Psyllid ID: psy6404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MSTAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERIDTNMAFVEVAQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHcHHHHcHccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHcHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEccccccEcccHHHHcccHHHHHHHHHHccHHHHHHHHHccEcccccccccccccccHHHHHHHHHHHHHHccHccHHHHHHHHHHcccccEEccccccEcccHHHHcccHHHHHHHHHHccHHHHHHHHHccEccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccEEEccc
Coil and Loop (DISEMBL)
MSTAEEAVLETAVEVLEAVPPGVLALVYRLQIStslrsfttpcfsfkctladgdcdmrfvFCACSICYilddwsgmdRARCLEFIFRSlsydgafgqgpcleshggstyCALASLALMNKldtlrptqASLYLDLVKSFLFYSPQIESLKRWLIFRqrsgfqgrpnkpvdtcytFWIGASLSILNAATWIDEERLLLSVLDTqhmtgglskwsdTQADILHTYLgeffvrpriIKTQIESLKRWLIFRqrsgfqgrpnkpvdtcytFWIGASLSilnsatwidEERLLLSVLDTqhmtgglskwsdTQADILHTYLEAMSHASRNKLkernfqlpldkkdiapldeleridtNMAFVEVAQ
Flexible Loop (DISEMBL)
MSTAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRsgfqgrpnkpVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYlgeffvrprIIKTQIESLKRWLIFRqrsgfqgrpnkpVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLkernfqlpldkkdiapldeleridTNMAFVEVAQ
Low Complexity Region (SEG)
MStaeeavletavevleavPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERIDTNMAFVEVAQ
Disordered region (IsUnstruct)
*******VLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAM******************************************
Disordered Region (DISOPRED)
*STAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERIDTNMAFVEV**
Disordered Region (DISEMBL)
MSTAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERIDTNMAFVEVAQ
Disordered Region (DISPRO)
****EEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERIDTNMAFVEV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERIDTNMAFVEVAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q5EAD5	377	Geranylgeranyl transferas	yes	N/A	0.512	0.490	0.426	9e-43
P53609	377	Geranylgeranyl transferas	yes	N/A	0.512	0.490	0.426	1e-42
Q8BUY9	377	Geranylgeranyl transferas	yes	N/A	0.448	0.429	0.45	2e-42
P53610	377	Geranylgeranyl transferas	yes	N/A	0.448	0.429	0.45	2e-42
Q55DA3	352	Geranylgeranyl transferas	yes	N/A	0.426	0.437	0.416	4e-32
P32434	355	Geranylgeranyl transferas	yes	N/A	0.454	0.461	0.393	1e-20
P20133	325	Geranylgeranyl transferas	yes	N/A	0.432	0.48	0.323	6e-20
Q55D51	500	Protein farnesyltransfera	no	N/A	0.518	0.374	0.282	3e-18
Q08603	331	Geranylgeranyl transferas	no	N/A	0.423	0.462	0.318	4e-18
P53612	339	Geranylgeranyl transferas	no	N/A	0.423	0.451	0.318	4e-18

>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1

 Score =  174 bits (441), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 122/204 (59%), Gaps = 19/204 (9%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCL 82
           L+ V +      LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + +
Sbjct: 139 LSRVNKEACLAGLRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197

Query: 83  EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
            +I RS+SYD    QG  LESHGGST+C +ASL LM KL+                 +F 
Sbjct: 198 NYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE----------------VFS 241

Query: 143 SPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT 202
             ++  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301

Query: 203 Q-HMTGGLSKWSDTQADILHTYLG 225
           Q  + GG +KW D+  D LH Y G
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYFG 325

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. Acts on the Rac1, Rac2, Rap1A and Rap1B proteins. The beta subunit is responsible for peptide-binding.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 9

>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 122/204 (59%), Gaps = 19/204 (9%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCL 82
           L+ V +      LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + +
Sbjct: 139 LSRVNKEACLAGLRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197

Query: 83  EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
            +I RS+SYD    QG  LESHGGST+C +ASL LM KL+                 +F 
Sbjct: 198 TYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE----------------VFS 241

Query: 143 SPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT 202
             ++  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301

Query: 203 Q-HMTGGLSKWSDTQADILHTYLG 225
           Q  + GG +KW D+  D LH Y G
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYFG 325

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. Acts on the Rac1, Rac2, Rap1A and Rap1B proteins. The beta subunit is responsible for peptide-binding.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=2 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 18/180 (10%)

Query: 48  CTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106
           C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD    QG  LESHGG
Sbjct: 162 CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221

Query: 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPN 166
           ST+C +ASL LM KL+                 +F   ++  +KRW I RQ++G+ GRPN
Sbjct: 222 STFCGIASLCLMGKLEE----------------VFSEKELNRIKRWCIMRQQNGYHGRPN 265

Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
           KPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW D+  D LH Y G
Sbjct: 266 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 325

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. Acts on the Rac1, Rac2, Rap1A and Rap1B proteins. The beta subunit is responsible for peptide-binding.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 18/180 (10%)

Query: 48  CTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106
           C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD    QG  LESHGG
Sbjct: 162 CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221

Query: 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPN 166
           ST+C +ASL LM KL+                 +F   ++  +KRW I RQ++G+ GRPN
Sbjct: 222 STFCGIASLCLMGKLEE----------------VFSEKELNRIKRWCIMRQQNGYHGRPN 265

Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
           KPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW D+  D LH Y G
Sbjct: 266 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 325

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. Acts on the Rac1, Rac2, Rap1A and Rap1B proteins. The beta subunit is responsible for peptide-binding.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 19/173 (10%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           GD D+R +F AC+I +ILDDWS +++   +++I   LSY+ AFGQ P  E+HGG TYCA+
Sbjct: 162 GDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAI 221

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTC 172
           ASL+L+ +LD L P +                  E L  WL+ +Q +GF GR NK  DTC
Sbjct: 222 ASLSLLGRLDVLEPFK------------------EQLTFWLVKKQITGFCGRTNKDPDTC 263

Query: 173 YTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYL 224
           Y FWIGASL +++    ID   +   +   QH   GG++K      D++H+YL
Sbjct: 264 YAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAIGGVAKEPGQLPDVMHSYL 316

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwg2 PE=3 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 101/183 (55%), Gaps = 19/183 (10%)

Query: 54  DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALA 113
           D DMR ++ A +I  +LD +S  D    +++I     Y+G F   P  E+H G+T+CALA
Sbjct: 146 DQDMRQLYMATTIASLLD-FSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALA 204

Query: 114 SLALMNKL---DTLRPTQASLYL-DLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNK 167
           S +L+ K+    +L  +  S  L D V       P++E L RWL  RQ S  G  GR NK
Sbjct: 205 SWSLILKMIPNSSLNTSNQSYNLMDCV-------PKVERLIRWLASRQLSSGGLNGRTNK 257

Query: 168 PVDTCYTFWIGASLSILNAATWIDE---ERLLLSVLDTQHMTGGLSKWSDTQADILHTYL 224
            VDTCY +W+ +SL +L+A  +ID    E+ LL  L  QH  GG SK      D+LH+ L
Sbjct: 258 DVDTCYAYWVLSSLKLLDALPFIDGGELEKYLL--LHAQHALGGFSKTPGEFPDVLHSAL 315

Query: 225 GEF 227
           G +
Sbjct: 316 GLY 318

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal C-A-A-L where A is an aliphatic amino acid. In particular it modifies the GTP-binding component of the 1,3-beta-D-glucan synthase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 20/176 (11%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RFV+ A S   IL + +       ++F+ +  ++DG FG  P  ESH    +  L
Sbjct: 132 GEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCL 191

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
            +LA+ NKLD L                    Q+E +  WL  RQ    G  GRP+K  D
Sbjct: 192 GALAIANKLDMLS-----------------DDQLEEIGWWLCERQLPEGGLNGRPSKLPD 234

Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
            CY++W+ +SL+I+    WI+ E+L   +L  Q    GG+S   + + D+ HT  G
Sbjct: 235 VCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFG 290

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 43/230 (18%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D R  +CA ++  +L+  +       ++F+    +Y+G FG  P  E+HGG T+C++
Sbjct: 195 GEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSV 254

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVD 170
           A+L+++N L  +                     + SL RW+ +RQ +  GF+GR NK VD
Sbjct: 255 AALSILNSLHKI--------------------DMNSLHRWITYRQSNDGGFEGRTNKLVD 294

Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVR 230
           TCY++W GA   I+ +           +    Q    G  K  D Q + L     +  ++
Sbjct: 295 TCYSYWQGAVYIIIQS---------YFNYYKKQQQDDGDGKEGDQQEEGL--LFNQAKLQ 343

Query: 231 PRIIKTQIESLKRWLIFRQRSGFQGRPNKPVD---TCYTFWIGASLSILN 277
             +I+   +S K++      SGF   P++  D   TCY    G SLS  N
Sbjct: 344 EYVIRFCQQSDKKY------SGFSDHPHRGKDYYHTCYGLS-GISLSQYN 386

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RF FCA +   +L     ++  + +EF+   +++DG FG  P  ESH G  YC  
Sbjct: 139 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
             LA+ ++L  +                      + L  WL  RQ    G  GRP K  D
Sbjct: 199 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 238

Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
            CY++W+ ASL I+    WID E+L   +L  Q   TGG +       D  HT  G
Sbjct: 239 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 294

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RF FCA +   +L     ++  + +EF+   +++DG FG  P  ESH G  YC  
Sbjct: 147 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 206

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
             LA+ ++L  +                      + L  WL  RQ    G  GRP K  D
Sbjct: 207 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 246

Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
            CY++W+ ASL I+    WID E+L   +L  Q   TGG +       D  HT  G
Sbjct: 247 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 302

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
47212725	611	unnamed protein product [Tetraodon nigro	0.750	0.443	0.404	6e-58
91076624	313	PREDICTED: similar to protein geranylger	0.512	0.591	0.5	5e-47
340380508	357	PREDICTED: geranylgeranyl transferase ty	0.506	0.512	0.470	9e-47
291225759	357	PREDICTED: geranylgeranyltransferase typ	0.512	0.518	0.490	2e-46
405960651	351	Geranylgeranyl transferase type-1 subuni	0.509	0.524	0.452	1e-44
156356093	361	predicted protein [Nematostella vectensi	0.515	0.515	0.472	2e-44
449280191	332	Geranylgeranyl transferase type-1 subuni	0.515	0.560	0.433	3e-44
345487594	365	PREDICTED: geranylgeranyl transferase ty	0.515	0.509	0.448	6e-44
300068969	349	geranylgeranyltransferase type I beta su	0.512	0.530	0.463	7e-44
357621766	351	geranylgeranyltransferase type I beta su	0.512	0.527	0.477	2e-43

>gi|47212725|emb|CAF90463.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 173/294 (58%), Gaps = 23/294 (7%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ V +      LR+      SF       + D+RF++CA SICY+LDDWSGMD  + +E
Sbjct: 134 LSRVNKQACLAGLRALQMEDGSFYALPEGSENDIRFIYCAASICYMLDDWSGMDTRKAIE 193

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I  SLSYDG FGQG   ESHGG TYCA+ASL LM +LD     +               
Sbjct: 194 YIRGSLSYDGGFGQGAGRESHGGWTYCAIASLCLMGRLDETLSRR--------------- 238

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            +++ ++RW I RQ+SGF GRPNKPVDTCY+FW+GA+L +L    + +  +    +L TQ
Sbjct: 239 -ELDRIRRWCIMRQQSGFHGRPNKPVDTCYSFWVGATLELLGVFRYTNFNKNRSFILSTQ 297

Query: 204 -HMTGGLSKWSDTQ-ADILHTYLGEFFVRPRIIKT----QIESLKRWLIFRQRSGFQGRP 257
             + GG +KW D+      +  +    +  R+ +T    +++ ++RW I RQ+SGF GRP
Sbjct: 298 DRLVGGFAKWPDSHPGGWTYCAIASLCLMGRLDETLSRRELDRIRRWCIMRQQSGFHGRP 357

Query: 258 NKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQAD 310
           NKPVDTCY+FW+GA+L +L    + +  +    +L TQ  + GG +KW D+  +
Sbjct: 358 NKPVDTCYSFWVGATLELLGVFRYTNFNKNRSFILSTQDRLVGGFAKWPDSHPE 411

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91076624|ref|XP_969682.1| PREDICTED: similar to protein geranylgeranyltransferase type I, beta subunit [Tribolium castaneum] gi|270002633|gb|EEZ99080.1| hypothetical protein TcasGA2_TC004960 [Tribolium castaneum]

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 123/202 (60%), Gaps = 17/202 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L  V+R  I  SLRS   P   F       + DMRFVFCA  ICYILDD+SGMD  R ++
Sbjct: 90  LERVHRKSIIKSLRSLQLPNGCFMGAKDGTEHDMRFVFCAACICYILDDFSGMDIDRTVD 149

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           FI +S+SYD    QGP LESH GST+CA+A+LAL  +L  L P                 
Sbjct: 150 FILKSISYDFGIAQGPQLESHSGSTFCAVATLALTKQLHRLSP----------------- 192

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
           PQ+E LKRWL+ R  +GF GRPNKP DTCY+FW G +L ILNA  +I+E+     +L TQ
Sbjct: 193 PQLEGLKRWLLNRFENGFTGRPNKPSDTCYSFWTGGALKILNAYQFIEEKDNDQFILVTQ 252

Query: 204 HMTGGLSKWSDTQADILHTYLG 225
              GG SKW +T  D +HTYLG
Sbjct: 253 DRNGGFSKWVNTAPDAMHTYLG 274

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340380508|ref|XP_003388764.1| PREDICTED: geranylgeranyl transferase type-1 subunit beta-like [Amphimedon queenslandica]

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 132/206 (64%), Gaps = 23/206 (11%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ + +  + T +++   P  SF  T+   + DMRFV+CAC + YIL+DWS +D +   +
Sbjct: 135 LSRINKPAVLTGIKALQQPDGSFCSTVEQSESDMRFVYCACCVSYILNDWSVVDVSLTAD 194

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLD---TLRPTQASLYLDLVKSFL 140
           +I +SL+Y+  FGQGP LESHGGSTYCA+ASL LMNKL+   TLR               
Sbjct: 195 YIKKSLAYNFGFGQGPSLESHGGSTYCAVASLVLMNKLESTLTLR--------------- 239

Query: 141 FYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVL 200
               +IE +K+W I RQ +GFQGRPNKP DTCY+FWIGA+L +L A+ W+D+E  +  +L
Sbjct: 240 ----EIERIKKWCIMRQLTGFQGRPNKPADTCYSFWIGATLEMLGASDWVDKELNVQFIL 295

Query: 201 DTQ-HMTGGLSKWSDTQADILHTYLG 225
            T+   TGG SKW     D LH+YLG
Sbjct: 296 STEGEYTGGFSKWPKCHPDPLHSYLG 321

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|291225759|ref|XP_002732865.1| PREDICTED: geranylgeranyltransferase type I beta-subunit-like [Saccoglossus kowalevskii]

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/204 (49%), Positives = 129/204 (63%), Gaps = 19/204 (9%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCL 82
           L+ + +  I ++LR+   P  SF C + +G + DMRFV+CA  ICY+LDDWSGMD     
Sbjct: 130 LSRLNKAAILSALRTLQLPDGSF-CAIPEGSENDMRFVYCASCICYMLDDWSGMDVDMAA 188

Query: 83  EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
            FI +SLSY+    QGP LE HGG T+C +ASL LM +LD+                +F 
Sbjct: 189 TFINQSLSYEYGIAQGPGLEGHGGPTFCGIASLVLMQQLDS----------------IFT 232

Query: 143 SPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT 202
           + QIE +KRW IFRQ+SGFQGRPNKPVDTCY+FW+GA+L +L A   ID       +L T
Sbjct: 233 NKQIERIKRWCIFRQQSGFQGRPNKPVDTCYSFWVGATLKLLGAFEQIDYSSNRNYILST 292

Query: 203 Q-HMTGGLSKWSDTQADILHTYLG 225
           Q ++TGG SKW D   D LH+Y G
Sbjct: 293 QDNVTGGFSKWPDCHPDALHSYFG 316

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|405960651|gb|EKC26553.1| Geranylgeranyl transferase type-1 subunit beta [Crassostrea gigas]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 17/201 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ V +  I T+LR+      SF C     + DMRFV+CA  ICY+L+DWSGM+  + ++
Sbjct: 127 LSGVNKSAILTALRNLQQEDGSFCCVPEGSENDMRFVYCAACICYMLNDWSGMNVEKAVQ 186

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           F+ +S SY+G  GQGP LE+HGGST+CA+A+L+LMNKL T                 F  
Sbjct: 187 FVQKSQSYEGGIGQGPGLEAHGGSTFCAVAALSLMNKLKT----------------SFSE 230

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            +++ L+RW + RQ+SGFQGRPNKP DTCY+FW+GA+L +++    I+ E     +++TQ
Sbjct: 231 KKLKQLQRWCVCRQQSGFQGRPNKPTDTCYSFWVGATLKLIDTYHLINSEFNRGFLMETQ 290

