=170.0

Q ss_pred             cccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCce
Q psy6394         788 KSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRI  866 (1045)
Q Consensus       788 r~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i  866 (1045)
                      .++|...+.++++++++..+. +..||++.+                     ++      +.+++ ++++.|.       
T Consensus       348 ~evdvt~l~~~r~~l~~~~~~-~g~kls~~~---------------------~l------~kA~~~AL~~~P~-------  392 (546)
T TIGR01348       348 DKADITEMEAFRKQQNAAVEK-EGVKLTVLH---------------------IL------MKAVAAALKKFPK-------  392 (546)
T ss_pred             EEEEcHHHHHHHHHHHhhhhh-cCCcccHHH---------------------HH------HHHHHHHHHhCCh-------
Confidence            356667888999999875543 234565543                     22      33333 3566666       


Q ss_pred             eEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhh
Q psy6394         867 VAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCS  946 (1045)
Q Consensus       867 ~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a  946 (1045)
                           +|.+|..|.                  +.|+.+.++||||||++++||+||||||+|+|||.+|++++++|++++
T Consensus       393 -----~Na~~~~~~------------------~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a  449 (546)
T TIGR01348       393 -----FNASLDLGG------------------EQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKA  449 (546)
T ss_pred             -----hhEEEeCCC------------------CEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHH
Confidence                 566774321                  234778889999999999999999999999999999999999999999


Q ss_pred             hcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHH
Q psy6394         947 HEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026 (1045)
Q Consensus       947 ~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa 1026 (1045)
                      |+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++|+++++ ++++|++|+||||||||+|||++||
T Consensus       450 r~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~-~~~~~~~m~ltls~DHRviDGa~aa  528 (546)
T TIGR01348       450 RDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-EFEPRLMLPLSLSYDHRVIDGADAA  528 (546)
T ss_pred             hcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECC-EEEEEEEEEEeEeccchhcChHHHH
Confidence            999999999999999999999999999999999999999999999999999765 8999999999999999999999999


Q ss_pred             HHHHHHHHhhcCcchhcc
Q psy6394        1027 RAATLWKSLVENPALLLT 1044 (1045)
Q Consensus      1027 ~fl~~~k~~le~P~~ll~ 1044 (1045)
                      +||++|+++||||..||+
T Consensus       529 ~Fl~~~~~~le~P~~ll~  546 (546)
T TIGR01348       529 RFTTYICESLADIRRLLL  546 (546)
T ss_pred             HHHHHHHHHHhCHHhhhC
Confidence            999999999999999875

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=4.3e-50  Score=453.14  Aligned_cols=198  Identities=24%  Similarity=0.373  Sum_probs=169.2

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...+.++++++++........|+++.++                     +      +.++. ++++.|.        
T Consensus       149 evd~t~l~~~r~~~~~~~~~~~~~kls~~~~---------------------l------ikA~a~AL~~~P~--------  193 (347)
T PRK14843        149 EVDMTEMLALRKKVLEPIMEATGKKTTVTDL---------------------L------SLAVVKTLMKHPY--------  193 (347)
T ss_pred             EEEchHHHHHHHHHHHHHHhhcCCcccHHHH---------------------H------HHHHHHHHHhCcc--------
Confidence            4555678888888875443333346665443                     2      22222 3466666        


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                          ||.+|..|.                  +.|+.++++||||||++++||+||||||||+|||.+|++++++|+++||
T Consensus       194 ----~Na~~~~~~------------------~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar  251 (347)
T PRK14843        194 ----INASLTEDG------------------KTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTL  251 (347)
T ss_pred             ----eeEEEecCC------------------CeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHH
Confidence                577775431                  2347889999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394         948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
                      +|+|+++||+||||||||+||||+++|+|||||||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+
T Consensus       252 ~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g-~i~~r~~m~lsls~DHRviDGa~aa~  330 (347)
T PRK14843        252 DGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNG-EIVIRPIMSLGLTIDHRVVDGMAGAK  330 (347)
T ss_pred             cCCCCHHHhCCCeEEEeCCCCCcccceeccccCCceEEEecCCcceeeEEECC-eEEEEeEEEEEEecchhhhCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999875 89999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhcc
Q psy6394        1028 AATLWKSLVENPALLLT 1044 (1045)
Q Consensus      1028 fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||++||++||+|..||+
T Consensus       331 Fl~~lk~~lE~p~~ll~  347 (347)
T PRK14843        331 FMKDLKELIETPISMLI  347 (347)
T ss_pred             HHHHHHHHhcCHHHhhC
Confidence            99999999999998874

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=3.9e-47  Score=462.21  Aligned_cols=143  Identities=33%  Similarity=0.562  Sum_probs=138.8

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |+.+.++||||||++++||+||||||+++++|.+|++++++|++++|+|+|+++||+||||||||+||+|+++|+|||||
T Consensus       491 i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~p  570 (633)
T PRK11854        491 LTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNA  570 (633)
T ss_pred             EEEecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccC
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+||||+|++.++|+++++ .+.+|++|+||||||||+|||++||+||++|+++||+|.+||+
T Consensus       571 pq~aIlgvG~i~~~p~~~~~-~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~  633 (633)
T PRK11854        571 PEVAILGVSKSAMEPVWNGK-EFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL  633 (633)
T ss_pred             CceEEEEcccceEEEEEECC-EEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence            99999999999999998765 8999999999999999999999999999999999999998875

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=2.4e-45  Score=435.09  Aligned_cols=224  Identities=23%  Similarity=0.347  Sum_probs=211.6

Q ss_pred             cceeeecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceE
Q psy6394         677 ASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNAS  756 (1045)
Q Consensus       677 ~~~~~pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~  756 (1045)
                      ..+..||++++++||++|..|..+|++|...+|+++.|+++|..+|+.+.+..|.|+|||++|+||+++||++||.||++
T Consensus       114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas  193 (1228)
T PRK12270        114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH  193 (1228)
T ss_pred             CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence            34678999999999999999988999999999999999999999999888766699999999999999999999999999


Q ss_pred             EcC--CCceEEEcCCccEEEEEecC-----CCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeecc
Q psy6394         757 IDP--TQENILVNPDHNISIAIDTK-----HGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNV  829 (1045)
Q Consensus       757 ~~~--~~~~i~~~~~vnIgiAV~t~-----~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNl  829 (1045)
                      |++  ..+.++++++|||||||+++     +||+||+||+||+|++.+|.+++.+++.|+|+|||+++||+||||||||+
T Consensus       194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~  273 (1228)
T PRK12270        194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP  273 (1228)
T ss_pred             eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence            984  23459999999999999998     58999999999999999999999999999999999999999999999999


Q ss_pred             CCccceeecccccccceeeEeeccceeEeEecc-----CCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccc
Q psy6394         830 GNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDA-----EMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILV  903 (1045)
Q Consensus       830 G~~G~~~~tpii~~pq~ailavG~i~~~p~~~~-----~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile  903 (1045)
                      |+||..+|+||||+||+||||+|++...|+|+.     .+++.++++|++++|||||||||+++++||+.++++   |+
T Consensus       274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~l---Le  349 (1228)
T PRK12270        274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQL---LL  349 (1228)
T ss_pred             CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHH---Hh
Confidence            999999999999999999999999999999842     468999999999999999999999999999999999   66

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=2.1e-43  Score=424.34  Aligned_cols=143  Identities=41%  Similarity=0.680  Sum_probs=137.9

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |+.+.++|+|+||++++||++|||+|+++++|.+|+++++++++++|+|+|.++|++||||||||+|++|+++|+|||||
T Consensus       405 i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~  484 (547)
T PRK11855        405 LTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINA  484 (547)
T ss_pred             EEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCC
Confidence            47778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+||||+|++.++|++.++ .+.+|.+|+|||+||||+|||+++|+||+.|+++||+|.+||+
T Consensus       485 pq~ail~~G~~~~~pv~~~~-~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~  547 (547)
T PRK11855        485 PEVAILGVGKSQMKPVWDGK-EFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL  547 (547)
T ss_pred             CceEEEEcccceEeeeeeCC-EEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            99999999999999987654 8899999999999999999999999999999999999999875

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.7e-42  Score=385.27  Aligned_cols=198  Identities=28%  Similarity=0.434  Sum_probs=169.1

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...+.++++++++...+....|+++.++                     +      +.++. ++++.|.        
T Consensus       107 evd~t~l~~~r~~~~~~~~~~~g~kls~~~~---------------------l------ikA~a~AL~~~P~--------  151 (306)
T PRK11857        107 EIDMTKLWDLRKSVKDPVLKTEGVKLTFLPF---------------------I------AKAILIALKEFPI--------  151 (306)
T ss_pred             EEEchHHHHHHHHHHHhhhhhcCCCCCHHHH---------------------H------HHHHHHHHHhCcH--------
Confidence            3445578888888886554444446665433                     2      23333 3566676        


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                          +|.+|..+.                  +.|++++++||||||++++||+||||||||+|||.+|++++++|++++|
T Consensus       152 ----~Na~~~~~~------------------~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar  209 (306)
T PRK11857        152 ----FAAKYDEAT------------------SELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAAR  209 (306)
T ss_pred             ----hhEEEeCCC------------------CEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHH
Confidence                466664221                  2358889999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394         948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
                      +|+|+++||+||||||||+||+|+.+|+|||||||+||||+|++.++|++.+| ++++|++|+||||||||+|||++||+
T Consensus       210 ~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g-~i~~r~~m~lslt~DHRviDGa~aa~  288 (306)
T PRK11857        210 ERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNG-QIVAGKVMHLTVAADHRWIDGATIGR  288 (306)
T ss_pred             cCCCChhhcCCccEEEeCCCCCCccceecccCCCccceeecccceEEeEEECC-EEEEeeeeEEeEecchhhhCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999775 89999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhcc
Q psy6394        1028 AATLWKSLVENPALLLT 1044 (1045)
Q Consensus      1028 fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||++||++||+|+.|++
T Consensus       289 Fl~~lk~~LE~p~~l~~  305 (306)
T PRK11857        289 FASRVKELLEKPEILGV  305 (306)
T ss_pred             HHHHHHHHhcCHHhhhc
Confidence            99999999999998764

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=2.3e-42  Score=371.72  Aligned_cols=143  Identities=42%  Similarity=0.641  Sum_probs=126.5

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |+.++++||||||++++||++|||||+++||+.||++++++++++||+|+|+++||+||||||||+||+|+++|+|||||
T Consensus        89 i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~~pii~~  168 (231)
T PF00198_consen   89 IVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESFTPIINP  168 (231)
T ss_dssp             EEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCEE----T
T ss_pred             eeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcceeEccCCc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+||||+|+++++|++.+| ++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus       169 pq~ail~vG~i~~~p~~~~~-~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll  231 (231)
T PF00198_consen  169 PQVAILGVGAIRDRPVVEDG-EVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL  231 (231)
T ss_dssp             TSSEEEEEEEEEEEEEEETT-CEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred             ccceEEEecceEEEEEEEec-cceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999665 8999999999999999999999999999999999999999986

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=1.1e-41  Score=393.34  Aligned_cols=197  Identities=25%  Similarity=0.410  Sum_probs=169.2

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...+.++++++++...+....|+++.++-                           +.++. ++++.|.+       
T Consensus       209 evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l---------------------------ikA~a~AL~~~P~~-------  254 (407)
T PRK05704        209 EVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF---------------------------VKAVVEALKRYPEV-------  254 (407)
T ss_pred             EEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH---------------------------HHHHHHHHHhCcHh-------
Confidence            35556788888888865544334466664432                           23333 35666764       


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                           |.+|..|                    +|+.+.++||||||++++||+||||||||+|||.+|++++++|++|||
T Consensus       255 -----Na~~~~~--------------------~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar  309 (407)
T PRK05704        255 -----NASIDGD--------------------DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKAR  309 (407)
T ss_pred             -----hcEEcCC--------------------eEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHH
Confidence                 5666432                    236778899999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394         948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
                      +|+|+++||+||||||||+||||+.+|+|||||||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+
T Consensus       310 ~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g-~i~~r~~~~lsls~DHRviDGa~aa~  388 (407)
T PRK05704        310 DGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG-QIVIRPMMYLALSYDHRIIDGKEAVG  388 (407)
T ss_pred             cCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECC-EEEEEEEEEEEEEechhhhCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999865 89999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhccC
Q psy6394        1028 AATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus      1028 fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ||++|+++||||..||+.
T Consensus       389 Fl~~l~~~le~p~~ll~~  406 (407)
T PRK05704        389 FLVTIKELLEDPERLLLD  406 (407)
T ss_pred             HHHHHHHHhhCHHHHhhc
Confidence            999999999999998863

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=1.4e-41  Score=391.53  Aligned_cols=197  Identities=25%  Similarity=0.410  Sum_probs=169.0

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...+.++++++++...+...-|+++.++                     +      +.++. ++++.|.+       
T Consensus       205 evd~t~l~~~r~~~~~~~~~~~~~kls~~~~---------------------l------ikA~a~AL~~~P~~-------  250 (403)
T TIGR01347       205 EVDMSAVMELRKRYKEEFEKKHGVKLGFMSF---------------------F------VKAVVAALKRFPEV-------  250 (403)
T ss_pred             EEEHHHHHHHHHHHHhhhHhhcCCCcCHHHH---------------------H------HHHHHHHHHhCcHh-------
Confidence            4555678888888886544333446665443                     2      33443 35677764       


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                           |.+|..|                    +|+.+.++||||||++++||+||||||||+|||.+|++++++|++|+|
T Consensus       251 -----Na~~~~~--------------------~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar  305 (403)
T TIGR01347       251 -----NAEIDGD--------------------DIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKAR  305 (403)
T ss_pred             -----heEEcCC--------------------EEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHH
Confidence                 5555322                    247788999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394         948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
                      +|+|+++||+||||||||+||||+.+|+|||||||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+
T Consensus       306 ~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g-~i~~r~~m~lsLt~DHRviDGa~aa~  384 (403)
T TIGR01347       306 DGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-QIEIRPMMYLALSYDHRLIDGKEAVT  384 (403)
T ss_pred             cCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECC-eEEEEEEEEEEEEecchhhChHHHHH
Confidence            99999999999999999999999999999999999999999999999999875 89999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhccC
Q psy6394        1028 AATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus      1028 fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ||++|+++||||..||+.
T Consensus       385 Fl~~l~~~le~p~~ll~~  402 (403)
T TIGR01347       385 FLVTIKELLEDPRRLLLD  402 (403)
T ss_pred             HHHHHHHHhcCHHHHHhc
Confidence            999999999999998863

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=2.8e-41  Score=391.33  Aligned_cols=145  Identities=51%  Similarity=0.815  Sum_probs=140.3

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |..++++||||||++++||+||||||+|+|||.+|++++++|++++|+|+|+++||+||||||||+||+|+.+|+|||||
T Consensus       270 i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~  349 (416)
T PLN02528        270 IRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNL  349 (416)
T ss_pred             EEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccC
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ||+||||+|++.++|++.+++++.+|++|+||||||||||||++||+||++||++||||.+||++
T Consensus       350 pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~lll~  414 (416)
T PLN02528        350 PEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLMLH  414 (416)
T ss_pred             CceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHHhc
Confidence            99999999999999999754589999999999999999999999999999999999999999874

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=3e-41  Score=396.40  Aligned_cols=197  Identities=29%  Similarity=0.416  Sum_probs=169.1

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...+.++++++++..+..+..||++.++-                           +.++. ++++.|.+       
T Consensus       340 evdvt~L~~lR~~l~~~~~~~~g~kls~~~~l---------------------------iKA~a~AL~~~P~l-------  385 (539)
T PLN02744        340 DTRVDKLMALRSQLNSLQEASGGKKISVNDLV---------------------------IKAAALALRKVPQC-------  385 (539)
T ss_pred             EEEcHHHHHHHHHHHHHhhhcccCccCHHHHH---------------------------HHHHHHHHHhCcHh-------
Confidence            34555789999999877655445577665432                           23333 34666764       


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                           |.+|..|                    .|.+++++||||||++++||+||||||||+|+|.||++++++|+++||
T Consensus       386 -----Na~~~~~--------------------~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr  440 (539)
T PLN02744        386 -----NSSWTDD--------------------YIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKAR  440 (539)
T ss_pred             -----heeeccC--------------------cEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHH
Confidence                 5665322                    247788999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCC-CCCCcceeeeecCCceeEEEecceeEEeEEe-cCceEEEEEEEEeeecccccccChHHH
Q psy6394         948 EGKVLPRDIQGGTISMSNVG-NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD-AEMRVVAKCILNVTWAADHRVVDGATV 1025 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG-~~g~~~~~~iin~pq~ail~vG~i~~~pv~~-~~~~~~~~~~m~ltls~DHRviDG~~a 1025 (1045)
                      +|+|+++||+||||||||+| |||+.+|||||||||+||||+|+++++||+. .++++++|++|+||||||||||||++|
T Consensus       441 ~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~A  520 (539)
T PLN02744        441 ENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIG  520 (539)
T ss_pred             cCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHH
Confidence            99999999999999999997 8999999999999999999999999999984 234899999999999999999999999


Q ss_pred             HHHHHHHHHhhcCcchhcc
Q psy6394        1026 ARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus      1026 a~fl~~~k~~le~P~~ll~ 1044 (1045)
                      |+||++||++||||..||+
T Consensus       521 A~FL~~lk~~LE~P~~lll  539 (539)
T PLN02744        521 AEWLKAFKGYIENPESMLL  539 (539)
T ss_pred             HHHHHHHHHHhcCHHhhhC
Confidence            9999999999999999875

>KOG0559|consensus

Probab=100.00  E-value=3.1e-40  Score=354.04  Aligned_cols=198  Identities=28%  Similarity=0.409  Sum_probs=173.5

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeE
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVA  868 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~  868 (1045)
                      .+|..++.+++++.++..-+-+.-||..               ++     +.+   .+|..+   +++.|++|.      
T Consensus       259 EvDMS~lm~mRk~ykdaf~kKhGvKlGf---------------Ms-----~F~---KA~~~A---lq~qPvVNa------  306 (457)
T KOG0559|consen  259 EVDMSNLMEMRKQYKDAFLKKHGVKLGF---------------MS-----GFS---KAAAYA---LQDQPVVNA------  306 (457)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCceeee---------------hh-----HHH---HHHHHH---hhhCcceee------
Confidence            5677889999999988766555555532               11     111   123333   588898752      


Q ss_pred             EEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhc
Q psy6394         869 KCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHE  948 (1045)
Q Consensus       869 ~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~  948 (1045)
                                   +|||             ++|++...++|+|||+|+.||+||||||++.|++.||.++|..|..|||+
T Consensus       307 -------------vIdg-------------~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~  360 (457)
T KOG0559|consen  307 -------------VIDG-------------DDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARD  360 (457)
T ss_pred             -------------eecC-------------CeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhcc
Confidence                         4666             34577778999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHH
Q psy6394         949 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARA 1028 (1045)
Q Consensus       949 g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~f 1028 (1045)
                      |+|..+||.||||||||-|.||..+.||||||||+||||+.+|.++||+.+| ++++|+||++.||||||+|||-+|--|
T Consensus       361 g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G-~Vv~RPMMYvALTYDHRliDGREAVtF  439 (457)
T KOG0559|consen  361 GKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGG-QVVPRPMMYVALTYDHRLIDGREAVTF  439 (457)
T ss_pred             CceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCC-EeeeccceEEEeeccccccccHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987 999999999999999999999999999


Q ss_pred             HHHHHHhhcCcchhccC
Q psy6394        1029 ATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus      1029 l~~~k~~le~P~~ll~~ 1045 (1045)
                      |+.+|+++|||..||++
T Consensus       440 Lr~iK~~VEDP~~mll~  456 (457)
T KOG0559|consen  440 LRKIKEAVEDPRKMLLD  456 (457)
T ss_pred             HHHHHHHhhCHHHHhhc
Confidence            99999999999999985

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=2.1e-40  Score=385.99  Aligned_cols=144  Identities=32%  Similarity=0.513  Sum_probs=138.5

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |+.++++||||||++++||+||||||||+|||.+|++++++|++++|+|+|+++||+||||||||+||+|+.+|+|||||
T Consensus       290 i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~  369 (435)
T TIGR01349       290 IRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINP  369 (435)
T ss_pred             EEEeCCeeEEEEEECCCCeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCC
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCc--eEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEM--RVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~--~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+||||+|++.++||+.++.  .+++|++|+||||||||+|||++||+||++|+++||||..||+
T Consensus       370 pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll  435 (435)
T TIGR01349       370 PQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL  435 (435)
T ss_pred             CceEEEEcccceEEeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999997652  2999999999999999999999999999999999999999875

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=4.5e-38  Score=362.99  Aligned_cols=144  Identities=38%  Similarity=0.624  Sum_probs=140.3

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |+.+.++|||+||++++||+||||||||+|++.+|++++.+|+.++|+|+|+++||+||||||||+|+||+..|+|||||
T Consensus       261 iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~  340 (404)
T COG0508         261 IVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINP  340 (404)
T ss_pred             EEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccC
Confidence            47778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ||+||||+|++.++||+.++ ++++|+||+|+||||||+|||++|++||.++|++||||..||++
T Consensus       341 Pq~aILgv~~~~~rpv~~~~-~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~~ll~~  404 (404)
T COG0508         341 PQVAILGVGAIEERPVVVGG-EIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPERLLLE  404 (404)
T ss_pred             hhHheeeccccccCceEecC-ceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChhhhhcC
Confidence            99999999999999999887 99999999999999999999999999999999999999999874

>KOG0558|consensus

Probab=100.00  E-value=3e-37  Score=329.10  Aligned_cols=185  Identities=48%  Similarity=0.772  Sum_probs=148.5

Q ss_pred             eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      .++|+|.|+||+|.|++|.+|+  |||||+|+++|.||||++|||+++|+|.|||+|++|+.+.+|.+.||++|..++++
T Consensus        64 vv~f~LsdiGEGI~Ev~vkeWf--VKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve  141 (474)
T KOG0558|consen   64 VVQFKLSDIGEGIAEVTVKEWF--VKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVE  141 (474)
T ss_pred             eEEEEhhhccccceeeeeeeeh--hhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeec
Confidence            7899999999999999999999  99999999999999999999999999999999999999999999999999999987


Q ss_pred             CccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCcccccccccccc
Q psy6394         267 DEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKI  346 (1045)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (1045)
                      +..+..+..+     ++|.+              +.               +.            +.    ....+..+.
T Consensus       142 ~~~ds~e~s~-----es~~v--------------s~---------------~~------------~~----~~~~~~~~t  171 (474)
T KOG0558|consen  142 DSQDSPEDSD-----ESPAV--------------SL---------------GE------------SK----QGEESLLKT  171 (474)
T ss_pred             cCcCCcccCC-----ccccc--------------cC---------------CC------------Cc----hhhhhcccc
Confidence            6533221100     00000              00               00            00    001134457


Q ss_pred             ccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCcccccccc--------ccc-------cccceeEEecce
Q psy6394         347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHT--------AHV-------REASNVISIRGY  411 (1045)
Q Consensus       347 ~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~l~g~  411 (1045)
                      +|||+|||||+||||||+.|+|||++|||+|||||+|+++.+.....+.+        +.+       -.+|.++||+|+
T Consensus       172 laTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf  251 (474)
T KOG0558|consen  172 LATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGF  251 (474)
T ss_pred             ccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhH
Confidence            89999999999999999999999999999999999999998664322211        111       246999999999


Q ss_pred             eeeccccccccc
Q psy6394         412 VKGMFKSMTEAH  423 (1045)
Q Consensus       412 r~~m~k~Mt~S~  423 (1045)
                      +|+|.|+|+++.
T Consensus       252 ~rAMvKtMt~al  263 (474)
T KOG0558|consen  252 SRAMVKTMTEAL  263 (474)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999974

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=3.5e-36  Score=357.50  Aligned_cols=196  Identities=24%  Similarity=0.350  Sum_probs=171.8

Q ss_pred             ecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCc
Q psy6394         787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMR  865 (1045)
Q Consensus       787 Ir~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~  865 (1045)
                      ++.++.+.+.+.+..+++-..+.+.+|++..++.                           +.|+. ++++.|.      
T Consensus       143 vr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI---------------------------~kAvv~AL~~~P~------  189 (1228)
T PRK12270        143 VRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLI---------------------------GYALVQALKAFPN------  189 (1228)
T ss_pred             eecccHHHHHHHHHHHHHHhhhccCCcccHHHHH---------------------------HHHHHHHHHhCch------
Confidence            5678889999999999999999999999865432                           22322 3466665      


Q ss_pred             eeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecC-----CceeeeeecccCCCCHHHHHHHHH
Q psy6394         866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTK-----HGLVVPNIKSVNKLSLLDITRELL  940 (1045)
Q Consensus       866 i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~-----~GL~vPvi~~a~~~sl~~ia~~~~  940 (1045)
                            ||.+|..    +||.            ..|+.+.++||||||+++     +||+||+||+||+|++.+|..+++
T Consensus       190 ------mNasy~~----~DGK------------p~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~  247 (1228)
T PRK12270        190 ------MNRHYAE----VDGK------------PTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYE  247 (1228)
T ss_pred             ------hhceeec----cCCC------------ceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHH
Confidence                  5666532    3553            235889999999999999     699999999999999999999999


Q ss_pred             HHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEec-----CceEEEEEEEEeeecc
Q psy6394         941 RIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDA-----EMRVVAKCILNVTWAA 1015 (1045)
Q Consensus       941 ~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~-----~~~~~~~~~m~ltls~ 1015 (1045)
                      +|+.|||+|+|+++||+||||||||+||+|+.+|+|||||||+||||+|++...|++.+     .+++.+++||+||+||
T Consensus       248 dLV~KAR~gKLt~eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTy  327 (1228)
T PRK12270        248 DIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTY  327 (1228)
T ss_pred             HHHHHHHcCCCCHHHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeec
Confidence            99999999999999999999999999999999999999999999999999998888743     2479999999999999


Q ss_pred             cccccChHHHHHHHHHHHHhhc
Q psy6394        1016 DHRVVDGATVARAATLWKSLVE 1037 (1045)
Q Consensus      1016 DHRviDG~~aa~fl~~~k~~le 1037 (1045)
                      |||||||+++++||+.|+++||
T Consensus       328 DHRVIdGA~sg~FL~~ik~lLe  349 (1228)
T PRK12270        328 DHRIIQGAESGEFLRTIHQLLL  349 (1228)
T ss_pred             cceeeccHhHHHHHHHHHHHHh
Confidence            9999999999999999999998

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.97  E-value=2.3e-31  Score=310.79  Aligned_cols=143  Identities=40%  Similarity=0.653  Sum_probs=138.7

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |+.+..+|+|+||++++||++|||++++++++.+|+++++++++++|+|+|.++|++||||||||+|++|+.+|+|||||
T Consensus       268 i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~  347 (411)
T PRK11856        268 IVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINP  347 (411)
T ss_pred             EEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCC
Confidence            37778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+|||++|++.++||+.+| ++++|.+|+|||+||||+|||+++++||+.|+++||||..||+
T Consensus       348 p~~ail~iG~~~~~~~~~~g-~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~  410 (411)
T PRK11856        348 PEVAILGVGAIVERPVVVDG-EIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENPALLLL  410 (411)
T ss_pred             CceEEEEcccceEEEEEECC-EEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence            99999999999999999765 8999999999999999999999999999999999999999986

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.64  E-value=5.2e-16  Score=138.18  Aligned_cols=74  Identities=28%  Similarity=0.481  Sum_probs=72.1

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .+|++|.+|..+++++|.+|+  |++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~--v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWL--VEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEES--SSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEE--ECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            379999999999999999999  99999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.64  E-value=5.5e-16  Score=178.16  Aligned_cols=76  Identities=25%  Similarity=0.408  Sum_probs=74.2

Q ss_pred             eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ..+|+||+||++|+||+|++|+  |++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~--~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~   77 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWL--VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVA   77 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEE--cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEe
Confidence            3689999999999999999999  999999999999999999999999999999999999999999999999999996

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.60  E-value=3.5e-15  Score=132.83  Aligned_cols=74  Identities=27%  Similarity=0.470  Sum_probs=72.1

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      +++++|.+|..++++++.+|+  +++||.|++||+||+|||||+.++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~--v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWL--VEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEES--SSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEE--ECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            478999999999999999999  99999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.59  E-value=3.5e-15  Score=171.47  Aligned_cols=120  Identities=20%  Similarity=0.284  Sum_probs=103.7

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ..+++||++|++|+||+|++|+  |++||.|++||+|++||+||++++|+||.+|+|.++.+++|+.|.+|++|+.++..
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~--~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~   79 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWL--VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA   79 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEE--cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            3689999999999999999999  99999999999999999999999999999999999999999999999999999753


Q ss_pred             CccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhH
Q psy6394         527 DEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDI  588 (1045)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV  588 (1045)
                      ....                   ..-...++|.+++++++ ++++....+++..+++...++
T Consensus        80 ~~~~-------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  121 (371)
T PRK14875         80 EVSD-------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV  121 (371)
T ss_pred             CCCc-------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence            2110                   01134578899998888 899999888888777765555

>PRK06748 hypothetical protein; Validated

Probab=99.53  E-value=3.6e-14  Score=127.72  Aligned_cols=62  Identities=21%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc-CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|.+|+  |++||.|++||+|++||| ||++++|+||.+|+|.+|++++||.|++|++|+.|+
T Consensus        12 ~G~I~~w~--vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~   74 (83)
T PRK06748         12 YGKVEKLF--VRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR   74 (83)
T ss_pred             cEEEEEEE--eCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            39999999  999999999999999999 999999999999999999999999999999999996

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.49  E-value=1.5e-13  Score=161.83  Aligned_cols=80  Identities=26%  Similarity=0.456  Sum_probs=75.7

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEEEEec
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIEVE  266 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~i~~~  266 (1045)
                      ++|+||++|++|+||+|.+|+  |++||.|++||+|++|||||++++|+||.+|+|.+|++++|+ .|++|++|+.|+.+
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~   80 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWL--KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE   80 (464)
T ss_pred             cceecCCCCCCcceeEEEEEE--ecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence            489999999999999999999  999999999999999999999999999999999999999995 79999999999865


Q ss_pred             Ccc
Q psy6394         267 DEG  269 (1045)
Q Consensus       267 ~~~  269 (1045)
                      +++
T Consensus        81 ~~~   83 (464)
T PRK11892         81 GES   83 (464)
T ss_pred             CCc
Confidence            543

>PRK06748 hypothetical protein; Validated

Probab=99.46  E-value=2.2e-13  Score=122.61  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=60.9

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEec-cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      -|+|.+|+  |++||.|++||+|++||| ||+.++|+||.+|+|.+|++++||.|++|++|++|+.
T Consensus        12 ~G~I~~w~--vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLF--VRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEE--eCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            48999999  999999999999999999 9999999999999999999999999999999999963

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.36  E-value=2.8e-12  Score=113.32  Aligned_cols=62  Identities=31%  Similarity=0.351  Sum_probs=60.2

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|.+|+  |++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus        10 ~G~i~~~~--v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         10 VASVLEVV--VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            49999999  999999999999999999999999999999999999999999999999999884

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.31  E-value=9.8e-12  Score=110.19  Aligned_cols=72  Identities=26%  Similarity=0.452  Sum_probs=69.6

Q ss_pred             EEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         190 FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       190 ~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      |.+|++|.++.+|.+.+|+  +++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+.+..|++|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~--v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWL--KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEE--cCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            6789999999999999999  99999999999999999999999999999999999999999999999999874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.31  E-value=7.5e-12  Score=147.58  Aligned_cols=80  Identities=26%  Similarity=0.452  Sum_probs=75.6

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEEeec
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIEVE  526 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i~~~  526 (1045)
                      ++++||++|++|+||+|.+|+  |++||.|++||.|++|||||++++++||.+|+|.++++++|+ .|++|++|++|+.+
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~   80 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWL--KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE   80 (464)
T ss_pred             cceecCCCCCCcceeEEEEEE--ecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence            589999999999999999999  999999999999999999999999999999999999999995 79999999999765


Q ss_pred             Ccc
Q psy6394         527 DEG  529 (1045)
Q Consensus       527 ~~~  529 (1045)
                      ++.
T Consensus        81 ~~~   83 (464)
T PRK11892         81 GES   83 (464)
T ss_pred             CCc
Confidence            443

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.27  E-value=1.7e-11  Score=107.90  Aligned_cols=61  Identities=34%  Similarity=0.388  Sum_probs=59.7

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      |+|.+|+  +++||+|++||+|++||+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus        10 G~i~~~~--v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         10 GNVWKIV--VKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             EEEEEEE--eCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            9999999  999999999999999999999999999999999999999999999999999884

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.26  E-value=1.8e-11  Score=108.19  Aligned_cols=62  Identities=31%  Similarity=0.351  Sum_probs=60.2

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|.+|+  +++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.+..|++|+.|+
T Consensus        10 ~G~i~~~~--v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         10 VASVLEVV--VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            48999999  999999999999999999999999999999999999999999999999999884

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.24  E-value=1.5e-11  Score=122.85  Aligned_cols=61  Identities=23%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      |++.+.+  |++||+|++||.||.||.||+..+|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus        79 Gtv~~~~--V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          79 GTVYKPF--VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             eEEEEEe--eccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            8999999  999999999999999999999999999999999999999999999999999985

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.22  E-value=4.4e-11  Score=106.05  Aligned_cols=72  Identities=26%  Similarity=0.448  Sum_probs=69.2

Q ss_pred             EEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       450 i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      +.+|++|.++.+|++.+|+  +++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~--v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWL--KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEE--cCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            5689999999999999999  99999999999999999999999999999999999999999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.21  E-value=1e-11  Score=95.80  Aligned_cols=38  Identities=37%  Similarity=0.744  Sum_probs=34.2

Q ss_pred             ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHh
Q psy6394         345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIIT  382 (1045)
Q Consensus       345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~  382 (1045)
                      ++.+||+||+||+|+|||++.|+|||++|||+|+||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            56899999999999999999999999999999999985

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.13  E-value=1.8e-10  Score=101.46  Aligned_cols=62  Identities=34%  Similarity=0.382  Sum_probs=60.0

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      -|+|.+|+  +++||.|++||+|+++|+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus         9 ~G~i~~~~--v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIV--VKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEE--eCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            48999999  999999999999999999999999999999999999999999999999999884

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.11  E-value=2.5e-10  Score=111.93  Aligned_cols=61  Identities=25%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .|+|.+|+  +++||.|++||+|+++|+||+..+|.||.+|+|.+|++++||.|..|++|+.|
T Consensus        69 ~G~V~~i~--V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         69 PGTILKVL--VAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CEEEEEEE--eCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            48999999  99999999999999999999999999999999999999999999999999987

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.10  E-value=1.4e-10  Score=115.92  Aligned_cols=62  Identities=23%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      -|++.+.+  |++||+|++||.||.||.||+.++|+||.+|+|.+|++++||.|..|++|+.|+
T Consensus        78 ~Gtv~~~~--V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          78 VGTVYKPF--VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             ceEEEEEe--eccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            38899999  999999999999999999999999999999999999999999999999999985

>PRK07051 hypothetical protein; Validated

Probab=99.06  E-value=8.4e-10  Score=99.86  Aligned_cols=70  Identities=20%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             eEEEEccCCCCCCceEEEEE-------EeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCe
Q psy6394         187 LIQFKLADIGEGIREVNIKE-------WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKP  259 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~-------w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~  259 (1045)
                      +.+|..|.      .|++.+       |+  +++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++
T Consensus         3 ~~~~~ap~------~g~~~~~~~~~~~~~--v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~   74 (80)
T PRK07051          3 QHEIVSPL------PGTFYRRPSPDAPPY--VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQV   74 (80)
T ss_pred             ccEEeCCC------ceEEEecCCCCCCCc--cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCE
Confidence            44566663      356667       99  9999999999999999999999999999999999999999999999999


Q ss_pred             EEEEE
Q psy6394         260 LLDIE  264 (1045)
Q Consensus       260 l~~i~  264 (1045)
                      |+.|+
T Consensus        75 l~~i~   79 (80)
T PRK07051         75 LARIE   79 (80)
T ss_pred             EEEEe
Confidence            99985

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.04  E-value=6.3e-10  Score=112.33  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=59.5

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .|+|.+|+  |++||.|++||.|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus        92 ~G~I~~~~--V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         92 PGKILRIL--VREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CeEEEEEE--eCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            48999999  99999999999999999999999999999999999999999999999999987

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.00  E-value=1.1e-09  Score=107.34  Aligned_cols=61  Identities=25%  Similarity=0.242  Sum_probs=59.5

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      .|+|.+|+  +++||.|++||.|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus        69 ~G~V~~i~--V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         69 PGTILKVL--VAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CEEEEEEE--eCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            48999999  99999999999999999999999999999999999999999999999999987

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=98.99  E-value=8.9e-10  Score=117.87  Aligned_cols=57  Identities=28%  Similarity=0.375  Sum_probs=55.5

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      +|+  |++||.|++||+||+||+||+.++|+|+.+|+|.+|++++||.|.+|++|+.|+
T Consensus       217 ~w~--VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        217 PPF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             cce--eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            399  999999999999999999999999999999999999999999999999999985

>PRK07051 hypothetical protein; Validated

Probab=98.97  E-value=2.7e-09  Score=96.59  Aligned_cols=70  Identities=20%  Similarity=0.125  Sum_probs=63.9

Q ss_pred             eEEEEecCCCCCcceeEEEE-------eeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCc
Q psy6394         447 LIQFNLADIGEGIREVNIKE-------WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKP  519 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~-------w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~  519 (1045)
                      ..++..|..      |++.+       |+  +++||.|++||.|+++|+||+.++|.||.+|+|.++++++|+.|..|++
T Consensus         3 ~~~~~ap~~------g~~~~~~~~~~~~~--v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~   74 (80)
T PRK07051          3 QHEIVSPLP------GTFYRRPSPDAPPY--VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQV   74 (80)
T ss_pred             ccEEeCCCc------eEEEecCCCCCCCc--cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCE
Confidence            456667743      56777       99  9999999999999999999999999999999999999999999999999


Q ss_pred             eEEEe
Q psy6394         520 LLDIE  524 (1045)
Q Consensus       520 l~~i~  524 (1045)
                      |++++
T Consensus        75 l~~i~   79 (80)
T PRK07051         75 LARIE   79 (80)
T ss_pred             EEEEe
Confidence            99985

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=98.97  E-value=1.4e-09  Score=110.73  Aligned_cols=61  Identities=26%  Similarity=0.344  Sum_probs=58.0

Q ss_pred             EEEEE-------EeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         202 VNIKE-------WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       202 g~i~~-------w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      |++.+       |+  |++||.|++||+||.||+||+..+|.|+.+|+|.+|+++.|+.|..|++|+.|+
T Consensus        89 G~~~~~~~P~~~~~--v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        89 GTFYRAPSPDAKPF--VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             EEEEecCCCCCCcc--ccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            66665       99  999999999999999999999999999999999999999999999999999874

The gene name is accB or fabE.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.96  E-value=2.7e-09  Score=92.17  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=59.4

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      -+|.|.+|+  +++||.|++||.|+++|++|+..+|.||.+|+|.+++++.|+.|..|++|+.|
T Consensus         6 ~~G~v~~~~--v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVL--VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEE--eCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            469999999  99999999999999999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.91  E-value=3.3e-09  Score=107.22  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=59.4

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      .|+|.+|+  +++||.|++||.|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus        92 ~G~I~~~~--V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         92 PGKILRIL--VREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CeEEEEEE--eCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            48899999  99999999999999999999999999999999999999999999999999987

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.90  E-value=3.5e-09  Score=107.73  Aligned_cols=57  Identities=26%  Similarity=0.366  Sum_probs=55.1

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+  |++||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus        99 ~~~--v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         99 PPF--VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             Ccc--cCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            399  999999999999999999999999999999999999999999999999999873

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.87  E-value=4.5e-09  Score=127.00  Aligned_cols=67  Identities=24%  Similarity=0.323  Sum_probs=63.3

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ++..|. |+|++|+  |++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|.+|++|+.|+
T Consensus       528 v~apm~-G~V~~~~--V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~  594 (596)
T PRK14042        528 ITVAIP-GSIIAIH--VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE  594 (596)
T ss_pred             EecCcc-eEEEEEE--eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence            444555 9999999  999999999999999999999999999999999999999999999999999996

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=98.85  E-value=5.4e-09  Score=111.98  Aligned_cols=68  Identities=26%  Similarity=0.331  Sum_probs=61.8

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      ..-+..|+.|+        .|+  |++||.|++||.|++||+||+.++|+||.+|+|.+|++++||.|.+|++|+.|+
T Consensus       206 Gtf~r~p~pge--------~w~--VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        206 GTFYRSPAPGE--------PPF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             eEEEeccCCCC--------cce--eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            34455666654        799  999999999999999999999999999999999999999999999999999984

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=98.85  E-value=4.7e-10  Score=86.66  Aligned_cols=38  Identities=29%  Similarity=0.490  Sum_probs=33.8

Q ss_pred             CCCCCccccccCCCCCCCcCccccCCCCCccchHhHHh
Q psy6394         553 DTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIIT  590 (1045)
Q Consensus       553 ~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~  590 (1045)
                      ++.+||++|++|+|+|||+++|+|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            46789999999999999999999999999999999974

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.85  E-value=1.1e-08  Score=88.43  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      -.|.+.+|+  +++||.|++||.|+++|++|...+|.||.+|+|.+++++.|+.|..|++|+.|
T Consensus         6 ~~G~v~~~~--v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVL--VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEE--eCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            468899999  99999999999999999999999999999999999999999999999999864

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.84  E-value=2.3e-08  Score=86.52  Aligned_cols=73  Identities=40%  Similarity=0.632  Sum_probs=70.2

Q ss_pred             EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      ++.+|+++....+|+|.+|+  ++.|+.|..|++++.+|++|+.+.+.++.+|++.+.++.+|+.+..|++|++|
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~--~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEE--ECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            47899999999999999999  99999999999999999999999999999999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=98.80  E-value=1.1e-08  Score=104.18  Aligned_cols=57  Identities=28%  Similarity=0.395  Sum_probs=55.3

Q ss_pred             EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+  |++||.|++||.||.||+||+.++|+|+.+|+|.+|++++|+.|..|++|+.|+
T Consensus       100 ~~~--v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       100 KPF--VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             Ccc--ccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            499  999999999999999999999999999999999999999999999999999874

The gene name is accB or fabE.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.75  E-value=6.2e-08  Score=83.81  Aligned_cols=73  Identities=38%  Similarity=0.621  Sum_probs=70.1

Q ss_pred             EEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       449 ~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      ++.+|+++....+|+|.+|+  +..|+.|..|++++.++++|+..++.+|.+|++.+.++.+|+.+..|++|++|
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~--~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEE--ECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            47899999999999999999  99999999999999999999999999999999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.74  E-value=2.2e-08  Score=101.96  Aligned_cols=57  Identities=26%  Similarity=0.366  Sum_probs=55.3

Q ss_pred             EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+  |++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        99 ~~~--v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         99 PPF--VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             Ccc--cCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            599  999999999999999999999999999999999999999999999999999873

>TIGR02712 urea_carbox urea carboxylase

Probab=98.72  E-value=2.3e-08  Score=130.59  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|.+|+  |++||.|++||+|++|||||++++|.||.+|+|.++++++|+.|.+|++|+.|+
T Consensus      1140 ~G~v~~~~--v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVL--VEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEE--eCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            49999999  999999999999999999999999999999999999999999999999999884

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.71  E-value=2.9e-08  Score=120.16  Aligned_cols=63  Identities=24%  Similarity=0.334  Sum_probs=61.0

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      .|+|++|+  |++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus       533 ~G~V~~~~--V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        533 PGSIIAIH--VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             ceEEEEEE--eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            48999999  9999999999999999999999999999999999999999999999999999963

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=98.71  E-value=2.4e-07  Score=98.64  Aligned_cols=177  Identities=15%  Similarity=0.107  Sum_probs=120.5