Query: 204 -HMTGGLSKWSDTQADILHTY 223
             +TGG SKW D   D LH Y
Sbjct: 291 GSITGGFSKWPDHTPDALHAY 311

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|156356093|ref|XP_001623765.1| predicted protein [Nematostella vectensis] gi|156210494|gb|EDO31665.1| predicted protein [Nematostella vectensis]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 123/203 (60%), Gaps = 17/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ + R  I   LR       SF  T    + DMRF++CAC I +IL+DWSG++  + ++
Sbjct: 137 LSRINRPAIIEGLRHLQLEDGSFCPTYLGSENDMRFIYCACCISFILNDWSGINIEKAVQ 196

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I  S SYD    QGP LESHGGST+CA+ASL+LMN+LD                 +F  
Sbjct: 197 YIRNSQSYDYGIAQGPHLESHGGSTFCAIASLSLMNQLDK----------------VFTK 240

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            Q+E L RW IFRQ+SGF GRPNKPVDTCY FW+GASL ILN+   ID       ++ TQ
Sbjct: 241 SQLEKLIRWCIFRQKSGFHGRPNKPVDTCYAFWVGASLEILNSFKMIDFTANRDYLMQTQ 300

Query: 204 -HMTGGLSKWSDTQADILHTYLG 225
            ++TGG SKW     D LH+Y G
Sbjct: 301 ANVTGGFSKWPGIHPDALHSYFG 323

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449280191|gb|EMC87541.1| Geranylgeranyl transferase type-1 subunit beta, partial [Columba livia]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 124/203 (61%), Gaps = 17/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ + +  I   LR+      SF   L   + DMRFV+CA  +CY+LD+WSGMD  + ++
Sbjct: 93  LSRINKDAILAGLRALQLEDGSFCAVLEGSENDMRFVYCASCVCYMLDNWSGMDMKKAID 152

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I RS+SYD    QGP LESHGGST+C +ASL LM KL+                 +F  
Sbjct: 153 YIRRSMSYDNGLAQGPGLESHGGSTFCGIASLCLMGKLEE----------------VFSE 196

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            +++ ++RW I RQ++G+ GRPNKPVDTCY+FW+GA+L +LN   + D E+    +L TQ
Sbjct: 197 KELDRIRRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLNIFQYTDFEKNRNYILSTQ 256

Query: 204 -HMTGGLSKWSDTQADILHTYLG 225
             + GG +KW D+  D LH Y G
Sbjct: 257 DRLVGGFAKWPDSHPDALHAYFG 279

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345487594|ref|XP_001599300.2| PREDICTED: geranylgeranyl transferase type-1 subunit beta-like [Nasonia vitripennis]

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 126/203 (62%), Gaps = 17/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ V +  I   +R+   P  SF   +   + DMRFV+CAC +  ILDDWSGM++A+ ++
Sbjct: 140 LSSVDKESILEGMRACQNPDGSFTAMVTGCESDMRFVYCACCVSAILDDWSGMNKAKAID 199

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I +S+SYDGA GQGP LESHGGST+CA+ASL LMN+L+                 +   
Sbjct: 200 YIVKSISYDGAIGQGPGLESHGGSTFCAVASLYLMNELNN----------------VLTE 243

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            Q++ LKRW + RQ  GF GRP KP D+CY+FWIGA+L +L  +   D +     VLDTQ
Sbjct: 244 KQLDRLKRWCLMRQDGGFHGRPGKPSDSCYSFWIGATLQLLGVSELSDCQENRAFVLDTQ 303

Query: 204 H-MTGGLSKWSDTQADILHTYLG 225
           + + GG  K+ + + D LH YLG
Sbjct: 304 NTIMGGFGKYDNERPDPLHAYLG 326

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|300068969|ref|NP_001177770.1| geranylgeranyltransferase type I beta subunit [Bombyx mori] gi|298354673|dbj|BAJ09607.1| geranylgeranyltransferase type I beta subunit [Bombyx mori]

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 124/203 (61%), Gaps = 18/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ + R  +   +++  T   +F  TL+  + DMRFV+CA  I YIL+DWSG D  +  +
Sbjct: 126 LSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAACISYILNDWSGFDIEKATD 185

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           ++ +S+ YD    Q P LESHGG+T+CALA+LAL ++LD L                   
Sbjct: 186 YVIKSIGYDYGIAQCPELESHGGTTFCALATLALTDQLDKLS-----------------E 228

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            QI+ LKRWL++RQ  GFQGRPNKPVDTCY+FW+GASL ILNA    +       V +TQ
Sbjct: 229 AQIDGLKRWLVYRQIDGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYVYETQ 288

Query: 204 HM-TGGLSKWSDTQADILHTYLG 225
            M  GG SKW DT  D +HTYLG
Sbjct: 289 DMVVGGFSKWPDTCTDPMHTYLG 311

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621766|gb|EHJ73489.1| geranylgeranyltransferase type I beta subunit [Danaus plexippus]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 123/203 (60%), Gaps = 18/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ V R  +   +++      +F  TL+  + DMRFV+CA  I YIL+DWSG D  R  +
Sbjct: 126 LSRVNRRALVEGVKALQREEGNFSATLSGCESDMRFVYCAACISYILNDWSGFDVKRATD 185

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I  S+ YD    Q P LESHGG+T+CALA+L+L N+LD L                   
Sbjct: 186 YIIDSIGYDYGIAQCPELESHGGTTFCALATLSLTNQLDKLTI----------------- 228

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
            QIE LKRWL+FRQ  GFQGRPNKPVDTCY+FW+GASL IL+A    + E     V +TQ
Sbjct: 229 EQIEGLKRWLLFRQIDGFQGRPNKPVDTCYSFWVGASLKILDALHLSNFESNKSYVYETQ 288

Query: 204 H-MTGGLSKWSDTQADILHTYLG 225
             + GG SKW DT  D +HTYLG
Sbjct: 289 DCVVGGFSKWPDTCTDPMHTYLG 311

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
ZFIN|ZDB-GENE-050913-85	355	pggt1b "protein geranylgeranyl	0.515	0.523	0.443	2.2e-41
UNIPROTKB|F1NE58	332	PGGT1B "Uncharacterized protei	0.515	0.560	0.423	9.6e-41
UNIPROTKB|E2QZU5	377	PGGT1B "Uncharacterized protei	0.479	0.458	0.442	4.2e-40
RGD|621754	377	Pggt1b "protein geranylgeranyl	0.479	0.458	0.442	5.3e-40
UNIPROTKB|P53610	377	Pggt1b "Geranylgeranyl transfe	0.479	0.458	0.442	5.3e-40
MGI|MGI:1917514	377	Pggt1b "protein geranylgeranyl	0.479	0.458	0.442	5.3e-40
UNIPROTKB|Q5EAD5	377	PGGT1B "Geranylgeranyl transfe	0.479	0.458	0.442	5.3e-40
UNIPROTKB|F1RLE8	318	PGGT1B "Uncharacterized protei	0.479	0.544	0.442	5.3e-40
UNIPROTKB|P53609	377	PGGT1B "Geranylgeranyl transfe	0.479	0.458	0.442	6.8e-40
FB|FBgn0015000	395	betaggt-I "beta subunit of typ	0.235	0.215	0.569	3.1e-38

ZFIN|ZDB-GENE-050913-85 pggt1b "protein geranylgeranyltransferase type I, beta subunit" [Danio rerio (taxid:7955)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 90/203 (44%), Positives = 123/203 (60%)

Query:    24 LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
             L  V R    + LR+      SF       + DMRFV+CA  IC++LDDWSGMDR + ++
Sbjct:   128 LGRVDRAACVSGLRALQLEDGSFYAVPEGSENDMRFVYCAACICFMLDDWSGMDRQKTID 187

Query:    84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
             +I RS S+D   GQG  LESHGGST+CA+ASL +M KL  +                F  
Sbjct:   188 YIRRSTSFDFGIGQGAGLESHGGSTFCAVASLCMMGKLREV----------------FSE 231

Query:   144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
              ++  L+RW + RQ++GFQGRPNKPVDTCY+FW+GA+L +L+   + + E+    +L TQ
Sbjct:   232 RELGRLRRWCVLRQQNGFQGRPNKPVDTCYSFWVGATLQLLDVFQYTNFEKNRNYILSTQ 291

Query:   204 -HMTGGLSKWSDTQADILHTYLG 225
               + GG +KW D+  D LHTY G
Sbjct:   292 DRLVGGFAKWPDSHPDPLHTYFG 314

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1NE58 PGGT1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 86/203 (42%), Positives = 121/203 (59%)

Query:    24 LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
             L+ V +  +   LR+      SF   L   + DMRFV+CA  ICY+LD+WSGMD  + ++
Sbjct:    93 LSRVNKDALLAGLRALQLEDGSFCAVLEGSENDMRFVYCASCICYMLDNWSGMDMKKAID 152

Query:    84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
             +I RS+SYD    QG  LESHGGST+C +ASL LM KL+ +                F  
Sbjct:   153 YIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSE 196

Query:   144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ 203
              ++  + RW + RQ++G+ GRPNKPVDTCY+FW+GA+L +LN   + + E+    +L TQ
Sbjct:   197 KELSRIGRWCVMRQQNGYHGRPNKPVDTCYSFWVGATLKLLNLFQYTNFEKNRNYILSTQ 256

Query:   204 -HMTGGLSKWSDTQADILHTYLG 225
               + GG +KW D+  D LH Y G
Sbjct:   257 DRLVGGFAKWPDSHPDALHAYFG 279

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E2QZU5 PGGT1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 85/192 (44%), Positives = 119/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:   151 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNG 209

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM+KL+ +                F   ++  +KRW I
Sbjct:   210 LAQGAGLESHGGSTFCGIASLCLMDKLEEV----------------FSEKELNRIKRWCI 253

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   254 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 313

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   314 DSHPDALHAYFG 325

GO:0003824 "catalytic activity" evidence=IEA

RGD|621754 Pggt1b "protein geranylgeranyltransferase type I, beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/192 (44%), Positives = 118/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:   151 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNG 209

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM KL+ +                F   ++  +KRW I
Sbjct:   210 LAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCI 253

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   254 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 313

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   314 DSHPDALHAYFG 325

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=IDA;TAS

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0018344 "protein geranylgeranylation" evidence=TAS

GO:0034097 "response to cytokine stimulus" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051771 "negative regulation of nitric-oxide synthase biosynthetic process" evidence=IMP

GO:0008144 "drug binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0019840 "isoprenoid binding" evidence=IDA

GO:0042277 "peptide binding" evidence=IDA

UNIPROTKB|P53610 Pggt1b "Geranylgeranyl transferase type-1 subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/192 (44%), Positives = 118/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:   151 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNG 209

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM KL+ +                F   ++  +KRW I
Sbjct:   210 LAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCI 253

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   254 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 313

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   314 DSHPDALHAYFG 325

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1917514 Pggt1b "protein geranylgeranyltransferase type I, beta subunit" [Mus musculus (taxid:10090)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/192 (44%), Positives = 118/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:   151 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNG 209

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM KL+ +                F   ++  +KRW I
Sbjct:   210 LAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCI 253

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   254 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 313

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   314 DSHPDALHAYFG 325

GO:0003824 "catalytic activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=ISO

GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=ISO

GO:0008144 "drug binding" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0019840 "isoprenoid binding" evidence=ISO

GO:0034097 "response to cytokine stimulus" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0045787 "positive regulation of cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051771 "negative regulation of nitric-oxide synthase biosynthetic process" evidence=ISO

UNIPROTKB|Q5EAD5 PGGT1B "Geranylgeranyl transferase type-1 subunit beta" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/192 (44%), Positives = 118/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:   151 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNG 209

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM KL+ +                F   ++  +KRW I
Sbjct:   210 LAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCI 253

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   254 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 313

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   314 DSHPDALHAYFG 325

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RLE8 PGGT1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/192 (44%), Positives = 118/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:    92 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNG 150

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM KL+ +                F   ++  +KRW I
Sbjct:   151 LAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCI 194

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   195 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 254

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   255 DSHPDALHAYFG 266

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|P53609 PGGT1B "Geranylgeranyl transferase type-1 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 85/192 (44%), Positives = 118/192 (61%)

Query:    36 LRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGA 94
             LR+      SF C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD  
Sbjct:   151 LRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNG 209

Query:    95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
               QG  LESHGGST+C +ASL LM KL+ +                F   ++  +KRW I
Sbjct:   210 LAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCI 253

Query:   155 FRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWS 213
              RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW 
Sbjct:   254 MRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWP 313

Query:   214 DTQADILHTYLG 225
             D+  D LH Y G
Sbjct:   314 DSHPDALHAYFG 325

GO:0046872 "metal ion binding" evidence=IEA

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=IEA

GO:0005953 "CAAX-protein geranylgeranyltransferase complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0051771 "negative regulation of nitric-oxide synthase biosynthetic process" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

FB|FBgn0015000 betaggt-I "beta subunit of type I geranylgeranyl transferase" [Drosophila melanogaster (taxid:7227)]

 Score = 250 (93.1 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
 Identities = 49/86 (56%), Positives = 56/86 (65%)

Query:   232 RIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSV 291
             R+  T +E +KRWLIFRQ  GFQGRPNKPVDTCY+FWIGASL ILN     D  R    +
Sbjct:   229 RLDATTVERMKRWLIFRQMDGFQGRPNKPVDTCYSFWIGASLCILNGFELTDYARNREFI 288

Query:   292 LDTQH-MTGGLSKWSDTQADILHTYL 316
             L TQ  + GG +KW     D  HTYL
Sbjct:   289 LSTQDKLIGGFAKWPQATPDPFHTYL 314

GO:0004661 "protein geranylgeranyltransferase activity" evidence=ISS

GO:0007265 "Ras protein signal transduction" evidence=ISS

GO:0004662 "CAAX-protein geranylgeranyltransferase activity" evidence=NAS

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	361
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	2e-67
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	7e-65
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	2e-37
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	6e-37
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-36
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	1e-32
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	2e-27
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	1e-26
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	2e-24
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	5e-22
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	1e-20
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	3e-20
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	2e-17
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	2e-15
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	6e-15
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	4e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	3e-08
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	4e-08
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	3e-06
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	5e-04
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	0.004

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  214 bits (548), Expect = 2e-67
 Identities = 92/188 (48%), Positives = 119/188 (63%), Gaps = 24/188 (12%)

Query: 45  SFKCTLAD--GDCDMRFVFCACSICYILDDWS--GMDRARCLEFIFRSLSYDGAFGQGPC 100
           SF   L    G+ DMRF +CA +ICY+LDDWS   +D+ + +++I  S SYDG FGQGP 
Sbjct: 130 SFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPG 189

Query: 101 LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS- 159
           LESHGGST+CA+ASL+L+ KL+ L                     +E LKRWL+ RQ S 
Sbjct: 190 LESHGGSTFCAIASLSLLGKLEELS-----------------EKFLERLKRWLVHRQVSG 232

Query: 160 -GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQA 217
            GF GRPNKP DTCY+FW+GASL +L+A   ID E+    +L TQ  + GG +K  D+  
Sbjct: 233 TGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHP 292

Query: 218 DILHTYLG 225
           D LH+YLG
Sbjct: 293 DPLHSYLG 300

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  207 bits (528), Expect = 7e-65
 Identities = 77/185 (41%), Positives = 101/185 (54%), Gaps = 25/185 (13%)

Query: 45  SFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESH 104
           SF+  L  G+ D RFV+CA SI  +L+  + +D+ + +++I    +YDG FG  P  ESH
Sbjct: 116 SFRGDL-GGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESH 174

Query: 105 GGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---RSGF 161
           GG T+CA+ASLAL+ +LD                        E L RWL+ RQ     GF
Sbjct: 175 GGYTFCAVASLALLGRLD--------------------LIDKERLLRWLVERQLASGGGF 214

Query: 162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADIL 220
            GRPNK VDTCY+FW+GASL IL     ID+E+L   +L  Q    GG S       D+ 
Sbjct: 215 NGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLY 274

Query: 221 HTYLG 225
           HTY G
Sbjct: 275 HTYYG 279

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  137 bits (346), Expect = 2e-37
 Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 23/207 (11%)

Query: 22  GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARC 81
            VL+ + R  +++ +     P  SF+ +  +G+ D RF++ A SI  +L D         
Sbjct: 121 DVLSRIDRDSLASFISGLKNPDGSFR-SDLEGEVDTRFLYIALSILSLLGDLDKELFEGA 179

Query: 82  LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF 141
           ++++ +  +Y+G FG  P  E+H G T+CALA+LAL+ KLD L                 
Sbjct: 180 VDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLS---------------- 223

Query: 142 YSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSV 199
               +E L RWL  RQ S  G  GR NK VDTCY+FW+ +SL+IL    +I+ E L   +
Sbjct: 224 ---DVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYI 280

Query: 200 LD-TQHMTGGLSKWSDTQADILHTYLG 225
           LD  Q  +GG S     + D+ HT  G
Sbjct: 281 LDCQQETSGGFSDRPGEEPDVYHTCFG 307