Q ss_pred             CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEe
Q psy6394         698 NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAID  777 (1045)
Q Consensus       698 ~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~  777 (1045)
                      ..-|.+.++.++|+|.|.++.++          .++++...++.++.+|+-++|+|+-++.+ ++++++++.++.+.+|-
T Consensus        23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~-~g~v~~~d~i~ps~Tv~   91 (206)
T PF00302_consen   23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVD-DGEVVYYDRIDPSYTVF   91 (206)
T ss_dssp             TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEET-TSCEEEESS-EEEEEEE
T ss_pred             CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeC-CCcEEEECCcceeeeEE
Confidence            46799999999999999877553          46899999999999999999999999986 34899999999999998


Q ss_pred             cC-CCeeeeeecccccccHHHHHHHHHHHHhccccC-CCCCCc-cCCCceEeeccCCccceeecc-ccccc--ceeeEee
Q psy6394         778 TK-HGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLPRD-IQGGTISMSNVGNVGGTLVQP-IIVPG--QVCIVAF  851 (1045)
Q Consensus       778 t~-~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~~d-~~ggTftISNlG~~G~~~~tp-ii~~p--q~ailav  851 (1045)
                      .+ ++...-+.- .-..++.++.+...+.++++++. .+.++. .....|.+|++=-+.-+.++. +-+.+  ..-++..
T Consensus        92 ~~~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~  170 (206)
T PF00302_consen   92 HKDDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITW  170 (206)
T ss_dssp             ETTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEE
T ss_pred             eCCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEe
Confidence            64 454432211 12347888888888877776553 344432 334567787776555444322 22221  1247888


Q ss_pred             ccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhh
Q psy6394         852 GKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLW  895 (1045)
Q Consensus       852 G~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~  895 (1045)
                      |+..+.     +|    |-.||+++..+|.++||..+++|++.+
T Consensus       171 GK~~~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~l  205 (206)
T PF00302_consen  171 GKYFEE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEEL  205 (206)
T ss_dssp             E--EEE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHH
T ss_pred             eeeEeE-----CC----EEEEEEEEEEecccccHHHHHHHHHHh
Confidence            887543     23    578999999999999999999999876

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.65  E-value=4.2e-08  Score=119.17  Aligned_cols=63  Identities=30%  Similarity=0.379  Sum_probs=58.3

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeE
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL  260 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l  260 (1045)
                      ++..|. |+|++|+  |++||.|++||+|++||+||++++|.||.+|+|.+|++++|+.|.+|++|
T Consensus       520 v~ap~~-G~v~~~~--V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       520 VTAPIA-GSIVKVK--VSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             EeCCcc-EEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            333444 9999999  99999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.64  E-value=5.4e-08  Score=125.93  Aligned_cols=67  Identities=25%  Similarity=0.314  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ++..|. |+|++|+  |++||.|++||+|++||+||++++|.||.+|+|.+|++++|+.|.+|++|+.|+
T Consensus      1077 I~a~~~-G~v~~~~--v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1077 VGAPMP-GVIIEVK--VSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             eecCCC-cEEEEEE--eCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            455554 9999999  999999999999999999999999999999999999999999999999999884

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.62  E-value=7.7e-08  Score=116.99  Aligned_cols=61  Identities=38%  Similarity=0.427  Sum_probs=59.6

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .|+|++|+  |++||.|++||+||+||+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       532 ~G~I~~~~--V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        532 AGNIFKVI--VTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             cEEEEEEE--eCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            48999999  99999999999999999999999999999999999999999999999999987

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=98.59  E-value=1.1e-06  Score=94.20  Aligned_cols=177  Identities=15%  Similarity=0.129  Sum_probs=123.1

Q ss_pred             CCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecC
Q psy6394         700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTK  779 (1045)
Q Consensus       700 iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~  779 (1045)
                      -|++.++.++|+|+|.++.++          .++++.+.++.|+.+|+-++|+|+-++.+  ++++.++.++.+..|-.+
T Consensus        30 ~~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~--~~v~~~D~i~ps~Ti~~~   97 (219)
T PRK13757         30 QCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKD--GELVIWDSVHPCYTVFHE   97 (219)
T ss_pred             CCceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEEC--CeEEEEeEEeeeEEEEeC
Confidence            345999999999999866543          47899999999999999999999999963  678888999999999865


Q ss_pred             C-CeeeeeecccccccHHHHHHHHHHHHhccccC-CCCCCccCCCceEeeccCCccceee-ccccccc--ceeeEeeccc
Q psy6394         780 H-GLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLPRDIQGGTISMSNVGNVGGTLV-QPIIVPG--QVCIVAFGKI  854 (1045)
Q Consensus       780 ~-GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~~d~~ggTftISNlG~~G~~~~-tpii~~p--q~ailavG~i  854 (1045)
                      + +...-+ .-.-..++.++.+.....++++.+. .+-+.......|.||.+=-+.-+.+ .++.+..  .+-++..|+.
T Consensus        98 ~~~tFs~~-~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy  176 (219)
T PRK13757         98 QTETFSSL-WSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY  176 (219)
T ss_pred             CCceEEEE-EecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeece
Confidence            5 433322 1222335666666666666666654 3434333345666665544332222 1111111  1236788877


Q ss_pred             eeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhc
Q psy6394         855 QLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL  898 (1045)
Q Consensus       855 ~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~  898 (1045)
                      .++     +|    |-+|++++..+|-++||..+++|++.+.++
T Consensus       177 ~~~-----~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~  211 (219)
T PRK13757        177 YTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQY  211 (219)
T ss_pred             EEE-----CC----EEEEEEEEEEehhccchHHHHHHHHHHHHH
Confidence            432     22    578999999999999999999999999887

>TIGR02712 urea_carbox urea carboxylase

Probab=98.56  E-value=1.1e-07  Score=124.37  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=60.2

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|.+|+  |++||.|++||+|++|||||++++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus      1140 ~G~v~~~~--v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVL--VEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEE--eCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            58999999  999999999999999999999999999999999999999999999999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.50  E-value=1.8e-07  Score=113.68  Aligned_cols=58  Identities=31%  Similarity=0.389  Sum_probs=56.3

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCce
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL  520 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l  520 (1045)
                      -|+|++|+  |++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus       525 ~G~v~~~~--V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       525 AGSIVKVK--VSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             cEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            48999999  99999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.48  E-value=2.9e-07  Score=112.03  Aligned_cols=61  Identities=38%  Similarity=0.427  Sum_probs=59.6

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      .|+|.+|+  |++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       532 ~G~I~~~~--V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        532 AGNIFKVI--VTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             cEEEEEEE--eCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            58899999  99999999999999999999999999999999999999999999999999987

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.47  E-value=3.3e-07  Score=111.80  Aligned_cols=62  Identities=29%  Similarity=0.391  Sum_probs=60.3

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|.+|+  |++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus       530 ~G~v~~~~--V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVK--VKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEE--eCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            48999999  999999999999999999999999999999999999999999999999999985

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.43  E-value=3.6e-07  Score=118.48  Aligned_cols=62  Identities=26%  Similarity=0.285  Sum_probs=60.1

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|++|+  |++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus      1082 ~G~v~~~~--v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1082 PGVIIEVK--VSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             CcEEEEEE--eCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            48999999  999999999999999999999999999999999999999999999999999874

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.40  E-value=5.5e-07  Score=117.29  Aligned_cols=67  Identities=28%  Similarity=0.404  Sum_probs=62.7

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ++..|. |+|++|+  |++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1079 v~apm~-G~v~~i~--v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1079 VGAPMP-GSVVTVL--VKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             EeCCce-EEEEEEE--cCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            344444 9999999  999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.33  E-value=7.5e-07  Score=103.70  Aligned_cols=62  Identities=27%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|+...  |++|++|.+||+|+++|.|||+..|.||.+|+|+++.+.+||.|..|++|+.|+
T Consensus       583 pG~v~~v~--V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVA--VKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEE--ecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            38999999  999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.31  E-value=7.7e-07  Score=106.25  Aligned_cols=67  Identities=30%  Similarity=0.439  Sum_probs=63.3

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      +|..|. |.|++..  |++||+|++||+|+.+|.|||+..|.||.||+|.+++|+.||.|..|+.|..++
T Consensus      1082 igApmp-G~Vv~v~--V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1082 IGAPMP-GVVVEVK--VKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             cCCCCC-CceEEEE--EccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            566676 9999999  999999999999999999999999999999999999999999999999998874

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.30  E-value=1.3e-06  Score=106.55  Aligned_cols=62  Identities=29%  Similarity=0.391  Sum_probs=60.3

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|.+|+  |++||.|++||+|+++|++|+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus       530 ~G~v~~~~--V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVK--VKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEE--eCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            58899999  999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.18  E-value=3e-06  Score=110.52  Aligned_cols=62  Identities=29%  Similarity=0.381  Sum_probs=60.3

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|++|+  |++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1084 ~G~v~~i~--v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1084 PGSVVTVL--VKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             eEEEEEEE--cCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            48999999  999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.12  E-value=3.6e-06  Score=98.19  Aligned_cols=62  Identities=27%  Similarity=0.366  Sum_probs=60.1

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|+...  |++|+.|.+||+|+.+|.||++..|.||.+|+|.++.+.+||.|..|++|+.|+
T Consensus       583 pG~v~~v~--V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVA--VKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEE--ecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            38899999  999999999999999999999999999999999999999999999999999885

>KOG0369|consensus

Probab=98.01  E-value=7.9e-06  Score=95.81  Aligned_cols=68  Identities=26%  Similarity=0.359  Sum_probs=63.8

Q ss_pred             CCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       194 ~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .+|..|. |+|+++.  |++|++|++||+||.+..|||+|-|.||.+|+|+++++..|+.+.-|+.++.++
T Consensus      1108 ~igAPMp-G~vieik--vk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1108 HIGAPMP-GTVIEIK--VKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             cccCCCC-CceEEEE--EecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            3566666 9999999  999999999999999999999999999999999999999999999999999885

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=97.92  E-value=1.1e-05  Score=96.69  Aligned_cols=61  Identities=30%  Similarity=0.425  Sum_probs=59.2

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      |.|++..  |++||+|++||+|+.+|.||++..|.||++|+|.+++|+.||.+..|+.|..++
T Consensus      1088 G~Vv~v~--V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1088 GVVVEVK--VKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             CceEEEE--EccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            7899999  999999999999999999999999999999999999999999999999998874

>cd06848 GCS_H Glycine cleavage H-protein

Probab=97.87  E-value=2.1e-05  Score=73.79  Aligned_cols=61  Identities=23%  Similarity=0.129  Sum_probs=49.0

Q ss_pred             EEEccCCCCCCceEEEEE-EeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC
Q psy6394         189 QFKLADIGEGIREVNIKE-WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD  252 (1045)
Q Consensus       189 ~~~~P~lg~~~~eg~i~~-w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~  252 (1045)
                      .+-|-+.+..+ =|+|.. |+  +++|+.|++||+|++||++|+..+|.||.+|+|.++..+.++
T Consensus        17 ~lGlt~~~~~~-lG~i~~i~~--~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~   78 (96)
T cd06848          17 TVGITDYAQDL-LGDIVFVEL--PEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD   78 (96)
T ss_pred             EEeeCHHHHhh-CCCEEEEEe--cCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence            34444444433 366777 55  778999999999999999999999999999999999887665

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>cd06848 GCS_H Glycine cleavage H-protein

Probab=97.73  E-value=5e-05  Score=71.23  Aligned_cols=63  Identities=22%  Similarity=0.117  Sum_probs=49.1

Q ss_pred             EEEEecCCCCCcceeEEEE-eeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCE
Q psy6394         448 IQFNLADIGEGIREVNIKE-WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV  513 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~-w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~  513 (1045)
                      ..+-|-+.+..+ -|+|.. |+  +++|+.|++||.|++||++|+..+|.||.+|+|.+++.+.++.
T Consensus        16 ~~lGlt~~~~~~-lG~i~~i~~--~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          16 ATVGITDYAQDL-LGDIVFVEL--PEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEeeCHHHHhh-CCCEEEEEe--cCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            344444443322 356776 67  7789999999999999999999999999999999998665543

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=97.63  E-value=0.0012  Score=68.47  Aligned_cols=183  Identities=13%  Similarity=0.120  Sum_probs=124.0

Q ss_pred             hcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEE
Q psy6394         696 EANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIA  775 (1045)
Q Consensus       696 ~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiA  775 (1045)
                      ++...||+.+....|++.+-.+.++          .+++++++++.|+.+++.++++|+-++.  ++.+.+.+.++..+.
T Consensus        24 R~~~~p~y~i~~~LDvtn~~~~vk~----------~~l~Ff~a~l~avtr~~n~~~EFRlr~~--~~~~~~~d~v~p~~t   91 (219)
T COG4845          24 RLLQYPHYDINLQLDVTNFYGYVKE----------NGLSFFPALLYAVTRCANRHQEFRLRIQ--NGQLGYWDNVPPMYT   91 (219)
T ss_pred             hhcccceEeeeeeeehhHHHHHHHH----------cCCcchHHHHHHHHHHhcccHHhHhhhc--CCeeEEeecCCcceE
Confidence            3457999999999999998666543          3689999999999999999999999998  478999999999999


Q ss_pred             EecCCC-eeeeeecccccccHHHHHHHHHHHHhccccCC-CCCCccCCCceEeeccCCccceeecccccccceeeEeec-
Q psy6394         776 IDTKHG-LVVPNIKSVNKLCLLDITRELLRIQGCSHEGK-VLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-  852 (1045)
Q Consensus       776 V~t~~G-L~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k-l~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-  852 (1045)
                      |..+++ ++. ++----+.+..++.+....-+++.+.+. +..+|-.-.  -+-+++.+-...||.+-       +-.+ 
T Consensus        92 v~~~~~e~Fs-~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~--~~~~~s~lPWlsFtslS-------~~~~~  161 (219)
T COG4845          92 VFHGETETFS-VLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPC--DVYIFSNLPWLSFTSLS-------HHYRR  161 (219)
T ss_pred             EEcCCCcEEE-EEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcc--eeEEeccccccceeeee-------eeccC
Confidence            998655 433 2222245667777776666666655543 212111111  11122222222233321       1111 


Q ss_pred             -cceeEeEe------ccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCc
Q psy6394         853 -KIQLLPRF------DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDH  907 (1045)
Q Consensus       853 -~i~~~p~~------~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v  907 (1045)
                       ++.-.|++      ..||+    -.|+++...+|-.+||-..+.|++.+.++   +.+|..
T Consensus       162 ~k~~~~PiF~~Grf~~~~Gk----l~lPlavq~hHA~vDG~Hi~~l~~~lQ~~---~~~~~~  216 (219)
T COG4845         162 NKIYGQPIFYAGRFYEEDGK----LTLPLAVQAHHANVDGFHIGQLFDQLQTL---FSPPPC  216 (219)
T ss_pred             CccccceeEeecceeccCCe----EEEeEEEEecccccchhhHHHHHHHHHHH---hcCCCC
Confidence             33334444      24554    45899999999999999999999999998   887653

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.58  E-value=9.4e-05  Score=70.97  Aligned_cols=56  Identities=20%  Similarity=0.213  Sum_probs=45.6

Q ss_pred             CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEec
Q psy6394         211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEVE  266 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~~  266 (1045)
                      .++|+.|++||++++||++|+..+|.||.+|+|.++.-+..+.   +   +.| ..|+.|...
T Consensus        38 p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~  100 (110)
T TIGR03077        38 PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLD  100 (110)
T ss_pred             CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEEC
Confidence            5789999999999999999999999999999999996655543   2   233 377777643

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0369|consensus

Probab=97.51  E-value=0.00012  Score=86.38  Aligned_cols=62  Identities=26%  Similarity=0.332  Sum_probs=59.7

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      -|+|+++.  |++|++|++||+|+.+..+|+++-|.||.+|+|+++.+..|+.+.-|+.++.++
T Consensus      1114 pG~vieik--vk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIK--VKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEE--EecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            38899999  999999999999999999999999999999999999999999999999998875

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.48  E-value=0.00026  Score=69.87  Aligned_cols=56  Identities=23%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEE---eeCCCCeec---CCC-eEEEEEec
Q psy6394         211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV---YYGEGDVAL---VGK-PLLDIEVE  266 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i---~~~~g~~v~---vG~-~l~~i~~~  266 (1045)
                      .++|++|++||+++.||++|+..+|.||.+|+|.++   +....+.+.   .|+ .|+.|...
T Consensus        45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~  107 (127)
T PRK01202         45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS  107 (127)
T ss_pred             CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence            678999999999999999999999999999999999   444445555   665 99999854

>KOG0238|consensus

Probab=97.47  E-value=8.7e-05  Score=85.56  Aligned_cols=61  Identities=23%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      |.|.+++  ||+||.|++||.|+.++.||+...+.||.+|+|+.+.++.|+.|.-|.+|..++
T Consensus       610 G~Iekv~--Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  610 GIIEKVL--VKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             Ceeeeee--ccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            7899999  999999999999999999999999999999999999999999999999998763

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.44  E-value=0.00024  Score=68.58  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=43.9

Q ss_pred             CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC---ee---cCCC-eEEEEEe
Q psy6394         211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD---VA---LVGK-PLLDIEV  265 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~---~v---~vG~-~l~~i~~  265 (1045)
                      .++|++|++||++++||++|+..+|.||.+|+|.++.-..-+   .+   +.|. .|+.+..
T Consensus        40 p~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~  101 (114)
T PRK00624         40 PSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQL  101 (114)
T ss_pred             CCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEE
Confidence            578999999999999999999999999999999999543332   22   2333 7777764

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.29  E-value=0.00033  Score=67.25  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC
Q psy6394         472 TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG  511 (1045)
Q Consensus       472 ~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G  511 (1045)
                      ++|+.|++||++++||++|+..+|.||.+|+|.+++-+..
T Consensus        39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~   78 (110)
T TIGR03077        39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE   78 (110)
T ss_pred             CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence            6799999999999999999999999999999999964333

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.21  E-value=0.00041  Score=69.85  Aligned_cols=77  Identities=13%  Similarity=0.098  Sum_probs=57.0

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee------cC-CCeE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA------LV-GKPL  260 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v------~v-G~~l  260 (1045)
                      ..+=|-+.+..+- |+|+.+. ..++|++|++||+++.||++|+..+|.||.+|+|.++....-+..      +. ...|
T Consensus        31 ~~vGitd~aq~~l-G~I~~v~-lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl  108 (144)
T PRK13380         31 VTVGITDYAQTMA-GDVVFVR-LKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWF  108 (144)
T ss_pred             EEEecCHHHHHhc-CCEEEEE-cCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeE
Confidence            3455555544432 6677776 235899999999999999999999999999999999988766542      22 3477


Q ss_pred             EEEEec
Q psy6394         261 LDIEVE  266 (1045)
Q Consensus       261 ~~i~~~  266 (1045)
                      +.+...
T Consensus       109 ~~v~~~  114 (144)
T PRK13380        109 FRFKPA  114 (144)
T ss_pred             EEEEEC
Confidence            777643

>KOG0368|consensus

Probab=97.16  E-value=0.0005  Score=87.12  Aligned_cols=65  Identities=18%  Similarity=0.331  Sum_probs=61.5

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  267 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~  267 (1045)
                      ..|++++|+  |+.|+.|..||+-+|||.|||.|.+.|+.+|+| +...++|+.+..|.+|+.++-++
T Consensus       692 s~GKLl~yl--VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  692 SPGKLLQYL--VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD  756 (2196)
T ss_pred             CCccceEEE--ecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence            579999999  999999999999999999999999999999988 78899999999999999998554

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.12  E-value=0.00062  Score=65.78  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=34.6

Q ss_pred             CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         472 TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       472 ~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      ++|+.|++||++++||++|+..+|.||.+|+|.+++
T Consensus        41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            679999999999999999999999999999999995

>KOG0238|consensus

Probab=97.05  E-value=0.00039  Score=80.32  Aligned_cols=61  Identities=23%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      |.|.+.+  |++||.|++||.|+.++.+|+..-+.||.+|+|..+.++.|+.|.-|.+|..++
T Consensus       610 G~Iekv~--Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  610 GIIEKVL--VKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             Ceeeeee--ccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            5799999  999999999999999999999999999999999999999999999999998763

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=96.99  E-value=0.0018  Score=74.21  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ..|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  238 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA  238 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence            4799999999999999999999999999999743

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=96.96  E-value=0.0023  Score=72.93  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC--------------------------------------------
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK--------------------------------------------  230 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK--------------------------------------------  230 (1045)
                      |+.. ..|.|.+++  |++||.|++||+|+++++..                                            
T Consensus        50 i~~~-v~G~V~~v~--V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~  126 (310)
T PRK10559         50 IAPD-VSGLITQVN--VHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQ  126 (310)
T ss_pred             EccC-CceEEEEEE--eCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            4444 459999999  99999999999999997621                                            


Q ss_pred             --------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         231 --------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       231 --------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                                                ....|.||+||+|.++.+++|+.|..|++++.|...
T Consensus       127 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        127 ANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                                      024789999999999999999999999999998643

>PRK13380 glycine cleavage system protein H; Provisional

Probab=96.93  E-value=0.0013  Score=66.29  Aligned_cols=48  Identities=17%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             eEEEEeeeccC-CCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC
Q psy6394         462 VNIKEWNGNVT-EGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG  511 (1045)
Q Consensus       462 g~i~~w~~~v~-~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G  511 (1045)
                      |.|+.+.  +. +|+.|++||+++.||++|+..+|.||.+|+|.+++.+-.
T Consensus        44 G~I~~v~--lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~   92 (144)
T PRK13380         44 GDVVFVR--LKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE   92 (144)
T ss_pred             CCEEEEE--cCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence            5577776  65 899999999999999999999999999999999975443

>KOG0368|consensus

Probab=96.85  E-value=0.0013  Score=83.64  Aligned_cols=66  Identities=18%  Similarity=0.323  Sum_probs=61.0

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCc
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE  528 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~  528 (1045)
                      .-|++++|+  |+.|+.|..||+-++||.||+.|.+.|+.+|+| +...++|+.+.+|++|+.++...+
T Consensus       692 s~GKLl~yl--VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp  757 (2196)
T KOG0368|consen  692 SPGKLLQYL--VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP  757 (2196)
T ss_pred             CCccceEEE--ecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence            568999999  999999999999999999999999999999999 555799999999999999986543

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=96.84  E-value=0.002  Score=72.96  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=56.6

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  230 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  230 (1045)
                      .+|.|.+++  |++||.|++||+|+.+++.-                                                 
T Consensus        33 ~~G~V~~i~--v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~  110 (322)
T TIGR01730        33 VAGKITKIS--VREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAA  110 (322)
T ss_pred             ccEEEEEEE--cCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence            459999999  99999999999999997531                                                 


Q ss_pred             ----------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         231 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       231 ----------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                                            ....|.||.+|+|..+.+..|+.+..|++|+.|..
T Consensus       111 ~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~  167 (322)
T TIGR01730       111 VEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVD  167 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence                                  13479999999999999999999999999999973

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=96.76  E-value=0.0046  Score=73.09  Aligned_cols=65  Identities=11%  Similarity=0.097  Sum_probs=55.6

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcC------------------------------------------------Cc
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESD------------------------------------------------KA  231 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetd------------------------------------------------Ka  231 (1045)
                      -.|.|.+.+ .+++||.|++||+|++|++.                                                ..
T Consensus       130 v~G~V~~l~-~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~  208 (409)
T PRK09783        130 AAGFIDKVY-PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQT  208 (409)
T ss_pred             cCEEEEEEE-ecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence            358999985 16899999999999999831                                                11


Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      ...|.||+||+|.+..+.+|+.|..|++|+.|..
T Consensus       209 ~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d  242 (409)
T PRK09783        209 RFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG  242 (409)
T ss_pred             cEEEECCCCeEEEEEECCCCCEECCCCeEEEEEc
Confidence            3579999999999999999999999999999963

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=96.75  E-value=0.0022  Score=52.77  Aligned_cols=35  Identities=34%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ++.|.+|.+|+|.++++++|+.|+.|++|+.|+..
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            46899999999999999999999999999999843

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.69  E-value=0.0036  Score=72.30  Aligned_cols=34  Identities=18%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ..|.||+||+|.++.+.+|+.|..|++|+.|...
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~  242 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT  242 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence            4789999999999999999999999999999744

>TIGR00527 gcvH glycine cleavage system H protein

Probab=96.68  E-value=0.0019  Score=63.74  Aligned_cols=56  Identities=27%  Similarity=0.227  Sum_probs=45.6

Q ss_pred             CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee------c-CCCeEEEEEec
Q psy6394         211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA------L-VGKPLLDIEVE  266 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v------~-vG~~l~~i~~~  266 (1045)
                      .++|++|++||+++.||++|+..+|.||.+|+|.++.-..-+..      + -...|+.|...
T Consensus        44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~  106 (127)
T TIGR00527        44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLS  106 (127)
T ss_pred             CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecC
Confidence            57899999999999999999999999999999999876655431      1 23577777643

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=96.65  E-value=0.0036  Score=61.85  Aligned_cols=56  Identities=23%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee---CCCCEEe---cC-CceEEEeec
Q psy6394         471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY---GEGDVAL---VG-KPLLDIEVE  526 (1045)
Q Consensus       471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~---~~G~~v~---vg-~~l~~i~~~  526 (1045)
                      .++|+.|++||+++.||++|+..+|.||.+|+|.+++-   ...+.+.   -| .-|+.+...
T Consensus        45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~  107 (127)
T PRK01202         45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS  107 (127)
T ss_pred             CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence            36799999999999999999999999999999999943   3334444   44 377777654

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=96.61  E-value=0.0048  Score=70.69  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=31.5

Q ss_pred             eEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ..|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  238 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA  238 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence            4799999999999999999999999999999754

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=96.57  E-value=0.0061  Score=69.42  Aligned_cols=65  Identities=14%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  |++||.|++||+|+++++..                                                 
T Consensus        54 v~G~V~~v~--V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~  131 (310)
T PRK10559         54 VSGLITQVN--VHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVL  131 (310)
T ss_pred             CceEEEEEE--eCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            469999999  99999999999999998731                                                 


Q ss_pred             ---------------------eeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         491 ---------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       491 ---------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                                           ....|.||++|+|.++.+++|+.|..|++++.|...
T Consensus       132 ~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        132 QTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                                 024688999999999999999999999999988653

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=96.55  E-value=0.0052  Score=72.26  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ..|.||+||+|..+.+++|+.|..|++|+.|...
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~  249 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPA  249 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeC
Confidence            4799999999999999999999999999999743

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=96.49  E-value=0.0054  Score=71.92  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=58.3

Q ss_pred             ccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC-----------------------------------------
Q psy6394         192 LADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK-----------------------------------------  230 (1045)
Q Consensus       192 ~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-----------------------------------------  230 (1045)
                      .-.|+..+ .|.|.+++  +++||.|++||+|+.|++.-                                         
T Consensus        63 ~~~l~~~v-~G~V~~v~--v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~  139 (385)
T PRK09578         63 QAEVRARV-AGIVTART--YEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSER  139 (385)
T ss_pred             EEEEeccC-cEEEEEEE--CCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            33555553 49999999  99999999999999997631                                         


Q ss_pred             ------------------------------ceeEEeCCCCeEEEEEeeCCCCeecCC--CeEEEEEe
Q psy6394         231 ------------------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEV  265 (1045)
Q Consensus       231 ------------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG--~~l~~i~~  265 (1045)
                                                    ....|.||+||+|.+.++++|+.|..|  ++|+.|..
T Consensus       140 ~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~  206 (385)
T PRK09578        140 DYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ  206 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence                                          013899999999999999999999985  58888863

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=96.48  E-value=0.0043  Score=70.26  Aligned_cols=65  Identities=20%  Similarity=0.307  Sum_probs=57.0

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  +++||.|++||+|+.+++.-                                                 
T Consensus        33 ~~G~V~~i~--v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~  110 (322)
T TIGR01730        33 VAGKITKIS--VREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAA  110 (322)
T ss_pred             ccEEEEEEE--cCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence            458999999  99999999999999997631                                                 


Q ss_pred             ----------------------eeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                                            ....|.||++|+|..+.+++|+.+..|++|+.|...
T Consensus       111 ~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730       111 VEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence                                  134699999999999999999999999999998643

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=96.47  E-value=0.0047  Score=50.83  Aligned_cols=35  Identities=34%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             eeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       492 ~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      +..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            46789999999999999999999999999999764

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=96.37  E-value=0.0062  Score=69.91  Aligned_cols=34  Identities=12%  Similarity=0.241  Sum_probs=31.4

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      ...|.||+||+|..+.+.+|+.|..|++|+.|..
T Consensus       203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~  236 (331)
T PRK03598        203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSL  236 (331)
T ss_pred             cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEec
Confidence            3589999999999999999999999999999963

>TIGR00527 gcvH glycine cleavage system H protein

Probab=96.28  E-value=0.0051  Score=60.78  Aligned_cols=38  Identities=32%  Similarity=0.252  Sum_probs=35.6

Q ss_pred             cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee
Q psy6394         471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY  508 (1045)
Q Consensus       471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~  508 (1045)
                      .++|+.|++||+++.||++|+..+|.||.+|+|.+++-
T Consensus        44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~   81 (127)
T TIGR00527        44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND   81 (127)
T ss_pred             CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence            36899999999999999999999999999999999864

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=96.25  E-value=0.014  Score=69.02  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEecc------------------------------------------------cee
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESD------------------------------------------------KAS  492 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetd------------------------------------------------Ka~  492 (1045)
                      .|.|.+.+ .+++||.|++||+|+++++.                                                ...
T Consensus       131 ~G~V~~l~-~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        131 AGFIDKVY-PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             CEEEEEEE-ecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            58888874 16999999999999999831                                                113


Q ss_pred             eEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ..|.||++|+|.+..+.+|+.|..|++|+.|....
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~  244 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  244 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence            57999999999999999999999999999997543

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=96.20  E-value=0.012  Score=69.18  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=56.5

Q ss_pred             CCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------
Q psy6394         194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------  230 (1045)
Q Consensus       194 ~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------  230 (1045)
                      .|..- ..|.|.+++  +++||.|++||+|++|+..-                                           
T Consensus        63 ~l~~~-v~G~V~~i~--v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~  139 (385)
T PRK09859         63 EIRPQ-VGGIIIKRN--FIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDY  139 (385)
T ss_pred             EEecc-CcEEEEEEE--cCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence            34444 359999999  99999999999999997530                                           


Q ss_pred             ----------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCC--eEEEEE
Q psy6394         231 ----------------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIE  264 (1045)
Q Consensus       231 ----------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~--~l~~i~  264 (1045)
                                                  ....|.||+||+|.+.++.+|+.|..|+  +|+.|.
T Consensus       140 d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~  203 (385)
T PRK09859        140 DTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ  203 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence                                        1248999999999999999999999985  688875

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.20  E-value=0.0085  Score=58.85  Aligned_cols=63  Identities=24%  Similarity=0.133  Sum_probs=42.9

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee-------cCCCeEEEEEe
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA-------LVGKPLLDIEV  265 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v-------~vG~~l~~i~~  265 (1045)
                      |+|+.+. ..++|+.|++|++++.||+.|+..++.||.+|+|.++.-..-+..       .-...|+.|..
T Consensus        31 G~i~~v~-lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~  100 (122)
T PF01597_consen   31 GDIVYVE-LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKP  100 (122)
T ss_dssp             -SEEEEE--B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEE
T ss_pred             CceEEEE-EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEe
Confidence            4444443 367899999999999999999999999999999999865443221       12456777764

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.18  E-value=0.01  Score=68.64  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             eeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       492 ~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ...|.||++|+|.++.+++|+.|..|++|+.|...+
T Consensus       208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~  243 (346)
T PRK10476        208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD  243 (346)
T ss_pred             cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence            346899999999999999999999999999997543

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=96.07  E-value=0.016  Score=68.33  Aligned_cols=69  Identities=22%  Similarity=0.278  Sum_probs=56.1

Q ss_pred             cCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC------------------------------------------
Q psy6394         193 ADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------  230 (1045)
Q Consensus       193 P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------  230 (1045)
                      -.|+.. -.|.|.+++  |++||.|++||+|++|+...                                          
T Consensus        66 ~~l~a~-vsG~V~~v~--v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~  142 (397)
T PRK15030         66 AEVRPQ-VSGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQE  142 (397)
T ss_pred             EEEEec-CcEEEEEEE--cCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence            344444 349999999  99999999999999997521                                          


Q ss_pred             -----------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCe--EEEEE
Q psy6394         231 -----------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP--LLDIE  264 (1045)
Q Consensus       231 -----------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~--l~~i~  264 (1045)
                                                   ....|.||+||+|.+.++++|+.|..|++  |+.|.
T Consensus       143 ~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~  207 (397)
T PRK15030        143 YDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ  207 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEE
Confidence                                         11378899999999999999999999985  66664

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=95.95  E-value=0.016  Score=68.03  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=55.6

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  +++||.|++||+|+.+++.-                                                 
T Consensus        70 v~G~V~~v~--v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~  147 (385)
T PRK09578         70 VAGIVTART--YEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVAD  147 (385)
T ss_pred             CcEEEEEEE--CCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            458999999  99999999999999998741                                                 


Q ss_pred             ----------------------eeeEEecCCCEEEEEEeeCCCCEEecC--CceEEEeec
Q psy6394         491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEVE  526 (1045)
Q Consensus       491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg--~~l~~i~~~  526 (1045)
                                            ....|.||++|+|.+.++++|+.|..|  ++|+.|...
T Consensus       148 ~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~  207 (385)
T PRK09578        148 ERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence                                  124799999999999999999999986  588888643

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=95.91  E-value=0.019  Score=67.45  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=31.8

Q ss_pred             eEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ..|.||++|+|..+.+++|+.|..|++|+.|....
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~  250 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT  250 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence            47999999999999999999999999999996543

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=95.89  E-value=0.018  Score=67.18  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             EEeCCCCeEEEEEeeCCCCeecCCC---eEEEEEe
Q psy6394         234 TITSRYKGTVRKVYYGEGDVALVGK---PLLDIEV  265 (1045)
Q Consensus       234 ~i~s~~~G~v~~i~~~~g~~v~vG~---~l~~i~~  265 (1045)
                      .|.||+||+|..+.+..|+.|..|+   +|+.|..
T Consensus       185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~  219 (370)
T PRK11578        185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD  219 (370)
T ss_pred             EEECCCCcEEEeeecCCCcEeecccCCceEEEEec
Confidence            7999999999999999999997764   6888753

>PRK12784 hypothetical protein; Provisional

Probab=95.89  E-value=0.038  Score=48.79  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEc-CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      -.|+|-+.+  +.+++.|-+-+.|+-|++ |..-..|.--.+|.|.-+.+.+||.+..+..|+.++.
T Consensus        12 ~~G~Vekif--i~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed   76 (84)
T PRK12784         12 YEGKVEEIF--VNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED   76 (84)
T ss_pred             cccEEEEEE--EcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence            368999999  999999999999999999 6777789999999999999999999999999999973

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=95.88  E-value=0.015  Score=66.75  Aligned_cols=35  Identities=11%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             eeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       492 ~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ...|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus       203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~  237 (331)
T PRK03598        203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT  237 (331)
T ss_pred             cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence            35799999999999999999999999999999643

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=95.84  E-value=0.016  Score=68.81  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=53.7

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  230 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  230 (1045)
                      ..|.|.+++  +++||.|++||+|++|....                                                 
T Consensus        94 vsG~V~~i~--v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~  171 (415)
T PRK11556         94 VDGQLMALH--FQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQAL  171 (415)
T ss_pred             ccEEEEEEE--CCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence            469999999  99999999999999996521                                                 


Q ss_pred             ----------------------ceeEEeCCCCeEEEEEeeCCCCeecCCC--eEEEEE
Q psy6394         231 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIE  264 (1045)
Q Consensus       231 ----------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~--~l~~i~  264 (1045)
                                            ....|.||++|+|..+.+.+|+.|..|+  +|+.|.
T Consensus       172 ~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~  229 (415)
T PRK11556        172 VSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT  229 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence                                  0237999999999999999999999984  677764

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=95.71  E-value=0.014  Score=57.23  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe------ecCC-CeEE
Q psy6394         189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV------ALVG-KPLL  261 (1045)
Q Consensus       189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~------v~vG-~~l~  261 (1045)
                      .|-|-+.+..+ =|.|+-.. ..++|+.|++|+.++.||+-|+..+|.||.+|+|.++.-..-+.      -+.| ..|+
T Consensus        27 tvGiT~~aq~~-lGdiv~Ve-lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~  104 (131)
T COG0509          27 TVGITDYAQDQ-LGDIVFVE-LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIV  104 (131)
T ss_pred             EEeCCHHHHHh-cCCEEEEE-cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEE
Confidence            44444443332 25565554 36789999999999999999999999999999999886554433      2355 4777


Q ss_pred             EEEecC
Q psy6394         262 DIEVED  267 (1045)
Q Consensus       262 ~i~~~~  267 (1045)
                      .|...+
T Consensus       105 klk~~d  110 (131)
T COG0509         105 KLKPAD  110 (131)
T ss_pred             EEeeCC
Confidence            776443

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=95.66  E-value=0.026  Score=66.30  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=55.3

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  +++||.|++||+|++++..-                                                 
T Consensus        68 v~G~V~~i~--v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~  145 (385)
T PRK09859         68 VGGIIIKRN--FIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQ  145 (385)
T ss_pred             CcEEEEEEE--cCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence            358999999  99999999999999998630                                                 


Q ss_pred             ----------------------eeeEEecCCCEEEEEEeeCCCCEEecCC--ceEEEeec
Q psy6394         491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIEVE  526 (1045)
Q Consensus       491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~--~l~~i~~~  526 (1045)
                                            ....|.||++|+|.+.++.+|+.|..|+  +|+.|...
T Consensus       146 ~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  205 (385)
T PRK09859        146 LNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence                                  1247999999999999999999999985  68877543

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=95.51  E-value=0.013  Score=66.64  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=26.0

Q ss_pred             EeCCCCeEEE-------------------------EEeeCCCCeecCCCeEEEEEec
Q psy6394         235 ITSRYKGTVR-------------------------KVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       235 i~s~~~G~v~-------------------------~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      |.||++|+|.                         ++.+.+|+.|..|++|+.|-..
T Consensus       137 i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~~  193 (328)
T PF12700_consen  137 IKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIADL  193 (328)
T ss_dssp             EE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEEE
T ss_pred             cccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeeccC
Confidence            9999999999                         9999999999999999999643

...

>PRK12784 hypothetical protein; Provisional

Probab=95.51  E-value=0.063  Score=47.45  Aligned_cols=63  Identities=17%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEec-cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      .|+|.+.+  +.+++.|-+-++|+.|++ |+.-..|.--.+|.|..+.+.+||.+..+..|++++.
T Consensus        13 ~G~Vekif--i~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed   76 (84)
T PRK12784         13 EGKVEEIF--VNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED   76 (84)
T ss_pred             ccEEEEEE--EcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence            58899999  999999999999999999 5556668888999999999999999999999999974

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=95.45  E-value=0.025  Score=55.51  Aligned_cols=45  Identities=27%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      |.|+.+. =.++|+.+++|++++.||+.|+..++.||++|+|.+++
T Consensus        31 G~i~~v~-lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVE-LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE--B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEE-EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            3344443 14679999999999999999999999999999999986

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=95.43  E-value=0.039  Score=65.03  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=53.7

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccc--------------------------------------------------
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDK--------------------------------------------------  490 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK--------------------------------------------------  490 (1045)
                      .|.|.+++  +++||.|++||+|++|+...                                                  
T Consensus        73 sG~V~~v~--v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~  150 (397)
T PRK15030         73 SGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADA  150 (397)
T ss_pred             cEEEEEEE--cCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence            58999999  99999999999999998531                                                  


Q ss_pred             ---------------------eeeEEecCCCEEEEEEeeCCCCEEecCCc--eEEEee
Q psy6394         491 ---------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP--LLDIEV  525 (1045)
Q Consensus       491 ---------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~--l~~i~~  525 (1045)
                                           ....|.||++|+|.+.++++|+.|..|++  |+.|..
T Consensus       151 ~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  208 (397)
T PRK15030        151 QQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ  208 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence                                 12468899999999999999999999985  666643

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=95.35  E-value=0.21  Score=53.55  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=75.5

Q ss_pred             ccccCCcceEEEEecC-CceeeeeecccCCCCHHHHHHHHHHHHhhhhcC-CCCccc-cCCCceeeecCCCCCCccee-e
Q psy6394         901 ILVNPDHNISIAIDTK-HGLVVPNIKSVNKLSLLDITRELLRIQGCSHEG-KVLPRD-IQGGTISMSNVGNVGGTLVQ-P  976 (1045)
Q Consensus       901 ile~p~v~Igiav~~~-~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g-~l~~~d-~~ggTftiSNlG~~g~~~~~-~  976 (1045)
                      ++++..++.+..|-.+ ++...-+.- --.-++.+..+...+.++++++. .+.+.. .....|-+|++=-+.-+.++ +
T Consensus        78 v~~~d~i~ps~Tv~~~~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~  156 (206)
T PF00302_consen   78 VVYYDRIDPSYTVFHKDDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHP  156 (206)
T ss_dssp             EEEESS-EEEEEEEETTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEE
T ss_pred             EEEECCcceeeeEEeCCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceeccccccc
Confidence            3556667777777653 443322211 13447889999999888888774 455443 44567888877655544432 2


Q ss_pred             eecCC--ceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHH
Q psy6394         977 IIVPR--QVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWK 1033 (1045)
Q Consensus       977 iin~p--q~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k 1033 (1045)
                      +-+.+  -..++..|+..++    +|     |-+|+|++.+-|.++||.++++|++.|.
T Consensus       157 ~~~~~~~~~P~it~GK~~~~----~g-----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ  206 (206)
T PF00302_consen  157 VPNGKDDSIPRITWGKYFEE----NG-----RLLMPVSIQVHHALVDGYHVGQFFEELQ  206 (206)
T ss_dssp             ESSTTT-SS-EEEEE--EEE----TT-----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred             ccCCCcccccEEEeeeeEeE----CC-----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence            22222  2578999998752    33     5789999999999999999999999874

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=95.28  E-value=0.21  Score=53.99  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=68.4

Q ss_pred             CCCHHHHHHHHHHHHhhhhcC-CCCccccCCCceeeecCCCCCCcce-eeeecCC--ceeEEEecceeEEeEEecCceEE
Q psy6394         929 KLSLLDITRELLRIQGCSHEG-KVLPRDIQGGTISMSNVGNVGGTLV-QPIIVPR--QVCIVAFGKIQLLPRFDAEMRVV 1004 (1045)
Q Consensus       929 ~~sl~~ia~~~~~l~~~a~~g-~l~~~d~~ggTftiSNlG~~g~~~~-~~iin~p--q~ail~vG~i~~~pv~~~~~~~~ 1004 (1045)
                      .-++.+..+...+.++++++. .+-+.....-.|-||.+=-+.-+.+ .++-+..  ...|+..|+..+    ++|    
T Consensus       110 ~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~----~~g----  181 (219)
T PRK13757        110 HDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT----QGD----  181 (219)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEE----ECC----
Confidence            345566767777777778775 4545444556777776533322221 2222222  235788998764    233    


Q ss_pred             EEEEEEeeecccccccChHHHHHHHHHHHHhhcC
Q psy6394        1005 AKCILNVTWAADHRVVDGATVARAATLWKSLVEN 1038 (1045)
Q Consensus      1005 ~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~ 1038 (1045)
                       |-+|+|++.+-|.++||.++++|++.|.+++.+
T Consensus       182 -r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~  214 (219)
T PRK13757        182 -KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE  214 (219)
T ss_pred             -EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence             579999999999999999999999999999876

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=95.26  E-value=0.039  Score=63.09  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=27.8

Q ss_pred             EEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         234 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       234 ~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .|.||+||+|..+.+.+|+.|.. ++|+.|..
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~  236 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGD  236 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEec
Confidence            68899999999999999999986 88888864

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=95.13  E-value=0.04  Score=65.41  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  +++||.|++||+|++|....                                                 
T Consensus        94 vsG~V~~i~--v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~  171 (415)
T PRK11556         94 VDGQLMALH--FQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQAL  171 (415)
T ss_pred             ccEEEEEEE--CCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence            468999999  99999999999999996531                                                 


Q ss_pred             ----------------------eeeEEecCCCEEEEEEeeCCCCEEecCC--ceEEEe
Q psy6394         491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIE  524 (1045)
Q Consensus       491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~--~l~~i~  524 (1045)
                                            ....|.||++|+|..+.++.|+.|..|+  +|+.|.
T Consensus       172 ~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~  229 (415)
T PRK11556        172 VSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT  229 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence                                  0237999999999999999999999985  566664

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=95.11  E-value=0.05  Score=63.45  Aligned_cols=32  Identities=16%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             EEecCCCEEEEEEeeCCCCEEecCC---ceEEEee
Q psy6394         494 TITSRYKGTVRKVYYGEGDVALVGK---PLLDIEV  525 (1045)
Q Consensus       494 ei~ap~~G~v~~i~~~~G~~v~vg~---~l~~i~~  525 (1045)
                      .|.||++|+|..+.+..|+.|..|+   +|+.|..
T Consensus       185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~  219 (370)
T PRK11578        185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD  219 (370)
T ss_pred             EEECCCCcEEEeeecCCCcEeecccCCceEEEEec
Confidence            7999999999999999999997764   6887754

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=94.90  E-value=0.028  Score=55.26  Aligned_cols=37  Identities=27%  Similarity=0.271  Sum_probs=34.9

Q ss_pred             cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      .++|++|++|+.++.||+-|+..+|.||.+|.|.+++
T Consensus        47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            5788999999999999999999999999999998885

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.51  E-value=0.099  Score=57.17  Aligned_cols=58  Identities=22%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCc
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE  528 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~  528 (1045)
                      +.+..  ++.||.|++||+|+.|+.    .+|.||.+|+|..+. ++|-.|..|--|+.|+...+
T Consensus       174 i~~~~--~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli-rdG~~V~~G~Ki~dIDPR~~  231 (256)
T TIGR03309       174 IVTPT--KAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI-HEGLTVTEGLKIGDVDPRGE  231 (256)
T ss_pred             EEeec--cCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe-cCCCCcCCCCEEEEECCCCC
Confidence            44557  999999999999999975    799999999998885 99999999999999986653

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors

Probab=94.32  E-value=0.092  Score=50.57  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             cHHHHHHhhcCCC-C-c-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHH-HHHHHhc
Q psy6394           3 NVLSVSRSLRSIC-K-T-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEV-LLDTILG   78 (1045)
Q Consensus         3 ~~~~~~~~~~s~~-~-~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~-~l~~il~   78 (1045)
                      +++.+..|..... . . |+|+|....+.                +++|+..+||+...+.........+.. +..+.++
T Consensus        12 vll~i~~h~~r~~~~~v~G~LlG~~~~~~----------------~v~I~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~   75 (114)
T PF01398_consen   12 VLLKIIDHATRSSPNEVIGLLLGTQDGDN----------------TVEITNSFPVPHSESEDDCDMDDEDFQKKMIELLK   75 (114)
T ss_dssp             HHHHHHHHHHHHHCTEEEEEEEEEEETT-----------------EEEEEEEEEESEEEESSEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEEEEEEecCce----------------EEEEEEEEEeeEecCccccccchhhHHHHHHhhhc
Confidence            3556666665533 4 3 99999876543                677888888875432222122222222 3333433


Q ss_pred             cC--CCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394          79 EF--KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF  113 (1045)
Q Consensus        79 ~~--~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~  113 (1045)
                      ..  +-.+||||.=--+..--||-.+.-+|++++.+.
T Consensus        76 ~~~~~~~iVGWY~s~p~~~~~~S~~di~~q~~~q~~~  112 (114)
T PF01398_consen   76 KVNPNLEIVGWYHSHPNISCFPSPTDIETQKQYQRMN  112 (114)
T ss_dssp             HCSTTSEEEEEEEEESSS-SS--HHHHHHHHHHHHHT
T ss_pred             cccccceEEEEEEccCCccccCCHHHHHHHHHHHHhC
Confidence            32  356999999887777888999999998887764

This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.