Length = 342

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  134 bits (339), Expect = 6e-37
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 23/176 (13%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RF +CA     +L     +D  + ++++    ++DG FG  P  ESH G  +C +
Sbjct: 125 GEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCV 184

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVD 170
            +LA++  LD +                      + L  WL  RQ    G  GRP K  D
Sbjct: 185 GALAILGSLDLI--------------------DRDRLGWWLCERQLPSGGLNGRPEKLPD 224

Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLG 225
            CY++W+ +SL I+    WI++ +L   +L  Q    GG +       D+ HT+ G
Sbjct: 225 VCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFG 280

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  133 bits (337), Expect = 1e-36
 Identities = 84/266 (31%), Positives = 125/266 (46%), Gaps = 29/266 (10%)

Query: 61  FCACSICYILDDW-SGMDRARCLEFIFRSLSY-DGAFGQGPCLESHGGSTYCALASLALM 118
           +   S+  +L +     ++   ++FI+      DG FG GP  + H  STY A+ SLA++
Sbjct: 32  WILSSLD-LLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAIL 90

Query: 119 NKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFW 176
              D L        +D            E + ++L   Q     F+G     VDT + + 
Sbjct: 91  GD-DALSR------ID-----------REKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYC 132

Query: 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRII 234
             + LS+LN  T ID+E+L+  +L  Q+  GG       ++   +T+  +    +  R+ 
Sbjct: 133 ALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLD 192

Query: 235 KTQIESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSV 291
               E L RWL+ RQ     GF GRPNK VDTCY+FW+GASL IL     ID+E+L   +
Sbjct: 193 LIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYI 252

Query: 292 LDTQ-HMTGGLSKWSDTQADILHTYL 316
           L  Q    GG S       D+ HTY 
Sbjct: 253 LSCQQSEVGGFSDKPGKPPDLYHTYY 278

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  123 bits (310), Expect = 1e-32
 Identities = 68/188 (36%), Positives = 89/188 (47%), Gaps = 37/188 (19%)

Query: 52  DGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCA 111
            G+ D+R  +CA S+  +L+  +        E+I    +Y+G FG  P  E+HGG T+CA
Sbjct: 122 GGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCA 181

Query: 112 LASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---RSGFQGRPNKP 168
           LA+LA++ K D          LD           +ESL RWL+ RQ     GFQGR NK 
Sbjct: 182 LAALAILGKPD---------KLD-----------LESLLRWLVARQMRFEGGFQGRTNKL 221

Query: 169 VDTCYTFWIGASLSILNAA-------------TWIDEERLLLSVLD-TQHMTGGLSKWSD 214
           VD CY+FW+G SL IL A              T  D+E L   +L   Q   GGL     
Sbjct: 222 VDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPG 281

Query: 215 TQADILHT 222
              D  HT
Sbjct: 282 KPRDFYHT 289

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  109 bits (274), Expect = 2e-27
 Identities = 72/253 (28%), Positives = 108/253 (42%), Gaps = 47/253 (18%)

Query: 86  FRSLSYDGAFGQ-GPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSP 144
           FR  S  G  G        +   TY AL SL ++              L  V        
Sbjct: 72  FRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGD-----------DLSRVDR------ 114

Query: 145 QIESLKRWLIFRQRS--GFQGRPNKPVDT-----CYTFWIGASLS-ILNAATW--IDEER 194
             +++  +L   Q     F    +          CY      ++  +L+  +   ID+E+
Sbjct: 115 --KAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCY---CAVAICYMLDDWSEEDIDKEK 169

Query: 195 LLLSVLDTQHMTGGLSKWSDTQADILHTY--------LGEFFVRPRIIKTQIESLKRWLI 246
           L+  +  +Q   GG  +    ++    T+        LG+           +E LKRWL+
Sbjct: 170 LIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSE---KFLERLKRWLV 226

Query: 247 FRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSK 303
            RQ S  GF GRPNKP DTCY+FW+GASL +L++   ID E+    +L TQ  + GG +K
Sbjct: 227 HRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAK 286

Query: 304 WSDTQADILHTYL 316
             D+  D LH+YL
Sbjct: 287 NPDSHPDPLHSYL 299

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score =  107 bits (269), Expect = 1e-26
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 23/176 (13%)

Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RF +CA     +L     ++  + +++I    ++DG FG  P  ESH G  +C +
Sbjct: 129 GEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCV 188

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
            +LA+   L  +                      + L  WL  RQ    G  GRP K  D
Sbjct: 189 GALAITGSLHHV--------------------DKDLLGWWLCERQVKSGGLNGRPEKLPD 228

Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMT-GGLSKWSDTQADILHTYLG 225
            CY++W+ +SL I++   WID+++L   +LD Q    GG+S   D   D+ HT+ G
Sbjct: 229 VCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFG 284

Length = 316

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score =  100 bits (251), Expect = 2e-24
 Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 29/180 (16%)

Query: 53  GDCDMRFVFCACSICYILDDWS-GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCA 111
            + D+R    A     +L          + L+++    +YDG FG  P  ESHG  T CA
Sbjct: 136 DESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACA 193

Query: 112 LASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS-----GFQGRPN 166
            A+LAL+  LD                    SP  +   RWL+ RQR        + R N
Sbjct: 194 AAALALLGDLD--------------------SPDAKKALRWLLSRQRPDGGWGEGRDRTN 233

Query: 167 KPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLG 225
           K  D+CYT W   +L  L       D E+L+  +L  Q+  GG S       D  HT   
Sbjct: 234 KLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFA 293

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 95.2 bits (237), Expect = 5e-22
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 72  DWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASL 131
               +D+ R + F+   +   G FG GP  +SH  ST  A+ SLA+++ LD         
Sbjct: 71  YDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLD--------- 121

Query: 132 YLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATW 189
            L  +          +SL  ++   +     F+      VDT + +   + LS+L     
Sbjct: 122 VLSRIDR--------DSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDK 173

Query: 190 IDEERLLLSVLDTQHMTGGLS--KWSDTQADILHTYLGEFFVRPRIIK-TQIESLKRWLI 246
              E  +  +   Q+  GG     +++  A      L    +  ++ K + +E L RWL 
Sbjct: 174 ELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLA 233

Query: 247 FRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLD-TQHMTGGLSK 303
            RQ S  G  GR NK VDTCY+FW+ +SL+IL    +I+ E L   +LD  Q  +GG S 
Sbjct: 234 ERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSD 293

Query: 304 WSDTQADILHT 314
               + D+ HT
Sbjct: 294 RPGEEPDVYHT 304

Length = 342

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score = 92.2 bits (229), Expect = 1e-20
 Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 34/190 (17%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDDWSGMDRARCL 82
           L+ + R ++ T L     P   F+  + D G+ D+R  + A S+  +L+           
Sbjct: 140 LSSINREKLYTFLLRMKDPSGGFR--MHDGGEMDVRACYTAISVASLLNILDDELVKGVG 197

Query: 83  EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
           ++I    +Y+G  G  P  E+HGG T+C LA++ L+N++D          LDL       
Sbjct: 198 DYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDR---------LDL------- 241

Query: 143 SPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVL 200
                SL  W++FRQ    GFQGR NK VD CY+FW G   ++L           L++++
Sbjct: 242 ----PSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQ---------LVTIV 288

Query: 201 DTQHMTGGLS 210
           D Q  TGG S
Sbjct: 289 DEQLQTGGSS 298

Length = 439

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 89.2 bits (222), Expect = 3e-20
 Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 28/255 (10%)

Query: 76  MDRARCLEFIFRS-LSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLD 134
           ++R   +EF+     + DG FG  P  + H  ST  A+  LAL + L+ +          
Sbjct: 49  LNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKI---------- 98

Query: 135 LVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATWIDE 192
                       E + +++   Q     F G     VDT +++     L++L     ID 
Sbjct: 99  --------DENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDV 150

Query: 193 ERLLLSVLDTQHMTGG--LSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR 250
           ++ +  +L   +  GG      +++ A  +   +G   +   +     + L  WL  RQ 
Sbjct: 151 DKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQL 210

Query: 251 S--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDT 307
              G  GRP K  D CY++W+ +SL I+    WI++ +L   +L  Q    GG +     
Sbjct: 211 PSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGN 270

Query: 308 QADILHTY--LEAMS 320
             D+ HT+  L  +S
Sbjct: 271 MVDVFHTFFGLAGLS 285

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 77/273 (28%), Positives = 108/273 (39%), Gaps = 47/273 (17%)

Query: 68  YILDDWSGMD-RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRP 126
            +L +          + F+ R  +  G FG GP    H  +TY A+ +LA++   +    
Sbjct: 38  ELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYD- 96

Query: 127 TQASLYLDLVKSFLFYSPQI--ESLKRWLI-FRQRSG-FQGRPNKPVDT--CYTFWIGAS 180
                              I  E+L ++L+  +Q  G F+      VD    Y     AS
Sbjct: 97  ------------------VIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVAS 138

Query: 181 LSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKTQI 238
           L  LN  T    E +   +L  Q   GG       +A   +T+  L    +  +  K  +
Sbjct: 139 L--LNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDL 196

Query: 239 ESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNSA-------------TWI 282
           ESL RWL+ RQ     GFQGR NK VD CY+FW+G SL IL +              T  
Sbjct: 197 ESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLF 256

Query: 283 DEERLLLSVLD-TQHMTGGLSKWSDTQADILHT 314
           D+E L   +L   Q   GGL        D  HT
Sbjct: 257 DQEALQEYILLCCQSEEGGLRDKPGKPRDFYHT 289

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 23/253 (9%)

Query: 68  YILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPT 127
            +L     +DR   + ++ R     G FG     + H   T  A+  LAL ++LD L   
Sbjct: 48  DLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLD-- 105

Query: 128 QASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
                 D V S+      +  L+      +   F G     +DT +++     LS+L   
Sbjct: 106 -----ADKVASY------VAGLQN-----EDGSFSGDEWGEIDTRFSYCALCCLSLLKRL 149

Query: 188 TWIDEERLLLSVLDTQHMTGGL--SKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWL 245
             I+ E+ +  ++  ++  GG   +   ++ A  +   +G   +   +     + L  WL
Sbjct: 150 DKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWL 209

Query: 246 IFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMT-GGLS 302
             RQ    G  GRP K  D CY++W+ +SL I++   WID+++L   +LD Q    GG+S
Sbjct: 210 CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGIS 269

Query: 303 KWSDTQADILHTY 315
              D   D+ HT+
Sbjct: 270 DRPDDAVDVFHTF 282

Length = 316

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 74.1 bits (182), Expect = 6e-15
 Identities = 55/265 (20%), Positives = 80/265 (30%), Gaps = 46/265 (17%)

Query: 82  LEFIFRSLSYDGAFG-QGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFL 140
           ++ +      DG F   G         T  AL +L L      +                
Sbjct: 58  IQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAV---------------- 101

Query: 141 FYSPQIESLKRWLIFRQRS---------GFQGRPNKPVDTCYTFWIGASLSILNAAT-WI 190
                +     WL+  Q           G         D   T +   +L++L       
Sbjct: 102 -DRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP 160

Query: 191 DEERLLLSVLDTQHMTGGLSKWSDTQADILHTY----LGEFFVR-PRIIKTQIESLKRWL 245
             E+ L  +L  Q+  GG            H Y              +     +   RWL
Sbjct: 161 LIEKALDYLLSCQNYDGGFGPG-----GESHGYGTACAAAALALLGDLDSPDAKKALRWL 215

Query: 246 IFRQRS-----GFQGRPNKPVDTCYTFWIGASLSILNSA-TWIDEERLLLSVLDTQHMTG 299
           + RQR        + R NK  D+CYT W   +L  L       D E+L+  +L  Q+  G
Sbjct: 216 LSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDG 275

Query: 300 GLSKWSDTQADILHTY--LEAMSHA 322
           G S       D  HT   L A+S  
Sbjct: 276 GFSSKPGKSYDTQHTVFALLALSLY 300

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 43/243 (17%)

Query: 70  LDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQA 129
           LDD   ++    ++F+ R    +G +G GP    H  +TY A+      N L T+   +A
Sbjct: 89  LDD--ELEN-DTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAV------NTLVTIGGERA 139

Query: 130 SLYLDLVKSFLFYSPQIESLKRWLIFRQRSG-FQGRPNKPVDT--CYTFWIGASLSILNA 186
              ++  K + F       L R    +  SG F+      +D   CYT     ++S+ + 
Sbjct: 140 LSSINREKLYTF-------LLR---MKDPSGGFRMHDGGEMDVRACYT-----AISVASL 184

Query: 187 ATWIDEE---RLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKTQIESL 241
              +D+E    +   +L  Q   GG+      +A   +T+  L    +   + +  + SL
Sbjct: 185 LNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSL 244

Query: 242 KRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTG 299
             W++FRQ    GFQGR NK VD CY+FW G   ++L           L++++D Q  TG
Sbjct: 245 INWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQ---------LVTIVDEQLQTG 295

Query: 300 GLS 302
           G S
Sbjct: 296 GSS 298

Length = 439

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 144 PQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILN 185
              E L  +L+  Q    GF GRP    DT YT+   A+L++L 
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 238 IESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILN 277
            E L  +L+  Q    GF GRP    DT YT+   A+L++L 
Sbjct: 3   KEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 76  MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMN 119
           +D+ + ++++    + DG FG  P  ES    TYCALA+LAL+ 
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 26/121 (21%)

Query: 92  DGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKR 151
           DG +G      S    T  AL +LA +                        +P ++    
Sbjct: 11  DGGWGAAVGGGSDVAMTALALLALAALG----------------------ETPDVKKALA 48

Query: 152 WLIFRQRS--GFQGRPNK-PVDTCYTFWIGASLSILNAATWIDE-ERLLLSVLDTQHMTG 207
           WL+ +Q    GF   P     D   T +  A+L +L      +  E+ +  +L  Q+  G
Sbjct: 49  WLLSQQNPDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDG 108

Query: 208 G 208
           G
Sbjct: 109 G 109

Length = 112

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRS--GFQGR 256
           +L  Q+  GG        +D+  T L    +        ++    WL+ +Q    GF   
Sbjct: 4   LLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKKALAWLLSQQNPDGGFGYD 63

Query: 257 PNK-PVDTCYTFWIGASLSILNSATWIDE-ERLLLSVLDTQHMTGG 300
           P     D   T +  A+L +L      +  E+ +  +L  Q+  GG
Sbjct: 64  PQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGG 109

Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
KOG0366|consensus	329		100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
KOG0367|consensus	347		100.0
KOG0365|consensus	423		100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
KOG0367|consensus	347		100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
KOG0366|consensus	329		100.0
KOG0365|consensus	423		100.0
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.97
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.94
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.85
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.84
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.82
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.82
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.8
PLN02993	763	lupeol synthase	99.79
PLN03012	759	Camelliol C synthase	99.79
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.76
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.76
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.74
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.7
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.66
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.65
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.62
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.61
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.61
PLN03012	759	Camelliol C synthase	99.59
PLN02993	763	lupeol synthase	99.57
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.41
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.36
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.22
KOG0497|consensus	760		99.22
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.16
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.15
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.07
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	98.95
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	98.9
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	98.83
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.72
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	98.71
KOG0497|consensus	760		98.26
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.18
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	97.77
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	97.49
PLN02592	800	ent-copalyl diphosphate synthase	96.49
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	96.26
PLN02279	784	ent-kaur-16-ene synthase	96.12
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	95.95
PF05817	636	Ribophorin_II: Oligosaccharyltransferase subunit R	91.67
KOG1366|consensus	1436		90.82
PLN02592	800	ent-copalyl diphosphate synthase	80.01

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=3.1e-69  Score=517.27  Aligned_cols=298  Identities=22%  Similarity=0.350  Sum_probs=271.8

Q ss_pred             CChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCcc
Q psy6404          24 LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLES  103 (361)
Q Consensus        24 l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~s  103 (361)
                      ...+.++++++||+++|+.+++|.... ...++++.+||++.+|.+|+.....+++++++||++||++||||++.|++++
T Consensus         5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~-~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~   83 (316)
T PLN03201          5 MGELVVDKHVRYIKSLEKKKDSFESVV-MEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDP   83 (316)
T ss_pred             hhhccHHHHHHHHHHhCCCCCCccccc-cccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcc
Confidence            455679999999999999889997642 2356888899999999999987788999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHH
Q psy6404         104 HGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASL  181 (361)
Q Consensus       104 h~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L  181 (361)
                      |+.+||+|+++|.+++..+                    ..+++++++||.++|  ||||.+++++++|+|+||||++++
T Consensus        84 h~~~Ty~al~~L~ll~~~~--------------------~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l  143 (316)
T PLN03201         84 HILYTLSAVQILALFDRLD--------------------LLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCL  143 (316)
T ss_pred             cHHHHHHHHHHHHHhhhhh--------------------hhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHH
Confidence            9999999999999996532                    347889999999988  999999999999999999999999