>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

Probab=94.07  E-value=0.28  Score=50.23  Aligned_cols=104  Identities=19%  Similarity=0.276  Sum_probs=62.4

Q ss_pred             cHHHHHHhhcCCC----Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHHHHh
Q psy6394           3 NVLSVSRSLRSIC----KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTIL   77 (1045)
Q Consensus         3 ~~~~~~~~~~s~~----~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il   77 (1045)
                      +++.+..|.....    .. |.|||...                 ..+++|++.+||+.-.   -+..-.++.+-+++.+
T Consensus         7 vll~I~dh~~R~~~~~~~v~G~LlG~~~-----------------~~~veV~nsF~lp~~~---~~~~~~~d~~y~~~m~   66 (157)
T cd08057           7 VLLNISDHYTRRKYGIKRVIGVLLGYVD-----------------GDKIEVTNSFELPFDE---EEESIFIDTEYLEKRY   66 (157)
T ss_pred             HHhhHHHHHHhccCCCCeEEEEEEeEEe-----------------CCEEEEEEeEEccccC---CCcchhhhHHHHHHHH
Confidence            3555665543332    33 99999762                 2357788999998311   0111145655555444


Q ss_pred             ccCC-----CceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394          78 GEFK-----ADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV  130 (1045)
Q Consensus        78 ~~~~-----k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~  130 (1045)
                      .-.+     ..+||||.--.+...-++-.+..||.+|...    .....+++++.++.
T Consensus        67 ~~~~~v~~~~~vVGWY~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~v~L~~D~~~  120 (157)
T cd08057          67 NLHKKVYPQEKIVGWYSIGSNNSNEISKSDNSLHSQFSLI----SEENPLILILDPSL  120 (157)
T ss_pred             HHHHHhCCCCCEEEEEeecCCCCCCCChhHHHHHHHHHhc----cCCCCEEEEEcCCc
Confidence            4332     4599999877654445677889999777765    12334677777654

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.01  E-value=0.16  Score=55.68  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  267 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~  267 (1045)
                      +..  ++.||.|++||+|+.|..    .+|.||.+|+|.-+ +++|-.|..|.-|+.|+.-+
T Consensus       176 ~~~--~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       176 TPT--KAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG  230 (256)
T ss_pred             eec--cCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence            446  999999999999999975    79999999999665 67999999999999998544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=93.21  E-value=0.19  Score=55.40  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .+.|.||+||+|..+.+.+|+.|..|++|+.|..
T Consensus        88 ~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~  121 (265)
T TIGR00999        88 YVEVRSPFDGYITQKSVTLGDYVAPQAELFRVAD  121 (265)
T ss_pred             eEEEECCCCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence            3468999999999999999999999999999863

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=92.71  E-value=0.14  Score=48.53  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             EEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeC
Q psy6394         205 KEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG  249 (1045)
Q Consensus       205 ~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~  249 (1045)
                      .+-.  |++||+|++||.|++.+. -....|-|+.+|+|.+|.-.
T Consensus        42 ~~p~--V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~   83 (101)
T PF13375_consen   42 AEPV--VKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR   83 (101)
T ss_pred             ceEE--EcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence            3456  999999999999999974 66889999999999998543

>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase

Probab=92.49  E-value=0.73  Score=48.73  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             HHHHHHhhcCCCCc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCcc---HHHHHHHhc
Q psy6394           4 VLSVSRSLRSICKT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLN---EVLLDTILG   78 (1045)
Q Consensus         4 ~~~~~~~~~s~~~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~---~~~l~~il~   78 (1045)
                      ++.+..|..+...+  |+|+|....         +      ...+.|+..+||.... .  .-...++   ..++.+.+.
T Consensus        14 ll~m~~Ha~~~~~EvcGlL~G~~d~---------~------~~~l~Vt~~~p~~~~~-~--~~~~e~dp~~q~e~~~~l~   75 (187)
T cd08067          14 LLLMDFHCHLTTSEVIGYLGGTWDP---------N------TQNLTILQAFPCRSRL-T--GLDCEMDPVSETEIRESLE   75 (187)
T ss_pred             HHHHHHHhcCCCcEEEEEEEeEEcC---------C------CCeEEEEEEEecCCCC-C--CcccccCHHHHHHHHHHHH
Confidence            34444444444455  999998421         1      2245678999998643 1  1112222   345556677


Q ss_pred             cCCCceeEEEEeecccccccchhhHHHHhhhhhhhhc--CCcccEEEEEeeccc
Q psy6394          79 EFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSH--IPKQLFLFFRISTNV  130 (1045)
Q Consensus        79 ~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~--~~~~~~~~~l~t~~~  130 (1045)
                      ++.-++||||.---...-.||.++.--+.++|.++..  -....|+.+.+.+-.
T Consensus        76 ~~gl~vVGwYHSHP~~~~~pS~~Di~tQ~~yQ~~~~~~~~~~~p~v~~I~~P~~  129 (187)
T cd08067          76 SRGLSVVGWYHSHPTFPPNPSLRDIDTQLDYQIMFKGSDSGYEPCVGLICSPYD  129 (187)
T ss_pred             HcCCEEEEEEecCCCCCcCCCHHHHHHHHHHHhhccccccCCCCeEEEEEcccc
Confidence            7777899999998888899999997777666776642  345667777776544

This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=92.30  E-value=0.37  Score=56.16  Aligned_cols=59  Identities=17%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .|-+.+++  +++||.|++||+|++|=.    +....+|.||.+|+|.-+  ...-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~--~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYR--AAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEe--cCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence            46778888  999999999999999843    455666899999998654  445578888888876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.20  E-value=0.45  Score=53.72  Aligned_cols=58  Identities=12%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEc--CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      +-+.++.  ++.||.|++||+|++|-.  .....+|.||.+|+|.-+  ...-.|..|+.|+.|
T Consensus       227 ~G~~~~~--~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSL--VKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI  286 (287)
T ss_pred             CeEEEEe--cCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence            4566778  999999999999999954  233478999999999544  445568888888865

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=92.17  E-value=0.2  Score=47.61  Aligned_cols=43  Identities=23%  Similarity=0.220  Sum_probs=37.4

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      |.-.+-+  |++||.|++||.|++.+. -....|.||.+|+|.+|.
T Consensus        39 G~~~~p~--V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   39 GAPAEPV--VKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             CCcceEE--EcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence            4455677  999999999999999975 668899999999999985

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=91.82  E-value=0.51  Score=53.55  Aligned_cols=59  Identities=15%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc---CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .+-+.+.+  +++||.|++||+|++|=.   +....+|.||.+|+|.-+.  ..-.|..|+.|+.|
T Consensus       236 ~~Gl~~~~--~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i  297 (298)
T cd06253         236 TSGIFVPA--KHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI  297 (298)
T ss_pred             CCeEEEEC--cCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence            35667777  999999999999999843   5678899999999996654  44578889988876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains

Probab=91.02  E-value=1.4  Score=42.03  Aligned_cols=98  Identities=19%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             HHHHhhcCC-C-Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHH---HHHhcc
Q psy6394           6 SVSRSLRSI-C-KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLL---DTILGE   79 (1045)
Q Consensus         6 ~~~~~~~s~-~-~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l---~~il~~   79 (1045)
                      .++++..++ . .. |+|+|....            +     ++.|...+++++..     .....+...+   ......
T Consensus         3 ~il~~a~~~~~~ev~G~L~G~~~~------------~-----~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   60 (116)
T cd07767           3 MFLDAAKSINGKEVIGLLYGSKTK------------K-----VLDVDEVIAVPFDE-----GDKDDNVWFLMYLDFKKLN   60 (116)
T ss_pred             hHHHHHhcCCCcEEEEEeEEEEcC------------C-----EEEEEEEEecccCC-----CCCccHHHHHHHHHHHHhc
Confidence            567777775 3 44 999997321            1     34455666665322     1112222222   222223


Q ss_pred             CCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394          80 FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV  130 (1045)
Q Consensus        80 ~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~  130 (1045)
                      ..-.+||||.-.-+..-.+|..+...|..++..   .++  .+++++....
T Consensus        61 ~~~~iVGwyhshp~~~~~~s~~dv~~~~~~q~~---~~~--~v~li~~~~~  106 (116)
T cd07767          61 AGLRIVGWYHTHPKPSCFLSPNDLATHELFQRY---FPE--KVMIIVDVKP  106 (116)
T ss_pred             CCCeEEEEEEcCCCCCCccCHHHHHHHHHHHHh---CCC--CEEEEEECCC
Confidence            345799999987777778999998888655543   333  3555555444

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J

>smart00232 JAB_MPN JAB/MPN domain

Probab=90.40  E-value=2.2  Score=41.78  Aligned_cols=89  Identities=15%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             cHHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC-CccHH---HHHH
Q psy6394           3 NVLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG-TLNEV---LLDT   75 (1045)
Q Consensus         3 ~~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g-~i~~~---~l~~   75 (1045)
                      ++..++.+..+.. .+  |+|+|.....                 .+.|...+||+...   -+..- .++.+   .+.+
T Consensus         8 v~~~i~~h~~~~~p~e~~G~L~G~~~~~-----------------~~~i~~~~~~p~~~---~~~~~~~~~~~~~~~~~~   67 (135)
T smart00232        8 VPLNILKHAIRDGPEEVCGVLLGKSNKD-----------------RPEVKEVFAVPNEP---QDDSVQEYDEDYSHLMDE   67 (135)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEEEEEcCC-----------------EEEEEEEEecCcCC---CCcchhhhhhhHHHHHHH
Confidence            3455666776655 33  9999984321                 25566777776321   11110 22322   2222


Q ss_pred             Hhcc--CCCceeEEEEeecccccccchhhHHHHhhhhh
Q psy6394          76 ILGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSN  111 (1045)
Q Consensus        76 il~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~  111 (1045)
                      .+..  ..-++||||.-.-+....||.++..+|..+..
T Consensus        68 ~~~~~~~~~~~vGwyhshp~~~~~pS~~D~~~~~~~~~  105 (135)
T smart00232       68 ELKKVNKDLEIVGWYHSHPDESPFPSEVDVATHESYQA  105 (135)
T ss_pred             HHHhhCCCceEEEEEEcCCCCCCCcCHHHHHHHHHHHh
Confidence            2222  23469999999999999999999999955443

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.

>PLN03246 26S proteasome regulatory subunit; Provisional

Probab=90.16  E-value=0.72  Score=52.40  Aligned_cols=87  Identities=25%  Similarity=0.410  Sum_probs=49.3

Q ss_pred             cHHHHHHhhcCCC-----Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC--CccHHHHH
Q psy6394           3 NVLSVSRSLRSIC-----KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG--TLNEVLLD   74 (1045)
Q Consensus         3 ~~~~~~~~~~s~~-----~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g--~i~~~~l~   74 (1045)
                      +++++..|.....     .. |-|||...            +     ..|+|++.+||+--.  --+..+  .+|.+-++
T Consensus        14 Vll~I~dh~~R~~~~~~~rviG~LLG~~~------------~-----~~ieItnsF~~p~~e--~~~~~~~~~~D~~y~~   74 (303)
T PLN03246         14 VLLSIVDHYNRVAKDTRKRVVGVLLGSSF------------R-----GRVDVTNSFAVPFEE--DDKDPSIWFLDHNYLE   74 (303)
T ss_pred             HHHHHHHHHHhccCCCCCeeEEEEEeeec------------C-----CEEEEEeccccCccc--CCCCccceeecHHHHH
Confidence            4556666554332     24 99999742            1     267899999998210  011111  26654444


Q ss_pred             HHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhh
Q psy6394          75 TILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNY  112 (1045)
Q Consensus        75 ~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~  112 (1045)
                      +.+.-.     +..+||||.=-    ..++=.+..||+.|...
T Consensus        75 ~m~~~~k~V~~~~~vVGWY~tg----~~i~~~d~~IH~~~~~~  113 (303)
T PLN03246         75 SMFGMFKRINAKEHVVGWYSTG----PKLRENDLDIHELFNDY  113 (303)
T ss_pred             HHHHHHHHhCCCCcEEeeecCC----CCCCcchHHHHHHHHhh
Confidence            433332     24599999733    33444678999766654

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=89.61  E-value=0.91  Score=52.19  Aligned_cols=59  Identities=15%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .+-+....  ++.||.|++||+|++|=.    .....+|.||.+|+|.-+..  .-.|..|+.|+.|
T Consensus       262 ~~Gi~~~~--v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~--~~~V~~Gd~l~~i  324 (325)
T TIGR02994       262 DDGLIEFM--IDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHF--PGLIKSGDCIAVL  324 (325)
T ss_pred             CCeEEEEe--cCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeC--CCccCCCCEEEEe
Confidence            35566777  999999999999999843    34577899999999977543  4568888888875

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

Probab=89.56  E-value=1.1  Score=50.31  Aligned_cols=98  Identities=23%  Similarity=0.355  Sum_probs=54.7

Q ss_pred             cHHHHHHhhcCC-----CCc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccC--CCCccHHHHH
Q psy6394           3 NVLSVSRSLRSI-----CKT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSK--DGTLNEVLLD   74 (1045)
Q Consensus         3 ~~~~~~~~~~s~-----~~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~--~g~i~~~~l~   74 (1045)
                      +++++..|....     ... |.|||...                 ..+++|++.++|+.-.  --+.  ...+|.+-+.
T Consensus         9 VLl~I~dh~~R~~~~~~~~ViG~LLG~~~-----------------~~~veItnsF~~p~~~--~~~~~~~~~~d~~y~~   69 (280)
T cd08062           9 VLLSVVDHYNRVAKGTSKRVVGVLLGSWK-----------------KGVLDVTNSFAVPFEE--DEKDPSVWFLDHNYLE   69 (280)
T ss_pred             HHHHHHHHHhhhcCCCCceEEEEEEEEEe-----------------CCEEEEEEeeecCccC--CCCCcchhhhhHHHHH
Confidence            466777776432     134 99999754                 1367888999998211  0001  1135555554


Q ss_pred             HHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeec
Q psy6394          75 TILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRIST  128 (1045)
Q Consensus        75 ~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~  128 (1045)
                      +.+.-.     +..+||||.--.    .++=.+..||+.|+..-   ++  .+|+++.+
T Consensus        70 ~m~~~~kkv~~~e~vVGWY~tg~----~~~~~d~~ih~~~~~~~---~~--pv~l~vd~  119 (280)
T cd08062          70 NMYGMFKKVNAKEKIVGWYSTGP----KLRPNDLDINELFRRYC---PN--PVLVIIDV  119 (280)
T ss_pred             HHHHHHHHhCCCCCeEEEecCCC----CCCcchHHHHHHHHHhC---CC--CEEEEEec
Confidence            443322     245999997442    23445679996665533   22  34555554

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.

>COG3608 Predicted deacylase [General function prediction only]

Probab=89.46  E-value=0.64  Score=52.94  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=46.7

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEc---CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      .++-+++.+  |+.||.|++||+|+.|=.   -+..+||.|+.+|+|..+...  -.++.|+.++.+
T Consensus       262 p~~G~v~~~--v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~--~~v~~Gdl~~~v  324 (331)
T COG3608         262 PAGGLVEFL--VDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL--RLVQPGDLLKVV  324 (331)
T ss_pred             CCCceEEEe--ecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec--cccCCCCeeeee
Confidence            467788999  999999999999998855   589999999999999877532  134455555444

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=89.46  E-value=1  Score=51.12  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=47.9

Q ss_pred             EEEEeeeccCCCCeeccCCeEeEEec---cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         463 NIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       463 ~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      =+...+  ++.||.|++||.|++|=.   +....++.||.+|+|..+  ...-.|..|+.|+.|
T Consensus       238 Gl~~~~--~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p~v~~G~~l~~i  297 (298)
T cd06253         238 GIFVPA--KHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYPLVYEGSLVARI  297 (298)
T ss_pred             eEEEEC--cCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCCeecCCceEEEe
Confidence            377888  999999999999999854   566789999999999776  466778888888875

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=89.09  E-value=0.58  Score=44.09  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=29.7

Q ss_pred             EEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         234 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       234 ~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      +|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            478999999999999999999999999999744

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=88.85  E-value=1.4  Score=50.54  Aligned_cols=60  Identities=13%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .+-+....  ++.||.|++||+|++|=.    .....+|.||.+|+|.-+..  .-.|..|++|+.|-
T Consensus       251 ~~G~~~~~--~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~--~~~v~~G~~l~~i~  314 (316)
T cd06252         251 HPGLFEPL--VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRP--PGLVRRGDCLAVLA  314 (316)
T ss_pred             CCeEEEEe--cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeC--CCccCCCCEEEEEe
Confidence            35677888  999999999999999854    34567899999999975543  34578888888773

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic

Probab=88.67  E-value=3  Score=40.62  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=62.3

Q ss_pred             cHHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHHHHh--
Q psy6394           3 NVLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTIL--   77 (1045)
Q Consensus         3 ~~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il--   77 (1045)
                      +++.+..|..+.. .+  |+|+|....+            ......++|....||+..    .+  +   .+-++.++  
T Consensus         2 ~~~~i~~ha~~~~p~E~cGlL~G~~~~~------------~~~~~~~~v~~~~p~~~~----~~--~---~~~~~~~~~~   60 (119)
T cd08058           2 ALLKMLQHAESNTGIEVMGLLCGELTHN------------EFTDKHVIVPKQSAGPDS----CT--G---ENVEELFNVQ   60 (119)
T ss_pred             HHHHHHHHhcCCCCeEEEEEeeeEEecC------------ccceeEEEEeecCCCCCC----ch--h---HHHHHHHHHH
Confidence            3556667777764 33  9999986322            112345567777787731    22  1   22233333  


Q ss_pred             ccCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394          78 GEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV  130 (1045)
Q Consensus        78 ~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~  130 (1045)
                      .+...++||||.---...-.||-++...+.+++..   +  +.++++.+.+..
T Consensus        61 ~~~g~~~vG~YHSHP~~~~~pS~~Di~~~~~~q~~---~--p~~~~lI~s~~~  108 (119)
T cd08058          61 TGRPLLVVGWYHSHPTFTAWLSSVDIHTQASYQLM---L--PEAIAIVVSPKH  108 (119)
T ss_pred             hCCCCeEEEEEecCCCCCCccCHHHHHHHHHHhcc---C--CCeEEEEECcCC
Confidence            44457799999999888889999997766444333   2  455666666533

This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=88.66  E-value=1.2  Score=50.39  Aligned_cols=56  Identities=13%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEec--cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      +.++.  ++.||.|++||+|++|-.  .....+|.||.+|+|..+  ...-.|..|+.++.|
T Consensus       229 ~~~~~--~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i  286 (287)
T cd06251         229 LLRSL--VKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI  286 (287)
T ss_pred             EEEEe--cCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence            56778  999999999999999954  233478999999999665  455667777777765

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=88.48  E-value=0.62  Score=51.29  Aligned_cols=40  Identities=38%  Similarity=0.483  Sum_probs=34.0

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCc--eeEEeCCCCeEEEEEeeCC
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKA--SVTITSRYKGTVRKVYYGE  250 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa--~~~i~s~~~G~v~~i~~~~  250 (1045)
                      +.+  |+|||+|+.||+|++   ||-  .+-+.||.+|+|.+|..-+
T Consensus        42 km~--VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~   83 (257)
T PF05896_consen   42 KML--VKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE   83 (257)
T ss_pred             cEE--eccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence            556  999999999999998   665  4668899999999998743

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=87.51  E-value=0.51  Score=52.96  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=24.5

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ..|.++..|+|.+|+|++|+.|+.|++|+.|+..
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~   35 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT   35 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence            5789999999999999999999999999999843

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=87.30  E-value=1.5  Score=51.15  Aligned_cols=58  Identities=17%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      +=+.+++  ++.||.|++||.|++|-.    +....+|.||.+|+|..+  ...-.|..|+.|+.|
T Consensus       297 ~Gl~~~~--~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I  358 (359)
T cd06250         297 GGMVVYR--AAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI  358 (359)
T ss_pred             CeEEEEe--cCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence            3478888  999999999999999854    344555799999999766  566778888888766

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>PF13437 HlyD_3: HlyD family secretion protein

Probab=87.12  E-value=0.82  Score=43.07  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             EEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       494 ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      +|.||++|+|..+.+++|+.+..|++|+.|...
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            478999999999999999999999999999754

>COG3608 Predicted deacylase [General function prediction only]

Probab=86.75  E-value=1.5  Score=50.03  Aligned_cols=57  Identities=18%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEec---cceeeEEecCCCEEEEEEe----eCCCC
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVY----YGEGD  512 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~ei~ap~~G~v~~i~----~~~G~  512 (1045)
                      ..-+..|.-|       +++.+  ++.||.|++||.|+.|=.   -+...||.|+.+|+|..+.    ++.||
T Consensus       256 ~~~i~Ap~~G-------~v~~~--v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gd  319 (331)
T COG3608         256 DEMIRAPAGG-------LVEFL--VDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGD  319 (331)
T ss_pred             cceeecCCCc-------eEEEe--ecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCC
Confidence            3446666654       88999  999999999999998866   4899999999999998874    45553

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=85.85  E-value=1.8  Score=49.75  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      +....  ++.||.|++||+|++|=.    .....+|.||.+|+|..+  ...-.|..|+.|+.|
T Consensus       265 i~~~~--v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~--~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       265 LIEFM--IDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR--HFPGLIKSGDCIAVL  324 (325)
T ss_pred             EEEEe--cCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE--eCCCccCCCCEEEEe
Confidence            77788  999999999999999854    335678999999999876  455667777777765

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=85.46  E-value=0.74  Score=51.62  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=24.8

Q ss_pred             eEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ..|.++..|+|.+|+|++|+.|+.|++|+.|+...
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD   36 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence            57899999999999999999999999999998643

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=85.45  E-value=1.1  Score=51.25  Aligned_cols=42  Identities=19%  Similarity=0.408  Sum_probs=35.9

Q ss_pred             EEEcCCceeEEeCCCC---eEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         225 EVESDKASVTITSRYK---GTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       225 ~vetdKa~~~i~s~~~---G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      .|+..--.+.|.++.+   |+|.+|++++||.|+.|++|+.|+..
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence            4444444668899999   99999999999999999999999854

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

Probab=85.20  E-value=1.8  Score=48.86  Aligned_cols=63  Identities=21%  Similarity=0.384  Sum_probs=39.2

Q ss_pred             EEEEeeeEeCCccccccccCCCCccHHHHHHHhccCC-----CceeEEEEeecccccccchhhHHHHhhhhhh
Q psy6394          45 TVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFK-----ADVVGWYSFTRNQDLSQSLCQLFLAHHFSNY  112 (1045)
Q Consensus        45 ~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il~~~~-----k~viGWyrfRrns~~~~s~re~~~h~~~~~~  112 (1045)
                      .++|++.++|+--.+.  +..-.+|.+-+++.+.-.+     ..+||||.=--+   -++-.+..||++|..+
T Consensus        43 ~veItnsF~~p~~~~~--~~~~~id~~y~~~m~~~~kkV~~~~~vVGWY~tg~~---~~~~~~~~Ih~~~~~~  110 (288)
T cd08063          43 EIEIENSFELKYDTNE--DGEIVLDKEFLETRLEQFKQVFKDLDFVGWYTTGPG---GPTESDLPIHKQILEI  110 (288)
T ss_pred             EEEEEEEEecccccCC--CCceeeCHHHHHHHHHHHHHhccCCceEEEEecCCC---CCCHHHHHHHHHHHhh
Confidence            4788999999821111  1223566655554443332     359999976544   2667889999887754

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=85.08  E-value=2.5  Score=48.46  Aligned_cols=57  Identities=14%  Similarity=0.096  Sum_probs=45.5

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      +....  ++.||.|++||+|++|-.    .....+|.||.+|+|.-..  ..-.|..|+.|+.|.
T Consensus       254 ~~~~~--~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~  314 (316)
T cd06252         254 LFEPL--VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA  314 (316)
T ss_pred             EEEEe--cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence            77888  999999999999999855    3556789999999997664  345577777777663

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=85.06  E-value=0.92  Score=51.45  Aligned_cols=42  Identities=26%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             eEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         222 VVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       222 ~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      .-..|+.  .+..|.++.+|.| ++++++|+.|+.|++|+.++..
T Consensus        13 ~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~   54 (328)
T PF12700_consen   13 ASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS   54 (328)
T ss_dssp             EEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred             EEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence            3455665  5788999999999 9999999999999999999854

...

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=84.93  E-value=2  Score=48.51  Aligned_cols=56  Identities=14%  Similarity=0.069  Sum_probs=41.8

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc--CCceeEEeCCCCeEEEEEeeCCCCeecCCCeE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPL  260 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l  260 (1045)
                      .+-+.+.+  ++.||.|++||+|++|=.  .....+|.||+||+|.-+...  -.|..|++|
T Consensus       230 ~~G~~~~~--~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~v~~G~~l  287 (288)
T cd06254         230 ASGLWYPF--VKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LPVRKGDPL  287 (288)
T ss_pred             CCeEEEEe--cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--CccCCCCcc
Confidence            45677888  999999999999999832  344678999999999766442  345555554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=84.17  E-value=1.7  Score=44.12  Aligned_cols=47  Identities=32%  Similarity=0.192  Sum_probs=34.3

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeE-EeCCCCeEEEEEee
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVYY  248 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~-i~s~~~G~v~~i~~  248 (1045)
                      .||..+-..  +.+||.|.+||.|+-+.|-|-++. +.||.+|+|.-+.=
T Consensus        87 veG~~v~~i--~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e  134 (150)
T PF09891_consen   87 VEGYQVYPI--VDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE  134 (150)
T ss_dssp             EESSEEEES--S-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred             ecceEEEEE--cccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence            356666667  899999999999999999999986 99999999976643

; PDB: 3D4R_D.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=83.68  E-value=1.8  Score=43.94  Aligned_cols=45  Identities=33%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeE-EecCCCEEEEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVY  507 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~e-i~ap~~G~v~~i~  507 (1045)
                      ||..+-..  +.+||.|.+||.|+-+.|-|-.+. +.||++|+|.-+.
T Consensus        88 eG~~v~~i--~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   88 EGYQVYPI--VDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             ESSEEEES--S-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             cceEEEEE--cccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            56667778  999999999999999999999887 8999999997775

; PDB: 3D4R_D.

>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family

Probab=83.24  E-value=9.9  Score=39.76  Aligned_cols=56  Identities=14%  Similarity=0.091  Sum_probs=40.8

Q ss_pred             cHHHHHHHhccCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeecc
Q psy6394          69 NEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTN  129 (1045)
Q Consensus        69 ~~~~l~~il~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~  129 (1045)
                      +.+...+.+....-.+||||.-.-++.-.||-.|...|.+++...     ..++++.+.+.
T Consensus        62 ~~~e~~~~~~~~gle~vGwyHSHP~~~~~pS~~Dv~t~~~~~~~~-----p~~~~lIvSp~  117 (173)
T cd08066          62 NEEELFDFQDQHDLITLGWIHTHPTQTCFLSSVDLHTHCSYQLML-----PEAIAIVCAPK  117 (173)
T ss_pred             CHHHHHHHHHhCCCeeEEEEeccCCCCCccCHHHHHHHHHHHhcC-----CCeEEEEECCC
Confidence            333344455566678999999999999999999999996665542     45666666653

AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al

>KOG3373|consensus

Probab=82.63  E-value=0.91  Score=45.99  Aligned_cols=42  Identities=26%  Similarity=0.223  Sum_probs=38.3

Q ss_pred             CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC
Q psy6394         211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD  252 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~  252 (1045)
                      =++|-.|.+||.++.+|+=|+.-+|.+|.+|.|.+|.-+-.+
T Consensus        88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E  129 (172)
T KOG3373|consen   88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE  129 (172)
T ss_pred             CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence            478999999999999999999999999999999999766544

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=82.21  E-value=1.6  Score=49.53  Aligned_cols=38  Identities=34%  Similarity=0.466  Sum_probs=32.9

Q ss_pred             CCCCCeecCCCeEEEEEcCCc--eeEEeCCCCeEEEEEeeCCC
Q psy6394         211 VTEGARINEFDVVCEVESDKA--SVTITSRYKGTVRKVYYGEG  251 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa--~~~i~s~~~G~v~~i~~~~g  251 (1045)
                      |++||.|++||+|+|   ||-  -+-++||.+|+|..|.-.+-
T Consensus        45 V~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~K   84 (447)
T COG1726          45 VREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEK   84 (447)
T ss_pred             eccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccc
Confidence            999999999999998   553  57899999999999986543

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.17  E-value=2.2  Score=50.37  Aligned_cols=43  Identities=21%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             EEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         224 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       224 ~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ..|........|.++.+|+|.+++|++||.|+.|++|+.++..
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~   77 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDAT   77 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccc
Confidence            4566677778899999999999999999999999999999854

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=80.58  E-value=2.1  Score=51.29  Aligned_cols=44  Identities=18%  Similarity=0.173  Sum_probs=35.9

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEee
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY  248 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~  248 (1045)
                      |.--+-.  |++||+|+.||+|++-... ..+.+.||.+|+|++|..
T Consensus        38 G~~~k~~--Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        38 GMRPKMK--VRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCceE--eCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            3334567  9999999999999986543 578899999999999953

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=80.43  E-value=2.6  Score=50.19  Aligned_cols=35  Identities=23%  Similarity=0.125  Sum_probs=32.3

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            45899999999999999999999999999999854

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=80.18  E-value=2.6  Score=50.71  Aligned_cols=38  Identities=18%  Similarity=0.213  Sum_probs=33.2

Q ss_pred             CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         229 DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       229 dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      +.-...|.++..|+|.+|+|++||.|+.|++|+.++..
T Consensus        56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence            33356788999999999999999999999999999744

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1045
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		2e-51
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		2e-37
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		2e-28
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		3e-17
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		3e-28
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-17
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		2e-23
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		6e-23
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		1e-19
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		2e-09
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		7e-19
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		3e-11
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		2e-17
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		6e-10
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		6e-17
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		4e-11
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		2e-16
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		6e-09
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		3e-16
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		3e-09
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		2e-15
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		5e-08
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		2e-15
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		3e-13
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		1e-10
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		5e-10
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		1e-08
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		2e-08
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		1e-07
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		4e-07
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		2e-05
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		5e-04
2coo_A	70	Solution Structure Of The E3_binding Domain Of Dihy		4e-05
1zwv_A	58	Solution Structure Of The Subunit Binding Domain (H		5e-05
1w85_I	49	The Crystal Structure Of Pyruvate Dehydrogenase E1		2e-04
1w3d_A	55	Nmr Structure Of The Peripheral-Subunit Binding Dom		2e-04
1w4g_A	47	Peripheral-Subunit Binding Domains From Mesophilic,		2e-04
1w4f_A	47	Peripheral-Subunit Binding Domains From Mesophilic,		3e-04
3rnm_E	58	The Crystal Structure Of The Subunit Binding Of Hum		3e-04
2pdd_A	43	The High Resolution Structure Of The Peripheral Sub		4e-04
2pde_A	43	The High Resolution Structure Of The Peripheral Sub		8e-04
1ebd_C	41	Dihydrolipoamide Dehydrogenase Complexed With The B		8e-04

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/220 (43%), Positives = 148/220 (67%), Gaps = 2/220 (0%)
Query: 682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
           P++G+ K M K+M+ A  IP     +EVD T+L  ++ ++  +   +  +KL++MPFF+K
Sbjct: 35  PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLK 93
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
           A SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN+K+V    + +I  E
Sbjct: 94  AASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATE 153
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
           L R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ LPRF+
Sbjct: 154 LNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFN 213
Query: 862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
            +  +    I+NV+W+ADHR++DGATV+R + LWKS LEN
Sbjct: 214 EKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLEN 253

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/152 (46%), Positives = 107/152 (70%)
Query: 892  ATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKV 951
            A++ ++ +NI     HNI IA+DT+ GL+VPN+K+V   S+ +I  EL R+Q     G++
Sbjct: 107  ASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQL 166
Query: 952  LPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNV 1011
               D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ LPRF+ +  V    I+NV
Sbjct: 167  STNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNV 226
Query: 1012 TWAADHRVVDGATVARAATLWKSLVENPALLL 1043
            +W+ADHR++DGATV+R + LWKS +ENPA +L
Sbjct: 227  SWSADHRIIDGATVSRFSNLWKSYLENPAFML 258

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 8/226 (3%)
Query: 683 IRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
           + G  + + K+M  + +T P + L +E D T+L   + +  A+  EK  +KLT++P+ +K
Sbjct: 19  MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFLPYVVK 77
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
           AL   + E+P+LN SID   E I+    +NI IA DT  GL+VP IK  ++  +  + +E
Sbjct: 78  ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 137
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF- 860
           +  +   + +GK+ P +++G + +++N+G+ GG    P+I   +V I+  G+I   P   
Sbjct: 138 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR 197
Query: 861 DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
           D E  IVA  +L ++ + DHR++DGAT  +A      ++ +L +P+
Sbjct: 198 DGE--IVAAPMLALSLSFDHRMIDGATAQKA---LNHIKRLLSDPE 238

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            E I+    +NI IA DT  GL+VP IK  ++  +  + +E+  +   + +GK+ P +++G
Sbjct: 98   EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 157
Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRF-DAEMRVVAKCILNVTWAADH 1017
             + +++N+G+ GG    P+I   +V I+  G+I   P   D E  +VA  +L ++ + DH
Sbjct: 158  ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGE--IVAAPMLALSLSFDH 215
Query: 1018 RVVDGATVARAATLWKSLVENPALLL 1043
            R++DGAT  +A    K L+ +P LLL
Sbjct: 216  RMIDGATAQKALNHIKRLLSDPELLL 241

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 683 IRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
           + G  + + K+M  + +T P + L +E D T+L   + +  A+  EK  +KLT++P+ +K
Sbjct: 203 MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFLPYVVK 261
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
           AL   + E+P+LN SID   E I+    +NI IA DT  GL+VP IK  ++  +  + +E
Sbjct: 262 ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 321
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF- 860
           +  +   + +GK+ P +++G + +++N+G+ GG    P+I   +V I+  G+I   P   
Sbjct: 322 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR 381
Query: 861 DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
           D E  IVA  +L ++ + DHR++DGAT  +A    K L
Sbjct: 382 DGE--IVAAPMLALSLSFDHRMIDGATAQKALNHIKRL 417

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            E I+    +NI IA DT  GL+VP IK  ++  +  + +E+  +   + +GK+ P +++G
Sbjct: 282  EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 341
Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRF-DAEMRVVAKCILNVTWAADH 1017
             + +++N+G+ GG    P+I   +V I+  G+I   P   D E  +VA  +L ++ + DH
Sbjct: 342  ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGE--IVAAPMLALSLSFDH 399
Query: 1018 RVVDGATVARAATLWKSLVENPALLLTQ 1045
            R++DGAT  +A    K L+ +P LLL +
Sbjct: 400  RMIDGATAQKALNHIKRLLSDPELLLME 427

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score =  108 bits (270), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/78 (62%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 245
           +++QFKL+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3   QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 246 VYYGEGDVALVGKPLLDI 263
           +YY   D+A VGKPL+DI
Sbjct: 61  LYYNLDDIAYVGKPLVDI 78

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score =  106 bits (265), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
           +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3   QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 506 VYYGEGDVALVGKPLLDI 523
           +YY   D+A VGKPL+DI
Sbjct: 61  LYYNLDDIAYVGKPLVDI 78

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 4/206 (1%)
Query: 681 IPIRGYVKGMFKSMT-EANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
           IPI G  K + K M+     IP   +  EVD T L   +N V   ++++    LTY  FF
Sbjct: 21  IPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFF 80
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
           IKA++  + E P LN++     + I+ + + NISIAI     L VP IK+ ++  +  I 
Sbjct: 81  IKAVAQALKEFPQLNSTW--AGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIA 138
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
           RE+  + G +  GK+   D++GGT ++++ G+ G      II   Q  I+    I   P 
Sbjct: 139 REISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPV 198
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDG 885
              +M I  + ++N+  + DHR++DG
Sbjct: 199 IIDDM-IAVRDMVNLCLSIDHRILDG 223

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 872  LNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLS 931
            LN TWA D ++++ A +                   NISIAI     L VP IK+ ++ S
Sbjct: 94   LNSTWAGD-KIIEHANI-------------------NISIAIAAGDLLYVPVIKNADEKS 133
Query: 932  LLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKI 991
            +  I RE+  + G +  GK+   D++GGT ++++ G+ G      II   Q  I+    I
Sbjct: 134  IKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESI 193
Query: 992  QLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVE 1037
               P    +M +  + ++N+  + DHR++DG    +     K+ VE
Sbjct: 194  VKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
           +P+    K + + + EA N+   L    EV+   + D++ Q    ++++  ++L +M F+
Sbjct: 7   VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
           +KA+   +  +P +NASID   ++++ +   ++S+A+ T  GLV P ++ V+ L + DI 
Sbjct: 67  VKAVVEALKRYPEVNASID--GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
           +++  +     +GK+   D+ GG  +++N G  G  +  PII P Q  I+    I+  P 
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184
Query: 860 -FDAEMRIVAKCILNVTWAADHRVVDG-ATVARAATLWKSLEN 900
             + ++ I+    L +++  DHR++DG  +V    T+ + LE+
Sbjct: 185 AVNGQVEILPMMYLALSY--DHRLIDGRESVGFLVTIKELLED 225

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            ++S+A+ T  GLV P ++ V+ L + DI +++  +     +GK+   D+ GG  +++N G
Sbjct: 96   DVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGG 155
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPR-FDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
              G  +  PII P Q  I+    I+  P   + ++ ++    L +++  DHR++DG    
Sbjct: 156  VFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSY--DHRLIDGRESV 213
Query: 1027 RAATLWKSLVENPALLL 1043
                  K L+E+P  LL
Sbjct: 214  GFLVTIKELLEDPTRLL 230

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
           +P +   E  D T+L   +    A+  EK  +KLT +P  +KA +  + E P  N+S+ P
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
           + + ++     +I  A+DT  GL+VP I++V++  LL +  E   +   +   K+    +
Sbjct: 97  SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
           QG   ++S++G++GGT   PI+   +V I+   K  + P +D +     + +L ++ + D
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
           HRV+DGA  AR
Sbjct: 216 HRVIDGAAAAR 226

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +I  A+DT  GL+VP I++V++ SLL +  E   +   +   K+    +QG   ++S++G
Sbjct: 108  HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLG 167
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
            ++GGT   PI+   +V I+   K  + P +D +     + +L ++ + DHRV+DGA  AR
Sbjct: 168  HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVIDGAAAAR 226

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 680 VIPIRGYVKGMFKSMTEANTI-PSLRLTEEVDTTQLRDVKNQVSALYQEKFR-LKLTYMP 737
           ++ + G  + +F  MT+A  I P   + EEVD T +      VS L   K R  K+T   
Sbjct: 8   ILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSM------VSILDSAKARNRKVTVTG 61
Query: 738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLD 797
           F  + +   + ++P LNA  D T+   ++   +NI IA+DT  GL V  IK  ++  +++
Sbjct: 62  FLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVE 121
Query: 798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLL 857
           I+ E+      + E K+   ++Q  T +++NVG +GG +  PII   +V I+   +I   
Sbjct: 122 ISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRI--- 178
Query: 858 PRFDAEMRIVAKCILNVTWAADHRVVDGATVAR 890
              + E     +  + ++ + DHR++DGA   R
Sbjct: 179 --LERE----GRKYMYLSLSCDHRLIDGAVATR 205

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 907  HNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNV 966
            +NI IA+DT  GL V  IK  ++ S+++I+ E+      + E K+   ++Q  T +++NV
Sbjct: 94   YNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNV 153
Query: 967  GNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
            G +GG +  PII   +V I+   +I         +    +  + ++ + DHR++DGA   
Sbjct: 154  GTIGGIMSTPIINYPEVAILGVHRI---------LEREGRKYMYLSLSCDHRLIDGAVAT 204
Query: 1027 RAATLWKSLVENPALLLTQ 1045
            R     K ++E+P  ++ +
Sbjct: 205  RFIVDLKKVIEDPNAIIYE 223

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
           +P +   E  D T+L   +    A+  EK  +KLT +P  +KA +  + E P  N+S+ P
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
           + + ++     +I  A+DT  GL+VP I++V++  LL +  E   +   +   K+    +
Sbjct: 97  SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
           QG   +++++G++GGT   PI+   +V I+   K  + P +D +     + +L ++ + D
Sbjct: 157 QGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
           HRV++GA  AR
Sbjct: 216 HRVINGAAAAR 226