Q ss_pred             HHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCCCC
Q psy6404         182 SILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQGRP  257 (361)
Q Consensus       182 ~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~GR~  257 (361)
                      .+++..+.++++++++||++||++||||+..|+.|+|+++||||+++|..  .++..+.+++++||.+||.  |||+|||
T Consensus       144 ~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp  223 (316)
T PLN03201        144 SLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRP  223 (316)
T ss_pred             HHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCC
Confidence            99998777899999999999999999999999999999999999999863  3445678899999999997  9999999


Q ss_pred             CCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCCCChHHHHHHH--HHhcccCCCccccccC
Q psy6404         258 NKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLEA--MSHASRNKLKERNFQL  334 (361)
Q Consensus       258 nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~~~~~~  334 (361)
                      ||++|+|||||++++|.+|+..+|+|.+++++||++||++ .|||+|+|++.||+|||||++  +||.+++.+.|++|.+
T Consensus       224 ~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~l~~~~p~~  303 (316)
T PLN03201        224 EKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPIDPAY  303 (316)
T ss_pred             CCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCCCCCCCCcc
Confidence            9999999999999999999999999999999999999975 899999999999999999975  6999999999999999


Q ss_pred             CCCccccc
Q psy6404         335 PLDKKDIA  342 (361)
Q Consensus       335 ~~~~~~~~  342 (361)
                      +++++..+
T Consensus       304 ~~~~~~~~  311 (316)
T PLN03201        304 ALPVDVVN  311 (316)
T ss_pred             cCCHHHHH
Confidence            99876654

>KOG0366|consensus

Probab=100.00  E-value=2.4e-68  Score=476.43  Aligned_cols=299  Identities=23%  Similarity=0.341  Sum_probs=272.9

Q ss_pred             CCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404          22 GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCL  101 (361)
Q Consensus        22 ~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~  101 (361)
                      +....+.++++++|+.+..+...+|..... ..-+++.+||++.++.+|+..+..++++++.|+++||+.+|||++.|++
T Consensus        13 d~~~~Ll~dkH~~yI~~~~~kk~~fey~l~-EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Gh   91 (329)
T KOG0366|consen   13 DAPDELLKDKHARYIESYGKKKDSFEYCLT-EHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGH   91 (329)
T ss_pred             CcHHHHHHHHHHHHHHHhccccchHHHHHH-hHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCC
Confidence            334556799999999997666566665432 2368889999999999999988889999999999999999999999999


Q ss_pred             ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404         102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA  179 (361)
Q Consensus       102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~  179 (361)
                      .+|+.+|++|+++|++++..+.                    .|++++.+|+...|  ||+|.|...+|.|+|++|||++
T Consensus        92 d~hll~TlsAvQiL~~ydsi~~--------------------~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~  151 (329)
T KOG0366|consen   92 DPHLLYTLSAVQILALYDSINV--------------------LDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVA  151 (329)
T ss_pred             ChHHHHHHHHHHHHHHHccccc--------------------ccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHH
Confidence            9999999999999999987543                    37888999999766  9999999999999999999999


Q ss_pred             HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      +|++|+.++.++++++++|+++|.|.|||||..|+.|||.+..||++.+|..  +++..+.+.+-.||++||.  ||.||
T Consensus       152 ~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNG  231 (329)
T KOG0366|consen  152 CLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNG  231 (329)
T ss_pred             HHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999864  6778889999999999998  99999


Q ss_pred             CCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCCChHHHHHHH--HHhcccCCCccccc
Q psy6404         256 RPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLEA--MSHASRNKLKERNF  332 (361)
Q Consensus       256 R~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~~~~  332 (361)
                      ||.|++|+|||||++++|.|++..+|||.+++++||+.||+ +.|||+|+|+..+|+|||+|++  +||.+.++++||+|
T Consensus       232 RpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP  311 (329)
T KOG0366|consen  232 RPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDP  311 (329)
T ss_pred             CcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCC
Confidence            99999999999999999999999999999999999999998 6999999999999999999964  79999999999999


Q ss_pred             cCCCCcccc
Q psy6404         333 QLPLDKKDI  341 (361)
Q Consensus       333 ~~~~~~~~~  341 (361)
                      ..++.+...
T Consensus       312 ~fcmp~~v~  320 (329)
T KOG0366|consen  312 IFCMPKEVL  320 (329)
T ss_pred             cccCcHHHH
Confidence            988866443

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=3.3e-67  Score=515.03  Aligned_cols=282  Identities=23%  Similarity=0.292  Sum_probs=249.0

Q ss_pred             CChhhHHHHHHHHHhccCC-CCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404          24 LALVYRLQISTSLRSFTTP-CFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCL  101 (361)
Q Consensus        24 l~~~~~~~~~~~L~~~Q~~-dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~  101 (361)
                      ...+.|+++++|++++-.+ +..|...   ..++++.+||+|.+|.+|+. ++.++++++++||.+||++||||+++|++
T Consensus        41 ~~~l~~~~H~~yl~~~l~~lp~~~~~l---Da~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~  117 (439)
T PLN02710         41 MLELWREKHLEYLTRGLRQLGPSFSVL---DANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQ  117 (439)
T ss_pred             cccccHHHHHHHHHHHhhcCChhhhhh---hhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCC
Confidence            3568899999999986433 3344443   24799999999999999996 56778999999999999999999999999


Q ss_pred             ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404         102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA  179 (361)
Q Consensus       102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~  179 (361)
                      ++|+++||+||++|.+++..+.                 ++..+++++++||.++|  ||||.+.+++|.|+|+||||++
T Consensus       118 ~~hl~~TY~Av~~L~iLg~~~~-----------------l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAla  180 (439)
T PLN02710        118 LPHLATTYAAVNTLVTIGGERA-----------------LSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAIS  180 (439)
T ss_pred             CccHHHHHHHHHHHHHcCCchh-----------------hcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHH
Confidence            9999999999999999997322                 23458899999999988  9999999999999999999999


Q ss_pred             HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      ++.+|+.++.++.+++++||++||++||||+..|+.|+|+++|||||++|..  .++..+++++++||.+||.  |||+|
T Consensus       181 il~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~G  260 (439)
T PLN02710        181 VASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQG  260 (439)
T ss_pred             HHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCC
Confidence            9999998888899999999999999999999999999999999999999864  4556789999999999996  99999


Q ss_pred             CCCCCCcccccchHHHHHHHhhccCc------------------------------------------------------
Q psy6404         256 RPNKPVDTCYTFWIGASLSILNSATW------------------------------------------------------  281 (361)
Q Consensus       256 R~nK~~D~CYsfW~~a~L~~L~~~~~------------------------------------------------------  281 (361)
                      ||||++|+|||||++++|.||+..++                                                      
T Consensus       261 R~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (439)
T PLN02710        261 RTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQ  340 (439)
T ss_pred             CCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999986533                                                      


Q ss_pred             -----ccHHHHHHHHHhc-cCCCCCcCCCCCCCCChHHHHHHH--HHhcccC
Q psy6404         282 -----IDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTYLEA--MSHASRN  325 (361)
Q Consensus       282 -----~~~~~~~~~il~~-Q~~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~  325 (361)
                           +|.+++++||+.| |.+.|||+|+|++.||+|||||++  +|++++.
T Consensus       341 ~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~  392 (439)
T PLN02710        341 QMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYS  392 (439)
T ss_pred             ccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhc
Confidence                 5667899999854 567999999999999999999965  6777664

>KOG0367|consensus

Probab=100.00  E-value=1.2e-65  Score=466.54  Aligned_cols=301  Identities=27%  Similarity=0.386  Sum_probs=264.4

Q ss_pred             ChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC---C-----CC
Q psy6404          25 ALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYD---G-----AF   95 (361)
Q Consensus        25 ~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~d---G-----GF   95 (361)
                      .++.+++++.|+.++ |.-+-.|.+.   ..+++..+++++++|.+|+.....+++..++||++.|-..   +     ||
T Consensus         9 ~~~~~~kH~~ff~RhL~llP~~y~sh---d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF   85 (347)
T KOG0367|consen    9 SRFERKKHIKFFERHLQLLPSPYQSH---DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGF   85 (347)
T ss_pred             chhhHHHHHHHHHHHHHhCCCccccc---ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeee
Confidence            456799999999985 6555555543   2478889999999999999888889999999999998321   2     46


Q ss_pred             CCC----------CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404          96 GQG----------PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG  163 (361)
Q Consensus        96 ~~~----------p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~  163 (361)
                      .+.          +..++|+++||+++++|.++|+.                   +++.|++.+++++..+|  ||+|..
T Consensus        86 ~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGdd-------------------LsrlDrksil~~v~~~Q~~dGsF~~  146 (347)
T KOG0367|consen   86 RGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDD-------------------LSRLDRKSILRFVSACQRPDGSFVS  146 (347)
T ss_pred             eeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcch-------------------HhhhhHHHHHHHHHHhcCCCCceee
Confidence            443          23478999999999999999972                   24568999999999888  999987


Q ss_pred             C-CCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--c------cc
Q psy6404         164 R-PNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--R------II  234 (361)
Q Consensus       164 ~-~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~------~~  234 (361)
                      . .+.++|+|++|||++++.||+.++.+|.++++.||++||+|||||+..|+.|||+|+||||||+|..  .      ..
T Consensus       147 ~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~  226 (347)
T KOG0367|consen  147 INVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSN  226 (347)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhcc
Confidence            5 4678999999999999999999999999999999999999999999999999999999999999852  2      23


Q ss_pred             hhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCCCCh
Q psy6404         235 KTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADI  311 (361)
Q Consensus       235 ~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~~D~  311 (361)
                      +.+++++++||++||.  ||||||+||++||||+||++++|.+|++..++|.+.+++||++||++ .|||+|+|+..||+
T Consensus       227 ~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~  306 (347)
T KOG0367|consen  227 TSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDL  306 (347)
T ss_pred             ccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchH
Confidence            4568999999999998  79999999999999999999999999999999999999999999987 79999999999999


Q ss_pred             HHHHHHH--HHhcccCCCccccccCCCCcccccchhhH
Q psy6404         312 LHTYLEA--MSHASRNKLKERNFQLPLDKKDIAPLDEL  347 (361)
Q Consensus       312 ~hT~~a~--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (361)
                      |||||++  +||+.++.+.|++|.++++.+.+++...+
T Consensus       307 ~HsylG~~alal~ee~~~~~v~p~l~~s~~~~~r~~~l  344 (347)
T KOG0367|consen  307 LHSYLGLAALALLEEKGLSPVCPSLNMSMRASERCCDL  344 (347)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCccccccHHHHHHHHHH
Confidence            9999974  69999999999999999999988876654

>KOG0365|consensus

Probab=100.00  E-value=3e-65  Score=471.84  Aligned_cols=282  Identities=26%  Similarity=0.337  Sum_probs=250.2

Q ss_pred             HHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCch
Q psy6404          29 RLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG  106 (361)
Q Consensus        29 ~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~  106 (361)
                      |+++..||.+. .+-+-.|..-   ..++.|++||.+.++.+|+. ++..-.+++|+|+..||.|.||||++|++.+|++
T Consensus        74 r~kH~~YL~~~Lr~Lp~~~~~L---DASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA  150 (423)
T KOG0365|consen   74 RQKHLMYLDKMLRQLPSQYTCL---DASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLA  150 (423)
T ss_pred             HHHHHHHHHHHHHhCCCccccc---ccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhh
Confidence            89999999984 3333445543   24799999999999999995 4455688999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404         107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSIL  184 (361)
Q Consensus       107 ~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll  184 (361)
                      +||+||.+|.+++..+.                 ++.++++++..||.+..  ||||..+.++|.|+|.+|||+++.+++
T Consensus       151 ~TYAAVnaL~~~~~e~A-----------------~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasll  213 (423)
T KOG0365|consen  151 PTYAAVNALCLCGSEDA-----------------YSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLL  213 (423)
T ss_pred             HHHHHHHHHHhcCcHHH-----------------HHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHH
Confidence            99999999999998544                 24568999999999754  999999999999999999999999999


Q ss_pred             hhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCC
Q psy6404         185 NAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNK  259 (361)
Q Consensus       185 ~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK  259 (361)
                      |...++-.+.+.+||.+||+++||||..|+.|+|+++||||+|+|..  ..+..|+++|++|..+||+   +||+||+||
T Consensus       214 ni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNK  293 (423)
T KOG0365|consen  214 NIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNK  293 (423)
T ss_pred             CCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccc
Confidence            99877778999999999999999999999999999999999999863  5677899999999999998   999999999


Q ss_pred             CCcccccchHHHHHHHhhcc-----C-----cccHHHHHHHHH-hccCCCCCcCCCCCCCCChHHHHHHH--HHhcccCC
Q psy6404         260 PVDTCYTFWIGASLSILNSA-----T-----WIDEERLLLSVL-DTQHMTGGLSKWSDTQADILHTYLEA--MSHASRNK  326 (361)
Q Consensus       260 ~~D~CYsfW~~a~L~~L~~~-----~-----~~~~~~~~~~il-~~Q~~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~  326 (361)
                      +||+|||||++|+..||+..     +     .+|.+++++||+ +||.+.|||+|+|++++|+|||||-+  +|++++..
T Consensus       294 LVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~  373 (423)
T KOG0365|consen  294 LVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYS  373 (423)
T ss_pred             hhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhhhc
Confidence            99999999999999999874     1     578899999987 99999999999999999999999954  67777766


Q ss_pred             Cccc
Q psy6404         327 LKER  330 (361)
Q Consensus       327 ~~~~  330 (361)
                      +.+-
T Consensus       374 ~~~~  377 (423)
T KOG0365|consen  374 CAPS  377 (423)
T ss_pred             cCCC
Confidence            5443

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-65  Score=468.22  Aligned_cols=305  Identities=25%  Similarity=0.329  Sum_probs=265.9

Q ss_pred             HHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCC-cccHHHHHHHHHhcCCCCCC
Q psy6404          16 LEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWS-GMDRARCLEFIFRSLSYDGA   94 (361)
Q Consensus        16 L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~-~~~~~~~i~~i~~~q~~dGG   94 (361)
                      +..+ .++-..+.+++++.|+..+-...--+.... ...++++.+||....+.+++... ..++++.+.++++|+.++||
T Consensus        16 ~~~f-~~~~l~L~~~~H~~yl~~~~~~~~~~~~~l-~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~   93 (342)
T COG5029          16 HRKF-FSRHLQLLPDKHIGYLVERMAITFPSLFGL-LEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGG   93 (342)
T ss_pred             HHHh-cCcccccccchHHHHHHHhhhccccchhhh-hhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCC
Confidence            3344 333344668999999997633222122221 12478999999999999999765 67899999999999999999


Q ss_pred             CCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCcc
Q psy6404          95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTC  172 (361)
Q Consensus        95 F~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~  172 (361)
                      |+++|++++|+.+||+||++|.+++.++.                 +++.+++++.+||..+|  ||+|++.-.+|+|+|
T Consensus        94 f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~-----------------~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr  156 (342)
T COG5029          94 FGGGPGQDSHLASTVFAIQSLAMLDSLDV-----------------LSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTR  156 (342)
T ss_pred             cCCCCccchhHHHHHHHHHHHHHhccccc-----------------cchhhHHHHHHHHHhccCCCCceecccCCcchHH
Confidence            99999999999999999999999987643                 34568889999999877  999999988999999


Q ss_pred             chhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhh-HHHHHHHHHHhh
Q psy6404         173 YTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQ-IESLKRWLIFRQ  249 (361)
Q Consensus       173 ~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~-~~~l~~WL~~rQ  249 (361)
                      ..|+|+++++++|.++.++.+.+++||++|||+|||||..|+.|||+++||||+++|..  .+++.+ ++++++||.+||
T Consensus       157 ~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ  236 (342)
T COG5029         157 FLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQ  236 (342)
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999864  566665 799999999999


Q ss_pred             c--CCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCCCChHHHHHHH--HHhccc
Q psy6404         250 R--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLEA--MSHASR  324 (361)
Q Consensus       250 ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~~D~~hT~~a~--~sl~~~  324 (361)
                      .  ||||||+||++|+|||||++++|.||+...|+|.+++++||+.||.+ .|||+|+|++.||+|||+|++  +|++..
T Consensus       237 ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~  316 (342)
T COG5029         237 LSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEY  316 (342)
T ss_pred             cccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhcc
Confidence            7  99999999999999999999999999999999999999999977755 999999999999999999975  688888


Q ss_pred             CCCccccccCCCCcc
Q psy6404         325 NKLKERNFQLPLDKK  339 (361)
Q Consensus       325 ~~~~~~~~~~~~~~~  339 (361)
                      ..++|++|.+++..+
T Consensus       317 k~l~~v~p~~clP~e  331 (342)
T COG5029         317 KYLNPVDPIYCLPQE  331 (342)
T ss_pred             CCCCCCCCcccCCHH
Confidence            889999999887653

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=7.2e-63  Score=470.35  Aligned_cols=274  Identities=27%  Similarity=0.343  Sum_probs=246.1