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +I  A+DT  GL+VP I++V++ SLL +  E   +   +   K+    +QG   +++++G
Sbjct: 108  HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLG 167
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
            ++GGT   PI+   +V I+   K  + P +D +     + +L ++ + DHRV++GA  AR
Sbjct: 168  HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVINGAAAAR 226

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
           +P +   E  D T+L   +    A+  +K  +KLT +P  +KA +  + E P  N+S+ P
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAV-AKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
           + + ++     +I  A+DT  GL+VP I++V++  LL +  E   +   +   K+    +
Sbjct: 97  SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
           QG   ++S++G++GGT   PI+   +V I+   K  + P +D +     + +L ++ + D
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
           HRV++GA  AR
Sbjct: 216 HRVINGAAAAR 226

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +I  A+DT  GL+VP I++V++ SLL +  E   +   +   K+    +QG   ++S++G
Sbjct: 108  HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLG 167
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
            ++GGT   PI+   +V I+   K  + P +D +     + +L ++ + DHRV++GA  AR
Sbjct: 168  HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVINGAAAAR 226

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
           +P +   E  D T+L   +    A+  EK  +KLT +P  +KA +  + E P  N+S+ P
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
           + + ++     +I  A+DT  GL+VP I++V++  LL +  E   +   +   K+    +
Sbjct: 97  SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
           QG   ++S++G++GGT   PI+   +V I+   K  + P +D +     + +L ++ + D
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
            RV++GA  AR
Sbjct: 216 CRVINGAAAAR 226

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            +I  A+DT  GL+VP I++V++ SLL +  E   +   +   K+    +QG   ++S++G
Sbjct: 108  HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLG 167
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
            ++GGT   PI+   +V I+   K  + P +D +     + +L ++ + D RV++GA  AR
Sbjct: 168  HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDCRVINGAAAAR 226

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 111/211 (52%), Gaps = 12/211 (5%)
Query: 694 MTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPIL 753
           M    TIP   L+ +V+  ++  V+ +++ + +   R K++   F IKA +L   + P  
Sbjct: 29  MQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEA 86
Query: 754 NASIDPTQENILVNPDH--NISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHE 811
           N+S   T    ++  +H  ++S+A+ T  GL+ P + + +   +  I  +++ +   + E
Sbjct: 87  NSSWMDT----VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKARE 142
Query: 812 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQ--LLPRFDAEMRIVAK 869
           GK+ P + QGGT ++SN+G  G      II P Q CI+A G  +  L+P  D E      
Sbjct: 143 GKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPA-DNEKGFDVA 201
Query: 870 CILNVTWAADHRVVDGATVAR-AATLWKSLE 899
            +++VT + DHRVVDGA  A+  A   K LE
Sbjct: 202 SMMSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            ++S+A+ T  GL+ P + + +   +  I  +++ +   + EGK+ P + QGGT ++SN+G
Sbjct: 102  DVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLG 161
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQ--LLPRFDAEMRVVAKCILNVTWAADHRVVDGATV 1025
              G      II P Q CI+A G  +  L+P  D E       +++VT + DHRVVDGA  
Sbjct: 162  MFGIKNFSAIINPPQACILAIGASEDKLVPA-DNEKGFDVASMMSVTLSCDHRVVDGAVG 220
Query: 1026 ARAATLWKSLVENPALLL 1043
            A+    ++  +E P  +L
Sbjct: 221  AQWLAEFRKYLEKPITML 238

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248
           +FKL DIGEGI E  I +W   V  G  +NE DV+CEV++DKA V I S  KG V ++  
Sbjct: 3   EFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 60
Query: 249 GEGDVALVGKPLLDI 263
            EG VA VG+ L+ +
Sbjct: 61  PEGTVATVGQTLITL 75

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 508
           +F L DIGEGI E  I +W   V  G  +NE DV+CEV++DKA V I S  KG V ++  
Sbjct: 3   EFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 60
Query: 509 GEGDVALVGKPLLDI 523
            EG VA VG+ L+ +
Sbjct: 61  PEGTVATVGQTLITL 75

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 9/215 (4%)
Query: 679 NVIPIRGYVKGMFKSMTEANT-IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMP 737
           +V P+ G    M + MT ++  IP+ + + EV   +L  ++++  +   E     LT   
Sbjct: 15  DVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALT--- 71
Query: 738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAID--TKHGLVVPNIKSVNKLCL 795
             ++ L + +  + ILN++   + E   V+    + +     T+ GL+VP +        
Sbjct: 72  --LRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNT 129
Query: 796 LDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQ 855
            ++   +  +   + EG + P +++G T ++SN G +G     P+I   +  I+  G I+
Sbjct: 130 RELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIK 189
Query: 856 LLPRFDAEMRIVAKCILNVTWAADHRVVDGATVAR 890
             P       +VA+  + +T   DHRVVDGA VA+
Sbjct: 190 PRPVVVGG-EVVARPTMTLTCVFDHRVVDGAQVAQ 223

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            ++     T+ GL+VP +      +  ++   +  +   + EG + P +++G T ++SN G
Sbjct: 105  HLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFG 164
Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
             +G     P+I   +  I+  G I+  P       VVA+  + +T   DHRVVDGA VA+
Sbjct: 165  ALGVDDGVPVINHPEAAILGLGAIKPRPVVVGG-EVVARPTMTLTCVFDHRVVDGAQVAQ 223
Query: 1028 AATLWKSLVENP 1039
                 + L+E+P
Sbjct: 224  FMCELRDLIESP 235

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           + +FKL DIGEG+ E  I  W+  V EG  + +   + EV +DK +V I S  +G + K+
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Query: 247 YYGEGDVALVGKPLLDI 263
            Y EG V  VG  LL I
Sbjct: 59  LYREGQVVPVGSTLLQI 75

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           + +F L DIGEG+ E  I  W+  V EG  + +   + EV +DK +V I S  +G + K+
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Query: 507 YYGEGDVALVGKPLLDI 523
            Y EG V  VG  LL I
Sbjct: 59  LYREGQVVPVGSTLLQI 75

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 766 VNPDH-NISIAIDTK-----HGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
           + P H N+ +AID +       LVV  IK    +           I   + +GK+   D 
Sbjct: 75  ITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDF 134
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD--AEMRIVAKCI---LNV 874
            G TIS++N G +G     P ++ GQ  I+  G ++    F   +E RI    I   + +
Sbjct: 135 SGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITL 194
Query: 875 TWAADHRVVDGATVARAATLWKSLENILVNPD 906
           T   DHR++ G   A +    +++  +L++ D
Sbjct: 195 TSTYDHRIIQG---AESGDFLRTIHQLLLDDD 223

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 903  VNPDH-NISIAIDTK-----HGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDI 956
            + P H N+ +AID +       LVV  IK    +           I   + +GK+   D 
Sbjct: 75   ITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDF 134
Query: 957  QGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD--AEMRVVAKCI---LNV 1011
             G TIS++N G +G     P ++  Q  I+  G ++    F   +E R+    I   + +
Sbjct: 135  SGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITL 194
Query: 1012 TWAADHRVVDGA 1023
            T   DHR++ GA
Sbjct: 195  TSTYDHRIIQGA 206

>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of Dihydrolipoamide Branched Chaintransacylase Length = 70

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           K LATP+VRR+     I   E+ G+GK GR+LKEDI+ Y+
Sbjct: 15  KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYL 54

>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd) Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 58

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           K LATP+VRR+     I   E+ G+GK GR+LKEDI+ Y+
Sbjct: 7   KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYL 46

>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 49

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           +++A PSVR+  +   +D + ++GTGK GRVLKEDI  ++
Sbjct: 6   RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 45

>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 58

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           K LATP+VR +     I   E+ G+GK GR+LKEDI+ Y+
Sbjct: 7   KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYL 46

>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit- Binding Domain Of Dihydrolipoamide Acetyltransferase From The Pyruvate Dehydrogenase Multienzyme Complex Of Bacillus Stearothermophilus Length = 43

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 346 ILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           ++A PSVR+  +   +D + ++GTGK GRVLKEDI  ++
Sbjct: 1   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 39

>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral Subunit-Binding Domain Of Dihydrolipoamide Acetyltransferase From The Pyruvate Dehydrogenase Multienzyme Complex Of Bacillus Stearothermophilus Length = 43

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           +A PSVR+  +   +D + ++GTGK GRVLKEDI  ++
Sbjct: 2   IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 39

>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 41

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           +A PSVR+  +   +D + ++GTGK GRVLKEDI  ++
Sbjct: 1   IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1045
2ii3_A	262	Lipoamide acyltransferase component of branched-C	1e-79
2ii3_A	262	Lipoamide acyltransferase component of branched-C	1e-54
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	8e-77
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	2e-35
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	3e-29
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	6e-53
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	2e-35
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	6e-50
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	1e-33
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	1e-44
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	2e-30
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	2e-43
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	5e-32
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	4e-39
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	3e-23
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	2e-32
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	6e-32
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	6e-27
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	9e-17
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	2e-21
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	5e-21
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	7e-21
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	8e-18
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	1e-18
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	9e-12
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	3e-18
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3rnm_E	58	Lipoamide acyltransferase component of branched-C	3e-12
3rnm_E	58	Lipoamide acyltransferase component of branched-C	9e-06
2coo_A	70	Lipoamide acyltransferase component of branched- c	3e-11
2coo_A	70	Lipoamide acyltransferase component of branched- c	1e-05
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	2e-10
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	1e-04
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	7e-10
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	5e-08
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	1e-09
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	4e-09
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	3e-09
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	2e-04
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	3e-09
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	5e-09
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	4e-04
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	7e-09
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	7e-09
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	4e-08
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	1e-07
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	4e-08
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	5e-08
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	1e-07
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	9e-08
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	9e-08
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	2e-07
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	5e-07
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	5e-07
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	7e-07
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	9e-07
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	9e-07
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	1e-06
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	1e-06
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	4e-06
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	4e-06
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	6e-06
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	2e-04
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	2e-05
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	2e-05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	3e-05
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	3e-05
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	3e-04
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	3e-04

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  259 bits (665), Expect = 1e-79
 Identities = 96/223 (43%), Positives = 148/223 (66%), Gaps = 2/223 (0%)

Query: 680 VIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
             P++G+ K M K+M+ A  IP     +EVD T+L  ++ ++  +   +  +KL++MPFF
Sbjct: 33  TEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFF 91

Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
           +KA SL + + PILNAS+D   +NI     HNI IA+DT+ GL+VPN+K+V    + +I 
Sbjct: 92  LKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIA 151

Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
            EL R+Q     G++   D+ GGT ++SN+G++GGT  +P+I+P +V I A G I+ LPR
Sbjct: 152 TELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPR 211

Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
           F+ +  +    I+NV+W+ADHR++DGATV+R + LWKS LEN 
Sbjct: 212 FNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENP 254

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  190 bits (484), Expect = 1e-54
 Identities = 69/145 (47%), Positives = 102/145 (70%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            +NI     HNI IA+DT+ GL+VPN+K+V   S+ +I  EL R+Q     G++   D+ G
Sbjct: 114  QNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIG 173

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
            GT ++SN+G++GGT  +P+I+P +V I A G I+ LPRF+ +  V    I+NV+W+ADHR
Sbjct: 174  GTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHR 233

Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
            ++DGATV+R + LWKS +ENPA +L
Sbjct: 234  IIDGATVSRFSNLWKSYLENPAFML 258

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  257 bits (660), Expect = 8e-77
 Identities = 127/477 (26%), Positives = 203/477 (42%), Gaps = 81/477 (16%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  +NE DV+CEV++DKA V I S  KG V ++ 
Sbjct: 3   FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60

Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEAD--------------SLDRKAAPGVSEVNTPD 553
             EG VA VG+ L+ ++         +                S + K           +
Sbjct: 61  VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAE 120

Query: 554 TSDQPNETLHKDP--------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTA 605
               PN  +   P          +D + ++GTGK GRVLKEDI  ++   +     A   
Sbjct: 121 AEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEE 180

Query: 606 HVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDE 665
               A+                 +  T            + +R       I         
Sbjct: 181 KAAPAA----------------AKPATTEGEFPETREKMSGIR-----RAI--------- 210

Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALY 725
                   +  + +  P           M EA            D T+L   + +  A+ 
Sbjct: 211 -----AKAMVHSKHTAP-------HVTLMDEA------------DVTKLVAHRKKFKAIA 246

Query: 726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVP 785
            EK  +KLT++P+ +KAL   + E+P+LN SID   E I+    +NI IA DT  GL+VP
Sbjct: 247 AEK-GIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVP 305

Query: 786 NIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ 845
            IK  ++  +  + +E+  +   + +GK+ P +++G + +++N+G+ GG    P+I   +
Sbjct: 306 VIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPE 365

Query: 846 VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
           V I+  G+I   P       IVA  +L ++ + DHR++DGAT  +A    K  L + 
Sbjct: 366 VAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDP 421

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  139 bits (352), Expect = 2e-35
 Identities = 47/145 (32%), Positives = 83/145 (57%), Gaps = 1/145 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            E I+    +NI IA DT  GL+VP IK  ++  +  + +E+  +   + +GK+ P +++G
Sbjct: 282  EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 341

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
             + +++N+G+ GG    P+I   +V I+  G+I   P       +VA  +L ++ + DHR
Sbjct: 342  ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHR 400

Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
            ++DGAT  +A    K L+ +P LLL
Sbjct: 401  MIDGATAQKALNHIKRLLSDPELLL 425

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  121 bits (305), Expect = 3e-29
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 32/200 (16%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
            +FKL DIGEGI E  I +W   V  G  +NE DV+CEV++DKA V I S  KG V ++ 
Sbjct: 3   FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60

Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
             EG VA VG+ L+ ++         +    +       +E  + +              
Sbjct: 61  VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDA--------- 111

Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
                   + P    +   +  V                +A PSVR+  +   +D + ++
Sbjct: 112 -----VAPNAPAAEAEAGPNRRV----------------IAMPSVRKYAREKGVDIRLVQ 150

Query: 368 GTGKQGRVLKEDIITYMNSP 387
           GTGK GRVLKEDI  ++   
Sbjct: 151 GTGKNGRVLKEDIDAFLAGG 170

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  184 bits (469), Expect = 6e-53
 Identities = 57/224 (25%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 680 VIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPF 738
            +P+   ++    ++  +   +P +   E  D T+L   +    A+ ++   +KLT +P 
Sbjct: 17  EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKA-GVKLTVLPL 75

Query: 739 FIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDI 798
            +KA +  + E P  N+S+ P+ + ++     +I  A+DT  GL+VP I++V++  LL +
Sbjct: 76  LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135

Query: 799 TRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP 858
             E   +   +   K+    +QG   ++S++G++GGT   PI+   +V I+   K  + P
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP 195

Query: 859 RFDAEMRIVAKCILNVTWAADHRVVDGATVARAAT-LWKSLENI 901
            +D +     + +L ++ + D RV++GA  AR    L   L +I
Sbjct: 196 VWDGK-AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADI 238

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  134 bits (339), Expect = 2e-35
 Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 892  ATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKV 951
            ++L  S + ++     +I  A+DT  GL+VP I++V++ SLL +  E   +   +   K+
Sbjct: 92   SSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKL 151

Query: 952  LPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNV 1011
                +QG   ++S++G++GGT   PI+   +V I+   K  + P +D +     + +L +
Sbjct: 152  GADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGK-AFQPRLMLPL 210

Query: 1012 TWAADHRVVDGATVARAATLWKSLVENPALLL 1043
            + + D RV++GA  AR       L+ +   +L
Sbjct: 211  SLSYDCRVINGAAAARFTKRLGDLLADIRAIL 242

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  176 bits (448), Expect = 6e-50
 Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 10/237 (4%)

Query: 668 PAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
            A    V    +V P+ G    M + MT +   IP+ + + EV   +L  ++++    + 
Sbjct: 4   AAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDR----FV 59

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQEN--ILVNPDHNISIAIDTKHGLVV 784
                ++T     ++ L + +  + ILN++   + E   + V+   ++     T+ GL+V
Sbjct: 60  SAA-PEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLV 118

Query: 785 PNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPG 844
           P +         ++   +  +   + EG + P +++G T ++SN G +G     P+I   
Sbjct: 119 PVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHP 178

Query: 845 QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA-ATLWKSLEN 900
           +  I+  G I+  P       +VA+  + +T   DHRVVDGA VA+    L   +E+
Sbjct: 179 EAAILGLGAIKPRPVVVGGE-VVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIES 234

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  129 bits (326), Expect = 1e-33
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)

Query: 901  ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGT 960
            + V+   ++     T+ GL+VP +      +  ++   +  +   + EG + P +++G T
Sbjct: 98   VHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGST 157

Query: 961  ISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVV 1020
             ++SN G +G     P+I   +  I+  G I+  P       V     + +T   DHRVV
Sbjct: 158  FTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARP-TMTLTCVFDHRVV 216

Query: 1021 DGATVARAATLWKSLVENPALLL 1043
            DGA VA+     + L+E+P   L
Sbjct: 217  DGAQVAQFMCELRDLIESPETAL 239

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  160 bits (406), Expect = 1e-44
 Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 15/219 (6%)

Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
           + + G  + +F  MT+A   +P   + EEVD T +  + +      + +   K+T   F 
Sbjct: 9   LEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDS----AKARN-RKVTVTGFL 63

Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
            + +   + ++P LNA  D T+   ++   +NI IA+DT  GL V  IK  ++  +++I+
Sbjct: 64  ARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEIS 123

Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
            E+      + E K+   ++Q  T +++NVG +GG +  PII   +V I+   +I     
Sbjct: 124 AEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRIL---- 179

Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
                R   K  + ++ + DHR++DGA   R     K +
Sbjct: 180 ----EREGRK-YMYLSLSCDHRLIDGAVATRFIVDLKKV 213

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  119 bits (300), Expect = 2e-30
 Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            NI IA+DT  GL V  IK  ++ S+++I+ E+      + E K+   ++Q  T +++NVG
Sbjct: 95   NIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVG 154

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
             +GG +  PII   +V I+   +I          R   K  + ++ + DHR++DGA   R
Sbjct: 155  TIGGIMSTPIINYPEVAILGVHRIL--------EREGRK-YMYLSLSCDHRLIDGAVATR 205

Query: 1028 AATLWKSLVENPALLL 1043
                 K ++E+P  ++
Sbjct: 206  FIVDLKKVIEDPNAII 221

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  157 bits (398), Expect = 2e-43
 Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%)

Query: 668 PAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
           P            IPI    + + + + ++  TIP   L+ +V+  ++  V+ +++ + +
Sbjct: 2   PGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE 61

Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
            +   K++   F IKA +L   + P  N+S       I  N   ++S+A+ T  GL+ P 
Sbjct: 62  GRS--KISVNDFIIKASALACLKVPEANSSWMD--TVIRQNHVVDVSVAVSTPAGLITPI 117

Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
           + + +   +  I  +++ +   + EGK+ P + QGGT ++SN+G  G      II P Q 
Sbjct: 118 VFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQA 177

Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
           CI+A G  +      D E       +++VT + DHRVVDGA     A         L  P
Sbjct: 178 CILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAV---GAQWLAEFRKYLEKP 234

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  124 bits (313), Expect = 5e-32
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 1/146 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
              I  N   ++S+A+ T  GL+ P + + +   +  I  +++ +   + EGK+ P + QG
Sbjct: 93   TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQG 152

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRF-DAEMRVVAKCILNVTWAADH 1017
            GT ++SN+G  G      II P Q CI+A G  +      D E       +++VT + DH
Sbjct: 153  GTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDH 212

Query: 1018 RVVDGATVARAATLWKSLVENPALLL 1043
            RVVDGA  A+    ++  +E P  +L
Sbjct: 213  RVVDGAVGAQWLAEFRKYLEKPITML 238

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  145 bits (367), Expect = 4e-39
 Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 7/253 (2%)

Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSAL 724
             P            IPI G  K + K M+ +   IP   +  EVD T L   +N V   
Sbjct: 6   AMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDS 65

Query: 725 YQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVV 784
           ++++    LTY  FFIKA++  + E P LN++     + I+ + + NISIAI     L V
Sbjct: 66  FKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWA--GDKIIEHANINISIAIAAGDLLYV 123

Query: 785 PNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPG 844
           P IK+ ++  +  I RE+  + G +  GK+   D++GGT ++++ G+ G      II   
Sbjct: 124 PVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHP 183

Query: 845 QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVN 904
           Q  I+    I   P    +M I  + ++N+  + DHR++DG     A    ++++  +  
Sbjct: 184 QAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLL---AGKFLQAIKANVEK 239

Query: 905 PDHNISIAIDTKH 917
                +   +  H
Sbjct: 240 ISKENTALYEGHH 252

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            + I+ + + NISIAI     L VP IK+ ++ S+  I RE+  + G +  GK+   D++G
Sbjct: 101  DKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEG 160

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
            GT ++++ G+ G      II   Q  I+    I   P    +M +  + ++N+  + DHR
Sbjct: 161  GTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHR 219

Query: 1019 VVDGATVARAATLWKSLVENPA 1040
            ++DG    +     K+ VE  +
Sbjct: 220  ILDGLLAGKFLQAIKANVEKIS 241

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score =  120 bits (302), Expect = 2e-32
 Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 2/91 (2%)

Query: 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 245
           +++QFKL+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3   QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60

Query: 246 VYYGEGDVALVGKPLLDIEVEDEGVAAEEAD 276
           +YY   D+A VGKPL+DIE E          
Sbjct: 61  LYYNLDDIAYVGKPLVDIETEALKDLEHHHH 91

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score =  118 bits (298), Expect = 6e-32
 Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 2/91 (2%)

Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
           +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3   QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60

Query: 506 VYYGEGDVALVGKPLLDIEVEDEGVAAEEAD 536
           +YY   D+A VGKPL+DIE E          
Sbjct: 61  LYYNLDDIAYVGKPLVDIETEALKDLEHHHH 91

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  109 bits (274), Expect = 6e-27
 Identities = 47/179 (26%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 708 EVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVN 767
           EV+   + D++ Q    ++++  ++L +M F++KA+   +  +P +NASID   ++++ +
Sbjct: 35  EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASID--GDDVVYH 92

Query: 768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMS 827
              ++S+A+ T  GLV P ++ V+ L + DI +++  +     +GK+   D+ GG  +++
Sbjct: 93  NYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTIT 152

Query: 828 NVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP-RFDAEMRIVAKCILNVTWAADHRVVDG 885
           N G  G  +  PII P Q  I+    I+  P   + +  +    ++ +  + DHR++DG
Sbjct: 153 NGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQ--VEILPMMYLALSYDHRLIDG 209

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 908  NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
            ++S+A+ T  GLV P ++ V+ L + DI +++  +     +GK+   D+ GG  +++N G
Sbjct: 96   DVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGG 155

Query: 968  NVGGTLVQPIIVPRQVCIVAFGKIQLLP-RFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
              G  +  PII P Q  I+    I+  P   + +  V    ++ +  + DHR++DG    
Sbjct: 156  VFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQ--VEILPMMYLALSYDHRLIDGRESV 213

Query: 1027 RAATLWKSLVENPALLL 1043
                  K L+E+P  LL
Sbjct: 214  GFLVTIKELLEDPTRLL 230

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           + +FKL DIGEG+ E  I  W+  V EG  + +   + EV +DK +V I S  +G + K+
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58

Query: 247 YYGEGDVALVGKPLLDIE 264
            Y EG V  VG  LL I+
Sbjct: 59  LYREGQVVPVGSTLLQID 76

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           + +F L DIGEG+ E  I  W+  V EG  + +   + EV +DK +V I S  +G + K+
Sbjct: 1   MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58

Query: 507 YYGEGDVALVGKPLLDIE 524
            Y EG V  VG  LL I+
Sbjct: 59  LYREGQVVPVGSTLLQID 76

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score = 85.1 bits (210), Expect = 1e-18
 Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 19/194 (9%)

Query: 717 VKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAI 776
            K  ++ L +        + P  I  ++  + +   L  +I    + ++V    +    +
Sbjct: 32  SKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIK--DDELIVWDSVDPQFTV 89

Query: 777 DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVL--PRDIQGGTISMSNVGNVGG 834
             +       +       +       L +         L          +++S +  V  
Sbjct: 90  FHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNF 149

Query: 835 TLVQPIIVPGQVC---IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA 891
                 +         I+   K           R+    +L ++    H V DG  VAR 
Sbjct: 150 DSFNLNVANFTDYFAPIITMAKY-----QQEGDRL----LLPLSVQVHHAVCDGFHVAR- 199

Query: 892 ATLWKSLENILVNP 905
                 L+ +  + 
Sbjct: 200 --FINRLQELCNSK 211

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score = 64.7 bits (157), Expect = 9e-12
 Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 14/146 (9%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVL--PRDI 956
            + ++V    +    +  +       +       +       L +         L      
Sbjct: 75   DELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT 134

Query: 957  QGGTISMSNVGNVGGTLVQPIIVPRQVC---IVAFGKIQLLPRFDAEMRVVAKCILNVTW 1013
                +++S +  V        +         I+   K Q         +   + +L ++ 
Sbjct: 135  PENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQ---------QEGDRLLLPLSV 185

Query: 1014 AADHRVVDGATVARAATLWKSLVENP 1039
               H V DG  VAR     + L  + 
Sbjct: 186  QVHHAVCDGFHVARFINRLQELCNSK 211

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 84.0 bits (207), Expect = 3e-18
 Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 32/220 (14%)

Query: 690 MFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTE 749
            F+S+ +     +   T ++D T             +   + K  + P FI  L+  M  
Sbjct: 24  AFQSVAQ----CTYNQTVQLDITAF----------LKTVKKNKHKFYPAFIHILARLMNA 69

Query: 750 HPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCS 809
           HP    ++      +++    +    +  +      ++ S              +   C 
Sbjct: 70  HPEFRMAMKD--GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACY 127

Query: 810 HEGKVL-PRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC---IVAFGKIQLLPRFDAEMR 865
            E     P+        +S    V  T     +         +   GK      +    +
Sbjct: 128 GENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY-----YTQGDK 182

Query: 866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
           ++    + +     H V DG  V R   +   L+      
Sbjct: 183 VL----MPLAIQVHHAVCDGFHVGR---MLNELQQYCDEW 215

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score = 66.3 bits (161), Expect = 3e-12
 Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 13/145 (8%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVL-PRDIQ 957
              +++    +    +  +      ++ S              +   C  E     P+   
Sbjct: 80   GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFI 139

Query: 958  GGTISMSNVGNVGGTLVQPIIVPRQVC---IVAFGKIQLLPRFDAEMRVVAKCILNVTWA 1014
                 +S    V  T     +         +   GK     + D  +       + +   
Sbjct: 140  ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYY--TQGDKVL-------MPLAIQ 190

Query: 1015 ADHRVVDGATVARAATLWKSLVENP 1039
              H V DG  V R     +   +  
Sbjct: 191  VHHAVCDGFHVGRMLNELQQYCDEW 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.1 bits (207), Expect = 2e-16
 Identities = 103/701 (14%), Positives = 200/701 (28%), Gaps = 212/701 (30%)

Query: 175 HHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVT 234
           HHH H         Q++  DI               V E A ++ FD  C+   D     
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILS-------------VFEDAFVDNFD--CKDVQDMPKSI 45

Query: 235 ITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSE-VNTPD 293
           ++      +  +     D       L                 L  K    V + V   +
Sbjct: 46  LSKE---EIDHII-MSKDAVSGTLRLFWT--------------LLSKQEEMVQKFV---E 84

Query: 294 TSDQPN-----ETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILA 348
              + N       +  E  +             P +     +   ++  N N+    + A
Sbjct: 85  EVLRINYKFLMSPIKTEQRQ-------------PSMMTRMYIEQRDRLYNDNQ----VFA 127

Query: 349 TPSVRRMIKHYEIDT--KELR-----------GTGKQ---GRVLK-EDIITYMNSPIDET 391
             +V R+  + ++     ELR           G+GK      V     +   M+  I   
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 392 NLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCH-----------HHLHT 440
           NL +         V+ +   +         +   H S   L+ H              + 
Sbjct: 188 NLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 441 SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYK 500
           +C+   L+   L ++            N         N F++ C+       + +T+R+K
Sbjct: 245 NCL---LV---LLNV-----------QNAKA-----WNAFNLSCK-------ILLTTRFK 275

Query: 501 GTVRKVYYGEGDVALVGKPLLDIEVED--EGVAAEEADSLDRKAAPGVSEVNTPDTSDQP 558
                         L       I ++     +  +E  SL  K       ++     D P
Sbjct: 276 QVTD---------FLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDC-RPQDLP 319

Query: 559 NETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREAS-NVISIR 617
            E L  +P ++              +++ + T+ N      +      + E+S NV+   
Sbjct: 320 REVLTTNPRRLSII--------AESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLE-P 368

Query: 618 GYVKGMFKSMT--EANT-IPSLRL--------TEEVD--TTQL-------RDVKKE---- 653
              + MF  ++    +  IP++ L          +V     +L       +  K+     
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 654 -DIITYMNSPSDETNPAHTAHVREASNVI-----------PIRGYV----------KGMF 691
             I   +    +     H   + +  N+             +  Y               
Sbjct: 429 PSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 692 KSMTEANTI-PSLRLTE---EVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCM 747
           + MT    +    R  E     D+T      + ++ L Q KF     Y P+         
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----YKPYICDN---DP 539

Query: 748 TEHPILNASID--PTQENILVNPDHN--ISIAIDTKHGLVV 784
               ++NA +D  P  E  L+   +   + IA+  +   + 
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 6e-10
 Identities = 73/528 (13%), Positives = 135/528 (25%), Gaps = 162/528 (30%)

Query: 69  NEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRIST 128
            +V L   +       + W +          L  L                  L ++I  
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----------------QKLLYQIDP 211

Query: 129 NVVFEENFTYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLI 188
           N     + +   K    +    L R   S     + L                     L+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCL---------------------LV 249

Query: 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248
              L ++            N         N F++ C+       + +T+R+K        
Sbjct: 250 ---LLNV-----------QNAKA-----WNAFNLSCK-------ILLTTRFKQVTD---- 279

Query: 249 GEGDVALVGKPLLDIEVED--EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEP 306
                 L       I ++     +  +E  SL  K       ++     D P E L    
Sbjct: 280 -----FLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDC-RPQDLPREVL---- 323

Query: 307 NKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKH-YE-IDTK 364
              N  P      +  +  RD         +    N WK +    +  +I+     ++  
Sbjct: 324 -TTN--PRRLS--IIAESIRD--------GLATWDN-WKHVNCDKLTTIIESSLNVLEPA 369

Query: 365 ELRGTGKQGRVLKEDI-ITYM--------NSPIDETNLAHTAHVR------EASNVISIR 409
           E R    +  V      I  +            D   + +  H           + ISI 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 410 GY---VKGMFKSMTEAH--------------GHHLSTPPLQ----CH--HHLHTSCIRHK 446
                +K   ++    H                 L  P L      H  HHL       +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 447 LIQF-----NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVT----ITS 497
           +  F     +   + + IR  +   WN      A  +  + + +++  K  +        
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTA-WN------ASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 498 RYKGTVRKVYYGEGDVALVGKPLLDI-----EVEDEGVAAEEADSLDR 540
           R    +        +  L+     D+       EDE +  E    + R
Sbjct: 543 RLVNAILDFLPKIEEN-LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 54/206 (26%)

Query: 15  CKTGFLFGEIHRKVSNVTT------DSHSNNETVEITVS-ITATLPFSESEDLLFS---- 63
           CK   L          +TT      D  S   T  I++   + TL   E + LL      
Sbjct: 266 CKI--L----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 64  KDGTL-NEV-----LLDTILGEFKADVVGWYSFTRNQDLSQ--SLCQLFLAHHFSNYFSH 115
           +   L  EV        +I+ E   D +  +   ++ +  +  ++ +  L       +  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 116 IPKQLFLF---FRISTNV--------VFEENFTYTNKFLCTTGSDSLSRKFSSSLQLR-H 163
           +  +L +F     I T +        +  +     NK        SL  K      +   
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIP 429

Query: 164 GLHLSTPPLQCH----HHLHTSCIRH 185
            ++L    L+      + LH S + H
Sbjct: 430 SIYLE---LKVKLENEYALHRSIVDH 452

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAH 395
           K LATP+VR +     I   E+ G+GK GR+LKEDI+ Y+     E +  H
Sbjct: 7   KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLEHHHHH 57

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAH 603
           N I   E+ G+GK GR+LKEDI+ Y+   + E +  H
Sbjct: 21  NNIKLSEVVGSGKDGRILKEDILNYLEKQTLEHHHHH 57

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSP 387
           K LATP+VRR+     I   E+ G+GK GR+LKEDI+ Y+   
Sbjct: 15  KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ 57

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPA 602
           N I   E+ G+GK GR+LKEDI+ Y+   +    P 
Sbjct: 29  NNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPP 64

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 14/38 (36%), Positives = 26/38 (68%)

Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           LA P+  R+++   +   E++GTG  GR+LKED++ ++
Sbjct: 1   LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 567 NKIDTKELRGTGKQGRVLKEDIITYM 592
             +   E++GTG  GR+LKED++ ++
Sbjct: 13  KGVSPAEVQGTGLGGRILKEDVMRHL 38

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 62.6 bits (153), Expect = 7e-10
 Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 45/192 (23%)

Query: 740 IKALSLCMTEHPILNASID-----PTQENILVNPDH-NISIAIDT-----KHGLVVPNIK 788
           ++A+     + P +N         PT     + P H N+ +AID         LVV  IK
Sbjct: 52  VQAVK----KFPNMNRHFAVVDGKPT----AITPAHTNLGLAIDLQGKDGNRSLVVAAIK 103

Query: 789 SVNKLCLL-------DITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
               +          DI R        + +GK+   D  G TIS++N G +G     P +
Sbjct: 104 RCETMRFGQFIAAYEDIVRR-------ARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRL 156

Query: 842 VPGQVCIVAFGKIQLLPRFD-------AEMRIVAKCILNVTWAADHRVVDGATVARAATL 894
           + GQ  I+  G ++    F        A++ I     L  T+  DHR++ GA    +   
Sbjct: 157 MQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTY--DHRIIQGAE---SGDF 211

Query: 895 WKSLENILVNPD 906
            +++  +L++ D
Sbjct: 212 LRTIHQLLLDDD 223

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 56.0 bits (136), Expect = 5e-08
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 29/158 (18%)

Query: 902  LVNPDH-NISIAIDT-----KHGLVVPNIKSVNKLSLL-------DITRELLRIQGCSHE 948
             + P H N+ +AID         LVV  IK    +          DI R        + +
Sbjct: 74   AITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRR-------ARD 126

Query: 949  GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD-------AEM 1001
            GK+   D  G TIS++N G +G     P ++  Q  I+  G ++    F        A++
Sbjct: 127  GKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADL 186

Query: 1002 RVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENP 1039
             +     L  T+  DHR++ GA           L+ + 
Sbjct: 187  GIGKLITLTSTY--DHRIIQGAESGDFLRTIHQLLLDD 222

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           + +  + DI E   EV +K        G ++     +  VE DKAS+ + + + G V+++
Sbjct: 2   VKEVNVPDIVEVT-EVMVKV-------GDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53

Query: 247 YYGEGDVALVGKPLLDIEVEDEGVAAEEA 275
               GD    G  ++  EVE    AA  A
Sbjct: 54  KVNVGDKVKTGSLIMIFEVEGAAPAAAPA 82

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           + + N+ DI E   EV +K        G ++     +  VE DKAS+ + + + G V+++
Sbjct: 2   VKEVNVPDIVEVT-EVMVKV-------GDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53

Query: 507 YYGEGDVALVGKPLLDIEVEDEGVAAEEA 535
               GD    G  ++  EVE    AA  A
Sbjct: 54  KVNVGDKVKTGSLIMIFEVEGAAPAAAPA 82

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 11/46 (23%), Positives = 27/46 (58%)

Query: 341 KNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386
           + +     +P++RR++  + +D   ++GTG  GR+ +ED+  ++  
Sbjct: 5   EEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 50

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNS 594
           + +D   ++GTG  GR+ +ED+  ++  
Sbjct: 23  HNLDASAIKGTGVGGRLTREDVEKHLAK 50

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386
           +++A PSVR+  +   +D + ++GTGK GRVLKEDI  ++  
Sbjct: 6   RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 47

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSP 387
           ++ A P+ RR+ K   ID  +++GTG  G +  ED+  Y    
Sbjct: 4   EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET 46

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPSDETNPA 602
           ID  +++GTG  G +  ED+  Y    +  T PA
Sbjct: 20  IDLSKVKGTGPGGVITVEDVKRYAEETAKATAPA 53

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 16/123 (13%)

Query: 175 HHHLHTSCIRHKLIQFKLADIGEGIR-----------EVNIKEWNGNVTEGARINEFDVV 223
           HHH H    R + + F+ +     ++              ++ W      G +++E D++
Sbjct: 4   HHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLL 61

Query: 224 CEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPLLDIEVEDEGVAAEEADSLDRK 281
            E+E+DKA++    + +G + K+   EG  DV  +G PL  I  ++  ++A         
Sbjct: 62  AEIETDKATIGFEVQEEGYLAKILVPEGTRDVP-LGTPLCIIVEKEADISAFADYRPTEV 120

Query: 282 AAP 284
              
Sbjct: 121 TDL 123

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 435 HHHLHTSCIRHKLIQFNLADIGEGIR-----------EVNIKEWNGNVTEGARINEFDVV 483
           HHH H    R + + F  +     ++              ++ W      G +++E D++
Sbjct: 4   HHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLL 61

Query: 484 CEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPLLDIEVEDEGVAAEEADSLDRK 541
            E+E+DKA++    + +G + K+   EG  DV  +G PL  I  ++  ++A         
Sbjct: 62  AEIETDKATIGFEVQEEGYLAKILVPEGTRDVP-LGTPLCIIVEKEADISAFADYRPTEV 120

Query: 542 AAP 544
              
Sbjct: 121 TDL 123

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           + +  + DIG    EV + E    V  G ++     +  VE DKAS+ + + + G V+++
Sbjct: 2   VKEVNVPDIGG--DEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57

Query: 247 YYGEGDVALVGKPLLDIEVEDEG 269
               GD    G  ++  EVE   
Sbjct: 58  KVNVGDKVKTGSLIMIFEVEGAA 80

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           + + N+ DIG    EV + E    V  G ++     +  VE DKAS+ + + + G V+++
Sbjct: 2   VKEVNVPDIGG--DEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57

Query: 507 YYGEGDVALVGKPLLDIEVEDEG 529
               GD    G  ++  EVE   
Sbjct: 58  KVNVGDKVKTGSLIMIFEVEGAA 80

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 22/205 (10%), Positives = 48/205 (23%), Gaps = 43/205 (20%)

Query: 848  IVAFGKIQLLPRFDAEMRIVAKCI-----LNVTWAADHRVVDGATVARAATLWKSLENIL 902
                 K      F   +  V +              D RVV          L+ ++    
Sbjct: 41   ARQRAKAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVV----------LYDTI---- 86

Query: 903  VNPDHNISIAI-----DTKHGLVVPNIKSVNKL--SLLDITRELLRIQGCSHEGKVLPRD 955
                 ++   I             P     +        I   +               D
Sbjct: 87   -----DMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVAD 141

Query: 956  IQGGTISMSNVGNVGGTLVQPIIVPRQVC---IVAFGKIQLLPRFDAEMRVVAKCILNVT 1012
               G I +S   ++  T +      R      ++  GK          +    + ++ + 
Sbjct: 142  GDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGKA---------IIREGRLVMPIA 192

Query: 1013 WAADHRVVDGATVARAATLWKSLVE 1037
                H  +DG  ++      +  ++
Sbjct: 193  MTIHHGFIDGHHLSLFYKKVEDFLK 217

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           L++ K+ DIG G   V+I      V  G  I   D +  +E+DKA++ + +   G V++V
Sbjct: 2   LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58

Query: 247 YYGEGDVALVGKPLLDIEVEDEG 269
               GD    G  ++ +E E   
Sbjct: 59  KVKVGDKISEGGLIVVVEAEGTA 81

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           L++  + DIG G   V+I      V  G  I   D +  +E+DKA++ + +   G V++V
Sbjct: 2   LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58

Query: 507 YYGEGDVALVGKPLLDIEVEDEG 529
               GD    G  ++ +E E   
Sbjct: 59  KVKVGDKISEGGLIVVVEAEGTA 81

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
            I  W     EG +INE D++ EVE+DKA+V   S  +  + K+   EG  DV  +G  +
Sbjct: 23  TIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVP-IGAII 79

Query: 261 LDIEVEDEGVAAEEADSLDRKAAPG 285
                + E + A +  +LD  AA G
Sbjct: 80  CITVGKPEDIEAFKNYTLDSSAASG 104

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
            I  W     EG +INE D++ EVE+DKA+V   S  +  + K+   EG  DV  +G  +
Sbjct: 23  TIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVP-IGAII 79

Query: 521 LDIEVEDEGVAAEEADSLDRKAAPG 545
                + E + A +  +LD  AA G
Sbjct: 80  CITVGKPEDIEAFKNYTLDSSAASG 104

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 346 ILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385
           +LA P+ R++ +   I  +E+ G+G  GRV  ED+  Y  
Sbjct: 1   MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
           NI +W     EG  ++  D +CE+E+DKA VT+ +   G + K+   EG  ++  +G  +
Sbjct: 23  NIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIR-LGSLI 79

Query: 261 LDIEVEDEGVAAEEADS 277
             I  E E        S
Sbjct: 80  GLIVEEGEDWKHVSGPS 96

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 48.0 bits (115), Expect = 5e-07
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
           NI +W     EG  ++  D +CE+E+DKA VT+ +   G + K+   EG  ++  +G  +
Sbjct: 23  NIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIR-LGSLI 79

Query: 521 LDIEVEDEGVAAEEADS 537
             I  E E        S
Sbjct: 80  GLIVEEGEDWKHVSGPS 96

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248
             ++ DIG    +  + E    V  G  I     +  +ES KAS+ + S   G V+ V  
Sbjct: 3   IIRVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSV 57

Query: 249 GEGDVALVGKPLLDIEVEDEG 269
             GD    G  ++++E     
Sbjct: 58  KLGDKLKEGDAIIELEPAAGA 78

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 46.4 bits (111), Expect = 9e-07
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 454 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 513
           DIG    +  + E    V  G  I     +  +ES KAS+ + S   G V+ V    GD 
Sbjct: 8   DIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62

Query: 514 ALVGKPLLDIEVEDEG 529
              G  ++++E     
Sbjct: 63  LKEGDAIIELEPAAGA 78

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40

 Score = 45.1 bits (108), Expect = 9e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
           A PS+RR+ +   +D   LRGTG  GR+ +ED+    
Sbjct: 2   AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267
           V +G  +       E+E  K  +T+  + +G V+ +    G V   G  +  +E++D
Sbjct: 21  VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 76

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527
           V +G  +       E+E  K  +T+  + +G V+ +    G V   G  +  +E++D
Sbjct: 21  VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 76

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267
           V +G  +       E+E  K  +T+  + +G V+ +    G V   G  +  +E++D
Sbjct: 33  VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 88

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527
           V +G  +       E+E  K  +T+  + +G V+ +    G V   G  +  +E++D
Sbjct: 33  VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 88

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 49.6 bits (119), Expect = 6e-06
 Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 18/173 (10%)

Query: 356  IKHYEIDTKEL---RGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVRE-ASNVISIRGY 411
            ++ Y +  +EL         G+   +         ++E+   H  ++     N+ SI  +
Sbjct: 1076 VEFYPVTEEELEVIIEDNDNGKFKID---------VEESIFDHKEYLAWINENIDSIVAF 1126

Query: 412  VKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIR-EVNIKEWNGN 470
             +       +     +     +            +       D  E +  E   + W   
Sbjct: 1127 QEAQGGEKADEFARLIQVANAELKKSGDDKPQDVE----EYPDDAELLYSEYTGRFWKPV 1182

Query: 471  VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
               G  +   D V  +E+ K  + + +   G V K+ +  GD+   G  +  I
Sbjct: 1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 207  WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
            W      G  +   D V  +E+ K  + + +   G V K+ +  GD+   G  +  I
Sbjct: 1179 WKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
            ++ W      G +++E D++ E+E+D A++    + +G + K+   EG  DV  +G PL
Sbjct: 21  TVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVP-LGTPL 77