Q ss_pred             HHHHHHHHHhccC-CCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCch
Q psy6404          29 RLQISTSLRSFTT-PCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG  106 (361)
Q Consensus        29 ~~~~~~~L~~~Q~-~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~  106 (361)
                      |++|++|++++.. .+++|.+.   ..++++.+||++.+|.+|+. ...++++++++||++||++||||++.+++++|+.
T Consensus         1 ~~~h~~~~~~~l~~~p~~~~~~---d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~   77 (299)
T cd02893           1 REKHIKYLKKSLRQLPSSFTSL---DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLA   77 (299)
T ss_pred             ChHHHHHHHHHhhcCCcccccc---ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHH
Confidence            5789999999765 56777765   24789999999999999986 5567799999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404         107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSIL  184 (361)
Q Consensus       107 ~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll  184 (361)
                      +||+|+++|.+++..+.                 ++..+++++++||.++|  ||||...+++|+|+|+|||+++++.+|
T Consensus        78 ~Ty~A~~~L~ll~~~~~-----------------~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL  140 (299)
T cd02893          78 TTYAAVNALAIIGTEEA-----------------YDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLL  140 (299)
T ss_pred             HHHHHHHHHHHhCCchh-----------------hhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHh
Confidence            99999999999996321                 13457889999999988  999999999999999999999999999


Q ss_pred             hhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCC
Q psy6404         185 NAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNK  259 (361)
Q Consensus       185 ~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK  259 (361)
                      +..+.++.+++++||++||++||||+..|+.|+|+++||||+++|..  ..+..+++++++||.+||.   |||+|||||
T Consensus       141 ~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k  220 (299)
T cd02893         141 NILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNK  220 (299)
T ss_pred             CCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCC
Confidence            98878889999999999999999999999999999999999999864  3445689999999999996   899999999


Q ss_pred             CCcccccchHHHHHHHhhcc-------------CcccHHHHHHHHHhc-cCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         260 PVDTCYTFWIGASLSILNSA-------------TWIDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       260 ~~D~CYsfW~~a~L~~L~~~-------------~~~~~~~~~~~il~~-Q~~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                      ++|+|||||++++|++++..             .++|.+++++||+.| |+..|||+|+|++.||+|||||++++|+
T Consensus       221 ~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Ls  297 (299)
T cd02893         221 LVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLS  297 (299)
T ss_pred             CCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHh
Confidence            99999999999999999974             468999999999955 5679999999999999999999987665

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4.2e-60  Score=452.67  Aligned_cols=272  Identities=26%  Similarity=0.381  Sum_probs=241.4

Q ss_pred             HHHHHHHHHhccCC-CCcccccCCCCCCchhHHHHHHHHHHHhcCCC---cccHHHHHHHHHhcC----CCCCCCCCCCC
Q psy6404          29 RLQISTSLRSFTTP-CFSFKCTLADGDCDMRFVFCACSICYILDDWS---GMDRARCLEFIFRSL----SYDGAFGQGPC  100 (361)
Q Consensus        29 ~~~~~~~L~~~Q~~-dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~---~~~~~~~i~~i~~~q----~~dGGF~~~p~  100 (361)
                      ++++++|+.++.++ +.+|...   ..++++.+||+|.+|.+|+...   .++++++++||.+||    ++||||++.++
T Consensus         1 ~~~H~~y~~~~l~~lp~~~~~~---d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~   77 (307)
T cd02895           1 KKKHVKFFQRCLQLLPSSYQSL---DTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSST   77 (307)
T ss_pred             ChHHHHHHHHHhhhCCchhhhh---hhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Confidence            46899999987543 3445443   3478999999999999998643   688999999999999    99999999886


Q ss_pred             ----------CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCC---
Q psy6404         101 ----------LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRP---  165 (361)
Q Consensus       101 ----------~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~---  165 (361)
                                +++|+++||+|+++|.+|+..  .                 +..+++++++||.++|  ||||.+.+   
T Consensus        78 ~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~--~-----------------~~idr~~i~~~l~~~q~~dGgF~~~~~~~  138 (307)
T cd02895          78 LGLPGTASKYDTGNLAMTYFALLSLLILGDD--L-----------------SRVDRKAILNFLSKLQLPDGSFGSVLDSE  138 (307)
T ss_pred             CccccccccCCcccHHHHHHHHHHHHHhCCc--h-----------------hhhhHHHHHHHHHHhCCCCCCccCCcCCc
Confidence                      479999999999999999862  1                 1247899999999988  99999987   


Q ss_pred             CCCCCccchhHHHHHHHHhhhhc--cccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccc---hhhH
Q psy6404         166 NKPVDTCYTFWIGASLSILNAAT--WIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RII---KTQI  238 (361)
Q Consensus       166 ~~~~D~~~ty~a~~~L~ll~~~~--~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~---~~~~  238 (361)
                      ++|+|+++||||++++.+|+..+  .+|.+++++||++||++||||+..|+.|+|+++||||+++|..  ...   ..+.
T Consensus       139 ~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~  218 (307)
T cd02895         139 GGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFL  218 (307)
T ss_pred             CCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccH
Confidence            78999999999999999999765  5789999999999999999999999999999999999999863  232   5789


Q ss_pred             HHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCCChHHHH
Q psy6404         239 ESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTY  315 (361)
Q Consensus       239 ~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~D~~hT~  315 (361)
                      +++++||.+||.  |||+|||||++|+|||||++++|.||+..+++|.+++++||+.||+ ..|||+++|++.||+||||
T Consensus       219 ~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~  298 (307)
T cd02895         219 ERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSY  298 (307)
T ss_pred             HHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHH
Confidence            999999999997  8999999999999999999999999999999999999999998885 5999999999999999999


Q ss_pred             HHHHHhc
Q psy6404         316 LEAMSHA  322 (361)
Q Consensus       316 ~a~~sl~  322 (361)
                      +++.+|+
T Consensus       299 ~~la~Ls  305 (307)
T cd02895         299 LGLAALS  305 (307)
T ss_pred             HHHHHHH
Confidence            9987664

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.3e-59  Score=444.69  Aligned_cols=274  Identities=23%  Similarity=0.373  Sum_probs=247.0

Q ss_pred             hHHHHHHHHHhccCC--CCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC-CCCCCCCCCCCCccC
Q psy6404          28 YRLQISTSLRSFTTP--CFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSL-SYDGAFGQGPCLESH  104 (361)
Q Consensus        28 ~~~~~~~~L~~~Q~~--dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q-~~dGGF~~~p~~~sh  104 (361)
                      ++++|++|++++.+.  +..|...   ..++++.+||++.++.+|+.....+++++++||++|| +++|||++.++.++|
T Consensus         2 ~~~~h~~y~~~~~~~~~~~~~~~~---~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~   78 (287)
T cd02894           2 LLEKHIEYILSLTKKKDDYEYILT---EHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPH   78 (287)
T ss_pred             CHHHHHHHHHHhccccCChhhhhH---HhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcch
Confidence            589999999998774  3333332   3478999999999999999877788999999999999 789999999999999


Q ss_pred             chhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHH
Q psy6404         105 GGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLS  182 (361)
Q Consensus       105 ~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~  182 (361)
                      +.+||+|+.+|.+++..+.+                  ...++++++||.++|  ||||.+.+++++|+++||||++++.
T Consensus        79 ~~~t~~a~~~L~ll~~~~~i------------------~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~  140 (287)
T cd02894          79 ILSTLSAIQILALYDLLNKI------------------DENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLT  140 (287)
T ss_pred             HHHHHHHHHHHHHhhhhhhc------------------cHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHH
Confidence            99999999999999753322                  113789999999988  9999999999999999999999999


Q ss_pred             HhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCCCCC
Q psy6404         183 ILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQGRPN  258 (361)
Q Consensus       183 ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~GR~n  258 (361)
                      +++..+.++++++++||++||++||||+..|+.|+|.++||||+++|..  ..+..+++++++||.+||.  |||+||||
T Consensus       141 ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~  220 (287)
T cd02894         141 LLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPE  220 (287)
T ss_pred             HhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCC
Confidence            9998778899999999999999999999999999999999999999864  3455689999999999997  99999999


Q ss_pred             CCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         259 KPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       259 K~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                      |.+|+|||||++++|.+|+..+|+|.+++++||++||+ +.|||+++|++.||+||||+++++|+
T Consensus       221 k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Ls  285 (287)
T cd02894         221 KLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLS  285 (287)
T ss_pred             CCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999994 79999999999999999999987765

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.9e-55  Score=417.66  Aligned_cols=274  Identities=31%  Similarity=0.449  Sum_probs=245.6

Q ss_pred             HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcC-CCCCCCCCCCCCccCch
Q psy6404          29 RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSL-SYDGAFGQGPCLESHGG  106 (361)
Q Consensus        29 ~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q-~~dGGF~~~p~~~sh~~  106 (361)
                      ++++++||+++++.+ .+... ....++++.+||++.++.+|+. .+..+++++++||++|| ++||||+..++.++|+.
T Consensus         1 ~~~h~~~l~~~~~~~-~~~~~-~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~   78 (286)
T cd02890           1 REKHIKYLQRCLKLL-PSSYT-SLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLA   78 (286)
T ss_pred             ChHHHHHHHHHhhcC-Chhhh-hHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHH
Confidence            478999999987765 22222 1235799999999999999997 66788999999999999 99999999999999999


Q ss_pred             hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404         107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSIL  184 (361)
Q Consensus       107 ~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll  184 (361)
                      .||+|+.+|.+++.. .                 .+..+++++++||.++|  ||||.+++.+++|+++|||++++|.++
T Consensus        79 ~T~~al~~l~llg~~-~-----------------~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll  140 (286)
T cd02890          79 STYAAVLSLAILGDD-A-----------------LSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLL  140 (286)
T ss_pred             HHHHHHHHHHHcCcc-c-----------------cchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHh
Confidence            999999999999962 1                 12247889999999988  999999999999999999999999999


Q ss_pred             hhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCC
Q psy6404         185 NAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNK  259 (361)
Q Consensus       185 ~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK  259 (361)
                      +....++.+++++||++||++||||+..|+.++|..+||||+++|..  ..+..+++++++||.+||.   |||+||+||
T Consensus       141 ~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~  220 (286)
T cd02890         141 NILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNK  220 (286)
T ss_pred             CCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCC
Confidence            98767889999999999999999999999999999999999999864  3456789999999999997   499999999


Q ss_pred             CCcccccchHHHHHHHhhccCcccHHHHHHHHH-hccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         260 PVDTCYTFWIGASLSILNSATWIDEERLLLSVL-DTQHMTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       260 ~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il-~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                      .+|+||+||++++|.+|+...|+|.+++.+||+ ++|.+.|||+++|++.||+||||+++++|+
T Consensus       221 ~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~ls  284 (286)
T cd02890         221 LVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLS  284 (286)
T ss_pred             CCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHH
Confidence            999999999999999999988999999999999 678899999999999999999999987765

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=3.7e-49  Score=377.26  Aligned_cols=255  Identities=22%  Similarity=0.210  Sum_probs=229.8

Q ss_pred             CCchhHHHHHHHHHHccCCCCC--ChhhHHHHHHHHHhcc----CCCCcccccCCC---------CCCchhHHHHHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGVL--ALVYRLQISTSLRSFT----TPCFSFKCTLAD---------GDCDMRFVFCACSIC   67 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~l--~~~~~~~~~~~L~~~Q----~~dG~f~~~~~~---------~~~d~~~ty~al~~l   67 (361)
                      +++++.||++|.+|++| |++.  +.++|+++++||+++|    +++|||.+.+..         ++++++.||+|+.++
T Consensus        24 ~~r~~~~yf~l~~L~lL-~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L  102 (307)
T cd02895          24 TNRLTIAFFALSGLDLL-GALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSL  102 (307)
T ss_pred             hhhHHHHHHHHHHHHHh-CCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHH
Confidence            56789999999999999 7665  5789999999999999    999999987521         368999999999999


Q ss_pred             HHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCC---CCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCCh
Q psy6404          68 YILDD-WSGMDRARCLEFIFRSLSYDGAFGQGP---CLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS  143 (361)
Q Consensus        68 ~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p---~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~  143 (361)
                      .+|+. ++.++++++++||++||++||||++.+   ++|+|++.|||||+++.+++..+.                  +.
T Consensus       103 ~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~------------------~~  164 (307)
T cd02895         103 LILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE------------------ED  164 (307)
T ss_pred             HHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc------------------cc
Confidence            99975 445789999999999999999999997   889999999999999999997432                  01


Q ss_pred             HhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc---cccHHHHHHHHHhccCCCCCCCCCCCCCCc
Q psy6404         144 PQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT---WIDEERLLLSVLDTQHMTGGLSKWSDTQAD  218 (361)
Q Consensus       144 ~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~---~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~  218 (361)
                      .+++++++||.+||  ||||.+.|+.|+|+++||||+++|.+|+...   .++.+++++||++||+++|||+..|+.++|
T Consensus       165 ~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D  244 (307)
T cd02895         165 IDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPAD  244 (307)
T ss_pred             ccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCc
Confidence            37899999999999  9999999999999999999999999999865   689999999999999999999999999999


Q ss_pred             hhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404         219 ILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSIL  276 (361)
Q Consensus       219 ~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L  276 (361)
                      ..+|||++++|..  .....+.+++.+||.++|.   |||++||.|.+|.|++||.+++|.++
T Consensus       245 ~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~  307 (307)
T cd02895         245 TCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI  307 (307)
T ss_pred             cchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence            9999999999863  3445789999999999874   99999999999999999999999875

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=3.1e-48  Score=368.40  Aligned_cols=250  Identities=24%  Similarity=0.288  Sum_probs=227.3

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhcc-CCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCccc--HHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFT-TPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMD--RAR   80 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q-~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~--~~~   80 (361)
                      .-++.||++|.+|.+| | .++.++|+++++||+++| +++|+|.+.+ +.++++..||+|+.++.+++.+..++  +++
T Consensus        28 ~r~~~~y~~l~~l~lL-~-~~~~~~~~~~i~fl~~~q~~~~GgF~~~~-~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~  104 (287)
T cd02894          28 LRMSGIYWGLTALDLL-G-QLERLNREEIIEFVKSCQDNEDGGFGGSP-GHDPHILSTLSAIQILALYDLLNKIDENKEK  104 (287)
T ss_pred             hHHHHHHHHHHHHHHh-C-CCchhhHHHHHHHHHHHhcCCCCCCCCCC-CCcchHHHHHHHHHHHHHhhhhhhccHHHHH
Confidence            3467899999999999 4 577889999999999999 7799999874 55689999999999999987655566  999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R  158 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d  158 (361)
                      +++||++||++||||++.+++++|+.+||||+++|.+++..+.                    ++++++++||.++|  |
T Consensus       105 ~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~--------------------i~~~~~~~~l~~~q~~d  164 (287)
T cd02894         105 IAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDL--------------------IDVDKAVDYLLSCYNFD  164 (287)
T ss_pred             HHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcch--------------------hhHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999986432                    37899999999998  9


Q ss_pred             CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchh
Q psy6404         159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKT  236 (361)
Q Consensus       159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~  236 (361)
                      |||.+++++++|+++|||++++|.+++..+.++.+++++||.+||+++|||+..|+.++|..+|||++++|..  .....
T Consensus       165 GGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~  244 (287)
T cd02894         165 GGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWI  244 (287)
T ss_pred             CCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhcccccc
Confidence            9999999999999999999999999998888899999999999999999999999999999999999999853  33346


Q ss_pred             hHHHHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404         237 QIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSIL  276 (361)
Q Consensus       237 ~~~~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L  276 (361)
                      +.+++.+||.++|.   |||++||+|.+|+||+||.+++|.+|
T Consensus       245 ~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~  287 (287)
T cd02894         245 NKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL  287 (287)
T ss_pred             CHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence            78999999999984   99999999999999999999999875

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=1.8e-46  Score=359.93  Aligned_cols=251  Identities=20%  Similarity=0.268  Sum_probs=231.3

Q ss_pred             hhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy6404           6 EAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI   85 (361)
Q Consensus         6 ~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i   85 (361)
                      ++.+||+|.+|++|  +.++.++++++++||++||+++|+|++.+ +.++++..||+|+.+|.+++.++.++++++++||
T Consensus        37 ~~~~y~~l~~L~lL--~~~~~~~~~~~i~~l~~cq~~~GGF~~~~-~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l  113 (316)
T PLN03201         37 MNGAYWGLTALDLL--GKLDDVDRDEVVSWVMRCQHESGGFGGNT-GHDPHILYTLSAVQILALFDRLDLLDADKVASYV  113 (316)
T ss_pred             HHHHHHHHHHHHHh--CCCccccHHHHHHHHHHhcCCCCCcCCCC-CCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            44699999999999  45788899999999999999999999874 5578999999999999999888788999999999


Q ss_pred             HhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404          86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG  163 (361)
Q Consensus        86 ~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~  163 (361)
                      .++|++||||++.+++++|+.+||||++++.+++..+.                    ++++++++||.+||  ||||.+
T Consensus       114 ~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~--------------------i~~~~~~~~i~scq~~dGGF~~  173 (316)
T PLN03201        114 AGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDK--------------------INVEKAVDYIVSCKNFDGGFGC  173 (316)
T ss_pred             HHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccch--------------------hHHHHHHHHHHHhcCCCCCcCC
Confidence            99999999999999999999999999999999986432                    37899999999999  999999