Query: 261 LDIEVEDEGV 270
             I  ++  +
Sbjct: 78  CIIVEKEADI 87

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
            ++ W      G +++E D++ E+E+D A++    + +G + K+   EG  DV  +G PL
Sbjct: 21  TVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVP-LGTPL 77

Query: 521 LDIEVEDEGV 530
             I  ++  +
Sbjct: 78  CIIVEKEADI 87

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 207 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266
           W  +V  G +I +   V  +ES K  + I +   G V++V   EGD    G  LL++   
Sbjct: 11  WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70

Query: 267 DE 268
            +
Sbjct: 71  TQ 72

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 467 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526
           W  +V  G +I +   V  +ES K  + I +   G V++V   EGD    G  LL++   
Sbjct: 11  WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70

Query: 527 DE 528
            +
Sbjct: 71  TQ 72

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 269
            V  G ++   D +  + + K   TI S   GTV+KV+Y EG  A    PL++ E E+  
Sbjct: 29  FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESD 88

Query: 270 VAAEEADS 277
               E+  
Sbjct: 89  KRESESGP 96

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 32/68 (47%)

Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 529
            V  G ++   D +  + + K   TI S   GTV+KV+Y EG  A    PL++ E E+  
Sbjct: 29  FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESD 88

Query: 530 VAAEEADS 537
               E+  
Sbjct: 89  KRESESGP 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1045
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.97
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	99.95
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.95
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	99.94
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	99.92
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.91
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.7
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.68
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.66
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.66
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.63
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.61
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.59
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.59
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.58
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.57
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.55
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.52
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.52
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.51
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.5
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.45
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.45
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.44
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.42
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.4
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.37
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.3
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.29
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.17
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.15
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.12
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.12
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.05
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.04
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.02
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.02
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.01
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.0
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.0
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.0
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	98.99
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	98.98
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.97
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.97
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	98.95
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	98.93
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	98.93
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	98.88
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	98.87
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.85
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.84
2coo_A	70	Lipoamide acyltransferase component of branched- c	98.83
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	98.82
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.81
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.77
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	98.77
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.75
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.73
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.69
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	98.65
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.63
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	98.62
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	98.6
3rnm_E	58	Lipoamide acyltransferase component of branched-C	98.59
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	98.59
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.58
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.57
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.54
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	98.5
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.46
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.44
2coo_A	70	Lipoamide acyltransferase component of branched- c	98.4
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.35
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	98.3
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.29
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.29
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	98.26
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.23
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.17
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.15
1hpc_A	131	H protein of the glycine cleavage system; transit	98.14
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.14
1hpc_A	131	H protein of the glycine cleavage system; transit	97.73
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	97.73
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	97.7
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.3
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.21
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.19
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.15
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.11
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.01
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.0
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	96.97
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	96.9
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	96.87
3klr_A	125	Glycine cleavage system H protein; antiparallel be	96.85
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	96.8
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	96.75
3mxu_A	143	Glycine cleavage system H protein; seattle structu	96.67
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	96.55
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	96.53
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	96.41
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	96.02
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	95.74
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	95.02
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	94.53
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	94.29
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	93.61
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	93.55
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	92.88
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	92.65
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	92.09
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	91.72
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	90.79
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	90.06
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	89.84
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	89.54
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	88.67
2qj8_A	332	MLR6093 protein; structural genomics, joint center	88.19
4b4t_U	338	RPN8, 26S proteasome regulatory subunit RPN8; hydr	86.46
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	86.44
2xha_A	193	NUSG, transcription antitermination protein NUSG;	86.14
2qj8_A	332	MLR6093 protein; structural genomics, joint center	82.82
2xha_A	193	NUSG, transcription antitermination protein NUSG;	82.01
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	80.25

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=6.4e-80  Score=715.98  Aligned_cols=401  Identities=32%  Similarity=0.513  Sum_probs=39.5

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .++|+||+||++|+||+|++|+  |++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.+
T Consensus         2 ~~~i~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (428)
T 3dva_I            2 AFEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   79 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeeEEcCCCCCCCccEEEEEEE--cCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            4689999999999999999999  99999999999999999999999999999999999999999999999999999865


Q ss_pred             Cccccccc-----cc---cccc-c--CC------CC--C--C-CCCCCCCCCCccccccCCCCCCCcCccccCCCCCccc
Q psy6394         527 DEGVAAEE-----AD---SLDR-K--AA------PG--V--S-EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVL  584 (1045)
Q Consensus       527 ~~~~~~~~-----~~---~~~~-~--~~------~~--~--~-~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~  584 (1045)
                      ++..+...     ..   +.+. .  +.      +.  .  . ......+++||++||||+|+||||+.|+|||++|||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~  159 (428)
T 3dva_I           80 GYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVL  159 (428)
T ss_dssp             ------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCC
T ss_pred             CccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCcee
Confidence            44321110     00   0000 0  00      00  0  0 0012346899999999999999999999999999999


Q ss_pred             hHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCC
Q psy6394         585 KEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSD  664 (1045)
Q Consensus       585 k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~  664 (1045)
                      |+||++|++.......++.+++  .                                                 ...++ 
T Consensus       160 k~DV~~~~~~~~~~~~~~~~~~--~-------------------------------------------------~~~~~-  187 (428)
T 3dva_I          160 KEDIDAFLAGGAKPAPAAAEEK--A-------------------------------------------------APAAA-  187 (428)
T ss_dssp             TTTTTTTSCC----------------------------------------------------------------------
T ss_pred             HHHHHHHhhccccccccccccc--c-------------------------------------------------ccCCC-
Confidence            9999999764321100000000  0                                                 00000 


Q ss_pred             CCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHH
Q psy6394         665 ETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKAL  743 (1045)
Q Consensus       665 ~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAv  743 (1045)
                        .+. ........+++||++|||.||++|.+| +++||+|++.+||+|+|+++|+++++..++.+ .|+||++|++||+
T Consensus       188 --~~~-~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk~~~~~~~~~g-~kls~~~~~ikAv  263 (428)
T 3dva_I          188 --KPA-TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKG-IKLTFLPYVVKAL  263 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --Ccc-ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHHHhhhhHhhcC-CCcCHHHHHHHHH
Confidence              000 000112366789999999999999999 79999999999999999999999997655556 9999999999999


Q ss_pred             HHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCc
Q psy6394         744 SLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGT  823 (1045)
Q Consensus       744 a~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggT  823 (1045)
                      ++||++||+||++|++++++|++++++|||+||++++||++|||++++.+++.+|+++++++.+++|+|+|+++|++|||
T Consensus       264 a~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggt  343 (428)
T 3dva_I          264 VSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGAS  343 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCE
Confidence            99999999999999865578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccc
Q psy6394         824 ISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILV  903 (1045)
Q Consensus       824 ftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile  903 (1045)
                      |||||+|+||+++|+||||+||+|||++|+++++|++ .+|++++|++|+++|+||||||||+++++||+.|+++   |+
T Consensus       344 ftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~-~~g~i~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~---Le  419 (428)
T 3dva_I          344 CTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRL---LS  419 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEcCCCCCccceEeecCCCCceEEEccccEEEEEE-ECCEEEEeeeEEEEEEecccccchHHHHHHHHHHHHH---Hh
Confidence            9999999999999999999999999999999999999 6889999999999999999999999999999999999   99


Q ss_pred             cCCcce
Q psy6394         904 NPDHNI  909 (1045)
Q Consensus       904 ~p~v~I  909 (1045)
                      +|..++
T Consensus       420 ~P~~ll  425 (428)
T 3dva_I          420 DPELLL  425 (428)
T ss_dssp             ------
T ss_pred             CHHHHh
Confidence            998664

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=5.8e-53  Score=457.73  Aligned_cols=227  Identities=29%  Similarity=0.437  Sum_probs=216.7

Q ss_pred             CcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccc
Q psy6394         676 EASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILN  754 (1045)
Q Consensus       676 ~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lN  754 (1045)
                      +..+++|++++||+||++|.+| +++||+|++.++|+|+|+++|+++|+.+.+..+.|+|+++|++||+++||++||+||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            4578899999999999999999 799999999999999999999999986655433899999999999999999999999


Q ss_pred             eEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccc
Q psy6394         755 ASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG  834 (1045)
Q Consensus       755 a~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~  834 (1045)
                      ++|++  +.+++++++|||+||++++||+||||+|+|.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+
T Consensus        96 a~~~~--~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~  173 (256)
T 3mae_A           96 STWAG--DKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS  173 (256)
T ss_dssp             EEEET--TEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred             hEEec--CEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence            99984  6899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         835 TLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       835 ~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      .+|+|||||||+||||+|+++++|+++ +|+++++++|+++|++|||||||+++|+||+.++++   +|+|..+
T Consensus       174 ~~ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~---Le~P~~~  243 (256)
T 3mae_A          174 VQSMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKAN---VEKISKE  243 (256)
T ss_dssp             SEEECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHTCCTT
T ss_pred             cceEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHH---HhChHHH
Confidence            999999999999999999999999994 689999999999999999999999999999999999   9999754

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=1.1e-52  Score=457.79  Aligned_cols=229  Identities=42%  Similarity=0.751  Sum_probs=218.1

Q ss_pred             CcceeeecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394         676 EASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA  755 (1045)
Q Consensus       676 ~~~~~~pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa  755 (1045)
                      ...+++|++++||.||++|.+|+++||+|++.++|+|+|+++|+++|+...+.| .|+|+++|++||+++||++||+||+
T Consensus        29 ~~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g-~kls~~~~~ikAva~Al~~~P~~Na  107 (262)
T 2ii3_A           29 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARG-IKLSFMPFFLKAASLGLLQFPILNA  107 (262)
T ss_dssp             CCCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTT-CCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred             CCcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhcc-CCccHHHHHHHHHHHHHHhChHhhE
Confidence            356788999999999999999977999999999999999999999997555555 8999999999999999999999999


Q ss_pred             EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394         756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT  835 (1045)
Q Consensus       756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~  835 (1045)
                      +|+++++++++++++|||+||++++||++|||++++.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+.
T Consensus       108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~  187 (262)
T 2ii3_A          108 SVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGT  187 (262)
T ss_dssp             EECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCS
T ss_pred             EEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCcc
Confidence            99875578999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      +|+|||||||+||||+|+++++|+++.||+++++++|+++|+||||+|||+++|+||+.++++   +++|..+
T Consensus       188 ~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~---Le~P~~l  257 (262)
T 2ii3_A          188 YAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSY---LENPAFM  257 (262)
T ss_dssp             CEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHSTHHH
T ss_pred             ceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHH---HhCHHHH
Confidence            999999999999999999999999966789999999999999999999999999999999999   9998754

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=5e-52  Score=448.84  Aligned_cols=228  Identities=25%  Similarity=0.414  Sum_probs=217.4

Q ss_pred             cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394         677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA  755 (1045)
Q Consensus       677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa  755 (1045)
                      ..+++|++++||.||++|.+| +++||+|++.++|+|+|+++|+++|+...+.| .++|+++|++||+++||++||+||+
T Consensus        14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g-~kls~~~~~ikA~~~Al~~~P~~Na   92 (243)
T 1dpb_A           14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAG-VKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTT-CCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhcc-CCCChHHHHHHHHHHHHHhChHhhE
Confidence            456789999999999999999 79999999999999999999999997655556 8999999999999999999999999


Q ss_pred             EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394         756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT  835 (1045)
Q Consensus       756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~  835 (1045)
                      +|+++++++++++++|||+||++++||++|||+++|.+++.+|+++++++++++|+|+|+++|++||||||||+|++|+.
T Consensus        93 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~  172 (243)
T 1dpb_A           93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT  172 (243)
T ss_dssp             EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred             EEecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcc
Confidence            99865578999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      +|+|||||||+||||+|+++++|+++ +|+++++++|+++|++|||+|||+++|+||+.++++   +|+|..++
T Consensus       173 ~~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~---le~p~~ll  242 (243)
T 1dpb_A          173 AFTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDL---LADIRAIL  242 (243)
T ss_dssp             CCCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHH---HHCGGGGG
T ss_pred             ceECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHH---HhCHHhhh
Confidence            99999999999999999999999994 789999999999999999999999999999999999   99997653

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=2.2e-52  Score=451.65  Aligned_cols=218  Identities=23%  Similarity=0.391  Sum_probs=209.7

Q ss_pred             ecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCC
Q psy6394         682 PIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPT  760 (1045)
Q Consensus       682 pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~  760 (1045)
                      |++++||+||++|.+| +++||+|++.+||+|+|+++|+++|+    .+ .|+|+++|++||+++||++||+||++|+++
T Consensus        18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~-~kls~~~~iikAva~AL~~~P~~Na~~~~~   92 (250)
T 3l60_A           18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AA-PEITPFALTLRLLVIALKHNVILNSTWVDS   92 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TC-TTCCHHHHHHHHHHHHHHHCGGGSEEEECT
T ss_pred             CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cC-CCCCHHHHHHHHHHHHHHhCHHhhEEEecc
Confidence            9999999999999999 79999999999999999999999874    35 899999999999999999999999999864


Q ss_pred             --CceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeec
Q psy6394         761 --QENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQ  838 (1045)
Q Consensus       761 --~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~t  838 (1045)
                        +++|++++++|||+||++++||++|||+|++.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+.+|+
T Consensus        93 ~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ft  172 (250)
T 3l60_A           93 GEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGV  172 (250)
T ss_dssp             TTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCC
T ss_pred             CCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeE
Confidence              469999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         839 PIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       839 pii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      |||||||+||||+|+++++|++ .+|+++++++|+++|+||||||||+++|+||+.++++   +|+|..+
T Consensus       173 pIinppq~aIL~vG~i~~~pv~-~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~---Le~P~~l  238 (250)
T 3l60_A          173 PVINHPEAAILGLGAIKPRPVV-VGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDL---IESPETA  238 (250)
T ss_dssp             CCCCTTCSEEEEECCCEEEEEE-ETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHSHHHH
T ss_pred             eeeCCCCceEEEecceEEEeEE-ECCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHH---HhCHHHH
Confidence            9999999999999999999999 4789999999999999999999999999999999999   9998654

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=5.4e-52  Score=445.88  Aligned_cols=225  Identities=25%  Similarity=0.453  Sum_probs=214.1

Q ss_pred             ceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceE
Q psy6394         678 SNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNAS  756 (1045)
Q Consensus       678 ~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~  756 (1045)
                      .+++|++++||.||++|.+| +++||+|++.++|+|+|+++|+++|+.+.+..|.|+|+++|++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            45679999999999999999 78999999999999999999999997654433389999999999999999999999999


Q ss_pred             EcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCcccee
Q psy6394         757 IDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTL  836 (1045)
Q Consensus       757 ~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~  836 (1045)
                      |++  +++++++++|||+||++++||++|||++++.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+.+
T Consensus        84 ~~~--~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~  161 (233)
T 1scz_A           84 IDG--DDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM  161 (233)
T ss_dssp             EET--TEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred             EeC--CEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence            984  689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         837 VQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       837 ~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      |+|||||||+||||+|+++++|++ .+|+++++++|+++|++|||+|||+++|+||+.++++   +|+|..+
T Consensus       162 ~tpIin~pq~aIl~vG~~~~~pv~-~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~---le~p~~l  229 (233)
T 1scz_A          162 STPIINPPQSAILGMHAIKDRPMA-VNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKEL---LEDPTRL  229 (233)
T ss_dssp             CCCCCCTTCSEEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHCTTHH
T ss_pred             eEcccCCCCcEEEEccccEEEEEE-ECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHH---HhCHHHH
Confidence            999999999999999999999999 4789999999999999999999999999999999999   9999754

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=3.1e-50  Score=429.74  Aligned_cols=216  Identities=27%  Similarity=0.443  Sum_probs=206.3

Q ss_pred             cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394         677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA  755 (1045)
Q Consensus       677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa  755 (1045)
                      ..+++|++++||+||++|.+| +++||+|++.++|+|+|+++|+++|+    .| .|+|+++|++||+++||++||+||+
T Consensus         5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~----~g-~kls~~~~~ikA~~~Al~~~P~~N~   79 (224)
T 3rqc_A            5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA----RN-RKVTVTGFLARIVPSILKQYPYLNA   79 (224)
T ss_dssp             -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT----TT-CCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred             CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh----cC-CCCCHHHHHHHHHHHHHHhCHHhhe
Confidence            467889999999999999999 89999999999999999999999885    25 8999999999999999999999999


Q ss_pred             EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394         756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT  835 (1045)
Q Consensus       756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~  835 (1045)
                      +|+++.+++++++++|||+||++++||++|||+++|.+++.+|+++++++++++|+|+|+++|++||||||||+|++|+.
T Consensus        80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~  159 (224)
T 3rqc_A           80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGI  159 (224)
T ss_dssp             BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCS
T ss_pred             EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCcc
Confidence            99875568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      +|+|||||||+||||+|+++++|+         +++|+++|++|||+|||+++|+||+.++++   +|+|..++
T Consensus       160 ~~tpiin~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~---le~p~~ll  221 (224)
T 3rqc_A          160 MSTPIINYPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKV---IEDPNAII  221 (224)
T ss_dssp             EEECCCCTTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHH---HTCTTTTT
T ss_pred             ceEeccCCCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHH---HhCHHHHh
Confidence            999999999999999999999886         789999999999999999999999999999   99998664

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=1e-50  Score=438.08  Aligned_cols=226  Identities=27%  Similarity=0.365  Sum_probs=214.2

Q ss_pred             CcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccc
Q psy6394         676 EASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILN  754 (1045)
Q Consensus       676 ~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lN  754 (1045)
                      +..+++|++++||.||++|.+| +++||+|++.++|+|+|+++|+++|+.... + .++|+++|++||+++||++||+||
T Consensus        10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~-~kls~~~~~ikAv~~Al~~~P~~N   87 (239)
T 3b8k_A           10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG-R-SKISVNDFIIKASALACLKVPEAN   87 (239)
T ss_dssp             CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT-S-SCCCHHHHHHHHHHHHHHHCCCSC
T ss_pred             CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc-c-CCCCHHHHHHHHHHHHHHhChHhh
Confidence            3467789999999999999999 899999999999999999999999975433 3 599999999999999999999999


Q ss_pred             eEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccc
Q psy6394         755 ASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG  834 (1045)
Q Consensus       755 a~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~  834 (1045)
                      ++|++  +++++++++|||+||++++||++|||+++|.+++.+|+++++++++++|+|+|+++|++||||||||+|++|+
T Consensus        88 a~~~~--~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~  165 (239)
T 3b8k_A           88 SSWMD--TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGI  165 (239)
T ss_dssp             TTSCC--CSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCC
T ss_pred             EEEEC--CEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCc
Confidence            99984  6799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccceeeEeeccceeEeEec-cCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394         835 TLVQPIIVPGQVCIVAFGKIQLLPRFD-AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN  908 (1045)
Q Consensus       835 ~~~tpii~~pq~ailavG~i~~~p~~~-~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~  908 (1045)
                      ++|+||+||||+|||++|+++++|+++ .+|+++++++|+++|++|||+|||+++|+||+.++++   +|+|..+
T Consensus       166 ~~ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~---le~p~~l  237 (239)
T 3b8k_A          166 KNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKY---LEKPITM  237 (239)
T ss_dssp             SSCCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHH---HHCTHHH
T ss_pred             eeEECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHH---HhCHHhh
Confidence            999999999999999999999999995 5789999999999999999999999999999999999   9998654

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=4.9e-41  Score=360.82  Aligned_cols=197  Identities=23%  Similarity=0.376  Sum_probs=169.5

Q ss_pred             ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394         789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV  867 (1045)
Q Consensus       789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~  867 (1045)
                      ++|...+.++++++++...+.+..|+++.+                     ++      +.++. ++++.|.+       
T Consensus        35 evdvt~l~~~r~~~k~~~~~~~g~kls~~~---------------------~~------ikA~~~Al~~~P~~-------   80 (233)
T 1scz_A           35 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMS---------------------FY------VKAVVEALKRYPEV-------   80 (233)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHSSCCCSHH---------------------HH------HHHHHHHHHHCTTT-------
T ss_pred             EEEcHHHHHHHHHHHhhhhhhcCCcccHHH---------------------HH------HHHHHHHHHhChHh-------
Confidence            455667888888888755444455666543                     22      23333 35677765       


Q ss_pred             EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394         868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH  947 (1045)
Q Consensus       868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~  947 (1045)
                           |.+|..                    ++|+++..+|+|+||++++||++|||+||+++++.+|+++++++++++|
T Consensus        81 -----Na~~~~--------------------~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar  135 (233)
T 1scz_A           81 -----NASIDG--------------------DDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGR  135 (233)
T ss_dssp             -----TCEEET--------------------TEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTT
T ss_pred             -----hEEEeC--------------------CEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence                 455531                    2347888999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394         948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus       948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
                      +|+|+++||+||||||||+|++|+..|+|||||||+||||+|++.++||+++| ++++|++|+||||||||+|||++||+
T Consensus       136 ~~kL~~~e~~ggtftISnlG~~G~~~~tpIin~pq~aIl~vG~~~~~pv~~~g-~i~~r~~m~lsls~DHRviDGa~aa~  214 (233)
T 1scz_A          136 DGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNG-QVEILPMMYLALSYDHRLIDGRESVG  214 (233)
T ss_dssp             TTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred             cCCCCccccCCCEEEEEeCCCCCccceEcccCCCCcEEEEccccEEEEEEECC-EEEEEEEEEEEEEEcceeechHHHHH
Confidence            99999999999999999999999999999999999999999999999999775 89999999999999999999999999


Q ss_pred             HHHHHHHhhcCcchhccC
Q psy6394        1028 AATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus      1028 fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ||+.|+++||+|..||++
T Consensus       215 Fl~~lk~~le~p~~ll~~  232 (233)
T 1scz_A          215 FLVTIKELLEDPTRLLLD  232 (233)
T ss_dssp             HHHHHHHHHHCTTHHHHT
T ss_pred             HHHHHHHHHhCHHHHhhc
Confidence            999999999999988764

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=7.4e-41  Score=362.87  Aligned_cols=215  Identities=25%  Similarity=0.336  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCC
Q psy6394         738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPR  817 (1045)
Q Consensus       738 ~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~  817 (1045)
                      .+.+.+.++....|.+....                               ++|...+.++++++++..++....|+++.
T Consensus        29 ~ia~~m~~S~~~iP~~t~~~-------------------------------evDvt~l~~~r~~~k~~~~~~~g~kls~~   77 (256)
T 3mae_A           29 AIAKHMSVSKQEIPHAWMMV-------------------------------EVDATGLVRYRNAVKDSFKKEEGYSLTYF   77 (256)
T ss_dssp             HHHHHHHHHHHHSCEEEEEE-------------------------------EEECHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHHhccCCeEEEEE-------------------------------EEEHHHHHHHHHHHHhhhhhhcCCCccHH
Confidence            45666667777778665433                               45566788888888875544444566553


Q ss_pred             ccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhh
Q psy6394         818 DIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWK  896 (1045)
Q Consensus       818 d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~  896 (1045)
                                           +++      +.++. ++++.|.+            |.+|..|                 
T Consensus        78 ---------------------~~i------ikAva~AL~~~P~~------------Na~~~~~-----------------  101 (256)
T 3mae_A           78 ---------------------AFF------IKAVAQALKEFPQL------------NSTWAGD-----------------  101 (256)
T ss_dssp             ---------------------HHH------HHHHHHHHHHCTTT------------SEEEETT-----------------
T ss_pred             ---------------------HHH------HHHHHHHHHhCHHh------------hhEEecC-----------------
Confidence                                 332      22333 34666764            5666422                 


Q ss_pred             hcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceee
Q psy6394         897 SLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQP  976 (1045)
Q Consensus       897 ~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~  976 (1045)
                         +|+++..+||||||++++||+||||+|+|+++|.+|++++++|+++||+|+|.++|++||||||||+|++|++.|+|
T Consensus       102 ---~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftp  178 (256)
T 3mae_A          102 ---KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMG  178 (256)
T ss_dssp             ---EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSEEEC
T ss_pred             ---EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccceEc
Confidence               34778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhc
Q psy6394         977 IIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLL 1043 (1045)
Q Consensus       977 iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll 1043 (1045)
                      ||||||+||||+|++.++||+++| ++++|++|+||||||||+|||++||+||+.|+++||||..|.
T Consensus       179 IInppq~aIL~vG~i~~~pv~~~g-~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~  244 (256)
T 3mae_A          179 IINHPQAAILQVESIVKRPVIIDD-MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKEN  244 (256)
T ss_dssp             CCCTTSSEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTT
T ss_pred             ccCCCCceEEEecccEEEEEEECC-EEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHH
Confidence            999999999999999999999876 899999999999999999999999999999999999998764

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=4.9e-40  Score=355.20  Aligned_cols=144  Identities=27%  Similarity=0.469  Sum_probs=139.7

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV  979 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin  979 (1045)
                      +|+++..+|+|+||++++||++|||+|+|++++.+|+++++++++++|+|+|+++|++||||||||+|++|++.|+||||
T Consensus       100 ~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~tpIin  179 (243)
T 1dpb_A          100 ALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVN  179 (243)
T ss_dssp             CEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCCCCCCC
T ss_pred             eEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceECccC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      |||+||||+|++.++||+++| ++++|++|+||||||||+|||++||+||+.|+++||+|..||+
T Consensus       180 ~pq~aIl~vG~~~~~pv~~~g-~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  243 (243)
T 1dpb_A          180 APEVAILGVSKASMQPVWDGK-AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             TTSSEEEEECCCEEEEEECSS-SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             CCCCeEEEccccEEEEEEECC-eEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999765 8999999999999999999999999999999999999998875

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.3e-40  Score=420.72  Aligned_cols=211  Identities=20%  Similarity=0.328  Sum_probs=175.6

Q ss_pred             HhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCC--ceEEEcCCc
Q psy6394         693 SMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQ--ENILVNPDH  770 (1045)
Q Consensus       693 ~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~--~~i~~~~~v  770 (1045)
                      +|.+|.++||+|++.++|+|+|+++|+++|+.+.+..+.|+|+++|++||+++||++||.||++|+++.  +.|++++++
T Consensus         1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v   80 (1113)
T 2xt6_A            1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT   80 (1113)
T ss_dssp             ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred             ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence            477888899999999999999999999999865554348999999999999999999999999998532  279999999


Q ss_pred             cEEEEEecC--CC---eeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccc
Q psy6394         771 NISIAIDTK--HG---LVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ  845 (1045)
Q Consensus       771 nIgiAV~t~--~G---L~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq  845 (1045)
                      ||||||+++  +|   |+||||||++.+++.+|+++++++++++|+|||+++|++||||||||+|+||+.+|+|||||||
T Consensus        81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq  160 (1113)
T 2xt6_A           81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ  160 (1113)
T ss_dssp             CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred             cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence            999999997  56   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEeeccceeEeEeccC-----CceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCC
Q psy6394         846 VCIVAFGKIQLLPRFDAE-----MRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD  906 (1045)
Q Consensus       846 ~ailavG~i~~~p~~~~~-----g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~  906 (1045)
                      +||||+|+++++|+++.+     |+++++++|+++|+||||||||+++|+||+.++++   +++|.
T Consensus       161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~---Le~p~  223 (1113)
T 2xt6_A          161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQL---LLDDD  223 (1113)
T ss_dssp             SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHH---TTCHH
T ss_pred             ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHH---HhCcH
Confidence            999999999999998531     68999999999999999999999999999999999   99865

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=2.8e-40  Score=360.14  Aligned_cols=145  Identities=48%  Similarity=0.855  Sum_probs=139.5

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV  979 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin  979 (1045)
                      +|+++..+||||||++++||++|||+||+++++.+|+++++++++++|+|+|+++||+||||||||+|++|+++|+||||
T Consensus       115 ~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~tPIin  194 (262)
T 2ii3_A          115 NITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVIL  194 (262)
T ss_dssp             EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCEECCCC
T ss_pred             EEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccceECccC
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      |||+||||+|++.++||+++++++++|++|+||||||||+|||+++|+||+.|+++||||..||+
T Consensus       195 ppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~  259 (262)
T 2ii3_A          195 PPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL  259 (262)
T ss_dssp             TTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHH
T ss_pred             CCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHh
Confidence            99999999999999999974458999999999999999999999999999999999999998875

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=9.8e-40  Score=352.95  Aligned_cols=145  Identities=27%  Similarity=0.442  Sum_probs=140.8

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV  979 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin  979 (1045)
                      +|+++..+||||||++++||+||||+|+|++++.+|++++++|++++|+|+|.++||+||||||||+|++|++.|+||||
T Consensus        97 ~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIin  176 (250)
T 3l60_A           97 QVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN  176 (250)
T ss_dssp             EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCC
T ss_pred             eEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeC
Confidence            45888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      |||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+||+.|+++||||..|+.+
T Consensus       177 ppq~aIL~vG~i~~~pv~~~g-~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~  241 (250)
T 3l60_A          177 HPEAAILGLGAIKPRPVVVGG-EVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLD  241 (250)
T ss_dssp             TTCSEEEEECCCEEEEEEETT-EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTT
T ss_pred             CCCceEEEecceEEEeEEECC-EEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCc
Confidence            999999999999999999876 89999999999999999999999999999999999999998754

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=338.70  Aligned_cols=145  Identities=30%  Similarity=0.445  Sum_probs=138.9

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV  979 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin  979 (1045)
                      +|+++..+|+|+||++++||++|||+|+|++++.+|+++++++++++|+|+|+++||+||||||||+|++|++.|+||||
T Consensus        94 ~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ftpiin  173 (239)
T 3b8k_A           94 VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIIN  173 (239)
T ss_dssp             SSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCCCCCC
T ss_pred             EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEECcCC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecceeEEeEEe-cCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         980 PRQVCIVAFGKIQLLPRFD-AEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       980 ~pq~ail~vG~i~~~pv~~-~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      |||+||||+|+++++||++ .++++++|++|+||||||||+|||++||+||+.|+++||||..||+
T Consensus       174 ~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  239 (239)
T 3b8k_A          174 PPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL  239 (239)
T ss_dssp             TTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred             CCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence            9999999999999999994 3348999999999999999999999999999999999999998875

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=2e-37  Score=330.83  Aligned_cols=137  Identities=28%  Similarity=0.461  Sum_probs=132.4

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV  979 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin  979 (1045)
                      +|+++..+|+|+||++++||+||||+|+|++++.+|+++++++++++|+|+|.++|++||||||||+|++|++.|+||||
T Consensus        87 ~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpiin  166 (224)
T 3rqc_A           87 VYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIIN  166 (224)
T ss_dssp             CCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCCC
T ss_pred             EEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEeccC
Confidence            45888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      |||+||||+|++.++|+         |++|+||||||||+|||++||+||+.|+++||||..||++
T Consensus       167 ~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~  223 (224)
T 3rqc_A          167 YPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYE  223 (224)
T ss_dssp             TTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC-
T ss_pred             CCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhc
Confidence            99999999999999886         7899999999999999999999999999999999999875

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=5.8e-38  Score=364.30  Aligned_cols=145  Identities=32%  Similarity=0.581  Sum_probs=0.0

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV  979 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin  979 (1045)
                      +|+++.++|||+||++++||+||||+|+++++|.+|++++++|++++|+|+|.++||+||||||||+|+||+++|+||||
T Consensus       283 ~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin  362 (428)
T 3dva_I          283 EIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVIN  362 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecC
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      |||+||||+|++.++||+.+| ++++|++|+||||||||+|||+++++||++|+++||||.+||++
T Consensus       363 ~pq~aIl~vG~i~~~pv~~~g-~i~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~  427 (428)
T 3dva_I          363 HPEVAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME  427 (428)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CCCceEEEccccEEEEEEECC-EEEEeeeEEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhhc
Confidence            999999999999999999665 89999999999999999999999999999999999999999874

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=3.8e-35  Score=312.22  Aligned_cols=184  Identities=14%  Similarity=0.126  Sum_probs=165.3

Q ss_pred             HhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccE
Q psy6394         693 SMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNI  772 (1045)
Q Consensus       693 ~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnI  772 (1045)
                      ..-.+.++||+|++.++|+|+|+++|++          .++|+++|++||+++||++||+||++|+  ++.+++++++||
T Consensus        23 ~~f~~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~--~~~i~~~~~v~i   90 (219)
T 1q23_A           23 EAFQSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMK--DGELVIWDSVHP   90 (219)
T ss_dssp             HHHTTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEE--TTEEEEESCCEE
T ss_pred             HHhcCCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEE--CCEEEEecccCe
Confidence            3445578999999999999999999853          4799999999999999999999999998  478999999999


Q ss_pred             EEEE-ecCCCeeeeeecccccccHHHHHHHHHHHHhccccC-CCCC-CccCCCceEeeccCCccceeecccccccc----
Q psy6394         773 SIAI-DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQPIIVPGQ----  845 (1045)
Q Consensus       773 giAV-~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~-~d~~ggTftISNlG~~G~~~~tpii~~pq----  845 (1045)
                      |+|| ++++||++||++. ..+++.+|+++++++++++|+| +|++ +|+ ||||||||+|++|   |+|++|+|+    
T Consensus        91 giAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~---ft~i~~~~~~~~~  165 (219)
T 1q23_A           91 CYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVS---FTSFDLNVANMDN  165 (219)
T ss_dssp             EEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCC---CSEEEEEESCCTT
T ss_pred             EEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCcccc---ccccccCCCCCcc
Confidence            9999 9999999999986 5689999999999999999998 6976 899 9999999999976   566666664    


Q ss_pred             --eeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccC
Q psy6394         846 --VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP  905 (1045)
Q Consensus       846 --~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p  905 (1045)
                        ++|+++|+++++     +|    +++|+++|++|||+|||+++|+||+.++++   +|+|
T Consensus       166 ~~~pIi~~G~~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~---le~~  215 (219)
T 1q23_A          166 FFAPVFTMGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQY---CDEW  215 (219)
T ss_dssp             CCSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHHC
T ss_pred             ceeEEEecccEEEE-----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHH---HhCc
Confidence              599999999865     23    699999999999999999999999999999   8875

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=1.3e-34  Score=307.14  Aligned_cols=187  Identities=14%  Similarity=0.145  Sum_probs=164.9

Q ss_pred             HhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccE
Q psy6394         693 SMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNI  772 (1045)
Q Consensus       693 ~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnI  772 (1045)
                      ..-.+.++||+|++.++|+|+|+++|++          .++|+++|++||+++||++||++|++|+  ++.+++++++||
T Consensus        18 ~~f~~~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~--~~~i~~~~~v~i   85 (213)
T 3cla_A           18 EFYRHRLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIK--DDELIVWDSVDP   85 (213)
T ss_dssp             HHHHHTSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEE--TTEEEEESCCEE
T ss_pred             HHHhCCCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEE--CCEEEEEeccce
Confidence            3444568999999999999999999852          5899999999999999999999999998  478999999999


Q ss_pred             EEEE-ecCCCeeeeeecccccccHHHHHHHHHHHHhccccC-CCCC-CccCCCceEeeccCCccceeeccccccc---ce
Q psy6394         773 SIAI-DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQPIIVPG---QV  846 (1045)
Q Consensus       773 giAV-~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~-~d~~ggTftISNlG~~G~~~~tpii~~p---q~  846 (1045)
                      |+|| ++++||++||+++ +.+++.+|+++++++++++|++ +|++ +|++||||||||+|+++.+.++..++.+   .+
T Consensus        86 giAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~  164 (213)
T 3cla_A           86 QFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFA  164 (213)
T ss_dssp             EEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCS
T ss_pred             eEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccc
Confidence            9999 9999999999987 5689999999999999999996 9988 7899999999999998765554333333   24


Q ss_pred             eeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhccccccc
Q psy6394         847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVN  904 (1045)
Q Consensus       847 ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~  904 (1045)
                      +|+++|+++++     +|    +++|+++|++|||+|||+++|+||+.++++   +|+
T Consensus       165 PIi~~G~~~~~-----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~---le~  210 (213)
T 3cla_A          165 PIITMAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQEL---CNS  210 (213)
T ss_dssp             CEEEEECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HTS
T ss_pred             cEEEeeEEEEE-----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHH---HHh
Confidence            78999999765     23    699999999999999999999999999999   886

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.5e-33  Score=294.86  Aligned_cols=190  Identities=15%  Similarity=0.136  Sum_probs=164.8

Q ss_pred             hHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEc
Q psy6394         688 KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVN  767 (1045)
Q Consensus       688 k~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~  767 (1045)
                      |+---....+.++||+|++.++|+|+|+++|++          .++|+++|++||+++||++||++|++|++ ++.++++
T Consensus        15 R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~-~~~i~~~   83 (217)
T 2i9d_A           15 RKENFNFFRHFQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDP-DGRVVLY   83 (217)
T ss_dssp             THHHHHHHTTCSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECT-TSCEEEE
T ss_pred             CHHHHHHHhCCCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcC-CCEEEEe
Confidence            333334444578999999999999999999853          47999999999999999999999999983 3689999


Q ss_pred             CCccEEEEE-ecCCCeeeeeecccccccHHHHHHHHHHHHhcccc-CCCCCC------ccCCCceEeeccCCccceeecc
Q psy6394         768 PDHNISIAI-DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHE-GKVLPR------DIQGGTISMSNVGNVGGTLVQP  839 (1045)
Q Consensus       768 ~~vnIgiAV-~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~-~kl~~~------d~~ggTftISNlG~~G~~~~tp  839 (1045)
                      +++|||+|| ++++||++||+.. ..+++.+|+++++++++++|+ |+|+++      |++||||||||+|+++.+.++.
T Consensus        84 ~~i~igvAVf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~  162 (217)
T 2i9d_A           84 DTIDMLSPIKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITG  162 (217)
T ss_dssp             SCCEEEEEEECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECC
T ss_pred             cccCeEEEEEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeec
Confidence            999999999 9999999999864 568999999999999999998 599995      9999999999999988666654


Q ss_pred             ccccc---ceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhc
Q psy6394         840 IIVPG---QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL  898 (1045)
Q Consensus       840 ii~~p---q~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~  898 (1045)
                      .++.+   .++|+++|++.++     +|    +++|+++|++|||+|||+++|+||+.++++
T Consensus       163 ~~~~g~~~~~PIi~~Gk~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~  215 (217)
T 2i9d_A          163 TQEKRSGNNYPLLNAGKAIIR-----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDF  215 (217)
T ss_dssp             CBCSTTCCSSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCccceEEEEecceEEEE-----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHH
Confidence            45444   2479999999764     23    799999999999999999999999999987

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.97  E-value=1.3e-33  Score=358.90  Aligned_cols=201  Identities=20%  Similarity=0.317  Sum_probs=150.5

Q ss_pred             ecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCc
Q psy6394         787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMR  865 (1045)
Q Consensus       787 Ir~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~  865 (1045)
                      ..++|...+.++++++++...+.+..|+++.                     +++      +.++. ++++.|.+     
T Consensus        14 ~~evDvt~l~~~R~~~k~~~~~~~g~kls~~---------------------~~i------ikAva~AL~~~P~~-----   61 (1113)
T 2xt6_A           14 VRAIPAKLMIDNRVVINNHLKRTRGGKISFT---------------------HLL------GYAIVQAVKKFPNM-----   61 (1113)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHTTCCCCCHH---------------------HHH------HHHHHHHHHHCGGG-----
T ss_pred             EEEEehHHHHHHHHHHHhhhhhhcCCCccHH---------------------HHH------HHHHHHHHHhChHh-----
Confidence            3467777888888899875554455566553                     332      22332 35677764     


Q ss_pred             eeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecC--Cc---eeeeeecccCCCCHHHHHHHHH
Q psy6394         866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTK--HG---LVVPNIKSVNKLSLLDITRELL  940 (1045)
Q Consensus       866 i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~--~G---L~vPvi~~a~~~sl~~ia~~~~  940 (1045)
                             |.+|..|.    |.            .+|+.+..+||||||+++  +|   |+|||||||++|+|.+|+++++
T Consensus        62 -------Na~~~~~~----~~------------~~i~~~~~vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~  118 (1113)
T 2xt6_A           62 -------NRHFAVVD----GK------------PTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYE  118 (1113)
T ss_dssp             -------GCEEEESS----SS------------EEEECCSSCCEEEEC-----------CEEEECCGGGCCHHHHHHHHH
T ss_pred             -------hEEEeccC----CC------------ceEEEeCcccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHH
Confidence                   55664321    10            135778899999999997  56   9999999999999999999999


Q ss_pred             HHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecC-----ceEEEEEEEEeeecc
Q psy6394         941 RIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAE-----MRVVAKCILNVTWAA 1015 (1045)
Q Consensus       941 ~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~-----~~~~~~~~m~ltls~ 1015 (1045)
                      +|+++||+|+|+++||+||||||||+|++|++.|+|||||||+||||+|++.++||++++     +++++|++|+|||||
T Consensus       119 ~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~  198 (1113)
T 2xt6_A          119 DIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTY  198 (1113)
T ss_dssp             HHHHHHTTTCCCGGGTSCCSEEEECC------------CTTCSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEE
T ss_pred             HHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCCceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999998651     478999999999999


Q ss_pred             cccccChHHHHHHHHHHHHhhcCcchh
Q psy6394        1016 DHRVVDGATVARAATLWKSLVENPALL 1042 (1045)
Q Consensus      1016 DHRviDG~~aa~fl~~~k~~le~P~~l 1042 (1045)
                      |||||||++||+||+.|+++||+|..|
T Consensus       199 DHRviDGa~aa~FL~~lk~~Le~p~~w  225 (1113)
T 2xt6_A          199 DHRIIQGAESGDFLRTIHQLLLDDDFF  225 (1113)
T ss_dssp             ETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcceechHHHHHHHHHHHHHHhCcHHH
Confidence            999999999999999999999999843

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=99.95  E-value=4.4e-28  Score=257.89  Aligned_cols=127  Identities=12%  Similarity=0.107  Sum_probs=113.6

Q ss_pred             cccccCCcceEEEE-ecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcC-CCCc-cccCCCceeeecCCCCCCcceee
Q psy6394         900 NILVNPDHNISIAI-DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQP  976 (1045)
Q Consensus       900 ~ile~p~v~Igiav-~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g-~l~~-~d~~ggTftiSNlG~~g~~~~~~  976 (1045)
                      +|+++..+|+|+|| ++++||++||++. ..+++.+|++++++++++||+| +|.+ +|+ ||||||||+|++|   |++
T Consensus        81 ~i~~~~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~---ft~  155 (219)
T 1q23_A           81 ELVIWDSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVS---FTS  155 (219)
T ss_dssp             EEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCC---CSE
T ss_pred             EEEEecccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCcccc---ccc
Confidence            45788899999999 9999999999997 5689999999999999999998 6976 899 9999999999975   566


Q ss_pred             eecCCc------eeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcc
Q psy6394         977 IIVPRQ------VCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPA 1040 (1045)
Q Consensus       977 iin~pq------~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~ 1040 (1045)
                      |+|+|+      ++||++|++.++    ++     |.+|+||||||||+|||++||+||+.|+++||+|.
T Consensus       156 i~~~~~~~~~~~~pIi~~G~~~~~----~~-----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~  216 (219)
T 1q23_A          156 FDLNVANMDNFFAPVFTMGKYYTQ----GD-----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ  216 (219)
T ss_dssp             EEEEESCCTTCCSCEEEECCCEEE----TT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCCCCCccceeEEEecccEEEE----CC-----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence            666665      699999999875    32     68999999999999999999999999999999863

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=99.94  E-value=8.5e-27  Score=247.12  Aligned_cols=129  Identities=14%  Similarity=0.130  Sum_probs=113.7

Q ss_pred             cccccCCcceEEEE-ecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcC-CCCc-cccCCCceeeecCCCCCCcceee
Q psy6394         900 NILVNPDHNISIAI-DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQP  976 (1045)
Q Consensus       900 ~ile~p~v~Igiav-~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g-~l~~-~d~~ggTftiSNlG~~g~~~~~~  976 (1045)
                      +|+++..+|+|+|| ++++||++||+++ +.+++.+|++++++++++||+| +|.+ +|++||||||||+||++.+.|..
T Consensus        76 ~i~~~~~v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~  154 (213)
T 3cla_A           76 ELIVWDSVDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNL  154 (213)
T ss_dssp             EEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCC
T ss_pred             EEEEEeccceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccc
Confidence            45788899999999 9999999999987 5699999999999999999996 9988 89999999999999987665543