Q ss_pred             CCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHH
Q psy6404         164 RPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESL  241 (361)
Q Consensus       164 ~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l  241 (361)
                      +|++|+|.++|||++++|.+++..+.+|.+++++||.+||+++|||...|+..+|..|||+++++|..  .....|.+++
T Consensus       174 ~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l  253 (316)
T PLN03201        174 TPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKL  253 (316)
T ss_pred             CCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHH
Confidence            99999999999999999999998888899999999999999999999999999999999999999864  3345688999


Q ss_pred             HHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHhhcc
Q psy6404         242 KRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSILNSA  279 (361)
Q Consensus       242 ~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L~~~  279 (361)
                      .+|+.++|.   |||.+||+|.+|.|||||.+++|.+++..
T Consensus       254 ~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~  294 (316)
T PLN03201        254 AKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYP  294 (316)
T ss_pred             HHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCC
Confidence            999999986   99999999999999999999999999863

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.3e-45  Score=350.37  Aligned_cols=252  Identities=26%  Similarity=0.320  Sum_probs=230.0

Q ss_pred             CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhcc-CCCCcccccCCCCCCchhHHHHHHHHHHHhcC--CCcccHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFT-TPCFSFKCTLADGDCDMRFVFCACSICYILDD--WSGMDRA   79 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q-~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~~   79 (361)
                      +.+++.||++|++|++| |..++..+++++++||+++| +++|+|... ++++++++.||+|+.++.+++.  .+.++++
T Consensus        24 ~~~~~~~y~~l~~l~ll-~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~-~~~~~~~~~T~~al~~l~llg~~~~~~~~~~  101 (286)
T cd02890          24 ASRLWLLYWILSSLDLL-GEDLDDENKDEIIDFIYSCQVNEDGGFGGG-PGQDPHLASTYAAVLSLAILGDDALSRIDRE  101 (286)
T ss_pred             hhHHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHhhcCCCCCCCCC-CCCCccHHHHHHHHHHHHHcCccccchhhHH
Confidence            56789999999999999 77789999999999999999 999999987 3567899999999999999997  5678899


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--
Q psy6404          80 RCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--  157 (361)
Q Consensus        80 ~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--  157 (361)
                      ++++||.++|++||||+..++.++|+..||||+++|.+++...                    .++++++++||.++|  
T Consensus       102 ~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--------------------~~~~~~~~~~l~~~Q~~  161 (286)
T cd02890         102 KIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--------------------DIDKEKLIDYILSCQNY  161 (286)
T ss_pred             HHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--------------------hhhHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999742                    237899999999998  


Q ss_pred             CCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCC-CCCCCCCCCCchhhhhhhhhhccc--ccc
Q psy6404         158 RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTG-GLSKWSDTQADILHTYLGEFFVRP--RII  234 (361)
Q Consensus       158 dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dG-Gf~~~p~~~s~~~~T~~ala~L~~--~~~  234 (361)
                      ||||.++|++++|+++|||++++|.+++..+.++++++++||.+||+++| ||+..|+.++|..||||++++|..  ...
T Consensus       162 dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~  241 (286)
T cd02890         162 DGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLH  241 (286)
T ss_pred             CCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccccc
Confidence            99999999999999999999999999998888999999999999999987 999999999999999999999853  333


Q ss_pred             hhhHHHHHHHHHHhh-c--CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404         235 KTQIESLKRWLIFRQ-R--SGFQGRPNKPVDTCYTFWIGASLSIL  276 (361)
Q Consensus       235 ~~~~~~l~~WL~~rQ-~--gGF~GR~nK~~D~CYsfW~~a~L~~L  276 (361)
                      ..+.+++.+||.++| .  |||++||+|.+|.||+||.+++|.++
T Consensus       242 ~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~  286 (286)
T cd02890         242 LIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL  286 (286)
T ss_pred             ccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence            467899999999554 3  99999999999999999999999864

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>KOG0367|consensus

Probab=100.00  E-value=1.4e-45  Score=335.49  Aligned_cols=210  Identities=47%  Similarity=0.789  Sum_probs=198.3

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE   83 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~   83 (361)
                      ++.+.||+++.+|.+| |++++.+||+.++++++.+|+|||+|.....++++||+++|||.+++++|+.++.+|.++++.
T Consensus       103 ~~lA~Ty~sl~~L~~l-GddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~  181 (347)
T KOG0367|consen  103 PHLAMTYTSLACLVIL-GDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIG  181 (347)
T ss_pred             hhHHHHHHHHHHHHHH-cchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHH
Confidence            6889999999999999 999999999999999999999999999988888999999999999999999899999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccc--cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CC
Q psy6404          84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKL--DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RS  159 (361)
Q Consensus        84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~--~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dG  159 (361)
                      ||++||++||||+..|+.|+|+++|||||++|.+++++  +++                .+..+++++++|+.+||  +|
T Consensus       182 yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l----------------~~~~~~erlirWli~RQ~~sg  245 (347)
T KOG0367|consen  182 YIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEEL----------------SNTSKVERLIRWLIQRQVSSG  245 (347)
T ss_pred             HHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhh----------------ccccCHHHHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999986  332                23446899999999999  89


Q ss_pred             ccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         160 GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       160 gF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                      ||+|+++|++|+||+||+.++|.+|+....+|.+...+||++||.. -|||++.|+..||..|||.++++|.
T Consensus       246 GfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~ala  317 (347)
T KOG0367|consen  246 GFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALA  317 (347)
T ss_pred             CcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHH
Confidence            9999999999999999999999999998889999999999999998 5999999999999999999999875

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=1.1e-43  Score=348.88  Aligned_cols=254  Identities=16%  Similarity=0.207  Sum_probs=228.8

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRAR   80 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~   80 (361)
                      .-++.|||+|++|++| |++++..+|+++++||++||+++|||++.+ +.+++++.||+|+.+|.+|+.   ++.+++++
T Consensus        70 ~r~~~~Yw~L~sL~lL-g~~l~~~~~~~ii~~l~~cQ~~dGGFgg~p-g~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~  147 (439)
T PLN02710         70 NRPWLCYWILHSIALL-GESLDDELENDTIDFLSRCQDPNGGYGGGP-GQLPHLATTYAAVNTLVTIGGERALSSINREK  147 (439)
T ss_pred             hhHHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHhcCCCcCCCCCC-CCCccHHHHHHHHHHHHHcCCchhhcccCHHH
Confidence            4578999999999999 777889999999999999999999999984 668999999999999999984   56789999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R  158 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d  158 (361)
                      +++||++||++||||+..+++|+|+++||||++++.+++.++.                    .+.+++++||.+||  |
T Consensus       148 l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~--------------------~~~e~~~~~I~scQ~~d  207 (439)
T PLN02710        148 LYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDD--------------------ELVKGVGDYILSCQTYE  207 (439)
T ss_pred             HHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCch--------------------hhHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999987432                    36789999999999  9


Q ss_pred             CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccc--
Q psy6404         159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RII--  234 (361)
Q Consensus       159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~--  234 (361)
                      |||.++|++|+|++||||++++|.+|+..+.+|.+++++||.+||+.+|||+..|+..+|+.|+|+.+++|..  .+.  
T Consensus       208 GGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~  287 (439)
T PLN02710        208 GGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTI  287 (439)
T ss_pred             CCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999888999999999999999999999999999999999999988742  110  


Q ss_pred             ---------------------------------------------------------hhhHHHHHHHHHHhhc---CCCC
Q psy6404         235 ---------------------------------------------------------KTQIESLKRWLIFRQR---SGFQ  254 (361)
Q Consensus       235 ---------------------------------------------------------~~~~~~l~~WL~~rQ~---gGF~  254 (361)
                                                                               -.+.+.|.+|+..-|.   |||.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~  367 (439)
T PLN02710        288 VDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLR  367 (439)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcC
Confidence                                                                     0245688899977643   9999


Q ss_pred             CCCCCCCcccccchHHHHHHHhhcc
Q psy6404         255 GRPNKPVDTCYTFWIGASLSILNSA  279 (361)
Q Consensus       255 GR~nK~~D~CYsfW~~a~L~~L~~~  279 (361)
                      -+|+|.+|..=+++.++.|.+++-.
T Consensus       368 DkPgk~~D~YHT~y~LsGLSl~q~~  392 (439)
T PLN02710        368 DKPGKSRDYYHTCYCLSGLSVAQYS  392 (439)
T ss_pred             CCCCCCCchhHHHHHHHHHHHHhhc
Confidence            9999999998899999999999853

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.5e-43  Score=337.49  Aligned_cols=250  Identities=23%  Similarity=0.289  Sum_probs=226.4

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRAR   80 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~   80 (361)
                      ..++.|||+|++|++| |.+++.++|+++++||+++|+++|+|.+. ++++++++.||+|+.+|.+|+.   ++.+++++
T Consensus        25 ~~~~~~y~~l~~l~lL-~~~~~~~~~~~~i~~i~~~q~~~GgF~~~-~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~  102 (299)
T cd02893          25 SRPWLLYWILHSLELL-GEELDQSYADDVISFLRRCQNPSGGFGGG-PGQLPHLATTYAAVNALAIIGTEEAYDVIDREA  102 (299)
T ss_pred             ccHHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHhcCCCCCCCCC-CCCCccHHHHHHHHHHHHHhCCchhhhHhhHHH
Confidence            4679999999999999 76688889999999999999999999997 4568999999999999999986   45678999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R  158 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d  158 (361)
                      +++||.+||++||||+..++.|+|++.||||++++.+|+..+                    ..+++++++||.+||  |
T Consensus       103 ~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~--------------------~~~~~~~~~~l~~cQ~~d  162 (299)
T cd02893         103 LYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILT--------------------DELFEGVAEYILSCQTYE  162 (299)
T ss_pred             HHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCc--------------------hhhHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999998643                    236789999999999  9


Q ss_pred             CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhccc--c---
Q psy6404         159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVRP--R---  232 (361)
Q Consensus       159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~~--~---  232 (361)
                      |||.++|++|+|+++|||++++|.+|+..+.+|.+++++||++||++ +|||...|+..+|..|||+.+++|..  .   
T Consensus       163 GGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~  242 (299)
T cd02893         163 GGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILN  242 (299)
T ss_pred             CCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988889999999999999998 99999999999999999999998753  1   


Q ss_pred             ----------cchhhHHHHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHH
Q psy6404         233 ----------IIKTQIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSI  275 (361)
Q Consensus       233 ----------~~~~~~~~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~  275 (361)
                                ....+.+++.+||..+|.   |||+.+|+|.+|..=++..+++|.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl  298 (299)
T cd02893         243 AEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI  298 (299)
T ss_pred             ccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence                      123578999999997654   9999999999998888888888765

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-42  Score=314.71  Aligned_cols=207  Identities=36%  Similarity=0.610  Sum_probs=193.5

Q ss_pred             CCchhHHHHHHHHHHccCC--CCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPP--GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRAR   80 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g--~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~   80 (361)
                      ++|.+.|++||++|.++ +  +.++.++|+.+.+||..+|+|||+|.+... ++.|.+++|.|++++++|+.++.++.+.
T Consensus       101 ~~hL~sT~~Ai~~L~~~-d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~-gevDtr~~Y~al~ilsllg~~~~~~~e~  178 (342)
T COG5029         101 DSHLASTVFAIQSLAML-DSLDVLSRIDRDSLASFISGLKNPDGSFRSDLE-GEVDTRFLYIALSILSLLGDLDKELFEG  178 (342)
T ss_pred             chhHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHhccCCCCceecccC-CcchHHHHHHHHHHHHHHhhcchhhhHH
Confidence            57899999999999999 4  345677888999999999999999999864 6899999999999999999888899999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R  158 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d  158 (361)
                      .++||++|||.|||||..|+.|+|.++||||+++|++|+.++.+                   .+.+++++||..||  .
T Consensus       179 ~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~l-------------------s~~E~l~~Wl~~RQ~ss  239 (342)
T COG5029         179 AVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKL-------------------SDVEKLIRWLAERQLSS  239 (342)
T ss_pred             HHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccccc-------------------chHHHHHHHHHHccccc
Confidence            99999999999999999999999999999999999999998764                   13789999999999  9


Q ss_pred             CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                      |||.||++|.+|+||+||+.++|.|++....+|.+++.+||+.||.. .|||+..|+.++|.+||.+++++|.
T Consensus       240 gGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLs  312 (342)
T COG5029         240 GGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLS  312 (342)
T ss_pred             CCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988 8999999999999999999999885

>KOG0366|consensus

Probab=100.00  E-value=4.8e-40  Score=294.62  Aligned_cols=205  Identities=30%  Similarity=0.567  Sum_probs=194.9

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE   83 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~   83 (361)
                      +++-.|..||++|.+.  +.++.+||+++..|++.+|++||+|.+. ..++-|++++|||++.|++|+..+.++.+++++
T Consensus        93 ~hll~TlsAvQiL~~y--dsi~~~d~d~v~~yi~gLq~edGsF~gD-~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd  169 (329)
T KOG0366|consen   93 PHLLYTLSAVQILALY--DSINVLDRDKVASYIKGLQQEDGSFSGD-IWGEVDTRFSYCAVACLALLGKLDTINVEKAVD  169 (329)
T ss_pred             hHHHHHHHHHHHHHHH--cccccccHHHHHHHHHhhcCcCCcccCC-cccccchhhhHHHHHHHHHHhhHHHhhHHHHHH
Confidence            6778899999999999  8999999999999999999999999987 467899999999999999999888899999999


Q ss_pred             HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcc
Q psy6404          84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGF  161 (361)
Q Consensus        84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF  161 (361)
                      |+++|.|-|||||..|+.|||.+..||++.+|++++.++.+                    |.+.+-.||..||  .||.
T Consensus       170 ~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~v--------------------d~d~lgwwlceRQ~~sGGL  229 (329)
T KOG0366|consen  170 FVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLV--------------------DRDLLGWWLCERQLPSGGL  229 (329)
T ss_pred             HHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhc--------------------CHHHHHHHHHhccCCCCCC
Confidence            99999999999999999999999999999999999997664                    7788889999999  8999


Q ss_pred             ccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccC-CCCCCCCCCCCCCchhhhhhhhhhccc
Q psy6404         162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLGEFFVRP  231 (361)
Q Consensus       162 ~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~-~dGGf~~~p~~~s~~~~T~~ala~L~~  231 (361)
                      .|+|.+.+|+||+||++++|.|++++..+|.+++++||++||. +.|||+..|+.+.|..||+.+||.|+.
T Consensus       230 NGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSL  300 (329)
T KOG0366|consen  230 NGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSL  300 (329)
T ss_pred             CCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhh
Confidence            9999999999999999999999999999999999999999999 579999999999999999999999863

>KOG0365|consensus

Probab=100.00  E-value=2.1e-37  Score=287.03  Aligned_cols=205  Identities=35%  Similarity=0.535  Sum_probs=188.7

Q ss_pred             CchhHHHHHHHHHHccCCC--CCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPG--VLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARC   81 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~--~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~   81 (361)
                      ++.+.||+||++|-++ |.  +++.++|+++.+||.+++.|||||.... +++.|++.+|||+++..+++....+--+.+
T Consensus       147 ~HLA~TYAAVnaL~~~-~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~-~GE~DvRs~YcA~svasllni~~deL~eG~  224 (423)
T KOG0365|consen  147 PHLAPTYAAVNALCLC-GSEDAYSSINREKLYQFLFSLKDPDGGFRMHV-EGEVDVRSAYCALSVASLLNIPMDELFEGT  224 (423)
T ss_pred             hhhhHHHHHHHHHHhc-CcHHHHHHhhHHHHHHHHHHhcCCCCCeEeec-CCcchHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            6899999999999999 53  5788999999999999999999999884 578999999999999999998777778899


Q ss_pred             HHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc---C
Q psy6404          82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---R  158 (361)
Q Consensus        82 i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q---d  158 (361)
                      .+||.+||+.+||||+.|+.|.|+.+||||+++|++|+..+.                    .+.+++.+|..+||   +
T Consensus       225 ~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~--------------------ln~~~Ll~W~~~RQm~~E  284 (423)
T KOG0365|consen  225 LDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQ--------------------LNLEKLLEWAVRRQMRFE  284 (423)
T ss_pred             HHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhh--------------------hCHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999998554                    38899999999998   8


Q ss_pred             CccccCCCCCCCccchhHHHHHHHHhhhh----------ccccHHHHHHHHHh-ccCCCCCCCCCCCCCCchhhhhhhhh
Q psy6404         159 SGFQGRPNKPVDTCYTFWIGASLSILNAA----------TWIDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYLGEF  227 (361)
Q Consensus       159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~----------~~~~~~~~~~~I~s-cQ~~dGGf~~~p~~~s~~~~T~~ala  227 (361)
                      |||+|+.+|.+|.||+||+.+.+.||...          ...|.+++.+||+- ||.++|||...|+...|.+||+++|+
T Consensus       285 ~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLs  364 (423)
T KOG0365|consen  285 GGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLS  364 (423)
T ss_pred             ccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhc
Confidence            99999999999999999999999998653          14788999999985 79999999999999999999999999