Q ss_pred             eecCC---ceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcC
Q psy6394         977 IIVPR---QVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVEN 1038 (1045)
Q Consensus       977 iin~p---q~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~ 1038 (1045)
                      .++++   ..+|+++|++.++    ++     |++|+||||||||+|||++||+||+.|+++||+
T Consensus       155 ~~~~g~~~~~PIi~~G~~~~~----~~-----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~  210 (213)
T 3cla_A          155 NVANFTDYFAPIITMAKYQQE----GD-----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS  210 (213)
T ss_dssp             CCSCCTTCCSCEEEEECCEEE----TT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred             cCCCCCcccccEEEeeEEEEE----CC-----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence            33333   2589999999875    33     689999999999999999999999999999998

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=7.2e-25  Score=232.57  Aligned_cols=127  Identities=13%  Similarity=0.112  Sum_probs=111.8

Q ss_pred             cccccCCcceEEEE-ecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhc-CCCCcc------ccCCCceeeecCCCCCC
Q psy6394         900 NILVNPDHNISIAI-DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHE-GKVLPR------DIQGGTISMSNVGNVGG  971 (1045)
Q Consensus       900 ~ile~p~v~Igiav-~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~-g~l~~~------d~~ggTftiSNlG~~g~  971 (1045)
                      +|+++..+|+|+|| ++++||++||+.. ..+++.+|++++++++++||+ |+|.++      |++||||||||+|+++.
T Consensus        79 ~i~~~~~i~igvAVf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~f  157 (217)
T 2i9d_A           79 RVVLYDTIDMLSPIKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYF  157 (217)
T ss_dssp             CEEEESCCEEEEEEECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCC
T ss_pred             EEEEecccCeEEEEEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCcccc
Confidence            45788899999999 9999999999874 568999999999999999999 599995      99999999999999886


Q ss_pred             cceeeeecCC---ceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhh
Q psy6394         972 TLVQPIIVPR---QVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLV 1036 (1045)
Q Consensus       972 ~~~~~iin~p---q~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~l 1036 (1045)
                      +.++..++++   ..+|+++|++.++    ++     |.+|+||||||||+|||++||+||+.|+++|
T Consensus       158 t~i~~~~~~g~~~~~PIi~~Gk~~~~----~~-----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          158 TSITGTQEKRSGNNYPLLNAGKAIIR----EG-----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             SEECCCBCSTTCCSSCEEEECCCEEE----TT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             ceeecCCCCCccceEEEEecceEEEE----CC-----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            6665545544   2589999999875    32     6899999999999999999999999999986

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.70  E-value=8.2e-17  Score=156.34  Aligned_cols=91  Identities=21%  Similarity=0.348  Sum_probs=78.8

Q ss_pred             cccccccccceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-ee
Q psy6394         176 HHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VA  254 (1045)
Q Consensus       176 r~~~~s~~~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v  254 (1045)
                      |.+-......+.++|+||++|++|.+|+|++|+  |++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|
T Consensus        16 ~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~--V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V   93 (128)
T 1y8o_B           16 NLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDV   93 (128)
T ss_dssp             -------CCCSEEEEECCCSSTTCSEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSE
T ss_pred             cccCccccCCcceeEEcCCCCCCcccEEEEEEe--cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeee
Confidence            333333445567899999999999999999999  999999999999999999999999999999999999999998 89


Q ss_pred             cCCCeEEEEEecCc
Q psy6394         255 LVGKPLLDIEVEDE  268 (1045)
Q Consensus       255 ~vG~~l~~i~~~~~  268 (1045)
                      .+|++|++|+..++
T Consensus        94 ~~G~~L~~i~~~~~  107 (128)
T 1y8o_B           94 PLGTPLCIIVEKEA  107 (128)
T ss_dssp             ETTCEEEEEESSGG
T ss_pred             cCCCEEEEEecCcc
Confidence            99999999985443

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.68  E-value=9.9e-17  Score=151.83  Aligned_cols=83  Identities=27%  Similarity=0.337  Sum_probs=78.1

Q ss_pred             cceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEE
Q psy6394         184 RHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLD  262 (1045)
Q Consensus       184 ~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~  262 (1045)
                      +.|.++|+||++|++|.+|+|++|+  |++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++
T Consensus         4 ~p~~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~   81 (108)
T 2dne_A            4 GSSGQKVPLPSLSPTMQAGTIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICI   81 (108)
T ss_dssp             CCCCEEEECCCCSSSCCEEEEEECS--SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEE
T ss_pred             CccceEEecCCCCCCcccEEEEEEE--cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEE
Confidence            4456899999999999999999999  999999999999999999999999999999999999999999 8999999999


Q ss_pred             EEecCc
Q psy6394         263 IEVEDE  268 (1045)
Q Consensus       263 i~~~~~  268 (1045)
                      |...++
T Consensus        82 i~~~~~   87 (108)
T 2dne_A           82 TVGKPE   87 (108)
T ss_dssp             EESCHH
T ss_pred             EecCcc
Confidence            985543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.66  E-value=4.2e-16  Score=141.86  Aligned_cols=79  Identities=23%  Similarity=0.394  Sum_probs=75.6

Q ss_pred             eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEEEE
Q psy6394         186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIE  264 (1045)
Q Consensus       186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~i~  264 (1045)
                      +.++|+||++|+++.+|+|.+|+  |++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.
T Consensus         4 ~~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~   81 (87)
T 3crk_C            4 PHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (87)
T ss_dssp             CEEEEECCCSSTTCCEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred             cceEEeCCCCCCCCCcEEEEEEE--cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence            35789999999999999999999  999999999999999999999999999999999999999999 899999999998


Q ss_pred             ec
Q psy6394         265 VE  266 (1045)
Q Consensus       265 ~~  266 (1045)
                      .+
T Consensus        82 ~~   83 (87)
T 3crk_C           82 EK   83 (87)
T ss_dssp             SS
T ss_pred             cc
Confidence            44

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=146.15  Aligned_cols=80  Identities=29%  Similarity=0.425  Sum_probs=76.3

Q ss_pred             eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee-cCCCeEEEEE
Q psy6394         186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA-LVGKPLLDIE  264 (1045)
Q Consensus       186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v-~vG~~l~~i~  264 (1045)
                      +.++|+||++|++|.+|+|.+|+  |++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| .+|++|+.|.
T Consensus         6 ~~~~i~~P~lg~~~~~G~i~~~~--v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~   83 (98)
T 2dnc_A            6 SGIKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV   83 (98)
T ss_dssp             CCEEEECCCCSTTCSEECEEEES--SCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred             ccEEEECCCCCCCCccEEEEEEE--cCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence            45689999999999999999999  99999999999999999999999999999999999999999998 9999999998


Q ss_pred             ecC
Q psy6394         265 VED  267 (1045)
Q Consensus       265 ~~~  267 (1045)
                      ..+
T Consensus        84 ~~~   86 (98)
T 2dnc_A           84 EEG   86 (98)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            543

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.63  E-value=7.8e-16  Score=141.87  Aligned_cols=77  Identities=65%  Similarity=1.134  Sum_probs=74.9

Q ss_pred             eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .++|+||++|+++.+|+|.+|+  |++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|+.
T Consensus         4 ~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~   80 (93)
T 1k8m_A            4 VVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (93)
T ss_dssp             CEEEECCSSCTTSCCEEEEEEC--CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             ceEEEcCCCCCCCCCEEEEEEE--cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence            5689999999999999999999  9999999999999999999999999999999999999999999999999999974

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.61  E-value=2.5e-15  Score=145.92  Aligned_cols=83  Identities=23%  Similarity=0.386  Sum_probs=78.3

Q ss_pred             cceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEE
Q psy6394         444 RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLD  522 (1045)
Q Consensus       444 ~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~  522 (1045)
                      .++.++++||++|+++.+|+|++|+  |++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++
T Consensus        24 ~p~~~~i~~P~lG~~~~~G~V~~~~--V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~  101 (128)
T 1y8o_B           24 YPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI  101 (128)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred             CCcceeEEcCCCCCCcccEEEEEEe--cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence            4457899999999999999999999  999999999999999999999999999999999999999998 8999999999


Q ss_pred             EeecCc
Q psy6394         523 IEVEDE  528 (1045)
Q Consensus       523 i~~~~~  528 (1045)
                      |+..++
T Consensus       102 i~~~~~  107 (128)
T 1y8o_B          102 IVEKEA  107 (128)
T ss_dssp             EESSGG
T ss_pred             EecCcc
Confidence            986543

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=3.2e-15  Score=139.10  Aligned_cols=82  Identities=29%  Similarity=0.425  Sum_probs=77.5

Q ss_pred             ceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEE-ecCCceEEE
Q psy6394         445 HKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA-LVGKPLLDI  523 (1045)
Q Consensus       445 ~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v-~vg~~l~~i  523 (1045)
                      .+.++++||++|+++.+|+|.+|+  |++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+ .+|++|++|
T Consensus         5 ~~~~~i~~P~lg~~~~~G~i~~~~--v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i   82 (98)
T 2dnc_A            5 SSGIKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLI   82 (98)
T ss_dssp             CCCEEEECCCCSTTCSEECEEEES--SCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEE
T ss_pred             cccEEEECCCCCCCCccEEEEEEE--cCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEE
Confidence            356789999999999999999999  99999999999999999999999999999999999999999998 999999999


Q ss_pred             eecCc
Q psy6394         524 EVEDE  528 (1045)
Q Consensus       524 ~~~~~  528 (1045)
                      ...++
T Consensus        83 ~~~~~   87 (98)
T 2dnc_A           83 VEEGE   87 (98)
T ss_dssp             ECTTS
T ss_pred             ecCCC
Confidence            86543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.59  E-value=6.1e-15  Score=134.18  Aligned_cols=79  Identities=23%  Similarity=0.404  Sum_probs=75.8

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEEee
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIEV  525 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i~~  525 (1045)
                      .++++||++|+++.+|+|.+|+  |++||.|++||.|+++|+||+.++|+||++|+|.++++++|+ .|.+|++|++|..
T Consensus         5 ~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C            5 HMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             EEEEECCCSSTTCCEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred             ceEEeCCCCCCCCCcEEEEEEE--cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence            5789999999999999999999  999999999999999999999999999999999999999999 8999999999986


Q ss_pred             cC
Q psy6394         526 ED  527 (1045)
Q Consensus       526 ~~  527 (1045)
                      .+
T Consensus        83 ~~   84 (87)
T 3crk_C           83 KE   84 (87)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.58  E-value=3.8e-15  Score=140.96  Aligned_cols=82  Identities=27%  Similarity=0.344  Sum_probs=77.5

Q ss_pred             ceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEE
Q psy6394         445 HKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDI  523 (1045)
Q Consensus       445 ~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i  523 (1045)
                      ++.++++||++|+++.+|+|.+|+  |++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|
T Consensus         5 p~~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i   82 (108)
T 2dne_A            5 SSGQKVPLPSLSPTMQAGTIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT   82 (108)
T ss_dssp             CCCEEEECCCCSSSCCEEEEEECS--SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEE
T ss_pred             ccceEEecCCCCCCcccEEEEEEE--cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEE
Confidence            356889999999999999999999  999999999999999999999999999999999999999999 89999999999


Q ss_pred             eecCc
Q psy6394         524 EVEDE  528 (1045)
Q Consensus       524 ~~~~~  528 (1045)
                      ...++
T Consensus        83 ~~~~~   87 (108)
T 2dne_A           83 VGKPE   87 (108)
T ss_dssp             ESCHH
T ss_pred             ecCcc
Confidence            86543

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.57  E-value=5.6e-15  Score=131.82  Aligned_cols=75  Identities=21%  Similarity=0.455  Sum_probs=73.2

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ++++||++|+++.+|+|.+|+  |++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT   76 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCS--SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEEC
T ss_pred             cEEECCCCCCCCCCEEEEEEE--cCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            479999999999999999999  999999999999999999999999999999999999999999999999999986

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.55  E-value=1e-14  Score=134.44  Aligned_cols=78  Identities=64%  Similarity=1.125  Sum_probs=75.4

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .++++||++|+++.+|+|.+|+  |++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+.+|++|+.|+..
T Consensus         4 ~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~   81 (93)
T 1k8m_A            4 VVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (93)
T ss_dssp             CEEEECCSSCTTSCCEEEEEEC--CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             ceEEEcCCCCCCCCCEEEEEEE--cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            5789999999999999999999  99999999999999999999999999999999999999999999999999999754

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.52  E-value=2.4e-14  Score=127.88  Aligned_cols=76  Identities=29%  Similarity=0.461  Sum_probs=72.7

Q ss_pred             eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      .++|+||++|++  +|+|.+|+  +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|..+
T Consensus         2 ~~~i~~p~~g~~--~G~v~~~~--v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A            2 VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEECCCCCSSS--CEEEEECC--CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             CeEEECCCCCCC--CEEEEEEE--cCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            468999999998  89999999  99999999999999999999999999999999999999999999999999999743

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.52  E-value=2.2e-14  Score=127.21  Aligned_cols=75  Identities=43%  Similarity=0.720  Sum_probs=73.2

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ++++||++|+++.+|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECS--CCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEE--eCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            579999999999999999999  999999999999999999999999999999999999999999999999999985

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.51  E-value=1.1e-15  Score=136.70  Aligned_cols=75  Identities=19%  Similarity=0.384  Sum_probs=72.9

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .+++||++|+++.+|+|.+|+  |++||.|++||+||+||+||+..+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~   77 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCC--CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             cEEEcCCCCCCCccEEEEEEE--CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            479999999999999999999  999999999999999999999999999999999999999999999999999885

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.50  E-value=4.7e-14  Score=125.77  Aligned_cols=76  Identities=20%  Similarity=0.430  Sum_probs=73.6

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      ++++||++|+++.+|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCS--SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEE--cCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            578999999999999999999  9999999999999999999999999999999999999999999999999999864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.45  E-value=2.6e-13  Score=120.93  Aligned_cols=73  Identities=27%  Similarity=0.337  Sum_probs=70.0

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .+++||++|++  + +|.+|+  |++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|..
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~--v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~   74 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEEC--CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             cEEECCCCCCC--C-EEEEEe--cCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            36899999996  7 999999  9999999999999999999999999999999999999999999999999999974

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.45  E-value=2.4e-13  Score=121.34  Aligned_cols=76  Identities=30%  Similarity=0.474  Sum_probs=72.8

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .++++||++|++  +|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~~i~~p~~g~~--~G~v~~~~--v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A            2 VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEECCCCCSSS--CEEEEECC--CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             CeEEECCCCCCC--CEEEEEEE--cCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            468999999998  99999999  99999999999999999999999999999999999999999999999999999754

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.44  E-value=2.3e-13  Score=120.60  Aligned_cols=75  Identities=41%  Similarity=0.709  Sum_probs=73.0

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      +++++|++|+++.+|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECS--CCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEE--eCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            578999999999999999999  999999999999999999999999999999999999999999999999999885

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.42  E-value=1e-14  Score=130.48  Aligned_cols=76  Identities=18%  Similarity=0.367  Sum_probs=73.1

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      ++++||++|+++.+|+|.+|+  +++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.+..|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCC--CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEE--CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            468899999999999999999  9999999999999999999999999999999999999999999999999998853

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.40  E-value=1.1e-13  Score=123.90  Aligned_cols=76  Identities=30%  Similarity=0.460  Sum_probs=72.2

Q ss_pred             eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .++|+||++| ++..|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEEC--CCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             cEEEEcCCCC-CCCcEEEEEEE--cCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence            3578999999 68899999999  9999999999999999999999999999999999999999999999999999963

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.37  E-value=1.6e-12  Score=115.82  Aligned_cols=74  Identities=27%  Similarity=0.322  Sum_probs=70.4

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ++++||++|++  + +|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~--v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEEC--CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             cEEECCCCCCC--C-EEEEEe--cCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            47899999996  7 999999  99999999999999999999999999999999999999999999999999999754

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.30  E-value=1.1e-12  Score=117.35  Aligned_cols=76  Identities=29%  Similarity=0.450  Sum_probs=72.4

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      .++++||++| ++..|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEEC--CCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             cEEEEcCCCC-CCCcEEEEEEE--cCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence            3578999999 68999999999  9999999999999999999999999999999999999999999999999999964

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.29  E-value=3.5e-13  Score=121.97  Aligned_cols=71  Identities=28%  Similarity=0.440  Sum_probs=67.1

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ++|++|.+      |+|.+|+  +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus         3 ~~i~~p~~------G~v~~~~--v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             SCCCCCSC------CCCCSCC--CSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             cEEECCCe------EEEEEEE--cCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            46888988      8899999  99999999999999999999999999999999999999999999999999999854

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.17  E-value=3.9e-12  Score=115.07  Aligned_cols=72  Identities=29%  Similarity=0.448  Sum_probs=67.4

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ++|++|.+      |+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~--v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCC--CSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEE--cCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            35778887      7899999  999999999999999999999999999999999999999999999999999998654

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.15  E-value=1e-11  Score=114.55  Aligned_cols=84  Identities=21%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             ccccccceeEEEEccCCCCCC----ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee
Q psy6394         179 HTSCIRHKLIQFKLADIGEGI----REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA  254 (1045)
Q Consensus       179 ~~s~~~~~~~~~~~P~lg~~~----~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v  254 (1045)
                      |++-......+|.+|+..+..    ..|+|.+|+  +++||.|++||+|++||++|+..+|.||++|+|.++.+++|+.|
T Consensus         7 ~~~~~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V   84 (94)
T 2jku_A            7 HSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVS--VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTV   84 (94)
T ss_dssp             -----------------CCCCCCCSSSCEEEEEC--CCTTCCCCTTCCCEEEEC--------------------------
T ss_pred             ccccccccCEEEEcCCCCceEEECCCCEEEEEEE--CCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEE
Confidence            556666677789999998764    489999999  99999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEE
Q psy6394         255 LVGKPLLDIE  264 (1045)
Q Consensus       255 ~vG~~l~~i~  264 (1045)
                      ..|++|+.|+
T Consensus        85 ~~G~~L~~ie   94 (94)
T 2jku_A           85 GEGDLLVELE   94 (94)
T ss_dssp             ----------
T ss_pred             CCCCEEEEEC
Confidence            9999998874

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.12  E-value=1.5e-10  Score=100.90  Aligned_cols=63  Identities=29%  Similarity=0.343  Sum_probs=60.9

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ..|+|.+|+  +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus         6 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~   68 (72)
T 1z6h_A            6 MAGNLWKVH--VKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELS   68 (72)
T ss_dssp             SSEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEG
T ss_pred             ccEEEEEEE--cCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEe
Confidence            369999999  999999999999999999999999999999999999999999999999999985

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.12  E-value=7.3e-11  Score=106.48  Aligned_cols=63  Identities=19%  Similarity=0.306  Sum_probs=60.5

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .+|+|.+|+  +++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|..
T Consensus        12 ~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~   74 (84)
T 2kcc_A           12 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL   74 (84)
T ss_dssp             SSCCEEEES--SCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred             CCEEEEEEE--CCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence            468999999  9999999999999999999999999999999999999 99999999999999973

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=3.5e-10  Score=105.42  Aligned_cols=63  Identities=19%  Similarity=0.291  Sum_probs=60.4

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      ..|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.|..|++|+.|..
T Consensus        24 ~~G~v~~~~--v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           24 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             SCEEEEEES--SCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             CCEEEEEEE--cCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            469999999  9999999999999999999999999999999999 99999999999999999963

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.04  E-value=1.2e-10  Score=90.57  Aligned_cols=39  Identities=36%  Similarity=0.652  Sum_probs=37.2

Q ss_pred             ccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394         347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN  385 (1045)
Q Consensus       347 ~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~  385 (1045)
                      +++|+||+||+|+|||++.|+|||++|||+|+||++|+.
T Consensus         2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   40 (41)
T 2eq9_C            2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE   40 (41)
T ss_dssp             CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred             CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            579999999999999999999999999999999999975

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.02  E-value=1e-10  Score=97.34  Aligned_cols=44  Identities=45%  Similarity=0.763  Sum_probs=39.2

Q ss_pred             ccccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394         343 KWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS  386 (1045)
Q Consensus       343 ~~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~  386 (1045)
                      +.++.++|+||+||+|+|||++.|+|||++|||+|+||++|++.
T Consensus         5 ~~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~   48 (58)
T 3rnm_E            5 GRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   48 (58)
T ss_dssp             ---CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred             CCCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence            34678999999999999999999999999999999999999853

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.02  E-value=3.4e-10  Score=102.11  Aligned_cols=65  Identities=20%  Similarity=0.334  Sum_probs=61.4

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ..|+|.+|+  +++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|....
T Consensus        12 ~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           12 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             SSCCEEEES--SCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CCEEEEEEE--CCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            468899999  9999999999999999999999999999999999999 9999999999999997543

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.01  E-value=8.5e-10  Score=96.01  Aligned_cols=64  Identities=28%  Similarity=0.326  Sum_probs=61.3

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      ..|+|.+|+  +++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|..
T Consensus         6 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            6 MAGNLWKVH--VKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             SSEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             ccEEEEEEE--cCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            368999999  9999999999999999999999999999999999999999999999999999864

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.00  E-value=1e-09  Score=95.82  Aligned_cols=63  Identities=22%  Similarity=0.299  Sum_probs=60.3

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ..|+|.+|+  +++||.|++||+|++++++|...+|.||.+|+|.++.+++|+.+..|++|+.|+
T Consensus        12 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           12 MPGKVLRVL--VRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             SCEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEE--cCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            469999999  999999999999999999999999999999999999999999999999999873

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.00  E-value=1.9e-10  Score=88.90  Aligned_cols=38  Identities=39%  Similarity=0.696  Sum_probs=36.3

Q ss_pred             cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394         348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN  385 (1045)
Q Consensus       348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~  385 (1045)
                      ++|+||++|+|+|||++.|+|||++|||+|+||++|++
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   39 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAG   39 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHHC
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHhc
Confidence            68999999999999999999999999999999999874

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.00  E-value=1e-10  Score=107.79  Aligned_cols=79  Identities=20%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             cceeEEEEecCCCCCc----ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCc
Q psy6394         444 RHKLIQFNLADIGEGI----REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKP  519 (1045)
Q Consensus       444 ~~~~~~i~~P~lge~~----~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~  519 (1045)
                      .....++.+|..++..    ..|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++
T Consensus        12 ~~~~~~v~~~~~~~~~v~a~~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~   89 (94)
T 2jku_A           12 DLGTENLYFQSMTSSVLRSPMPGVVVAVS--VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDL   89 (94)
T ss_dssp             ------------CCCCCCCSSSCEEEEEC--CCTTCCCCTTCCCEEEEC-------------------------------
T ss_pred             cccCEEEEcCCCCceEEECCCCEEEEEEE--CCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCE
Confidence            4456778899887764    489999999  9999999999999999999999999999999999999999999999999


Q ss_pred             eEEEe
Q psy6394         520 LLDIE  524 (1045)
Q Consensus       520 l~~i~  524 (1045)
                      |+.|+
T Consensus        90 L~~ie   94 (94)
T 2jku_A           90 LVELE   94 (94)
T ss_dssp             -----
T ss_pred             EEEEC
Confidence            98873

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=98.99  E-value=1.8e-10  Score=89.01  Aligned_cols=38  Identities=34%  Similarity=0.698  Sum_probs=35.1

Q ss_pred             cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394         348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN  385 (1045)
Q Consensus       348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~  385 (1045)
                      ++|+||+||+++|||++.|+|||++|||+|+||++|+.
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   39 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE   39 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC--
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            68999999999999999999999999999999999864

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=98.98  E-value=7.9e-10  Score=98.47  Aligned_cols=57  Identities=28%  Similarity=0.383  Sum_probs=54.8

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      +|+  +++||.|++||+|++||++|+.++|.||++|+|.++++++|+.|..|++|+.|+
T Consensus        24 ~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           24 KAF--IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             CCS--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             ccc--cCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            469  999999999999999999999999999999999999999999999999999873

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.97  E-value=1.2e-09  Score=101.62  Aligned_cols=65  Identities=32%  Similarity=0.384  Sum_probs=62.0

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ..|+|.+|+  +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus        21 ~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~   85 (99)
T 2ejm_A           21 MTGTIEKVF--VKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE   85 (99)
T ss_dssp             SSEEEEEEC--CCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCC
T ss_pred             CCEEEEEEE--CCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECC
Confidence            369999999  99999999999999999999999999999999999999999999999999999743

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.97  E-value=1.2e-09  Score=96.40  Aligned_cols=63  Identities=25%  Similarity=0.273  Sum_probs=60.3

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ..|.|.+|+  +++||.|++||+|++++++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus        15 ~~G~v~~~~--v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEEC--CCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCEEEEEEE--cCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            468999999  999999999999999999999999999999999999999999999999999873

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=98.95  E-value=3.6e-10  Score=91.30  Aligned_cols=42  Identities=43%  Similarity=0.787  Sum_probs=39.3

Q ss_pred             ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394         345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS  386 (1045)
Q Consensus       345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~  386 (1045)
                      ++.++|+||+||+|+|||++.|+|||++|||+|+||++|+..
T Consensus         6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~~   47 (49)
T 1w85_I            6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG   47 (49)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHCC
T ss_pred             cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHhc
Confidence            467899999999999999999999999999999999999863

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=2.1e-09  Score=100.15  Aligned_cols=64  Identities=19%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ..|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.+..|++|+.|...
T Consensus        24 ~~G~v~~~~--v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~   87 (100)
T 2dn8_A           24 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD   87 (100)
T ss_dssp             SCEEEEEES--SCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred             CCEEEEEEE--cCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence            468999999  9999999999999999999999999999999999 999999999999999999643

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=98.93  E-value=3.2e-10  Score=92.28  Aligned_cols=42  Identities=26%  Similarity=0.572  Sum_probs=39.3

Q ss_pred             ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394         345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS  386 (1045)
Q Consensus       345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~  386 (1045)
                      ++.++|+||+||+|+|||++.|+|||++|||+|+||++|+++
T Consensus         9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~~   50 (51)
T 1bal_A            9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK   50 (51)
T ss_dssp             SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSCC
T ss_pred             CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhcc
Confidence            457899999999999999999999999999999999999875

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=98.88  E-value=5.2e-09  Score=91.33  Aligned_cols=63  Identities=22%  Similarity=0.299  Sum_probs=60.2

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      ..|.|.+|+  +++||.|++||+|++++++|...+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus        12 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           12 MPGKVLRVL--VRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             SCEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEE--cCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            468999999  999999999999999999999999999999999999999999999999999873

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=98.87  E-value=2.9e-09  Score=94.82  Aligned_cols=57  Identities=28%  Similarity=0.383  Sum_probs=54.9

Q ss_pred             EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      +|+  +++||.|++||.|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus        24 ~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           24 KAF--IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             CCS--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             ccc--cCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            479  999999999999999999999999999999999999999999999999999874

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.85  E-value=5.4e-09  Score=92.15  Aligned_cols=63  Identities=25%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      ..|.|.+|+  +++||.|++||+|++++++|...+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus        15 ~~G~v~~~~--v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEEC--CCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCEEEEEEE--cCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            468899999  999999999999999999999999999999999999999999999999999874

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.84  E-value=3.6e-09  Score=130.13  Aligned_cols=62  Identities=23%  Similarity=0.344  Sum_probs=60.2

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|++|+  |++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus       620 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVD--VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEEC--CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             cEEEEEEE--eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            49999999  999999999999999999999999999999999999999999999999999884

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=98.83  E-value=1.6e-09  Score=93.83  Aligned_cols=43  Identities=49%  Similarity=0.823  Sum_probs=39.9

Q ss_pred             cccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394         344 WKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS  386 (1045)
Q Consensus       344 ~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~  386 (1045)
                      .+++++|+||+||+|+||||+.|+|||++|||+|+||++|+..
T Consensus        14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            3567899999999999999999999999999999999999863

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=98.82  E-value=1.3e-09  Score=92.61  Aligned_cols=42  Identities=21%  Similarity=0.435  Sum_probs=39.4

Q ss_pred             cccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394         344 WKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN  385 (1045)
Q Consensus       344 ~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~  385 (1045)
                      .++.++|+||+||+++|||++.|+|||++|||+|+||++|+.
T Consensus         8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~   49 (64)
T 2f60_K            8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQ   49 (64)
T ss_dssp             HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHh
Confidence            356789999999999999999999999999999999999986

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.81  E-value=9.4e-09  Score=95.52  Aligned_cols=66  Identities=32%  Similarity=0.392  Sum_probs=62.5

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ..|+|.+|+  +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|....
T Consensus        21 ~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           21 MTGTIEKVF--VKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE   86 (99)
T ss_dssp             SSEEEEEEC--CCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred             CCEEEEEEE--CCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence            368999999  999999999999999999999999999999999999999999999999999997543

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.77  E-value=8e-09  Score=133.76  Aligned_cols=60  Identities=20%  Similarity=0.193  Sum_probs=59.2

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      |+|.+|+  |++||+|++||+||+||+||++++|+||.+|+|.+|++++|+.|.+|++|+.|
T Consensus      1176 G~v~~~~--v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1176 GRFWKPV--AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             EEEEEES--SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             EEEEEEE--cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            9999999  99999999999999999999999999999999999999999999999999987

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=98.77  E-value=3.6e-09  Score=89.52  Aligned_cols=41  Identities=34%  Similarity=0.626  Sum_probs=39.0

Q ss_pred             ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394         345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN  385 (1045)
Q Consensus       345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~  385 (1045)
                      +++++|++|+||+++||||+.|.|||++|||+|+||++|+.
T Consensus         4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~   44 (62)
T 1w4i_A            4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAE   44 (62)
T ss_dssp             SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHH
T ss_pred             cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHh
Confidence            46789999999999999999999999999999999999986

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.75  E-value=1e-08  Score=132.42  Aligned_cols=63  Identities=24%  Similarity=0.376  Sum_probs=60.8

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .|+|++|+  |++||.|++||+||+||+||++++|+||.+|+|.+|++++|+.|.+|++|+.|+.
T Consensus      1085 ~G~v~~~~--v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1085 PGSVTEVK--VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             SEEEEEEC--CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             eEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            49999999  9999999999999999999999999999999999999999999999999999974

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.69  E-value=2e-08  Score=123.52  Aligned_cols=62  Identities=23%  Similarity=0.344  Sum_probs=60.2

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      -|+|++|+  |++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus       620 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVD--VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEEC--CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             cEEEEEEE--eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            48999999  999999999999999999999999999999999999999999999999999884

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=98.65  E-value=3.5e-09  Score=82.22  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=36.8

Q ss_pred             CCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         555 SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       555 ~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      +++|++|++|+++|||++.|+|||++|||+++||++|++
T Consensus         2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   40 (41)
T 2eq9_C            2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE   40 (41)
T ss_dssp             CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred             CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            579999999999999999999999999999999999864

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.63  E-value=3.7e-08  Score=127.63  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      -|+|.+|+  |++||.|++||+|++||+||++++|+||.+|+|.+|++++||.|.+|++|+.|
T Consensus      1175 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPV--AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEES--SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             cEEEEEEE--cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            38999999  99999999999999999999999999999999999999999999999999987

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=98.62  E-value=3.7e-09  Score=81.61  Aligned_cols=37  Identities=30%  Similarity=0.534  Sum_probs=34.8

Q ss_pred             CCccccccCCCCCCCcCccccCCCCCccchHhHHhhh
Q psy6394         556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYM  592 (1045)
Q Consensus       556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~  592 (1045)
                      ++|++|++|+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL   38 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence            6899999999999999999999999999999999875

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=98.60  E-value=4.3e-09  Score=81.25  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=35.7

Q ss_pred             CCccccccCCCCCCCcCccccCCCCCccchHhHHhhh
Q psy6394         556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYM  592 (1045)
Q Consensus       556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~  592 (1045)
                      ++|++|++|+++|||++.|+|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence            6899999999999999999999999999999999886

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=98.59  E-value=4.9e-09  Score=87.22  Aligned_cols=42  Identities=38%  Similarity=0.595  Sum_probs=38.2

Q ss_pred             CCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         552 PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       552 ~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      ..+.++|++|++|+++|||++.|+|||++|||+++||++|++
T Consensus         6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~   47 (58)
T 3rnm_E            6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLE   47 (58)
T ss_dssp             --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHh
Confidence            457889999999999999999999999999999999999864

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=98.59  E-value=1.3e-08  Score=82.77  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=38.4

Q ss_pred             CCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         552 PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       552 ~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      ....++|++|++|+++|||++.|.|||++|||+++||++|+.
T Consensus         8 ~~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~   49 (51)
T 1bal_A            8 NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   49 (51)
T ss_dssp             SSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSC
T ss_pred             CCCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhc
Confidence            345789999999999999999999999999999999998754

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.58  E-value=5.9e-08  Score=125.31  Aligned_cols=64  Identities=23%  Similarity=0.370  Sum_probs=60.8

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .|+|++|+  |++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus      1085 ~G~v~~~~--v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1085 PGSVTEVK--VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             SEEEEEEC--CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             eEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            58999999  99999999999999999999999999999999999999999999999999999743

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.57  E-value=7.3e-08  Score=94.27  Aligned_cols=72  Identities=21%  Similarity=0.310  Sum_probs=60.9

Q ss_pred             EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEE---eeCCCCeec---CCC-eEE
Q psy6394         189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV---YYGEGDVAL---VGK-PLL  261 (1045)
Q Consensus       189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i---~~~~g~~v~---vG~-~l~  261 (1045)
                      .+..|.+|+      |+.+. .+++||.|++||+||+||+||+..+|.||.+|+|.++   +++.|+.|+   .|+ +|+
T Consensus        38 ~~a~~~lG~------i~~V~-lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~  110 (136)
T 1zko_A           38 NHAQEQLGD------VVYVD-LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLF  110 (136)
T ss_dssp             HHHHHHHCS------EEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred             hhhcccCCC------cEEEE-ecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEE
Confidence            456677765      23333 0489999999999999999999999999999999999   899999998   998 999


Q ss_pred             EEEecC
Q psy6394         262 DIEVED  267 (1045)
Q Consensus       262 ~i~~~~  267 (1045)
                      .|...+
T Consensus       111 ~i~~~~  116 (136)
T 1zko_A          111 KMEISD  116 (136)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            998544

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=98.50  E-value=1.5e-08  Score=81.83  Aligned_cols=41  Identities=34%  Similarity=0.536  Sum_probs=38.3

Q ss_pred             CCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         553 DTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       553 ~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      ...++|++|++|+++|||++.|.|||++|||+++||++|+.
T Consensus         6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~   46 (49)
T 1w85_I            6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   46 (49)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence            35679999999999999999999999999999999999875

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.46  E-value=2.2e-07  Score=88.55  Aligned_cols=65  Identities=18%  Similarity=0.226  Sum_probs=60.0

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCcee-----------------------------EEeCCCCeEEEEEeeCC
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASV-----------------------------TITSRYKGTVRKVYYGE  250 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~-----------------------------~i~s~~~G~v~~i~~~~  250 (1045)
                      ..|.|.+|+  |++||.|++||+|+++++.++..                             .|.||++|+|.++.+.+
T Consensus         8 ~~G~V~~v~--v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~   85 (116)
T 2k32_A            8 VSGVIVNKL--FKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNI   85 (116)
T ss_dssp             SCEEEEEEC--SCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCT
T ss_pred             CCEEEEEEE--CCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCC
Confidence            469999999  99999999999999999986664                             99999999999999999


Q ss_pred             CCeecCC-CeEEEEEec
Q psy6394         251 GDVALVG-KPLLDIEVE  266 (1045)
Q Consensus       251 g~~v~vG-~~l~~i~~~  266 (1045)
                      |+.|..| ++|+.|...
T Consensus        86 G~~v~~g~~~l~~i~~~  102 (116)
T 2k32_A           86 GDYVSASTTELVRVTNL  102 (116)
T ss_dssp             TCEECTTTSCCEEEECS
T ss_pred             CCEEcCCCcEEEEEECC
Confidence            9999999 999999743

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.44  E-value=5.7e-08  Score=119.00  Aligned_cols=66  Identities=26%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      +...| .|+|++|+  |++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       652 v~ap~-~G~V~~v~--V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i  717 (718)
T 3bg3_A          652 IGAPM-PGKVIDIK--VVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI  717 (718)
T ss_dssp             EECSS-CEEEEEEC--SCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred             EeCCC-CeEEEEEE--eCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence            34444 59999999  99999999999999999999999999999999999999999999999999876

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=98.40  E-value=3.3e-08  Score=85.58  Aligned_cols=43  Identities=37%  Similarity=0.588  Sum_probs=39.6

Q ss_pred             CCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCC
Q psy6394         552 PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNS  594 (1045)
Q Consensus       552 ~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~  594 (1045)
                      ..+.++|++|++|+++|||+..|.|||++|||+++||++|+..
T Consensus        14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            3567899999999999999999999999999999999998764

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.35  E-value=2.3e-07  Score=120.16  Aligned_cols=62  Identities=24%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .|+|.+|+  |++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1103 ~G~v~~~~--v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVF--VSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEEC--CSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CeEEEEEE--cCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            49999999  999999999999999999999999999999999999999999999999999875

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=98.30  E-value=3.2e-08  Score=83.69  Aligned_cols=41  Identities=24%  Similarity=0.388  Sum_probs=38.4

Q ss_pred             CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCC
Q psy6394         554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNS  594 (1045)
Q Consensus       554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~  594 (1045)
                      .+++|++|++|+++|||++.|.|||++|||+++||++|+..
T Consensus         5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~   45 (62)
T 1w4i_A            5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE   45 (62)
T ss_dssp             SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            56799999999999999999999999999999999999863

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.29  E-value=8.2e-07  Score=84.54  Aligned_cols=65  Identities=18%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccceee-----------------------------EEecCCCEEEEEEeeCC
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASV-----------------------------TITSRYKGTVRKVYYGE  510 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~-----------------------------ei~ap~~G~v~~i~~~~  510 (1045)
                      ..|.|.+|+  +++||.|++||+|+++++.++..                             .|.||++|+|.++.+++
T Consensus         8 ~~G~V~~v~--v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~   85 (116)
T 2k32_A            8 VSGVIVNKL--FKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNI   85 (116)
T ss_dssp             SCEEEEEEC--SCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCT
T ss_pred             CCEEEEEEE--CCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCC
Confidence            469999999  99999999999999999986654                             89999999999999999


Q ss_pred             CCEEecC-CceEEEeec
Q psy6394         511 GDVALVG-KPLLDIEVE  526 (1045)
Q Consensus       511 G~~v~vg-~~l~~i~~~  526 (1045)
                      |+.|..| ++|+.|...
T Consensus        86 G~~v~~g~~~l~~i~~~  102 (116)
T 2k32_A           86 GDYVSASTTELVRVTNL  102 (116)
T ss_dssp             TCEECTTTSCCEEEECS
T ss_pred             CCEEcCCCcEEEEEECC
Confidence            9999999 999999754

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.29  E-value=8.3e-07  Score=86.83  Aligned_cols=71  Identities=21%  Similarity=0.346  Sum_probs=60.3

Q ss_pred             EEEecCCCCCcceeEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEE---eeCCCCEEe---cCC-ce
Q psy6394         449 QFNLADIGEGIREVNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKV---YYGEGDVAL---VGK-PL  520 (1045)
Q Consensus       449 ~i~~P~lge~~~eg~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i---~~~~G~~v~---vg~-~l  520 (1045)
                      .+..|.+|+      |+...  + ++||.|++||+||+||++|+..+|.||.+|+|.++   ++++|+.|.   .|+ .|
T Consensus        38 ~~a~~~lG~------i~~V~--lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL  109 (136)
T 1zko_A           38 NHAQEQLGD------VVYVD--LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWL  109 (136)
T ss_dssp             HHHHHHHCS------EEEEE--CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCC
T ss_pred             hhhcccCCC------cEEEE--ecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEE
Confidence            344677764      44444  4 99999999999999999999999999999999999   788999998   887 99


Q ss_pred             EEEeecC
Q psy6394         521 LDIEVED  527 (1045)
Q Consensus       521 ~~i~~~~  527 (1045)
                      +.|....
T Consensus       110 ~~i~~~~  116 (136)
T 1zko_A          110 FKMEISD  116 (136)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9998653

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=98.26  E-value=9.4e-08  Score=81.25  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=37.4

Q ss_pred             CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      +.++|++|++|+++|||++.|+|||++|||+++||++|++
T Consensus        10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~   49 (64)
T 2f60_K           10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQ   49 (64)
T ss_dssp             HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHh
Confidence            3579999999999999999999999999999999999874

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.23  E-value=3e-07  Score=112.66  Aligned_cols=61  Identities=25%  Similarity=0.313  Sum_probs=59.4

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      .|+|++|+  |++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       657 ~G~V~~v~--V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIK--VVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI  717 (718)
T ss_dssp             CEEEEEEC--SCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred             CeEEEEEE--eCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence            69999999  99999999999999999999999999999999999999999999999999876

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.17  E-value=2.4e-06  Score=82.85  Aligned_cols=73  Identities=19%  Similarity=0.145  Sum_probs=58.4

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC---eec---CCC-eE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD---VAL---VGK-PL  260 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~---~v~---vG~-~l  260 (1045)
                      ..+..|.+|+ +.     .+. ..++||+|++||+||+||++|+..+|.||.+|+|.++....++   .++   .|+ .|
T Consensus        29 td~a~~~lG~-i~-----~v~-lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl  101 (128)
T 3a7l_A           29 TEHAQELLGD-MV-----FVD-LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI  101 (128)
T ss_dssp             CHHHHHHHCS-EE-----EEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCC
T ss_pred             ehHHhccCCc-eE-----EEE-ecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccE
Confidence            4566777776 33     333 1489999999999999999999999999999999999875554   465   777 99


Q ss_pred             EEEEecC
Q psy6394         261 LDIEVED  267 (1045)
Q Consensus       261 ~~i~~~~  267 (1045)
                      +.|...+
T Consensus       102 ~~i~~~~  108 (128)
T 3a7l_A          102 FKIKASD  108 (128)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9998654

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.15  E-value=1e-06  Score=114.15  Aligned_cols=62  Identities=24%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      .|+|.+|+  |++||.|++||+|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1103 ~G~v~~~~--v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVF--VSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEEC--CSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CeEEEEEE--cCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            58999999  999999999999999999999999999999999999999999999999999874

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.14  E-value=1.5e-06  Score=84.48  Aligned_cols=73  Identities=19%  Similarity=0.152  Sum_probs=58.0

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC---eec---CCC-eE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD---VAL---VGK-PL  260 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~---~v~---vG~-~l  260 (1045)
                      ..+..|.+|+      |+.+. ..++||+|++||+||+||+||+..+|.||.+|+|.++..+.++   .|+   .|+ .|
T Consensus        28 td~a~~~lG~------i~~v~-lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl  100 (131)
T 1hpc_A           28 TDHAQDHLGE------VVFVE-LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWM  100 (131)
T ss_dssp             CHHHHHHHCS------EEEEE-CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCC
T ss_pred             ehhhcccCCC------ceEEE-ecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceE
Confidence            3456676665      44444 1489999999999999999999999999999999999866654   454   666 99


Q ss_pred             EEEEecC
Q psy6394         261 LDIEVED  267 (1045)
Q Consensus       261 ~~i~~~~  267 (1045)
                      +.|...+
T Consensus       101 ~~i~~~~  107 (131)
T 1hpc_A          101 IKIKPTS  107 (131)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9998644

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.14  E-value=2.7e-06  Score=82.44  Aligned_cols=73  Identities=16%  Similarity=0.230  Sum_probs=57.8

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeC---CCCee---cCCC-eE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG---EGDVA---LVGK-PL  260 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~---~g~~v---~vG~-~l  260 (1045)
                      ..+..|.+|+ +.     ... ..++||+|++||+||+||++|+..+|.||.+|+|.++...   ..+.+   +.|+ +|
T Consensus        28 t~~a~~~lG~-i~-----~v~-lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl  100 (128)
T 1onl_A           28 TDYAQDALGD-VV-----YVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWI  100 (128)
T ss_dssp             CHHHHHHHCS-EE-----EEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCC
T ss_pred             ehHHhhcCCC-ce-----EEE-ecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccE
Confidence            4456677765 33     333 1489999999999999999999999999999999999765   44445   6787 99


Q ss_pred             EEEEecC
Q psy6394         261 LDIEVED  267 (1045)
Q Consensus       261 ~~i~~~~  267 (1045)
                      +.|...+
T Consensus       101 ~~i~~~~  107 (128)
T 1onl_A          101 FRLKPRD  107 (128)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9998654

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=97.73  E-value=1.5e-05  Score=77.52  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=55.2

Q ss_pred             EEEecCCCCCcceeEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC---CEEe---cCC-ce
Q psy6394         449 QFNLADIGEGIREVNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG---DVAL---VGK-PL  520 (1045)
Q Consensus       449 ~i~~P~lge~~~eg~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G---~~v~---vg~-~l  520 (1045)
                      ++.+|.+|+      |+...  + ++||.|++||+|++||++|+..+|.||.+|+|.+++.+.+   +.+.   -|+ -|
T Consensus        29 d~a~~~lG~------i~~v~--lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl  100 (131)
T 1hpc_A           29 DHAQDHLGE------VVFVE--LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWM  100 (131)
T ss_dssp             HHHHHHHCS------EEEEE--CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCC
T ss_pred             hhhcccCCC------ceEEE--ecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceE
Confidence            344566664      55655  5 9999999999999999999999999999999999985444   3453   344 78


Q ss_pred             EEEeecC
Q psy6394         521 LDIEVED  527 (1045)
Q Consensus       521 ~~i~~~~  527 (1045)
                      +.|....
T Consensus       101 ~~i~~~~  107 (131)
T 1hpc_A          101 IKIKPTS  107 (131)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            8887543

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=97.73  E-value=3.4e-05  Score=74.79  Aligned_cols=72  Identities=17%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             EEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeC---CCCEE---ecCC-ceE
Q psy6394         449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG---EGDVA---LVGK-PLL  521 (1045)
Q Consensus       449 ~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~---~G~~v---~vg~-~l~  521 (1045)
                      .+..|.+|+      |+... -.++||.|++||.+|+||++|+..+|.||.+|+|.+++.+   ..+.+   +-|+ -|+
T Consensus        29 ~~a~~~lG~------i~~v~-lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~  101 (128)
T 1onl_A           29 DYAQDALGD------VVYVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF  101 (128)
T ss_dssp             HHHHHHHCS------EEEEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred             hHHhhcCCC------ceEEE-ecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence            344566664      44444 0399999999999999999999999999999999999754   44555   5565 788


Q ss_pred             EEeecC
Q psy6394         522 DIEVED  527 (1045)
Q Consensus       522 ~i~~~~  527 (1045)
                      .|....
T Consensus       102 ~i~~~~  107 (128)
T 1onl_A          102 RLKPRD  107 (128)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            887543

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=97.70  E-value=3.3e-05  Score=74.87  Aligned_cols=73  Identities=18%  Similarity=0.132  Sum_probs=55.6

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC---CEEe---cCC-ce
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG---DVAL---VGK-PL  520 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G---~~v~---vg~-~l  520 (1045)
                      .++..|.+|+      |+.... .++|+.|++||.+|+||++|+..+|.||.+|+|.+++.+.+   +.+.   -|+ -|
T Consensus        29 td~a~~~lG~------i~~v~l-p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl  101 (128)
T 3a7l_A           29 TEHAQELLGD------MVFVDL-PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI  101 (128)
T ss_dssp             CHHHHHHHCS------EEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCC
T ss_pred             ehHHhccCCc------eEEEEe-cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccE
Confidence            3444677765      445440 39999999999999999999999999999999999986444   4454   454 78


Q ss_pred             EEEeecC
Q psy6394         521 LDIEVED  527 (1045)
Q Consensus       521 ~~i~~~~  527 (1045)
                      +.|....
T Consensus       102 ~~i~~~~  108 (128)
T 3a7l_A          102 FKIKASD  108 (128)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            8887543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.30  E-value=0.00035  Score=80.95  Aligned_cols=64  Identities=11%  Similarity=0.069  Sum_probs=57.7

Q ss_pred             ceEEEEEEeccC-CCCCeecCCCeEEEEEc------------------------------------------------CC
Q psy6394         200 REVNIKEWNGNV-TEGARINEFDVVCEVES------------------------------------------------DK  230 (1045)
Q Consensus       200 ~eg~i~~w~~~v-~~Gd~V~~gd~l~~vet------------------------------------------------dK  230 (1045)
                      ..|.|.+++  | ++||.|++||+|++|++                                                ..
T Consensus       128 ~~G~V~~v~--V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~  205 (413)
T 3ne5_B          128 AAGFIDKVY--PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQ  205 (413)
T ss_dssp             SCEEEEEEC--SCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCC
T ss_pred             cCEEEEEEE--eCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            469999999  9 99999999999999995                                                22


Q ss_pred             ceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         231 ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       231 a~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      ....|.||++|+|.++.+.+|+.|..|++|+.|..
T Consensus       206 ~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~  240 (413)
T 3ne5_B          206 TRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG  240 (413)
T ss_dssp             CEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred             ccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence            35689999999999999999999999999999973

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.21  E-value=0.00016  Score=78.82  Aligned_cols=64  Identities=22%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  230 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  230 (1045)
                      ..|.|.+|+  |++||.|++||+|+++++..                                                 
T Consensus        29 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~  106 (277)
T 2f1m_A           29 VSGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALAD  106 (277)
T ss_dssp             SCEEEEEEC--SCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHH
T ss_pred             ccEEEEEEE--cCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence            359999999  99999999999999998741                                                 


Q ss_pred             ----------------------ceeEEeCCCCeEEEEEeeCCCCeecCC--CeEEEEEe
Q psy6394         231 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEV  265 (1045)
Q Consensus       231 ----------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG--~~l~~i~~  265 (1045)
                                            ....|.||++|+|..+.+.+|+.|..|  ++|+.|..
T Consensus       107 ~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~  165 (277)
T 2f1m_A          107 AQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ  165 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEec
Confidence                                  124899999999999999999999999  68999964

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.19  E-value=0.00043  Score=66.54  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCCC-eEEEEEec
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVGK-PLLDIEVE  266 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG~-~l~~i~~~  266 (1045)
                      |.|+-+. .-++|++|++||+++.||++|+..+|.||.+|+|.++.....+.   +   +.|+ .|+.|...
T Consensus        32 Gdiv~ve-lp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~  102 (125)
T 3klr_A           32 GDVVYCS-LPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFS  102 (125)
T ss_dssp             CSEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEES
T ss_pred             CCeEEEE-eCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEEC
Confidence            4555554 14789999999999999999999999999999999997766544   3   2554 78888754

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.15  E-value=0.00059  Score=77.15  Aligned_cols=64  Identities=17%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCCc------------------------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDKA------------------------------------------------  231 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa------------------------------------------------  231 (1045)
                      ..|.|.+++  |++||.|++||+|+++++...                                                
T Consensus        64 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a  141 (359)
T 3lnn_A           64 LAGRIVSLN--KQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA  141 (359)
T ss_dssp             SCEEEEECC--SCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEEEE--cCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            369999999  999999999999999987531                                                


Q ss_pred             ----------------------------eeEEeCCCCeEEEEEeeCCCCeecC-CCeEEEEEe
Q psy6394         232 ----------------------------SVTITSRYKGTVRKVYYGEGDVALV-GKPLLDIEV  265 (1045)
Q Consensus       232 ----------------------------~~~i~s~~~G~v~~i~~~~g~~v~v-G~~l~~i~~  265 (1045)
                                                  ...|.||++|+|.++.+.+|+.|.. |++|+.|..
T Consensus       142 ~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~  204 (359)
T 3lnn_A          142 ASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD  204 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEec
Confidence                                        3579999999999999999999999 999999974

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.11  E-value=0.00052  Score=77.02  Aligned_cols=64  Identities=13%  Similarity=0.270  Sum_probs=56.2

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  230 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  230 (1045)
                      ..|.|.+|+  |++||.|++||+|+++++..                                                 
T Consensus        38 ~~G~V~~v~--v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~  115 (341)
T 3fpp_A           38 VSGQLKTLS--VAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD  115 (341)
T ss_dssp             SCEEEEEEC--CCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHH
T ss_pred             CCcEEEEEE--eCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH
Confidence            459999999  99999999999999998741                                                 


Q ss_pred             ------------------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCe---EEEEEe
Q psy6394         231 ------------------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP---LLDIEV  265 (1045)
Q Consensus       231 ------------------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~---l~~i~~  265 (1045)
                                                          ....|.||++|+|.++.+.+|+.|..|++   |+.|..
T Consensus       116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~  189 (341)
T 3fpp_A          116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD  189 (341)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence                                                11569999999999999999999999987   888863

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.01  E-value=0.00079  Score=65.92  Aligned_cols=65  Identities=18%  Similarity=0.177  Sum_probs=50.9

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee------cCC-CeEEEEEecC
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA------LVG-KPLLDIEVED  267 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v------~vG-~~l~~i~~~~  267 (1045)
                      |.|+-+. .-++|++|++||+++.||++|+..+|.||.+|+|.++.-...+.-      +.| ..|+.|+..+
T Consensus        54 GdIvfVe-lP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d  125 (143)
T 3mxu_A           54 GDLVFID-LPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQD  125 (143)
T ss_dssp             CSEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSC
T ss_pred             CCeEEEE-cCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECC
Confidence            4454443 147899999999999999999999999999999999987665542      345 4788887543

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.00  E-value=0.0011  Score=76.60  Aligned_cols=65  Identities=11%  Similarity=0.057  Sum_probs=58.1

Q ss_pred             ceeEEEEeeecc-CCCCeeccCCeEeEEec------------------------------------------------cc
Q psy6394         460 REVNIKEWNGNV-TEGARINEFDVVCEVES------------------------------------------------DK  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v-~~Gd~V~~gd~l~~vet------------------------------------------------dK  490 (1045)
                      ..|.|.+++  | ++||.|++||+|+++++                                                ..
T Consensus       128 ~~G~V~~v~--V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~  205 (413)
T 3ne5_B          128 AAGFIDKVY--PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQ  205 (413)
T ss_dssp             SCEEEEEEC--SCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCC
T ss_pred             cCEEEEEEE--eCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence            469999999  9 99999999999999995                                                22


Q ss_pred             eeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         491 ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       491 a~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ....|.||++|+|.++.+.+|+.|..|++|+.|...
T Consensus       206 ~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~  241 (413)
T 3ne5_B          206 TRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM  241 (413)
T ss_dssp             CEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred             ccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence            356899999999999999999999999999999743

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=96.97  E-value=0.00045  Score=75.25  Aligned_cols=65  Identities=22%  Similarity=0.236  Sum_probs=57.3

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  |++||.|++||+|+++++..                                                 
T Consensus        29 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~  106 (277)
T 2f1m_A           29 VSGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALAD  106 (277)
T ss_dssp             SCEEEEEEC--SCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHH
T ss_pred             ccEEEEEEE--cCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence            359999999  99999999999999998742                                                 


Q ss_pred             ----------------------eeeEEecCCCEEEEEEeeCCCCEEecC--CceEEEeec
Q psy6394         491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEVE  526 (1045)
Q Consensus       491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg--~~l~~i~~~  526 (1045)
                                            ....|.||++|+|..+.+.+|+.|..|  ++|+.|...
T Consensus       107 ~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~  166 (277)
T 2f1m_A          107 AQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  166 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence                                  134899999999999999999999999  689999654

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=96.90  E-value=0.00086  Score=65.36  Aligned_cols=64  Identities=17%  Similarity=0.101  Sum_probs=48.5

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEec
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEVE  266 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~~  266 (1045)
                      |.|+-+. .-++|++|++||.++.||++|+..+|.||.+|+|.++.-...+.   +   +.| ..|+.|+..
T Consensus        49 Gdiv~Ve-lP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~  119 (137)
T 3tzu_A           49 GDLVFVQ-LPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT  119 (137)
T ss_dssp             CSEEEEE-CCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE
T ss_pred             CCeEEEE-cCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh
Confidence            4454443 14799999999999999999999999999999999996543322   2   345 377777643

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=96.87  E-value=0.0015  Score=73.74  Aligned_cols=65  Identities=17%  Similarity=0.145  Sum_probs=58.1

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccce------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDKA------------------------------------------------  491 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa------------------------------------------------  491 (1045)
                      ..|.|.+++  +++||.|++||+|+++++...                                                
T Consensus        64 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a  141 (359)
T 3lnn_A           64 LAGRIVSLN--KQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA  141 (359)
T ss_dssp             SCEEEEECC--SCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEEEE--cCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            369999999  999999999999999997531                                                


Q ss_pred             ----------------------------eeEEecCCCEEEEEEeeCCCCEEec-CCceEEEeec
Q psy6394         492 ----------------------------SVTITSRYKGTVRKVYYGEGDVALV-GKPLLDIEVE  526 (1045)
Q Consensus       492 ----------------------------~~ei~ap~~G~v~~i~~~~G~~v~v-g~~l~~i~~~  526 (1045)
                                                  ...|.||++|+|.++.+.+|+.+.. |++|+.|...
T Consensus       142 ~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~  205 (359)
T 3lnn_A          142 ASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL  205 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence                                        3579999999999999999999999 9999999753

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=96.85  E-value=0.0013  Score=63.29  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             eEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCC
Q psy6394         462 VNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE  510 (1045)
Q Consensus       462 g~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~  510 (1045)
                      |.|+-.-  . ++|+.|++||.++.||++|+..+|.||.+|+|.+++-.-
T Consensus        32 Gdiv~ve--lp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l   79 (125)
T 3klr_A           32 GDVVYCS--LPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL   79 (125)
T ss_dssp             CSEEEEE--CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred             CCeEEEE--eCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhh
Confidence            4466554  3 799999999999999999999999999999999997543

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=96.80  E-value=0.0015  Score=73.21  Aligned_cols=64  Identities=13%  Similarity=0.270  Sum_probs=56.3

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  +++||.|++||+|+++++.-                                                 
T Consensus        38 ~~G~V~~v~--v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~  115 (341)
T 3fpp_A           38 VSGQLKTLS--VAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD  115 (341)
T ss_dssp             SCEEEEEEC--CCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHH
T ss_pred             CCcEEEEEE--eCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH
Confidence            358999999  99999999999999998752                                                 


Q ss_pred             ------------------------------------eeeEEecCCCEEEEEEeeCCCCEEecCCc---eEEEee
Q psy6394         491 ------------------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP---LLDIEV  525 (1045)
Q Consensus       491 ------------------------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~---l~~i~~  525 (1045)
                                                          ....|.||++|+|.++.+.+|+.|..|++   |+.|..
T Consensus       116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~  189 (341)
T 3fpp_A          116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD  189 (341)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence                                                11569999999999999999999999987   888864

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=96.75  E-value=0.00062  Score=77.58  Aligned_cols=64  Identities=13%  Similarity=0.192  Sum_probs=56.3

Q ss_pred             ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  230 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  230 (1045)
                      ..|.|.+++  |++||.|++||+|++|++..                                                 
T Consensus        50 v~G~V~~v~--v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~  127 (369)
T 1vf7_A           50 VNGIILKRL--FKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAA  127 (369)
T ss_dssp             SCEEEEECC--SCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEE--cCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHH
Confidence            359999999  99999999999999998632                                                 


Q ss_pred             --------ceeEEeCCCCeEEEEEeeCCCCeecCC--CeEEEEEe
Q psy6394         231 --------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEV  265 (1045)
Q Consensus       231 --------a~~~i~s~~~G~v~~i~~~~g~~v~vG--~~l~~i~~  265 (1045)
                              ....|.||++|+|.++.+.+|+.|..|  ++|+.|..
T Consensus       128 l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~  172 (369)
T 1vf7_A          128 VEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ  172 (369)
T ss_dssp             HHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred             HHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence                    125899999999999999999999995  89999963

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=96.67  E-value=0.002  Score=63.10  Aligned_cols=47  Identities=19%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeC
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG  509 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~  509 (1045)
                      |.|+-.-. -++|+.|++||.++.||+.|+..+|.||++|+|.+++-.
T Consensus        54 GdIvfVel-P~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~  100 (143)
T 3mxu_A           54 GDLVFIDL-PQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA  100 (143)
T ss_dssp             CSEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred             CCeEEEEc-CCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence            34555430 389999999999999999999999999999999999743

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=96.55  E-value=0.0028  Score=62.73  Aligned_cols=65  Identities=23%  Similarity=0.203  Sum_probs=48.8

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEecC
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEVED  267 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~~~  267 (1045)
                      |.|+-+. .-++|+.|++||.++.||+.|+..+|.||.+|+|.++.-..-+.   +   +.| ..|+.|+..+
T Consensus        59 GdIvfVe-LP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d  130 (155)
T 3hgb_A           59 GDVVFVQ-LPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS  130 (155)
T ss_dssp             CSEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred             CCeEEEE-cCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence            4444443 14789999999999999999999999999999999987533222   1   344 4888887543

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=96.53  E-value=0.0022  Score=62.47  Aligned_cols=45  Identities=18%  Similarity=0.136  Sum_probs=38.7

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      |.|+-.- --++|++|++||.++.||+.|+..+|.||++|+|.+++
T Consensus        49 Gdiv~Ve-lP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           49 GDLVFVQ-LPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             CSEEEEE-CCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CCeEEEE-cCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            3455543 03899999999999999999999999999999999996

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=96.41  E-value=0.0019  Score=73.45  Aligned_cols=65  Identities=12%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------  490 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------  490 (1045)
                      ..|.|.+++  +++||.|++||+|+++++..                                                 
T Consensus        50 v~G~V~~v~--v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~  127 (369)
T 1vf7_A           50 VNGIILKRL--FKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAA  127 (369)
T ss_dssp             SCEEEEECC--SCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEE--cCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHH
Confidence            358999999  99999999999999998742                                                 


Q ss_pred             --------eeeEEecCCCEEEEEEeeCCCCEEecC--CceEEEeec
Q psy6394         491 --------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEVE  526 (1045)
Q Consensus       491 --------a~~ei~ap~~G~v~~i~~~~G~~v~vg--~~l~~i~~~  526 (1045)
                              ....|.||++|+|.++.+++|+.|..|  ++|+.|...
T Consensus       128 l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          128 VEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred             HHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence                    135899999999999999999999995  899998643

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=96.02  E-value=0.0063  Score=60.25  Aligned_cols=45  Identities=20%  Similarity=0.151  Sum_probs=38.5

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      |.|+-.-. -++|+.|++||.++.||+.|+..+|.||++|+|.+++
T Consensus        59 GdIvfVeL-P~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           59 GDVVFVQL-PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             CSEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCeEEEEc-CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            34554430 3899999999999999999999999999999999986

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=95.74  E-value=0.00069  Score=76.86  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=27.8

Q ss_pred             EEeCCCCeEEEEEeeCCCCeecCCCe---EEEEE
Q psy6394         234 TITSRYKGTVRKVYYGEGDVALVGKP---LLDIE  264 (1045)
Q Consensus       234 ~i~s~~~G~v~~i~~~~g~~v~vG~~---l~~i~  264 (1045)
                      .|.||++|+|.++.+.+|+.|..|++   |+.|.
T Consensus       156 ~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          156 KITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA  189 (369)
T ss_dssp             SCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred             EEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence            59999999999999999999999998   66553

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=95.02  E-value=0.0021  Score=72.84  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             EEecCCCEEEEEEeeCCCCEEecCCc---eEEEe
Q psy6394         494 TITSRYKGTVRKVYYGEGDVALVGKP---LLDIE  524 (1045)
Q Consensus       494 ei~ap~~G~v~~i~~~~G~~v~vg~~---l~~i~  524 (1045)
                      .|.||++|+|.++.+++|+.|..|++   |+.|.
T Consensus       156 ~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          156 KITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA  189 (369)
T ss_dssp             SCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred             EEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence            49999999999999999999999998   65553

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=94.53  E-value=0.1  Score=59.03  Aligned_cols=61  Identities=13%  Similarity=0.037  Sum_probs=52.5

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      +.+.+..  ++.||.|++||+|++|+.    .+...+|.||.+|+|..+.  ....|..|+.|+.|...
T Consensus       275 ~G~~~~~--~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          275 TGLFEPT--HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVVMED  339 (354)
T ss_dssp             CEEEEES--CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEEEEE
T ss_pred             CEEEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEEeee
Confidence            3477777  899999999999999997    5888999999999998664  67789999999999743

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=94.29  E-value=0.12  Score=58.01  Aligned_cols=61  Identities=23%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .+-+.+.+  ++.||.|++||+|++|..    .....+|.||.+|+|.....  .-.|..|+.|+.|..
T Consensus       264 ~~Gl~~~~--v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~V~~G~~l~~Ia~  328 (331)
T 3na6_A          264 HDGLFEIM--IDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGMIKSGDCAAVIGV  328 (331)
T ss_dssp             SCEEEEES--SCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSEECTTCEEEEEEC
T ss_pred             CCeEEEEc--CCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCccCCCCEEEEEec
Confidence            34577888  999999999999999997    35678999999999977654  467889999999863

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=93.61  E-value=0.14  Score=58.08  Aligned_cols=61  Identities=10%  Similarity=0.105  Sum_probs=51.8

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc------CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES------DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet------dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      .+-|.+.+  ++.||.|++||+|++|-.      .....+|.||.+|+|.-....  -.|..|+.|+.|-.
T Consensus       297 ~~Gl~~~~--v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~--p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          297 KAGMVEYL--GKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS--ASVHQGTELYKVMT  363 (368)
T ss_dssp             SCEEEEEC--SCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS--SEECTTCEEEEEEE
T ss_pred             CCEEEEEe--CCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC--CccCCCCEEEEEee
Confidence            45677788  999999999999999998      567899999999999766554  67999999999863

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A

Probab=93.55  E-value=0.2  Score=51.26  Aligned_cols=98  Identities=15%  Similarity=0.295  Sum_probs=58.1

Q ss_pred             cHHHHHHhhcC------CCCc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC----CccHH
Q psy6394           3 NVLSVSRSLRS------ICKT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG----TLNEV   71 (1045)
Q Consensus         3 ~~~~~~~~~~s------~~~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g----~i~~~   71 (1045)
                      +++.++.|...      +... |+|||...            +.     +++|+..+||+...    +...    .+|.+
T Consensus        16 vllkI~~H~~r~~~~~~~~~V~G~LLG~~~------------~~-----~v~V~~~f~lp~~~----~~~~~~~~~~d~e   74 (187)
T 2o95_A           16 VLLSVVDHFNRIGKVGNQKRVVGVLLGSWQ------------KK-----VLDVSNSFAVPFDE----DDKDDSVWFLDHD   74 (187)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCEEEEEEEES------------SS-----EEEEEEEEEECEEE----CSSCTTSEEECHH
T ss_pred             HHHHHHHHHhhhcccCCCcEEEEEEEEEEc------------CC-----EEEEEEEEEeCCcc----cCCCcchhhcCHH
Confidence            35566666432      2344 99999872            11     37788999998321    1111    56666


Q ss_pred             HHHHHh---c--cCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394          72 LLDTIL---G--EFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV  130 (1045)
Q Consensus        72 ~l~~il---~--~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~  130 (1045)
                      -+.+.+   +  +...+|||||.=-    ...|..+..+|.++++..     +.++++++.+..
T Consensus        75 y~~~m~~~~~~v~~~~~iVGWY~s~----~~~s~~d~~i~~~~~~~~-----~~~v~Livd~~~  129 (187)
T 2o95_A           75 YLENMYGMFKKVNARERIVGWYHTG----PKLHKNDIAINELMKRYC-----PNSVLVIIDVKP  129 (187)
T ss_dssp             HHHHHHHHHHTTSSSCEEEEEEECC----SSCCTTHHHHHHHHTTTC-----TTCEEEEECCCT
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCC----CcCCcccHHHHHHHHhcC-----CCCEEEEECCCC
Confidence            555444   3  2235699999733    344677788997665432     345666666544

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=92.88  E-value=0.25  Score=55.84  Aligned_cols=59  Identities=14%  Similarity=0.051  Sum_probs=52.2

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      +.+..  ++.||.|++||+|++|+.    .+...+|.||.+|+|..+  .....|..|+.|+.|...
T Consensus       277 ~~~~~--~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          277 LFEPT--HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED  339 (354)
T ss_dssp             EEEES--CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred             EEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence            77777  899999999999999997    588899999999999876  478889999999998754

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=92.65  E-value=0.24  Score=55.48  Aligned_cols=59  Identities=24%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      +.+.+  ++.||.|++||+|++|..    .....+|.||.+|+|....  ..-.|..|+.|+.|...
T Consensus       267 l~~~~--v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          267 LFEIM--IDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             EEEES--SCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEEECB
T ss_pred             EEEEc--CCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEecc
Confidence            77778  999999999999999997    3567899999999997764  55778899999998643

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=92.09  E-value=0.16  Score=50.88  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             ceEEEEEEeccCCCCCeecC----CCeEEEEEcCCceeEEeCCCCeEEEEE-----------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV-----------------------------  246 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~~i~s~~~G~v~~i-----------------------------  246 (1045)
                      -.|+|+...   +..|.|-.    |+-++...++   ..+.||.+|+|..+                             
T Consensus        19 ~~G~vv~l~---~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~   92 (161)
T 1f3z_A           19 LSGEIVNIE---DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELK   92 (161)
T ss_dssp             SCEEEEEGG---GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGT
T ss_pred             CCeEEEEeE---ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcC
Confidence            469999874   56787766    8899888876   58899999999999                             


Q ss_pred             ------eeCCCCeecCCCeEEEEE
Q psy6394         247 ------YYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       247 ------~~~~g~~v~vG~~l~~i~  264 (1045)
                            ++++||.|+.|++|+.++
T Consensus        93 G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           93 GEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             TTTEEECSCTTCEECTTCEEEEEC
T ss_pred             CCccEEEEeCcCEECCCCEEEEEC
Confidence                  899999999999999996

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=91.72  E-value=0.35  Score=54.86  Aligned_cols=58  Identities=10%  Similarity=0.054  Sum_probs=50.4

Q ss_pred             EEEeeeccCCCCeeccCCeEeEEec------cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         464 IKEWNGNVTEGARINEFDVVCEVES------DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       464 i~~w~~~v~~Gd~V~~gd~l~~vet------dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      +.+.+  ++.||.|++||+|++|-.      .....+|.||.+|+|...  ...-.|..|+.|+.|..
T Consensus       300 l~~~~--v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          300 MVEYL--GKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASASVHQGTELYKVMT  363 (368)
T ss_dssp             EEEEC--SCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSSEECTTCEEEEEEE
T ss_pred             EEEEe--CCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEee
Confidence            67788  999999999999999998      567889999999999776  45678889999988864

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=90.79  E-value=0.22  Score=49.51  Aligned_cols=59  Identities=8%  Similarity=0.052  Sum_probs=50.2

Q ss_pred             ceEEEEEEeccCCCCCeecC----CCeEEEEEcCCceeEEeCCCCeEEEE------------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRK------------------------------  245 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~~i~s~~~G~v~~------------------------------  245 (1045)
                      -.|+|+..   -++.|.|-.    |+-++...++   ..+.||.+|+|..                              
T Consensus        14 ~~G~vv~l---~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~   87 (154)
T 2gpr_A           14 CDGTIITL---DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLD   87 (154)
T ss_dssp             SSEEEECG---GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGT
T ss_pred             CCeEEEEe---eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcC
Confidence            35888886   456788766    8889888876   5899999999998                              


Q ss_pred             -----EeeCCCCeecCCCeEEEEE
Q psy6394         246 -----VYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       246 -----i~~~~g~~v~vG~~l~~i~  264 (1045)
                           +++++||.|+.|++|+.++
T Consensus        88 G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           88 GNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             TCSEEECCCTTCEECTTCEEEEEC
T ss_pred             CCceEEEEcCCCEEcCCCEEEEEC
Confidence                 4899999999999999996

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=90.06  E-value=0.34  Score=48.43  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             ceeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE-----------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV-----------------------------  506 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i-----------------------------  506 (1045)
                      -.|+|+...   ++.|.+-.    |+-++...++   ..+.||++|+|..+                             
T Consensus        19 ~~G~vv~l~---~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~   92 (161)
T 1f3z_A           19 LSGEIVNIE---DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELK   92 (161)
T ss_dssp             SCEEEEEGG---GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGT
T ss_pred             CCeEEEEeE---ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcC
Confidence            368888865   67777766    8888888876   47899999999998                             


Q ss_pred             ------eeCCCCEEecCCceEEEee
Q psy6394         507 ------YYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       507 ------~~~~G~~v~vg~~l~~i~~  525 (1045)
                            ++++||.|+.|++|+.++.
T Consensus        93 G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           93 GEGFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             TTTEEECSCTTCEECTTCEEEEECH
T ss_pred             CCccEEEEeCcCEECCCCEEEEECH
Confidence                  8899999999999999964

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=89.84  E-value=0.19  Score=50.38  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=50.2

Q ss_pred             ceEEEEEEeccCCCCCeecC----CCeEEEEEcCCceeEEeCCCCeEEEEE-----------------------------
Q psy6394         200 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV-----------------------------  246 (1045)
Q Consensus       200 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~~i~s~~~G~v~~i-----------------------------  246 (1045)
                      -.|+|+..   .++.|.|-.    |+-++...++   ..+.||.+|+|..+                             
T Consensus        19 ~~G~vv~l---~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~   92 (162)
T 1ax3_A           19 ITGEIHPI---TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLK   92 (162)
T ss_dssp             CSEEEEEG---GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTT
T ss_pred             CceEEEEe---EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcC
Confidence            46999987   457787766    8888877763   58899999999988                             


Q ss_pred             ------eeCCCCeecCCCeEEEEE
Q psy6394         247 ------YYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       247 ------~~~~g~~v~vG~~l~~i~  264 (1045)
                            ++++||.|+.|++|+.++
T Consensus        93 G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           93 GEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             TTTEEESCCCCSEECSEEEEEEEC
T ss_pred             CCccEEEEeCCCEEcCCCEEEEEC
Confidence                  899999999999999996

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}

Probab=89.54  E-value=0.49  Score=46.28  Aligned_cols=99  Identities=10%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             cHHHHHHhhcCC-----C--Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHH
Q psy6394           3 NVLSVSRSLRSI-----C--KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLD   74 (1045)
Q Consensus         3 ~~~~~~~~~~s~-----~--~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~   74 (1045)
                      +++++..|.+..     .  .. |.|||....                 .+++|++.++|+.--   -+..-.+|.+-+.
T Consensus        14 vll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~-----------------~~veV~nsF~~p~~~---~~~~~~~d~~y~~   73 (141)
T 4e0q_A           14 VIMNISEHWTRFRAQHGEPRQVYGALIGKQKG-----------------RNIEIMNSFELKTDV---IGDETVINKDYYN   73 (141)
T ss_dssp             HHHHHHHHHHCC------CCEEEEEEEEEEET-----------------TEEEEEEEEECCEEE---ETTEEEECHHHHH
T ss_pred             HHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC-----------------CEEEEEEEEEecccC---CCCceeecHHHHH
Confidence            466777777431     1  33 999997631                 147788999998311   1111256665555


Q ss_pred             HHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394          75 TILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV  130 (1045)
Q Consensus        75 ~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~  130 (1045)
                      +.+.-.     +.++||||.--.    .++-.+..+|+++++..     +.-+++++.+..
T Consensus        74 ~m~~~~k~v~~~e~iVGWY~s~~----~~~~~d~~i~~~~~~~~-----~~pV~L~~Dp~~  125 (141)
T 4e0q_A           74 KKEQQYKQVFSDLDFIGWYTTGD----NPTADDIKIQRQIAAIN-----ECPIMLQLNPLS  125 (141)
T ss_dssp             HHHHHHHHHSTTCEEEEEEEEEC-----------CHHHHHHHTT-----CCCEEEEESCSC
T ss_pred             HHHHHHHHhCCCccEEEEEeCCC----CCCcchHHHHHHHHHHC-----CCCEEEEECCCc
Confidence            444332     356999997642    35566678998877653     224666666554

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=88.67  E-value=0.37  Score=47.88  Aligned_cols=59  Identities=8%  Similarity=0.109  Sum_probs=49.2

Q ss_pred             eeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE------------------------------
Q psy6394         461 EVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV------------------------------  506 (1045)
Q Consensus       461 eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i------------------------------  506 (1045)
                      .|+|+...   ++.|.+-.    |+-++...++   ..+.||++|+|..+                              
T Consensus        15 ~G~vv~l~---~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G   88 (154)
T 2gpr_A           15 DGTIITLD---EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDG   88 (154)
T ss_dssp             SEEEECGG---GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTT
T ss_pred             CeEEEEee---ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCC
Confidence            57788754   66777766    8888888876   48999999999984                              


Q ss_pred             -----eeCCCCEEecCCceEEEee
Q psy6394         507 -----YYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       507 -----~~~~G~~v~vg~~l~~i~~  525 (1045)
                           ++++||.|+.|++|+.++.
T Consensus        89 ~gF~~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           89 NGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             CSEEECCCTTCEECTTCEEEEECH
T ss_pred             CceEEEEcCCCEEcCCCEEEEECH
Confidence                 7899999999999999964

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=88.19  E-value=1.3  Score=49.47  Aligned_cols=60  Identities=18%  Similarity=0.098  Sum_probs=48.5

Q ss_pred             eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      .+.+...+  ++.|+.|++||+|+++-.    .....+|.||.+|+|.-..  ..-.|..|+.|+.|.
T Consensus       264 ~~G~~~~~--~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia  327 (332)
T 2qj8_A          264 SPGIFEPR--CSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA  327 (332)
T ss_dssp             SSEEEEEC--SCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred             CCeEEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence            34566676  889999999999999954    5678899999999996664  455688888998885

>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.46  E-value=1.4  Score=49.38  Aligned_cols=87  Identities=17%  Similarity=0.325  Sum_probs=51.8

Q ss_pred             cHHHHHHhhc---CC-C-Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC---CccHHHH
Q psy6394           3 NVLSVSRSLR---SI-C-KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG---TLNEVLL   73 (1045)
Q Consensus         3 ~~~~~~~~~~---s~-~-~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g---~i~~~~l   73 (1045)
                      +++++..|..   .. . .+ |.|||...                 ..+|+|++.++|+-   .--+..+   .+|.+-+
T Consensus        14 Vll~I~dH~~R~~~~~~~rViG~LLG~~~-----------------~~~veV~nsF~~p~---~e~~~~~~~~~~D~~y~   73 (338)
T 4b4t_U           14 VLLSALDHYERTQTKENKRCVGVILGDAN-----------------SSTIRVTNSFALPF---EEDEKNSDVWFLDHNYI   73 (338)
T ss_dssp             HHHHHHHHHHHHTTTCCSCCEEEEEEEEC-----------------SSEEEEEEEEECCE---EECSSSTTCEEECHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCeEEEEEEeEEc-----------------CCEEEEEEEEEecc---ccCCCCCccccccHHHH
Confidence            4667776642   12 2 44 99999431                 12478899999981   1111122   2465544


Q ss_pred             HHHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394          74 DTILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF  113 (1045)
Q Consensus        74 ~~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~  113 (1045)
                      ++.+.-.     +..+||||.    |...++-.+..||+.|....
T Consensus        74 ~~m~~~~kkV~~~e~iVGWY~----tg~~~~~~d~~Ih~~~~~~~  114 (338)
T 4b4t_U           74 ENMNEMCKKINAKEKLIGWYH----SGPKLRASDLKINELFKKYT  114 (338)
T ss_dssp             HHHHHHHHHHCCSCEEEEEEE----CCSSCCSTHHHHHHHHGGGC
T ss_pred             HHHHHHHhhcCccCCEEEEEe----cCCCCCccHHHHHHHHHhcc
Confidence            4433322     345999996    45567778899997776654

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=86.44  E-value=0.5  Score=47.34  Aligned_cols=60  Identities=20%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             ceeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE-----------------------------
Q psy6394         460 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV-----------------------------  506 (1045)
Q Consensus       460 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i-----------------------------  506 (1045)
                      -.|+|+..-   ++.|.+-.    |+-++...++   ..+.||++|+|..+                             
T Consensus        19 ~~G~vv~l~---~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~   92 (162)
T 1ax3_A           19 ITGEIHPIT---DVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLK   92 (162)
T ss_dssp             CSEEEEEGG---GSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTT
T ss_pred             CceEEEEeE---ECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcC
Confidence            357888854   56777666    8888877773   47899999999988                             


Q ss_pred             ------eeCCCCEEecCCceEEEee
Q psy6394         507 ------YYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       507 ------~~~~G~~v~vg~~l~~i~~  525 (1045)
                            ++++||.|+.|++|+.++.
T Consensus        93 G~gF~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           93 GEGFTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             TTTEEESCCCCSEECSEEEEEEECH
T ss_pred             CCccEEEEeCCCEEcCCCEEEEECH
Confidence                  7899999999999999974

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=86.14  E-value=0.82  Score=46.83  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=27.5

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEE
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV  246 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i  246 (1045)
                      ..+  |++|+.|++||.||+-.      .|-+.++|+|.+.
T Consensus        22 ~L~--V~dG~~VkkG~~laeWD------PIitE~~G~V~d~   54 (193)
T 2xha_A           22 KLH--VNNGKDVNKGDLIAEEP------PIYARRSGVIVDV   54 (193)
T ss_dssp             EES--CCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred             EEE--ECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence            346  99999999999999765      7889999998543

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=82.82  E-value=2.5  Score=47.10  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=47.7

Q ss_pred             EEEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         463 NIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       463 ~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      -+....  ++.|+.|++||+|+++-.    .....+|.||.+|+|.-..  ..-.|..|+.|+.|..
T Consensus       266 G~~~~~--~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia~  328 (332)
T 2qj8_A          266 GIFEPR--CSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILAR  328 (332)
T ss_dssp             EEEEEC--SCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEEE
T ss_pred             eEEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEee
Confidence            355677  899999999999999954    5678899999999997664  5667788888888754

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=82.01  E-value=1.7  Score=44.54  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=27.3

Q ss_pred             EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEE
Q psy6394         466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV  506 (1045)
Q Consensus       466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i  506 (1045)
                      ..+  |++|+.|++||.||+-.      .|-|.++|+|.+.
T Consensus        22 ~L~--V~dG~~VkkG~~laeWD------PIitE~~G~V~d~   54 (193)
T 2xha_A           22 KLH--VNNGKDVNKGDLIAEEP------PIYARRSGVIVDV   54 (193)
T ss_dssp             EES--CCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred             EEE--ECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence            457  99999999999999765      7888888888433

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.25  E-value=4.5  Score=44.58  Aligned_cols=106  Identities=17%  Similarity=0.220  Sum_probs=57.0

Q ss_pred             cHHHHHHhhcCCCC-c--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHH---HHHHH
Q psy6394           3 NVLSVSRSLRSICK-T--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEV---LLDTI   76 (1045)
Q Consensus         3 ~~~~~~~~~~s~~~-~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~---~l~~i   76 (1045)
                      +|+.+..|..++.. +  |+|+|+..        |.        .+++|+..+||+..-+  -...-.++..   .+-+.
T Consensus        33 allkm~~Ha~~~~~~eV~GlLlG~~~--------~~--------~~v~Vt~~f~~P~~~~--~~~v~~~d~~y~~~m~~~   94 (306)
T 4b4t_V           33 ALLKMLKHGRAGVPMEVMGLMLGEFV--------DD--------YTVNVVDVFAMPQSGT--GVSVEAVDDVFQAKMMDM   94 (306)
T ss_dssp             HHHHHHHHTCSCSSSCCEEEEEEEEE--------TT--------TEEEEEEEECCCCEES--SSCEECCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEEEEeeEEc--------CC--------eEEEEEEEEeCCcCCC--CCchhcCCHHHHHHHHHH
Confidence            46677778887663 3  99999642        11        2467888899974210  0111123443   23344


Q ss_pred             hcc--CCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeecccc
Q psy6394          77 LGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVV  131 (1045)
Q Consensus        77 l~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~~  131 (1045)
                      ++.  +..++||||.=--...--+|-.+--.|.+++..     ...++.+.+.+..+
T Consensus        95 ~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~-----~~~~V~lV~Dp~~t  146 (306)
T 4b4t_V           95 LKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQL-----NSRAVAVVVDPIQS  146 (306)
T ss_dssp             HHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHH-----CSSCEEEEECSSSS
T ss_pred             HHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhc-----CCCcEEEEECCCcC
Confidence            443  236699999654333334555554444333332     24466666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1045
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	2e-42
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	7e-28
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	8e-34
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	6e-23
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	8e-34
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	3e-25
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	2e-30
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	4e-22
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	6e-26
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	4e-18
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	7e-18
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	2e-17
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-16
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-15
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-14
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	7e-14
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-14
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	7e-14
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-13
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-13
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	3e-13
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	1e-12
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-12
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-12
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	8e-11
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-10
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	9e-11
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	2e-04
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	4e-08
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	4e-04
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-06
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-06
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	3e-05
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	3e-05

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  152 bits (385), Expect = 2e-42
 Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
           +P+    K + + + EA N+   L    EV+   + D++ Q    ++++  ++L +M F+
Sbjct: 7   VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66

Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
           +KA+   +  +P +NASID   ++++ +   ++S+A+ T  GLV P ++ V+ L + DI 
Sbjct: 67  VKAVVEALKRYPEVNASID--GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124

Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
           +++  +     +GK+   D+ GG  +++N G  G  +  PII P Q  I+    I+  P 
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184

Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
                ++    ++ +  + DHR++DG          K  LE+
Sbjct: 185 AV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLED 225

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (277), Expect = 7e-28
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            ++++ +   ++S+A+ T  GLV P ++ V+ L + DI +++  +     +GK+   D+ G
Sbjct: 87   DDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTG 146

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
            G  +++N G  G  +  PII P Q  I+    I+  P        +   ++ +  + DHR
Sbjct: 147  GNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILP-MMYLALSYDHR 205

Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
            ++DG          K L+E+P  LL
Sbjct: 206  LIDGRESVGFLVTIKELLEDPTRLL 230

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (320), Expect = 8e-34
 Identities = 26/204 (12%), Positives = 57/204 (27%), Gaps = 25/204 (12%)

Query: 699 TIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASID 758
              +   T ++D          ++A  +   + K  + P FI  L+  M  HP    ++ 
Sbjct: 25  AQCTYNQTVQLD----------ITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMK 74

Query: 759 PTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVL-PR 817
                +++    +    +  +      ++ S              +   C  E     P+
Sbjct: 75  --DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPK 132

Query: 818 DIQGGTISMSNVGNVGGTLVQPIIVPGQ---VCIVAFGKIQLLPRFDAEMRIVAKCILNV 874
                   +S    V  T     +         +   GK      +    ++    ++ +
Sbjct: 133 GFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY-----YTQGDKV----LMPL 183

Query: 875 TWAADHRVVDGATVARAATLWKSL 898
                H V DG  V R     +  
Sbjct: 184 AIQVHHAVCDGFHVGRMLNELQQY 207

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 96.1 bits (239), Expect = 6e-23
 Identities = 16/145 (11%), Positives = 36/145 (24%), Gaps = 13/145 (8%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVL-PRDIQ 957
              +++    +    +  +      ++ S              +   C  E     P+   
Sbjct: 76   GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFI 135

Query: 958  GGTISMSNVGNVGGTLVQPIIV---PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWA 1014
                 +S    V  T     +         +   GK      +    +V    ++ +   
Sbjct: 136  ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY-----YTQGDKV----LMPLAIQ 186

Query: 1015 ADHRVVDGATVARAATLWKSLVENP 1039
              H V DG  V R     +   +  
Sbjct: 187  VHHAVCDGFHVGRMLNELQQYCDEW 211

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  128 bits (322), Expect = 8e-34
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 4/222 (1%)

Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
             + G  + + K+M  + +T P + L +E D T+L   + +  A+  EK   KLT++P+ 
Sbjct: 17  EKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGI-KLTFLPYV 75

Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
           +KAL   + E+P+LN SID   E I+    +NI IA DT  GL+VP IK  ++  +  + 
Sbjct: 76  VKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA 135

Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
           +E+  +   + +GK+ P +++G + +++N+G+ GG    P+I   +V I+  G+I   P 
Sbjct: 136 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPI 195

Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
              +  IVA  +L ++ + DHR++DGAT  +A    K  L +
Sbjct: 196 VR-DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSD 236

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  103 bits (258), Expect = 3e-25
 Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 1/145 (0%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            E I+    +NI IA DT  GL+VP IK  ++  +  + +E+  +   + +GK+ P +++G
Sbjct: 98   EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 157