Q ss_pred             hcc
Q psy6404         228 FVR  230 (361)
Q Consensus       228 ~L~  230 (361)
                      .|.
T Consensus       365 GLS  367 (423)
T KOG0365|consen  365 GLS  367 (423)
T ss_pred             chh
Confidence            886

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.97  E-value=1e-28  Score=231.10  Aligned_cols=272  Identities=20%  Similarity=0.162  Sum_probs=225.7

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC------CCcccHHHHHHHHHhcCCCCCCCCCCCCC-c
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD------WSGMDRARCLEFIFRSLSYDGAFGQGPCL-E  102 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~-~  102 (361)
                      ++.++||.+.|.++|+|....  ....+..+++++..+..+..      .....++++++||.++|++||||+..++. .
T Consensus         2 ~~~~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~   79 (300)
T cd00688           2 EKHLKYLLRYPYGDGHWYQSL--CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDY   79 (300)
T ss_pred             hhHHHHHHHccccCCCccccC--CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCC
Confidence            578999999999999985542  24567778888877777653      23467899999999999999999998876 7


Q ss_pred             cCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC-------CCCCccc
Q psy6404         103 SHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN-------KPVDTCY  173 (361)
Q Consensus       103 sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~-------~~~D~~~  173 (361)
                      +++..|+.++.+|..++....                 .....++++++||..+|  +|||.....       ...|...
T Consensus        80 ~~~~~T~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~  142 (300)
T cd00688          80 PSLWLTAYALKALLLAGDYIA-----------------VDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRL  142 (300)
T ss_pred             cchHhHHHHHHHHHHcCCccc-----------------cCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccH
Confidence            899999999999999886321                 12347889999999888  899986543       3678999


Q ss_pred             hhHHHHHHHHhhhhc-cccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccccc--chhhHHHHHHHHHHhhc
Q psy6404         174 TFWIGASLSILNAAT-WIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRI--IKTQIESLKRWLIFRQR  250 (361)
Q Consensus       174 ty~a~~~L~ll~~~~-~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~--~~~~~~~l~~WL~~rQ~  250 (361)
                      |++++.+|.+++... ..+.+++++||.++|+.||||  .+..+++...|++++.+|....  ....++++++||.++|.
T Consensus       143 t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~  220 (300)
T cd00688         143 TAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQR  220 (300)
T ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcC
Confidence            999999999998643 457899999999999999999  6777889999999999986432  25678999999999987


Q ss_pred             --CCCCCCC---CCCCcccccchHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         251 --SGFQGRP---NKPVDTCYTFWIGASLSILNSA-TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       251 --gGF~GR~---nK~~D~CYsfW~~a~L~~L~~~-~~~~~~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                        |||....   ++..|+|+++|++.+|..++.. .....+++.+||+..|..+|||...|...+|.+||++++++|.
T Consensus       221 ~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~  298 (300)
T cd00688         221 PDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALS  298 (300)
T ss_pred             CCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHh
Confidence              7887765   8899999999999999998863 2345578999999999999999999999999999999998764

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.94  E-value=6.3e-25  Score=205.45  Aligned_cols=250  Identities=24%  Similarity=0.214  Sum_probs=206.7

Q ss_pred             CchhHHHHHHHHHHccCCCC-----CChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCc
Q psy6404           4 AEEAVLETAVEVLEAVPPGV-----LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSG   75 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~-----l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~   75 (361)
                      ...+.|+.++..|..+ +..     .....+++.++||.+.|++||+|........++++.|++++.+|..++.   ...
T Consensus        25 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~  103 (300)
T cd00688          25 EQTWSTAWPLLALLLL-LAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDR  103 (300)
T ss_pred             CcHHHHHHHHHHHHHh-CCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCH
Confidence            4567899999999988 542     3456789999999999999999988632225789999999999998875   345


Q ss_pred             ccHHHHHHHHHhcCCCCCCCCCCCCC-------ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHH
Q psy6404          76 MDRARCLEFIFRSLSYDGAFGQGPCL-------ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIES  148 (361)
Q Consensus        76 ~~~~~~i~~i~~~q~~dGGF~~~p~~-------~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~  148 (361)
                      ...+++++||.++|++||||......       .++...|++++.+|..++....                   ...+++
T Consensus       104 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~-------------------~~~~~~  164 (300)
T cd00688         104 IDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDP-------------------DPLIEK  164 (300)
T ss_pred             HHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCC-------------------cHHHHH
Confidence            67899999999999999999776543       6788899999999999886321                   236789


Q ss_pred             HHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCC---CCCCchhhhh
Q psy6404         149 LKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWS---DTQADILHTY  223 (361)
Q Consensus       149 ~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p---~~~s~~~~T~  223 (361)
                      +++||.++|  +|||  .++.+.|+..|+|++.+|.+++.......+++++||+++|+.+|||...+   ..+++..+|+
T Consensus       165 ~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~  242 (300)
T cd00688         165 ALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTE  242 (300)
T ss_pred             HHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHH
Confidence            999999887  9999  56778899999999999999986444568899999999999999999765   6678888888


Q ss_pred             hhhhhccccc---chhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHH
Q psy6404         224 LGEFFVRPRI---IKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSI  275 (361)
Q Consensus       224 ~ala~L~~~~---~~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~  275 (361)
                      +++.+|....   .....+++++||.++|.  |||.+++++..|+++++|++.+|..
T Consensus       243 ~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~~  299 (300)
T cd00688         243 WAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSL  299 (300)
T ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence            8888775422   34578899999998775  9999999999999999999988864

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.85  E-value=1.2e-19  Score=176.46  Aligned_cols=258  Identities=15%  Similarity=0.079  Sum_probs=183.2

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC--CCcccHHHHHHHHHhcC--------------CCCC
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD--WSGMDRARCLEFIFRSL--------------SYDG   93 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~~~~i~~i~~~q--------------~~dG   93 (361)
                      ++.++||++.|++||+|+...    +++..|..++..|...+.  ......+++++||.+.|              .++|
T Consensus         2 ~~~~~~L~~~Q~~dG~W~~~~----~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G   77 (348)
T cd02889           2 RRALDFLLSLQAPDGHWPGEY----SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG   77 (348)
T ss_pred             chHHHHHHHhccCCCCccccC----CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence            468999999999999998763    677778877777776664  34567899999999999              6889


Q ss_pred             CCCCCCC--CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccC-CC--
Q psy6404          94 AFGQGPC--LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGR-PN--  166 (361)
Q Consensus        94 GF~~~p~--~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~-~~--  166 (361)
                      ||+....  ..+++..|..++.+|..++..... ...            .....+.++++||.++|  ||||... +.  
T Consensus        78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~-~~~------------~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~  144 (348)
T cd02889          78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPD-GKK------------VSRERLYDAVDWLLSMQNSNGGFAAFEPDNT  144 (348)
T ss_pred             cCcccCcCCCCCCCCChHHHHHHHHHhhccCcc-cch------------hhHHHHHHHHHHHHHhccCCCCEeeecCCcc
Confidence            8775432  234556788888888777754210 000            12346788999999988  9999742 11  


Q ss_pred             ----------------CCCCccchhHHHHHHHHhhhhcc-------ccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhh
Q psy6404         167 ----------------KPVDTCYTFWIGASLSILNAATW-------IDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY  223 (361)
Q Consensus       167 ----------------~~~D~~~ty~a~~~L~ll~~~~~-------~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~  223 (361)
                                      ..++...|..++.+|..++....       ..++++++||+++|++||||....+ ..+...|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta  223 (348)
T cd02889         145 YKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTW  223 (348)
T ss_pred             HHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHH
Confidence                            12345557777777777765422       2357899999999999999964322 23455667


Q ss_pred             hhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHHHHHhhccCcccHHHHH
Q psy6404         224 LGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGASLSILNSATWIDEERLL  288 (361)
Q Consensus       224 ~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~  288 (361)
                      +++.+|..   ......++++++||.++|.  |||.+.+          ...+|++++.|++-+|...+.......++..
T Consensus       224 ~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~  303 (348)
T cd02889         224 FALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGV  303 (348)
T ss_pred             HHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            77777743   1234578899999999987  7876532          2356788888998888777654333446778


Q ss_pred             HHHHhccCCCCCcCCCC
Q psy6404         289 LSVLDTQHMTGGLSKWS  305 (361)
Q Consensus       289 ~~il~~Q~~~GGf~~~p  305 (361)
                      +||..+|+++|||...+
T Consensus       304 ~wL~~~Q~~dG~f~~~~  320 (348)
T cd02889         304 KYLLNTQQEDGDWPQEE  320 (348)
T ss_pred             HHHHHhcCCCCCcCCce
Confidence            99999999999998843

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.84  E-value=1.4e-19  Score=188.29  Aligned_cols=235  Identities=20%  Similarity=0.098  Sum_probs=165.2

Q ss_pred             CchhHHHHHHHHHHccCCCCC--ChhhHHHHHHHHHhccC--------------CCCcccccCC-CCCCchhHHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVL--ALVYRLQISTSLRSFTT--------------PCFSFKCTLA-DGDCDMRFVFCACSI   66 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l--~~~~~~~~~~~L~~~Q~--------------~dG~f~~~~~-~~~~d~~~ty~al~~   66 (361)
                      ..+++|..++++|.-- |..-  .....++..+||++.|.              ++|||+.... .+.++.-.|--+|.+
T Consensus       304 s~~WDTala~~AL~e~-g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~A  382 (634)
T TIGR03463       304 SSEWDTAFAVQALAAT-PETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSA  382 (634)
T ss_pred             CCchhHHHHHHHHHHc-CCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHH
Confidence            4458999999999766 4211  11235789999999984              4688876532 222344444445544


Q ss_pred             HHHhcC--------CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHHH
Q psy6404          67 CYILDD--------WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLAL  117 (361)
Q Consensus        67 l~lL~~--------~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~l  117 (361)
                      +..+..        ......+++++||+++||+||||+....                     ..+++..|..+|.+|..
T Consensus       383 l~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~  462 (634)
T TIGR03463       383 SLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAA  462 (634)
T ss_pred             HHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHH
Confidence            443321        1224577899999999999999985431                     23567789999999988


Q ss_pred             hccccc-cccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHH
Q psy6404         118 MNKLDT-LRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEE  193 (361)
Q Consensus       118 lg~~~~-~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~  193 (361)
                      ++.... .++.++             ...++++++||++.|  ||||.+.++ ..++..|++++.+|..++.. ....++
T Consensus       463 ~~~~~~~~~~~~i-------------~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~  528 (634)
T TIGR03463       463 WRKHHPHVPDGRI-------------TRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQ  528 (634)
T ss_pred             HhhcCcchhhhHH-------------HHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHH
Confidence            875322 111000             235788999999988  999987754 34556688899999887753 345578


Q ss_pred             HHHHHHHhccCCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCC
Q psy6404         194 RLLLSVLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGF  253 (361)
Q Consensus       194 ~~~~~I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF  253 (361)
                      ++++||++||++||||+..          ++.+|+...|++||.+|..  ......+++.++||.++|.  ||+
T Consensus       529 rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W  602 (634)
T TIGR03463       529 RAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRW  602 (634)
T ss_pred             HHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999752          4557889999999999964  2334568999999999997  544

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.82  E-value=1.5e-18  Score=180.65  Aligned_cols=226  Identities=14%  Similarity=-0.044  Sum_probs=160.2

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccC-------------CCCcccccCC-CCCCchhHHHHHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTT-------------PCFSFKCTLA-DGDCDMRFVFCACSICYI   69 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~-------------~dG~f~~~~~-~~~~d~~~ty~al~~l~l   69 (361)
                      +.+++|..++.+|... |-.-+.....+..+||++.|.             +.|||+.... ...+|+..|-.+|.+|..
T Consensus       314 s~vWDTa~ai~AL~~a-g~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~  392 (635)
T TIGR01507       314 SPVWDTALAVLALREA-GLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNG  392 (635)
T ss_pred             CcHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHH
Confidence            4689999999999888 622233457899999999873             2567765422 224677777778877766


Q ss_pred             hcCC----CcccHHHHHHHHHhcCCCCCCCCCCCC-------------------CccCchhhHHHHHHHHHhcccccccc
Q psy6404          70 LDDW----SGMDRARCLEFIFRSLSYDGAFGQGPC-------------------LESHGGSTYCALASLALMNKLDTLRP  126 (361)
Q Consensus        70 L~~~----~~~~~~~~i~~i~~~q~~dGGF~~~p~-------------------~~sh~~~Ty~Al~sL~llg~~~~~~~  126 (361)
                      ++..    .....+++++||+++||+||||+....                   ..+.+..|-.++.+|...+...    
T Consensus       393 ~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~----  468 (635)
T TIGR01507       393 LRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDD----  468 (635)
T ss_pred             cCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCc----
Confidence            6421    134688999999999999999976431                   1234456888888887776421    


Q ss_pred             chhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhcc
Q psy6404         127 TQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQ  203 (361)
Q Consensus       127 ~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ  203 (361)
                                     ....++++++||...|  ||||.++++ ..++..|..++.+|...+.. ....++++++||++||
T Consensus       469 ---------------~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q  532 (635)
T TIGR01507       469 ---------------AWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQ  532 (635)
T ss_pred             ---------------hhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc
Confidence                           1246789999999888  999977654 22333333445555544421 2345789999999999


Q ss_pred             CCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc
Q psy6404         204 HMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR  250 (361)
Q Consensus       204 ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~  250 (361)
                      +.||||+..          +.++++...|.+||.+|..  ......+++.++||.++|.
T Consensus       533 ~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~  591 (635)
T TIGR01507       533 NPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQR  591 (635)
T ss_pred             CCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Confidence            999999853          2246888899999999964  2344578999999999987

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.82  E-value=7.1e-19  Score=183.98  Aligned_cols=236  Identities=14%  Similarity=0.032  Sum_probs=163.1

Q ss_pred             CCchhHHHHHHHHHHccCCCC-CChhhHHHHHHHHHhccC--------------CCCcccccC-CCCCCchhHHHHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGV-LALVYRLQISTSLRSFTT--------------PCFSFKCTL-ADGDCDMRFVFCACSI   66 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~-l~~~~~~~~~~~L~~~Q~--------------~dG~f~~~~-~~~~~d~~~ty~al~~   66 (361)
                      ...+++|..++++|.-. |.. -.....++.++||++.|.              +.|+|+... ....+++..|-.++.+
T Consensus       305 ~s~~wDTala~~AL~~a-g~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~A  383 (634)
T cd02892         305 GSQVWDTALAVQALLEA-GLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKA  383 (634)
T ss_pred             CCchHHHHHHHHHHHHc-CCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence            35689999999999877 532 122346789999999985              356665431 1222444456566666


Q ss_pred             HHHhcCC-------CcccHHHHHHHHHhcCCCCCCCCCCC-C--------------------CccCchhhHHHHHHHHHh
Q psy6404          67 CYILDDW-------SGMDRARCLEFIFRSLSYDGAFGQGP-C--------------------LESHGGSTYCALASLALM  118 (361)
Q Consensus        67 l~lL~~~-------~~~~~~~~i~~i~~~q~~dGGF~~~p-~--------------------~~sh~~~Ty~Al~sL~ll  118 (361)
                      +..++..       .....+++++||+++|++||||+... .                    ..+++..|.++|.+|..+
T Consensus       384 L~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~  463 (634)
T cd02892         384 LLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLF  463 (634)
T ss_pred             HHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHh
Confidence            6555432       22457889999999999999997431 1                    135667899999999998


Q ss_pred             ccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh--ccccHHH
Q psy6404         119 NKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA--TWIDEER  194 (361)
Q Consensus       119 g~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~--~~~~~~~  194 (361)
                      +......+.++             ...++++++||.+.|  ||||.++++ ...+..|++++.+|..++..  ....+++
T Consensus       464 ~~~~~~~r~~i-------------~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~  529 (634)
T cd02892         464 GKLYPGHRREI-------------DPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRK  529 (634)
T ss_pred             cccCcchHHHH-------------HHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHH
Confidence            86422100000             135788999999988  999977653 22333455566777766643  2346789


Q ss_pred             HHHHHHhccCCCCCCCCCC----------CCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCC
Q psy6404         195 LLLSVLDTQHMTGGLSKWS----------DTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGF  253 (361)
Q Consensus       195 ~~~~I~scQ~~dGGf~~~p----------~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF  253 (361)
                      +++||++||+.||||+..+          +.+++...|++||.+|..  ..+...++++++||.++|.  |||
T Consensus       530 a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w  602 (634)
T cd02892         530 ACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDW  602 (634)
T ss_pred             HHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999998532          345788899999999853  2345678999999999987  665

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.80  E-value=4.5e-18  Score=165.38  Aligned_cols=237  Identities=14%  Similarity=0.028  Sum_probs=162.9