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
             + +++N+G+ GG    P+I   +V I+  G+I   P    +  +VA  +L ++ + DHR
Sbjct: 158  ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSLSFDHR 216

Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
            ++DGAT  +A    K L+ +P LLL
Sbjct: 217  MIDGATAQKALNHIKRLLSDPELLL 241

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (294), Expect = 2e-30
 Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 17/203 (8%)

Query: 699 TIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASID 758
                 LT ++D          ++ L +        + P  I  ++  + +   L  +I 
Sbjct: 24  LPCGFSLTSKID----------ITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIK 73

Query: 759 PTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRD 818
              + ++V    +    +  +       +       +       L +         L   
Sbjct: 74  --DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQ 131

Query: 819 IQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAA 878
                  + N+  +         +        F  I  + ++  E     + +L ++   
Sbjct: 132 GVTPENHL-NISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQE---GDRLLLPLSVQV 187

Query: 879 DHRVVDGATVARAATLWKS-LEN 900
            H V DG  VAR     +    +
Sbjct: 188 HHAVCDGFHVARFINRLQELCNS 210

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score = 93.8 bits (233), Expect = 4e-22
 Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 8/143 (5%)

Query: 899  ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
            + ++V    +    +  +       +       +       L +         L      
Sbjct: 75   DELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT 134

Query: 959  GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVV--AKCILNVTWAAD 1016
                + N+  +         +               P            + +L ++    
Sbjct: 135  PENHL-NISALPWVNFDSFNLNVAN-----FTDYFAPIITMAKYQQEGDRLLLPLSVQVH 188

Query: 1017 HRVVDGATVARAATLWKSLVENP 1039
            H V DG  VAR     + L  + 
Sbjct: 189  HAVCDGFHVARFINRLQELCNSK 211

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  105 bits (262), Expect = 6e-26
 Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 680 VIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPF 738
            +P+   ++    ++  +   +P +   E  D T+L   +    A   EK  +KLT +P 
Sbjct: 17  EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKA-VAEKAGVKLTVLPL 75

Query: 739 FIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDI 798
            +KA +  + E P  N+S+ P+ + ++     +I  A+DT  GL+VP I++V++  LL +
Sbjct: 76  LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135

Query: 799 TRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP 858
             E   +   +   K+    +QG   ++S++G++GGT   PI+   +V I+   K  + P
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP 195

Query: 859 RFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
            +D +     + +L ++ + D RV++GA  AR        L +I
Sbjct: 196 VWDGKA-FQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADI 238

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 83.0 bits (204), Expect = 4e-18
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 904  NPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISM 963
                +I  A+DT  GL+VP I++V++ SLL +  E   +   +   K+    +QG   ++
Sbjct: 104  KKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTI 163

Query: 964  SNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGA 1023
            S++G++GGT   PI+   +V I+   K  + P +D +     + +L ++ + D RV++GA
Sbjct: 164  SSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDCRVINGA 222

Query: 1024 TVARAATLWKSLVENPALLL 1043
              AR       L+ +   +L
Sbjct: 223  AAARFTKRLGDLLADIRAIL 242

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (190), Expect = 7e-18
 Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 2/83 (2%)

Query: 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 245
           +++QFKL+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3   QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60

Query: 246 VYYGEGDVALVGKPLLDIEVEDE 268
           +YY   D+A VGKPL+DIE E  
Sbjct: 61  LYYNLDDIAYVGKPLVDIETEAL 83

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (186), Expect = 2e-17
 Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 2/83 (2%)

Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
           +++QF L+DIGEGIREV +KEW   V EG  +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3   QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60

Query: 506 VYYGEGDVALVGKPLLDIEVEDE 528
           +YY   D+A VGKPL+DIE E  
Sbjct: 61  LYYNLDDIAYVGKPLVDIETEAL 83

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.3 bits (175), Expect = 7e-16
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
            +FKL DIGEGI E  I +W   V  G  +NE DV+CEV++DKA V I S  KG V ++ 
Sbjct: 2   FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59

Query: 248 YGEGDVALVGKPLLDIEVE 266
             EG VA VG+ L+ ++  
Sbjct: 60  VPEGTVATVGQTLITLDAP 78

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
            +F L DIGEGI E  I +W   V  G  +NE DV+CEV++DKA V I S  KG V ++ 
Sbjct: 2   FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59

Query: 508 YGEGDVALVGKPLLDIEVE 526
             EG VA VG+ L+ ++  
Sbjct: 60  VPEGTVATVGQTLITLDAP 78

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           I  K     E I +  +  W+     G  +   +++ ++E+DK  + + +   G + ++ 
Sbjct: 2   IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59

Query: 248 YGEGDVALVGKPLLDIEVE 266
             EGD  L G+ L  +   
Sbjct: 60  KNEGDTVLSGELLGKLTEG 78

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 65.6 bits (160), Expect = 7e-14
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           I        E I +  +  W+     G  +   +++ ++E+DK  + + +   G + ++ 
Sbjct: 2   IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59

Query: 508 YGEGDVALVGKPLLDIEVE 526
             EGD  L G+ L  +   
Sbjct: 60  KNEGDTVLSGELLGKLTEG 78

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           +   + D+ E + +  +  W+     G  +   +V+ E+E+DK  + + +   G +  V 
Sbjct: 3   VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60

Query: 248 YGEGDVALVGKPLLDIEVED 267
             EG      + L  +   +
Sbjct: 61  EDEGTTVTSRQILGRLREGN 80

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 65.6 bits (160), Expect = 7e-14
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           +   + D+ E + +  +  W+     G  +   +V+ E+E+DK  + + +   G +  V 
Sbjct: 3   VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60

Query: 508 YGEGDVALVGKPLLDIEVED 527
             EG      + L  +   +
Sbjct: 61  EDEGTTVTSRQILGRLREGN 80

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           L++ K+ DIG     V+I      V  G  I   D +  +E+DKA++ + +   G V++V
Sbjct: 2   LVELKVPDIGG-HENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58

Query: 247 YYGEGDVALVGKPLLDIEVEDE 268
               GD    G  ++ +E E  
Sbjct: 59  KVKVGDKISEGGLIVVVEAEGT 80

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 62.9 bits (153), Expect = 6e-13
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           L++  + DIG     V+I      V  G  I   D +  +E+DKA++ + +   G V++V
Sbjct: 2   LVELKVPDIGG-HENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58

Query: 507 YYGEGDVALVGKPLLDIEVEDE 528
               GD    G  ++ +E E  
Sbjct: 59  KVKVGDKISEGGLIVVVEAEGT 80

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
           +Q  L  +   +    ++ W      G +++E D++ E+E+DKA++    + +G + K+ 
Sbjct: 6   MQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 63

Query: 248 YGEGDVAL-VGKPLLDIEVEDEGVAAEEADS 277
             EG   + +G PL  I  ++  ++A     
Sbjct: 64  VPEGTRDVPLGTPLCIIVEKEADISAFADYR 94

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
           +Q  L  +   +    ++ W      G +++E D++ E+E+DKA++    + +G + K+ 
Sbjct: 6   MQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 63

Query: 508 YGEGDVAL-VGKPLLDIEVEDEGVAAEEADS 537
             EG   + +G PL  I  ++  ++A     
Sbjct: 64  VPEGTRDVPLGTPLCIIVEKEADISAFADYR 94

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
           + +  + DIG    EV + E    V  G ++     +  VE DKAS+ + + + G V+++
Sbjct: 2   VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57

Query: 247 YYGEGDVALVGKPLLDIEVEDE 268
               GD    G  ++  EVE  
Sbjct: 58  KVNVGDKVKTGSLIMIFEVEGA 79

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 60.2 bits (146), Expect = 6e-12
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
           + + N+ DIG    EV + E    V  G ++     +  VE DKAS+ + + + G V+++
Sbjct: 2   VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57

Query: 507 YYGEGDVALVGKPLLDIEVEDE 528
               GD    G  ++  EVE  
Sbjct: 58  KVNVGDKVKTGSLIMIFEVEGA 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.8 bits (137), Expect = 8e-11
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 191 KLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 250
           ++ DIG    +  + E    V  G  I     +  +ES KAS+ + S   G V+ V    
Sbjct: 5   RVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59

Query: 251 GDVALVGKPLLDIEVED 267
           GD    G  ++++E   
Sbjct: 60  GDKLKEGDAIIELEPAA 76

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 55.3 bits (133), Expect = 3e-10
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 451 NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 510
            + DIG    +  + E    V  G  I     +  +ES KAS+ + S   G V+ V    
Sbjct: 5   RVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59

Query: 511 GDVALVGKPLLDIEVED 527
           GD    G  ++++E   
Sbjct: 60  GDKLKEGDAIIELEPAA 76

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 55.3 bits (134), Expect = 9e-11
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385
           +++A PSVR+  +   +D + ++GTGK GRVLKEDI  ++ 
Sbjct: 1   RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 41

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMN 593
             +D + ++GTGK GRVLKEDI  ++ 
Sbjct: 15  KGVDIRLVQGTGKNGRVLKEDIDAFLA 41

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (115), Expect = 4e-08
 Identities = 11/37 (29%), Positives = 25/37 (67%)

Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385
           +P++RR++  + +D   ++GTG  GR+ +ED+  ++ 
Sbjct: 2   SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 38

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMN 593
           + +D   ++GTG  GR+ +ED+  ++ 
Sbjct: 12  HNLDASAIKGTGVGGRLTREDVEKHLA 38

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 262
            + +    V EG  +     V  +E+ K    I +   G V KV   E D    G+ L+ 
Sbjct: 18  TVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75

Query: 263 I 263
           I
Sbjct: 76  I 76

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 522
            + +    V EG  +     V  +E+ K    I +   G V KV   E D    G+ L+ 
Sbjct: 18  TVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75

Query: 523 I 523
           I
Sbjct: 76  I 76

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
            +  G ++N  D +C VE+ K    I +   GTV+ +    G      +PL+ IE
Sbjct: 26  FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
            +  G ++N  D +C VE+ K    I +   GTV+ +    G      +PL+ IE
Sbjct: 26  FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1045
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	99.97
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	99.96
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	99.9
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	99.88
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.84
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.82
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.81
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.78
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.77
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.76
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.75
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.74
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.74
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.72
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.69
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.69
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.67
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.64
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.43
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.41
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.33
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.33
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.23
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.14
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.11
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.04
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.28
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.14
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	95.71
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	95.59
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	90.17
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	89.66

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-58  Score=490.79  Aligned_cols=229  Identities=26%  Similarity=0.467  Sum_probs=214.5

Q ss_pred             cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394         677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA  755 (1045)
Q Consensus       677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa  755 (1045)
                      .++++|++++||+||++|.+| +++||+|++.+||+++|+++|+++++...+..+.++|+++|++||++.||++||.+|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            356789999999999999999 8999999999999999999999998876655459999999999999999999999999


Q ss_pred             EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394         756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT  835 (1045)
Q Consensus       756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~  835 (1045)
                      +|++  +++                                                                       
T Consensus        83 ~~~~--~~i-----------------------------------------------------------------------   89 (233)
T d1scza_          83 SIDG--DDV-----------------------------------------------------------------------   89 (233)
T ss_dssp             EEET--TEE-----------------------------------------------------------------------
T ss_pred             EEcC--CeE-----------------------------------------------------------------------
Confidence            9974  111                                                                       


Q ss_pred             eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEec
Q psy6394         836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDT  915 (1045)
Q Consensus       836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~  915 (1045)
                                                                                        +.++++||||||++
T Consensus        90 ------------------------------------------------------------------~~~~~vnIgiAv~~  103 (233)
T d1scza_          90 ------------------------------------------------------------------VYHNYFDVSMAVST  103 (233)
T ss_dssp             ------------------------------------------------------------------ECCSSCCEEECEEE
T ss_pred             ------------------------------------------------------------------EEeccceEEEEEEc
Confidence                                                                              33355789999999


Q ss_pred             CCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEe
Q psy6394         916 KHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLP  995 (1045)
Q Consensus       916 ~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~p  995 (1045)
                      ++||+||||||||+||+.||++++++|++++|+|+|+++||+||||||||+||+|+++|+|||||||+||||+|+++++|
T Consensus       104 ~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~tpii~ppq~aIl~vG~i~~~p  183 (233)
T d1scza_         104 PRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP  183 (233)
T ss_dssp             TTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEE
T ss_pred             CCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceeeeeecCCCCceEEecccceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394         996 RFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus       996 v~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
                      ++.+| ++++|++|+||||||||+|||++||+||++|+++||||+.||+|
T Consensus       184 v~~~g-~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll~  232 (233)
T d1scza_         184 MAVNG-QVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLD  232 (233)
T ss_dssp             EEETT-EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHT
T ss_pred             cccCC-eEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhhC
Confidence            99876 89999999999999999999999999999999999999999986

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=1.8e-55  Score=472.17  Aligned_cols=229  Identities=24%  Similarity=0.411  Sum_probs=220.2

Q ss_pred             CcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccc
Q psy6394         676 EASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILN  754 (1045)
Q Consensus       676 ~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lN  754 (1045)
                      +..+++||+++||+||++|.+| +++||+|++.|+|+++|+++|+.+++..++.+ .|+|+++|++||++.||++||.+|
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~-~k~t~~~~iikA~a~Al~~~P~~N   91 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAG-VKLTVLPLLLKACAYLLKELPDFN   91 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTT-CCCCSHHHHHHHHHHHHHHSGGGG
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcC-ccccHHHHHHHHHHHHHHHhhhhh
Confidence            4567889999999999999999 89999999999999999999999988776667 999999999999999999999999


Q ss_pred             eEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccc
Q psy6394         755 ASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG  834 (1045)
Q Consensus       755 a~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~  834 (1045)
                      ++|++++..+++++++||||||++++||+||||++++.+++.+|++++++|.+++|+|+|+++|++||||||||+|+||+
T Consensus        92 s~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~  171 (243)
T d1dpba_          92 SSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG  171 (243)
T ss_dssp             EEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCC
T ss_pred             hccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccc
Confidence            99998778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         835 TLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       835 ~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      ++|+|||||||+||||+|+++++|+++ +|++++|++|+++|+|||||+||+++|+||+.++++   +|+|..++
T Consensus       172 ~~~tpiInppq~aIlgvG~i~~~pv~~-~~~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~---lE~P~~ll  242 (243)
T d1dpba_         172 TAFTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDL---LADIRAIL  242 (243)
T ss_dssp             SCCCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHH---HHCGGGGG
T ss_pred             eeEEeeeccccceeeecccceeeEEEE-CCEEEEEEEEEEEEEeecccccHHHHHHHHHHHHHH---HhCHHHHh
Confidence            999999999999999999999999995 789999999999999999999999999999999999   99998764

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2e-54  Score=464.67  Aligned_cols=228  Identities=32%  Similarity=0.546  Sum_probs=219.8

Q ss_pred             cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394         677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA  755 (1045)
Q Consensus       677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa  755 (1045)
                      .++++|++++||+||++|.+| +++||+|++.|+|+|+|+++|+++++..++.| .|+|+++|++||+++||++||.+|+
T Consensus        13 ~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g-~klT~~~~likA~a~AL~~~P~~Na   91 (242)
T d1b5sa_          13 PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKG-IKLTFLPYVVKALVSALREYPVLNT   91 (242)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTT-CCCCSHHHHHHHHHHHHHHCGGGSC
T ss_pred             CceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcc-cccchhhHHHHHHHHHHHHhhhhhe
Confidence            456689999999999999999 78999999999999999999999998777777 9999999999999999999999999


Q ss_pred             EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394         756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT  835 (1045)
Q Consensus       756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~  835 (1045)
                      +|+++.+.+.+++++||||||++++||++|||+++|.+++.+|+++++++.+++|+|+|+++|++||||||||+|+||+.
T Consensus        92 ~~~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~  171 (242)
T d1b5sa_          92 SIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQ  171 (242)
T ss_dssp             CBCTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCS
T ss_pred             EEcCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCcc
Confidence            99987788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      +|+|||||||+||||+|+++++|++ .||++++|++|+++|+||||+|||+++|+||+.++++   +|||..++
T Consensus       172 ~ftpii~~pq~ail~vG~i~~~pv~-~dg~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~---lE~P~~ll  241 (242)
T d1b5sa_         172 WFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRL---LSDPELLL  241 (242)
T ss_dssp             CCCCCCCTTCCEEEEECCCEEEEEE-CSSSEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHH---HHCGGGTT
T ss_pred             ceecccccccceEEeccceEEEEEE-ECCeEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHH---HhCHHHHh
Confidence            9999999999999999999999999 6899999999999999999999999999999999999   99998764

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=9.1e-44  Score=380.96  Aligned_cols=143  Identities=27%  Similarity=0.473  Sum_probs=139.7

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      ++.+.++||||||++++||+||||+||++|+|.+|++++++|+++||+|+|+++|++||||||||+||+|+++|+|||||
T Consensus       101 ~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~~~tpiInp  180 (243)
T d1dpba_         101 LIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA  180 (243)
T ss_dssp             EEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCCCCCCCT
T ss_pred             ceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccceeEEeeecc
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+||||+|+++++|+++++ ++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus       181 pq~aIlgvG~i~~~pv~~~~-~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll  243 (243)
T d1dpba_         181 PEVAILGVSKASMQPVWDGK-AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             TSSEEEEECCCEEEEEECSS-SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             ccceeeecccceeeEEEECC-EEEEEEEEEEEEEeecccccHHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999876 8999999999999999999999999999999999999999986

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.9e-42  Score=369.82  Aligned_cols=143  Identities=32%  Similarity=0.583  Sum_probs=139.6

Q ss_pred             ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394         901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP  980 (1045)
Q Consensus       901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~  980 (1045)
                      |..+.++|+||||++++||++|||+|||+|++.+|+++++++++++|+|+|+++||+||||||||+|++|+.+|+|||||
T Consensus       100 i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~ftpii~~  179 (242)
T d1b5sa_         100 IIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINH  179 (242)
T ss_dssp             BCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCCCCCCCT
T ss_pred             EEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccceeccccc
Confidence            47778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394         981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus       981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
                      ||+||||+|++.++|++++| ++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus       180 pq~ail~vG~i~~~pv~~dg-~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  242 (242)
T d1b5sa_         180 PEVAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM  242 (242)
T ss_dssp             TCCEEEEECCCEEEEEECSS-SEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHHHHCGGGTTC
T ss_pred             ccceEEeccceEEEEEEECC-eEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999876 8999999999999999999999999999999999999999986

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=322.25  Aligned_cols=138  Identities=26%  Similarity=0.445  Sum_probs=134.0

Q ss_pred             CCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccccee
Q psy6394         768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC  847 (1045)
Q Consensus       768 ~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~a  847 (1045)
                      +++|||+||++++||+||||+++|.+++.||+++++++.+++|+|+|+++|++||||||||+|+||+++|+|||||||+|
T Consensus        93 ~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~tpii~ppq~a  172 (233)
T d1scza_          93 NYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSA  172 (233)
T ss_dssp             SSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSE
T ss_pred             ccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceeeeeecCCCCce
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394         848 IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI  909 (1045)
Q Consensus       848 ilavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I  909 (1045)
                      |||+|+++++|++ .+|+++++++|+++|+||||+|||++||+||+.++++   +|+|..++
T Consensus       173 Il~vG~i~~~pv~-~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~---lE~P~~ll  230 (233)
T d1scza_         173 ILGMHAIKDRPMA-VNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKEL---LEDPTRLL  230 (233)
T ss_dssp             EEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHCTTHHH
T ss_pred             EEecccceeeccc-cCCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHH---HhCHHHHh
Confidence            9999999999998 6899999999999999999999999999999999999   99998653

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-30  Score=274.84  Aligned_cols=202  Identities=15%  Similarity=0.146  Sum_probs=171.5

Q ss_pred             eeeecCch-hhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEE
Q psy6394         679 NVIPIRGY-VKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASI  757 (1045)
Q Consensus       679 ~~~pls~~-rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~  757 (1045)
                      +.+.+..- ||..-... .....||++++.++|+|+|++++++          .++|++++++||+++||.++|+||++|
T Consensus         5 k~ID~~~W~R~~~f~~f-~~~~~P~f~it~~vDvT~l~~~~K~----------~~~sf~~~~~~av~~Al~~~P~~n~~~   73 (214)
T d1q23a_           5 TTVDISQWHRKEHFEAF-QSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAM   73 (214)
T ss_dssp             EECCGGGCTTHHHHHHH-TTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEE
T ss_pred             eEeccccCcCHHHHHHH-hCCCCCeEEEEEEEcHHHHHHHHHH----------cCCCcHHHHHHHHHHHHHhChHhheEE
Confidence            34444442 44443332 2357999999999999999988763          478999999999999999999999999


Q ss_pred             cCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCC-CCCCccCCCceEeeccCCcccee
Q psy6394         758 DPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGK-VLPRDIQGGTISMSNVGNVGGTL  836 (1045)
Q Consensus       758 ~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k-l~~~d~~ggTftISNlG~~G~~~  836 (1045)
                      ++  +++++++++|+|+||++++||++|++++++.+++.++++++.++..++++++ |.+++++||||||||+|++|.+.
T Consensus        74 ~~--~~i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~  151 (214)
T d1q23a_          74 KD--GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTS  151 (214)
T ss_dssp             ET--TEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSE
T ss_pred             cC--CceeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccC
Confidence            84  6899999999999999999999999999999999999999998888888765 99999999999999999999887


Q ss_pred             ecccccccc---eeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccC
Q psy6394         837 VQPIIVPGQ---VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP  905 (1045)
Q Consensus       837 ~tpii~~pq---~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p  905 (1045)
                      +++.++.++   +.++++|++..+     +|    |.+|++++++|||++||+++|+|++.++++   +++.
T Consensus       152 ~~~~~~~~~~~~vpii~~Gk~~~~-----~~----r~~mplsls~dHrvvDG~~~a~Fl~~lq~~---le~~  211 (214)
T d1q23a_         152 FDLNVANMDNFFAPVFTMGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQY---CDEW  211 (214)
T ss_dssp             EEEEESCCTTCCSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHHC
T ss_pred             ccCCCCCCccceeeEEEecceEEE-----CC----EEEEEEEEEecccccchHHHHHHHHHHHHH---Hhhc
Confidence            766655553   468999986432     34    568999999999999999999999999999   7764

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8.4e-30  Score=268.15  Aligned_cols=193  Identities=13%  Similarity=0.151  Sum_probs=162.7

Q ss_pred             hhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEE
Q psy6394         687 VKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILV  766 (1045)
Q Consensus       687 rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~  766 (1045)
                      ||...... ...+.||++++.++|+|+|.+++++          .+++++++++||+++||.+||.||++|++  +++++
T Consensus        13 Rk~~f~~f-~~~~~P~~~~t~~vDvT~l~~~~K~----------~~~sf~~~~~~a~~~Al~~~P~~n~~~~~--~~i~~   79 (213)
T d3claa_          13 RREHFEFY-RHRLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKD--DELIV   79 (213)
T ss_dssp             THHHHHHH-HHTSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEET--TEEEE
T ss_pred             cHHHHHHH-hCCCCCEEEEEEEEeHHHHHHHHHH----------cCCCeeHHHHHHHHHHHHhChHhhhEecc--CeEEE
Confidence            55555443 2267899999999999999887753          47899999999999999999999999984  78999


Q ss_pred             cCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCC-CCCCccCCCceEeeccCCccceeecccccccc
Q psy6394         767 NPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGK-VLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ  845 (1045)
Q Consensus       767 ~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k-l~~~d~~ggTftISNlG~~G~~~~tpii~~pq  845 (1045)
                      ++++|+|+||++++||++|+|++++.+++.++++++.++++++|+++ +.+++ .+|+.++ |+|++|+..||+++++|+
T Consensus        80 ~~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~-~~~~~~~-~is~l~~~~Ft~i~~~~~  157 (213)
T d3claa_          80 WDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQG-VTPENHL-NISALPWVNFDSFNLNVA  157 (213)
T ss_dssp             ESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTS-SCCSSEE-EEEEETTCCCSCCCCCCS
T ss_pred             ecccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccc-cCCCcEE-EeeccCceEeecccCCcc
Confidence            99999999999999999999999999999999999999999999987 44444 4444444 777778888999999987


Q ss_pred             ee------eEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCC
Q psy6394         846 VC------IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD  906 (1045)
Q Consensus       846 ~a------ilavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~  906 (1045)
                      ..      ++..|++..+     +|    |.+|++++++|||++||+++|+|++.++++   +++|.
T Consensus       158 ~~~~~~~Pii~~Gk~~~~-----~~----r~~m~lsls~dHrviDG~~aa~Fl~~lk~~---le~p~  212 (213)
T d3claa_         158 NFTDYFAPIITMAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQEL---CNSKL  212 (213)
T ss_dssp             CCTTCCSCEEEEECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HTSCC
T ss_pred             cCccccccEEecCccEEE-----CC----EEEEEEEEEecccccccHHHHHHHHHHHHH---HhCcC
Confidence            75      4555543221     22    678999999999999999999999999999   99984

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7.4e-24  Score=222.37  Aligned_cols=131  Identities=12%  Similarity=0.106  Sum_probs=117.6

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCC-CCccccCCCceeeecCCCCCCcceeeee
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGK-VLPRDIQGGTISMSNVGNVGGTLVQPII  978 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~-l~~~d~~ggTftiSNlG~~g~~~~~~ii  978 (1045)
                      +|+++..+|+|+||++++||++|+|++++.+++.++++++.+++.++++++ |.++|++||||||||+|++|.+.++..+
T Consensus        77 ~i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~~~~  156 (214)
T d1q23a_          77 ELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNV  156 (214)
T ss_dssp             EEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEEEEE
T ss_pred             ceeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCccCCC
Confidence            358888999999999999999999999999999999999999999998876 9999999999999999999999887777


Q ss_pred             cCCc---eeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCc
Q psy6394         979 VPRQ---VCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENP 1039 (1045)
Q Consensus       979 n~pq---~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P 1039 (1045)
                      ++++   ++|+++|++..    .+|     |.+|+|||+||||+|||+++|+||+.|+++||+-
T Consensus       157 ~~~~~~~vpii~~Gk~~~----~~~-----r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le~~  211 (214)
T d1q23a_         157 ANMDNFFAPVFTMGKYYT----QGD-----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  211 (214)
T ss_dssp             SCCTTCCSCEEEECCCEE----ETT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccceeeEEEecceEE----ECC-----EEEEEEEEEecccccchHHHHHHHHHHHHHHhhc
Confidence            6654   66999998654    243     5689999999999999999999999999999873

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.8e-23  Score=218.00  Aligned_cols=131  Identities=12%  Similarity=0.152  Sum_probs=111.8

Q ss_pred             cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCC-CCccccCCCceeeecCCCCCCcceeeee
Q psy6394         900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGK-VLPRDIQGGTISMSNVGNVGGTLVQPII  978 (1045)
Q Consensus       900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~-l~~~d~~ggTftiSNlG~~g~~~~~~ii  978 (1045)
                      +|+++..+|+|+||++++||++|+|++++.+++.+++++++++++++|+++ +.+++ .+|++++ |+|++|...||+|+
T Consensus        76 ~i~~~~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~-~~~~~~~-~is~l~~~~Ft~i~  153 (213)
T d3claa_          76 ELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQG-VTPENHL-NISALPWVNFDSFN  153 (213)
T ss_dssp             EEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTS-SCCSSEE-EEEEETTCCCSCCC
T ss_pred             eEEEecccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccc-cCCCcEE-EeeccCceEeeccc
Confidence            357889999999999999999999999999999999999999999999987 45444 4444444 77777788899999


Q ss_pred             cCCcee------EEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcch
Q psy6394         979 VPRQVC------IVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPAL 1041 (1045)
Q Consensus       979 n~pq~a------il~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ 1041 (1045)
                      |||+.+      |+..|.+..    +++     |.+|+|||+||||+|||++||+||+.|+++||||..
T Consensus       154 ~~~~~~~~~~~Pii~~Gk~~~----~~~-----r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~p~k  213 (213)
T d3claa_         154 LNVANFTDYFAPIITMAKYQQ----EGD-----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK  213 (213)
T ss_dssp             CCCSCCTTCCSCEEEEECCEE----ETT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             CCcccCccccccEEecCccEE----ECC-----EEEEEEEEEecccccccHHHHHHHHHHHHHHhCcCC
Confidence            999887      666665543    232     679999999999999999999999999999999963

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.4e-21  Score=175.61  Aligned_cols=83  Identities=23%  Similarity=0.390  Sum_probs=77.9

Q ss_pred             cceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEE
Q psy6394         184 RHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLD  262 (1045)
Q Consensus       184 ~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~  262 (1045)
                      +++.++|+||+||++|+||+|++|+  |++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++||.
T Consensus         2 ~p~~iei~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~   79 (102)
T d1y8ob1           2 YPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI   79 (102)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred             CCCCEEEECCCCCCCccEEEEEEEE--eCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEE
Confidence            3567899999999999999999999  999999999999999999999999999999999999999998 5999999999


Q ss_pred             EEecCc
Q psy6394         263 IEVEDE  268 (1045)
Q Consensus       263 i~~~~~  268 (1045)
                      |..+++
T Consensus        80 i~~~~~   85 (102)
T d1y8ob1          80 IVEKEA   85 (102)
T ss_dssp             EESSGG
T ss_pred             EecCCc
Confidence            975544

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-20  Score=167.40  Aligned_cols=80  Identities=64%  Similarity=1.112  Sum_probs=76.7

Q ss_pred             eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      ..++|+||+||++|+||+|++|+  |++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.
T Consensus         3 ~~~~~~lP~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~   80 (87)
T d1k8ma_           3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (87)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEEC--CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             ccEEEECCCCCCCceeEEEEEEE--cCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            45789999999999999999999  9999999999999999999999999999999999999999999999999999985


Q ss_pred             cC
Q psy6394         266 ED  267 (1045)
Q Consensus       266 ~~  267 (1045)
                      ++
T Consensus        81 ~~   82 (87)
T d1k8ma_          81 EA   82 (87)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.81  E-value=2e-20  Score=164.57  Aligned_cols=77  Identities=21%  Similarity=0.431  Sum_probs=74.8

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ++|+||+||++|+||+|.+|+  |++||+|++||+||+|||||++++|+||++|+|.++++++||.|++|++|+.|+.+
T Consensus         2 iei~~P~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCS--SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEE--cCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            579999999999999999999  99999999999999999999999999999999999999999999999999999754

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.79  E-value=8.2e-21  Score=167.31  Aligned_cols=77  Identities=48%  Similarity=0.769  Sum_probs=74.5

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      ++|+||+||++|+||+|++|+  |++||.|++||+||+|||||++++|+||.+|+|.++++++||.|++|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECC--CSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEE--eCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            478999999999999999999  99999999999999999999999999999999999999999999999999999754

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.6e-19  Score=164.75  Aligned_cols=83  Identities=23%  Similarity=0.394  Sum_probs=77.5

Q ss_pred             ceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEE
Q psy6394         445 HKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDI  523 (1045)
Q Consensus       445 ~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i  523 (1045)
                      +..++|+||+||++|++|+|++|+  |++||.|++||+||+|||||+++||+||++|+|.++++++|+ .+++|++|++|
T Consensus         3 p~~iei~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i   80 (102)
T d1y8ob1           3 PPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII   80 (102)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEE
T ss_pred             CCCEEEECCCCCCCccEEEEEEEE--eCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEE
Confidence            446899999999999999999999  999999999999999999999999999999999999999997 59999999999


Q ss_pred             eecCcc
Q psy6394         524 EVEDEG  529 (1045)
Q Consensus       524 ~~~~~~  529 (1045)
                      ...++.
T Consensus        81 ~~~~~~   86 (102)
T d1y8ob1          81 VEKEAD   86 (102)
T ss_dssp             ESSGGG
T ss_pred             ecCCcc
Confidence            765443

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=2e-19  Score=158.06  Aligned_cols=77  Identities=19%  Similarity=0.421  Sum_probs=75.0

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      ++|+||+||++|++|+|.+|+  |++||.|++||+||+|||||++++|+||.+|+|.++++++||.|++|++|++|+.+
T Consensus         2 iei~~P~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCS--SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEE--cCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            679999999999999999999  99999999999999999999999999999999999999999999999999999764

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.5e-19  Score=158.50  Aligned_cols=80  Identities=63%  Similarity=1.084  Sum_probs=76.8

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .++|+||+||+++++|+|++|+  +++||.|++||+||+|||||+.++|+||++|+|.++++++|+.+++|++|+.|+.+
T Consensus         4 ~~~~~lP~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~   81 (87)
T d1k8ma_           4 VVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (87)
T ss_dssp             CEEEECCSSCTTSCCEEEEEEC--CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             cEEEECCCCCCCceeEEEEEEE--cCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            5789999999999999999999  99999999999999999999999999999999999999999999999999999865


Q ss_pred             Cc
Q psy6394         527 DE  528 (1045)
Q Consensus       527 ~~  528 (1045)
                      +.
T Consensus        82 ~~   83 (87)
T d1k8ma_          82 AL   83 (87)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.76  E-value=8.8e-20  Score=160.67  Aligned_cols=78  Identities=46%  Similarity=0.749  Sum_probs=74.9

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ++|+||+||++++||+|++|+  |++||.|++||+||++||||++++|+||.+|+|.++++++||.|++|++|+.|+.++
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~G   79 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   79 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECC--CSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCSC
T ss_pred             eEEECCCCCCCceeEEEEEEE--eCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            578999999999999999999  999999999999999999999999999999999999999999999999999997653

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.2e-20  Score=164.48  Aligned_cols=75  Identities=19%  Similarity=0.384  Sum_probs=73.6

Q ss_pred             EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      ++|+||+||++|+||+|++|+  |++||+|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+
T Consensus         3 iei~~P~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~   77 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCC--CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             eEEECCCCCCCccEEEEEEEE--eCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            579999999999999999999  999999999999999999999999999999999999999999999999999997

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.9e-18  Score=152.32  Aligned_cols=79  Identities=28%  Similarity=0.436  Sum_probs=74.5

Q ss_pred             eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      |+++|+||++|+  ++++|++|+  +++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~--v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECC--CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             CCeEEECCCCCC--CeEEEEEEE--eCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            568999999997  489999999  9999999999999999999999999999999999999999999999999999986


Q ss_pred             cCc
Q psy6394         266 EDE  268 (1045)
Q Consensus       266 ~~~  268 (1045)
                      +++
T Consensus        77 eg~   79 (80)
T d1qjoa_          77 EGA   79 (80)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            543

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.74  E-value=4.3e-19  Score=156.93  Aligned_cols=78  Identities=29%  Similarity=0.433  Sum_probs=74.5

Q ss_pred             eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      +++|+||+||+ +.+++|++|+  |++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.+
T Consensus         2 iiei~~P~lg~-~~~~~v~~w~--v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_           2 LVELKVPDIGG-HENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCSS-CSSEEEEEEC--CCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEECCCCCC-CcEEEEEEEE--eCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            57899999995 8999999999  99999999999999999999999999999999999999999999999999999865


Q ss_pred             C
Q psy6394         267 D  267 (1045)
Q Consensus       267 ~  267 (1045)
                      +
T Consensus        79 g   79 (81)
T d1gjxa_          79 G   79 (81)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=1.8e-19  Score=158.62  Aligned_cols=77  Identities=18%  Similarity=0.353  Sum_probs=74.4

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      .++|+||+||++|++|+|++|+  |++||.|++||+|++|||||++++|+||.+|+|.++++++||.+++|++|++|+.
T Consensus         2 ~iei~~P~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_           2 SVDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCEECCCCCSCCSCEECCBCC--CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             CeEEECCCCCCCccEEEEEEEE--eCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            3679999999999999999999  9999999999999999999999999999999999999999999999999999974

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=3e-17  Score=144.63  Aligned_cols=78  Identities=29%  Similarity=0.454  Sum_probs=74.0

Q ss_pred             eeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394         446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  525 (1045)
Q Consensus       446 ~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~  525 (1045)
                      |.++|++|++|+  ++++|++|+  +++||.|++||+|+++||||++++|+||.+|+|.++++++||.|++|++|+.|+.
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~--v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECC--CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             CCeEEECCCCCC--CeEEEEEEE--eCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            468999999997  489999999  9999999999999999999999999999999999999999999999999999986


Q ss_pred             cC
Q psy6394         526 ED  527 (1045)
Q Consensus       526 ~~  527 (1045)
                      ++
T Consensus        77 eg   78 (80)
T d1qjoa_          77 EG   78 (80)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.69  E-value=5.1e-17  Score=142.78  Aligned_cols=73  Identities=27%  Similarity=0.350  Sum_probs=70.1

Q ss_pred             EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394         189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  266 (1045)
Q Consensus       189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~  266 (1045)
                      .|+||+||.   +|+|++|+  |++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|++|++|+.|+..
T Consensus         3 ~i~~P~~g~---~g~i~~~~--v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~   75 (79)
T d1iyua_           3 IIRVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEECCCCSS---EEEEEEEC--CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             EEECCCCCC---CEEEEEEE--ecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecC
Confidence            589999994   89999999  99999999999999999999999999999999999999999999999999999843

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.67  E-value=1.2e-17  Score=147.44  Aligned_cols=78  Identities=29%  Similarity=0.454  Sum_probs=74.4

Q ss_pred             eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .++|+||+|| ++++++|++|+  +++||.|++||+||+|||||++++++||.+|+|.++++++|+.+++|++|+.|+.+
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~--v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEEC--CCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEECCCCC-CCcEEEEEEEE--eCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            4789999999 58999999999  99999999999999999999999999999999999999999999999999999865


Q ss_pred             C
Q psy6394         527 D  527 (1045)
Q Consensus       527 ~  527 (1045)
                      +
T Consensus        79 g   79 (81)
T d1gjxa_          79 G   79 (81)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.64  E-value=3e-16  Score=137.77  Aligned_cols=75  Identities=27%  Similarity=0.317  Sum_probs=71.3

Q ss_pred             EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394         448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED  527 (1045)
Q Consensus       448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~  527 (1045)
                      ..|+||++|+   +|+|++|+  |++||.|++||+|++|||||+.++|+||.+|+|.++++++|+.|++|++|+.|+..+
T Consensus         2 ~~i~~P~~g~---~g~i~~~~--v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSS---EEEEEEEC--CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             CEEECCCCCC---CEEEEEEE--ecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            5689999994   89999999  999999999999999999999999999999999999999999999999999998654

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.43  E-value=1.1e-13  Score=120.71  Aligned_cols=60  Identities=27%  Similarity=0.303  Sum_probs=59.1

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  263 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i  263 (1045)
                      |+|++|+  |++||+|++||+||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|
T Consensus        17 G~v~~~~--V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEEC--CCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             cEEEEEE--cCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            8999999  99999999999999999999999999999999999999999999999999987

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.41  E-value=3.7e-14  Score=107.50  Aligned_cols=41  Identities=44%  Similarity=0.803  Sum_probs=39.3

Q ss_pred             ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394         345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN  385 (1045)
Q Consensus       345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~  385 (1045)
                      +++|||+||+||+|+||||+.|+|||++|||+|+||++|++
T Consensus         1 rv~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           1 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             CcccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            46899999999999999999999999999999999999986

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.33  E-value=9.8e-13  Score=114.51  Aligned_cols=60  Identities=27%  Similarity=0.303  Sum_probs=59.1

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI  523 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i  523 (1045)
                      |+|.+|+  |++||+|++||+|+.+|+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus        17 G~v~~~~--V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEEC--CCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             cEEEEEE--cCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            8899999  99999999999999999999999999999999999999999999999999987

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.2e-13  Score=101.74  Aligned_cols=39  Identities=28%  Similarity=0.652  Sum_probs=37.1

Q ss_pred             cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394         348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS  386 (1045)
Q Consensus       348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~  386 (1045)
                      .||+||+||+|+|||++.|+|||++|||+|+||++|+.+
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~~   39 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK   39 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSCC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHcC
Confidence            379999999999999999999999999999999999874

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=5.5e-12  Score=110.21  Aligned_cols=57  Identities=28%  Similarity=0.383  Sum_probs=55.1

Q ss_pred             EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394         206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  264 (1045)
Q Consensus       206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~  264 (1045)
                      +++  |++||+|++||+||.||+||+.++|.||.+|+|.+|++++|+.|..|++|+.|+
T Consensus        24 ~~~--V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          24 KAF--IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             CCS--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeE--ccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            577  999999999999999999999999999999999999999999999999999884

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.14  E-value=2.2e-12  Score=97.67  Aligned_cols=40  Identities=35%  Similarity=0.552  Sum_probs=38.5

Q ss_pred             CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      +++||+||++|+|+|||+++|+|||++|||+|+||++|++
T Consensus         2 v~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           2 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             cccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            6789999999999999999999999999999999999975

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.8e-11  Score=104.11  Aligned_cols=57  Identities=28%  Similarity=0.383  Sum_probs=55.4

Q ss_pred             EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394         466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE  524 (1045)
Q Consensus       466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~  524 (1045)
                      +++  |++||.|++||+||.+|+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        24 ~~~--V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          24 KAF--IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             CCS--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeE--ccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            688  999999999999999999999999999999999999999999999999999885

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.1e-11  Score=92.56  Aligned_cols=38  Identities=24%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             CCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394         556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN  593 (1045)
Q Consensus       556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~  593 (1045)
                      .||+||++|+|+|||+++|+|||++|||+|+||++|++
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            38999999999999999999999999999999999975

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.0025  Score=59.24  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=39.6

Q ss_pred             EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeC
Q psy6394         202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG  249 (1045)
Q Consensus       202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~  249 (1045)
                      |.|+... ..++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-.
T Consensus        35 G~i~~v~-lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~   81 (127)
T d1onla_          35 GDVVYVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   81 (127)
T ss_dssp             CSEEEEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             ccccccc-CCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhh
Confidence            3444443 2589999999999999999999999999999999998754

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.14  E-value=0.003  Score=59.00  Aligned_cols=55  Identities=22%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEe
Q psy6394         211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEV  265 (1045)
Q Consensus       211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~  265 (1045)
                      .++|+.|++||.++.||+.|+..+|.||.+|+|.++.-...+.   +   +.| ..|+.|..
T Consensus        44 p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~l~~~P~llN~dpy~~gWl~~i~~  105 (131)
T d1hpca_          44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKP  105 (131)
T ss_dssp             CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred             CCCCccccCCCceEEEEeecccccccCCcchhheeehhhhhhCHHHHhCCCCCCcEEEEEEE
Confidence            5789999999999999999999999999999999986543322   1   122 36776653

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.006  Score=56.59  Aligned_cols=45  Identities=20%  Similarity=0.138  Sum_probs=38.6

Q ss_pred             eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      |.|+..-. .++|+.|++|+.++.||+.|+..+|.||++|+|.+++
T Consensus        35 G~i~~v~l-p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN   79 (127)
T d1onla_          35 GDVVYVEL-PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN   79 (127)
T ss_dssp             CSEEEEEC-BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred             cccccccC-CCCCchhcCCCceEEEeeccceeeccCCccceEEEEh
Confidence            34544441 4899999999999999999999999999999999986

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=95.59  E-value=0.0072  Score=56.36  Aligned_cols=44  Identities=23%  Similarity=0.144  Sum_probs=37.9

Q ss_pred             EEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394         463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY  507 (1045)
Q Consensus       463 ~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~  507 (1045)
                      .|+..-. .++|+.|++||.++.||+.|+..++.||++|+|.+++
T Consensus        37 ~i~~v~l-p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          37 EVVFVEL-PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             SEEEEEC-CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             hheeecC-CCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            3444430 4789999999999999999999999999999999886

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.17  E-value=0.077  Score=53.01  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=35.4

Q ss_pred             EEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394         224 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV  265 (1045)
Q Consensus       224 ~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~  265 (1045)
                      ..|+..+ .++|.|+.+|+|.+++|++|+.|+.|++|+.|+.
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~   48 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   48 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEeh
Confidence            3456543 4689999999999999999999999999999974

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.66  E-value=0.11  Score=51.91  Aligned_cols=42  Identities=17%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             eEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394         484 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE  526 (1045)
Q Consensus       484 ~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~  526 (1045)
                      .+|+..+ .++|.|+++|+|.+++|++|+.|+.|++|+.|+..
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   49 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   49 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEehH
Confidence            3455533 46799999999999999999999999999999753