Q ss_pred             CchhHHHHHHHHHHccCCC-CCChhhHHHHHHHHHhcc--------------CCCCcccccCCC-CCCchhHHHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPG-VLALVYRLQISTSLRSFT--------------TPCFSFKCTLAD-GDCDMRFVFCACSIC   67 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~-~l~~~~~~~~~~~L~~~Q--------------~~dG~f~~~~~~-~~~d~~~ty~al~~l   67 (361)
                      .++.+|..++..|... |. .-.....++.++||.+.|              .++|+|+..... +..+...|-.++.++
T Consensus        23 ~~~~~Ta~~~~al~~~-g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al  101 (348)
T cd02889          23 SQVWDTALALQALLEA-GLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL  101 (348)
T ss_pred             CchHHHHHHHHHHHHc-CCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHH
Confidence            6788999999999888 54 123345789999999999              688988754221 112332344444444


Q ss_pred             HHhcCC-------CcccHHHHHHHHHhcCCCCCCCCCCCC-------------------CccCchhhHHHHHHHHHhccc
Q psy6404          68 YILDDW-------SGMDRARCLEFIFRSLSYDGAFGQGPC-------------------LESHGGSTYCALASLALMNKL  121 (361)
Q Consensus        68 ~lL~~~-------~~~~~~~~i~~i~~~q~~dGGF~~~p~-------------------~~sh~~~Ty~Al~sL~llg~~  121 (361)
                      ..++..       .....+++++||+++|++||||.....                   ..+++..|.++|.+|..++..
T Consensus       102 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~  181 (348)
T cd02889         102 LRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKL  181 (348)
T ss_pred             HHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhc
Confidence            444432       234578899999999999999975321                   235677899999999988863


Q ss_pred             cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHH
Q psy6404         122 DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLS  198 (361)
Q Consensus       122 ~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~  198 (361)
                      ....+.+       +      .+.++++++||...|  +|||.+..+ ...+..|++++.+|..++.. .....+++++|
T Consensus       182 ~~~~~~~-------~------~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~  247 (348)
T cd02889         182 YPEHRRE-------I------DPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDW  247 (348)
T ss_pred             CCchHHH-------H------HHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence            2210000       0      135678999999877  899975432 22333345566666666542 23457889999


Q ss_pred             HHhccCCCCCCCCC----------CCCCCchhhhhhhhhhcccc--cchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         199 VLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRPR--IIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       199 I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~~--~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      |++||++||||+..          ++..++...|.++|.+|...  .....+++.++||.++|.  |||..
T Consensus       248 L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~  318 (348)
T cd02889         248 LLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ  318 (348)
T ss_pred             HHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence            99999999999853          34457888999999998642  345678899999999887  88866

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>PLN02993 lupeol synthase

Probab=99.79  E-value=6.1e-18  Score=176.66  Aligned_cols=233  Identities=12%  Similarity=0.020  Sum_probs=159.2

Q ss_pred             CCchhHHHHHHHHHHccCCCC-CChhhHHHHHHHHHhccCC---------------CCcccccCC-CCCCchhHHHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGV-LALVYRLQISTSLRSFTTP---------------CFSFKCTLA-DGDCDMRFVFCACS   65 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~-l~~~~~~~~~~~L~~~Q~~---------------dG~f~~~~~-~~~~d~~~ty~al~   65 (361)
                      .+-+|+|..++++|.-- |-. -......+..+||++.|..               .|+|+.... .+.++.-.|--+|.
T Consensus       415 gSqvWDTa~a~qAl~~a-gl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lk  493 (763)
T PLN02993        415 GSQLWDTGFAIQALLAS-DLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALK  493 (763)
T ss_pred             CCchHHHHHHHHHHHHc-CCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHH
Confidence            45689999999999877 521 1233468899999998762               266654422 22234444444444


Q ss_pred             HHHHhcC---------CCcccHHHHHHHHHhcCCCCCCCCCCCCC---------------------ccCchhhHHHHHHH
Q psy6404          66 ICYILDD---------WSGMDRARCLEFIFRSLSYDGAFGQGPCL---------------------ESHGGSTYCALASL  115 (361)
Q Consensus        66 ~l~lL~~---------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~---------------------~sh~~~Ty~Al~sL  115 (361)
                      ++-+|..         .......++++||+++||.||||+.....                     .+.+.-|..+|.+|
T Consensus       494 a~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL  573 (763)
T PLN02993        494 CCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQAL  573 (763)
T ss_pred             HHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHH
Confidence            3223321         12245778999999999999999877411                     23455688899999


Q ss_pred             HHhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc--cc
Q psy6404         116 ALMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT--WI  190 (361)
Q Consensus       116 ~llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~--~~  190 (361)
                      .+++.. ...+..++             ...++++++||.+.|  ||||.|+++ ...+..|++++.+|...+...  ..
T Consensus       574 ~~~~~~~p~~r~~ei-------------~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~  639 (763)
T PLN02993        574 VLFKQLYPDHRTKEI-------------IKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCL  639 (763)
T ss_pred             HHhcccCcchhhhhH-------------HHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcH
Confidence            988752 22111110             235789999999988  999998754 334444666777777666542  24


Q ss_pred             cHHHHHHHHHhccCCCCCCCCCC------------CCCCchhhhhhhhhhcccc----cchhhHHHHHHHHHHhhc
Q psy6404         191 DEERLLLSVLDTQHMTGGLSKWS------------DTQADILHTYLGEFFVRPR----IIKTQIESLKRWLIFRQR  250 (361)
Q Consensus       191 ~~~~~~~~I~scQ~~dGGf~~~p------------~~~s~~~~T~~ala~L~~~----~~~~~~~~l~~WL~~rQ~  250 (361)
                      .++++++||+++|+.||||+...            +..|+...|++|+.+|...    .++..+++.++||+++|.
T Consensus       640 ~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~  715 (763)
T PLN02993        640 AMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQL  715 (763)
T ss_pred             HHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC
Confidence            58999999999999999998642            2458889999999998532    122468899999999997

>PLN03012 Camelliol C synthase

Probab=99.79  E-value=5.9e-18  Score=176.43  Aligned_cols=253  Identities=12%  Similarity=0.009  Sum_probs=165.8

Q ss_pred             CCchhHHHHHHHHHHccCCC-CCChhhHHHHHHHHHhccCC---------------CCcccccCC-CCCCchhHHHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPG-VLALVYRLQISTSLRSFTTP---------------CFSFKCTLA-DGDCDMRFVFCACS   65 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~-~l~~~~~~~~~~~L~~~Q~~---------------dG~f~~~~~-~~~~d~~~ty~al~   65 (361)
                      .+.+++|..++++|.-- |- +-......+..+||++.|..               .|+|+.... .+.++.-.|--+|.
T Consensus       415 gSqvWDTa~~~qAl~~a-gl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lk  493 (759)
T PLN03012        415 GSQLWDSGFALQALLAS-NLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFK  493 (759)
T ss_pred             CCcHHHHHHHHHHHHHc-CCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHH
Confidence            46789999999999766 41 11122367899999998863               255554321 12233333333443


Q ss_pred             H---HHHhcC------CCcccHHHHHHHHHhcCCCCCCCCCCCCC---------------------ccCchhhHHHHHHH
Q psy6404          66 I---CYILDD------WSGMDRARCLEFIFRSLSYDGAFGQGPCL---------------------ESHGGSTYCALASL  115 (361)
Q Consensus        66 ~---l~lL~~------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~---------------------~sh~~~Ty~Al~sL  115 (361)
                      +   +.++..      .......++++||+++||+||||+.....                     .+..--|-.+|.+|
T Consensus       494 a~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL  573 (759)
T PLN03012        494 CCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQAL  573 (759)
T ss_pred             HHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHH
Confidence            2   333321      12245788999999999999999766421                     22334488899999


Q ss_pred             HHhccccc-cccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH---HHHHHHHhhhh--
Q psy6404         116 ALMNKLDT-LRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW---IGASLSILNAA--  187 (361)
Q Consensus       116 ~llg~~~~-~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~---a~~~L~ll~~~--  187 (361)
                      .+++.... .+..++             ...+.++++||++.|  ||||.|+++    +||+|+   |+.+|...+..  
T Consensus       574 ~~f~~~~~~~r~~~i-------------~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~  636 (759)
T PLN03012        574 ILFKQLYPDHRTEEI-------------NAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFN  636 (759)
T ss_pred             HHHhhhCcccchhhh-------------HHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCC
Confidence            98886422 111110             235788999999988  999999886    566665   55556555542  


Q ss_pred             ccccHHHHHHHHHhccCCCCCCCCCC------------CCCCchhhhhhhhhhcccc----cchhhHHHHHHHHHHhhc-
Q psy6404         188 TWIDEERLLLSVLDTQHMTGGLSKWS------------DTQADILHTYLGEFFVRPR----IIKTQIESLKRWLIFRQR-  250 (361)
Q Consensus       188 ~~~~~~~~~~~I~scQ~~dGGf~~~p------------~~~s~~~~T~~ala~L~~~----~~~~~~~~l~~WL~~rQ~-  250 (361)
                      +...++++++||++.|++||||+..-            +..|+...|++|+.+|...    .++..+++.++||+++|. 
T Consensus       637 ~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~  716 (759)
T PLN03012        637 DCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE  716 (759)
T ss_pred             CcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC
Confidence            12457899999999999999999742            2358889999999998532    223468999999999997 


Q ss_pred             -CC-----CCCCCCC---CCcccccc-hHHHHH
Q psy6404         251 -SG-----FQGRPNK---PVDTCYTF-WIGASL  273 (361)
Q Consensus       251 -gG-----F~GR~nK---~~D~CYsf-W~~a~L  273 (361)
                       |+     +.|-.||   +...-|.+ |-+-+|
T Consensus       717 dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~AL  749 (759)
T PLN03012        717 NGDFPQQEATGAFLKNCLLHYAAYRNIFPLWAL  749 (759)
T ss_pred             CCCCCCceeeeeeccceEEecCccchHHHHHHH
Confidence             44     3555555   34444444 334344

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.76  E-value=2.3e-18  Score=140.33  Aligned_cols=107  Identities=22%  Similarity=0.288  Sum_probs=88.9

Q ss_pred             HHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHH--HHHHHHhc--
Q psy6404          82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESL--KRWLIFRQ--  157 (361)
Q Consensus        82 i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~--~~~l~~~Q--  157 (361)
                      |+||+++|++||||+.. +.++++..|++|+.+|..++...                      +.+++  ++||.++|  
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~----------------------~~~~~~~~~~L~~~q~~   57 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP----------------------DRDRAAAVEWLLSQQNP   57 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH----------------------CHHHHHHHHHHHHHB-T
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc----------------------cHHHHHHHHHHHHhCCC
Confidence            68999999999999988 78899999999999999998631                      35666  99999888  


Q ss_pred             CCccccCCC-CCCCccchhHHHHHHHHhhhhcc-ccHHHHHHHHHhccCCCCCCCC
Q psy6404         158 RSGFQGRPN-KPVDTCYTFWIGASLSILNAATW-IDEERLLLSVLDTQHMTGGLSK  211 (361)
Q Consensus       158 dGgF~~~~~-~~~D~~~ty~a~~~L~ll~~~~~-~~~~~~~~~I~scQ~~dGGf~~  211 (361)
                      ||||...+. .++|+..|++++++|.+++.... ..++++++||++||++||||++
T Consensus        58 dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   58 DGGWGSNPDGGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             TSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             CCCccCCCCCCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence            999999884 56899999999999999987653 6688999999999999999974

...

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.76  E-value=6.1e-17  Score=168.40  Aligned_cols=233  Identities=13%  Similarity=0.011  Sum_probs=156.9

Q ss_pred             CCchhHHHHHHHHHHccCCC---CCChhhHHHHHHHHHhccCCC---------------CcccccCC-CCCCchhHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPG---VLALVYRLQISTSLRSFTTPC---------------FSFKCTLA-DGDCDMRFVFCA   63 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~---~l~~~~~~~~~~~L~~~Q~~d---------------G~f~~~~~-~~~~d~~~ty~a   63 (361)
                      .+.+++|..++++|.-- |.   +-......+.++||.+.|..+               |+|+.... .+.+|+..|-.+
T Consensus       293 ~s~vWDTalai~AL~~a-g~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~  371 (621)
T TIGR01787       293 GSQVWDTAFAIQALRES-GDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVV  371 (621)
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHH
Confidence            46789999999999766 52   112235789999999998765               55543321 122355443333


Q ss_pred             HHHHHHhcC----CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHHHh
Q psy6404          64 CSICYILDD----WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLALM  118 (361)
Q Consensus        64 l~~l~lL~~----~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~ll  118 (361)
                      +..+.++..    ......+++++||+++|++||||+....                     ..+....|..+|.+|..+
T Consensus       372 ~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~  451 (621)
T TIGR01787       372 ALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAF  451 (621)
T ss_pred             HHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHh
Confidence            322222221    2234577899999999999999985421                     112335688899988877


Q ss_pred             cccc-ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc--cccHH
Q psy6404         119 NKLD-TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT--WIDEE  193 (361)
Q Consensus       119 g~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~--~~~~~  193 (361)
                      +... .+                  ...++++++||...|  ||+|.++++ ...+..|.+++.+|..++...  ...++
T Consensus       452 ~~r~~~~------------------~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~~~~i~  512 (621)
T TIGR01787       452 GHRADEI------------------RNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRNCPEVQ  512 (621)
T ss_pred             cCccHhH------------------HHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccCCHHHH
Confidence            6311 11                  236789999999887  999987654 222333445666676666432  14478


Q ss_pred             HHHHHHHhccCCCCCCCCCC----------CCCCchhhhhhhhhhcccc--cchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         194 RLLLSVLDTQHMTGGLSKWS----------DTQADILHTYLGEFFVRPR--IIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       194 ~~~~~I~scQ~~dGGf~~~p----------~~~s~~~~T~~ala~L~~~--~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      ++++||+++|+.||||+...          ..+|+...|.+||.+|...  .....+++.++||.++|.  |||.-
T Consensus       513 rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~  588 (621)
T TIGR01787       513 KACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQ  588 (621)
T ss_pred             HHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999998542          2358889999999998632  234468999999999997  66643

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.74  E-value=8.6e-17  Score=141.62  Aligned_cols=253  Identities=16%  Similarity=0.142  Sum_probs=177.7

Q ss_pred             ChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhc-CCCCCCCCCCCCCcc
Q psy6404          25 ALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRS-LSYDGAFGQGPCLES  103 (361)
Q Consensus        25 ~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~-q~~dGGF~~~p~~~s  103 (361)
                      +.++.+++++||..+|+.||||+...+- ...+..||+|+.++.+|+.. ...++++++|+.+. |..            
T Consensus         4 ~~i~l~rvi~fi~~RrhedGGy~f~~~L-pdti~~TyYAi~i~s~lg~e-vPr~EktiefL~d~~qt~------------   69 (274)
T COG1689           4 RYINLNRVIEFIEKRRHEDGGYCFVSQL-PDTINDTYYAIKIYSLLGHE-VPRKEKTIEFLYDQMQTA------------   69 (274)
T ss_pred             hhhhHHHHHHHHHHhhcCCCCeEEeccC-cchhhhhhhhhhhhhhcCCc-CchHHHHHHHHHHHHHHh------------
Confidence            4578999999999999999999876322 22268899999999999864 47799999999882 322            


Q ss_pred             CchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHH-HHHHHH-----Hhc---CCc-cccCCCCCCCccc
Q psy6404         104 HGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIES-LKRWLI-----FRQ---RSG-FQGRPNKPVDTCY  173 (361)
Q Consensus       104 h~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~-~~~~l~-----~~Q---dGg-F~~~~~~~~D~~~  173 (361)
                       +...+.++-.|.+++..+..                     +++ .+.+++     .+-   +|| ..  -....-.+.
T Consensus        70 -~~~~a~~~~~l~~lg~~d~~---------------------r~~~~l~~~~~~~~e~Kf~~~lggs~~--f~t~~~Le~  125 (274)
T COG1689          70 -GVGVAMAIEFLRILGAKDLA---------------------RNKMLLLFLKYNPLEEKFAVGLGGSEE--FGTATPLEA  125 (274)
T ss_pred             -hhHHHHHHHHHHHhcccccc---------------------hhhHHHHHhhcCchhHHHhhhcCceee--cCCCchHHH
Confidence             22345577888888864321                     111 111111     010   333 22  012234788


Q ss_pred             hhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHh-hcCC
Q psy6404         174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFR-QRSG  252 (361)
Q Consensus       174 ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~r-Q~gG  252 (361)
                      |||+..+|.+.|.   .-.|...++|++-|+.+|++....-.++..-.||.|+-.|......   +...+|=..- .-||
T Consensus       126 ty~~~~~l~~~n~---~~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~~---~~v~~Fe~~c~~~Gg  199 (274)
T COG1689         126 TYWMMSALNMVNY---EYLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPK---EEVRHFELCCGDWGG  199 (274)
T ss_pred             HHHHHHHHHHhCc---CchHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccch---HHHHhHHhccccCCC
Confidence            9999999999874   2356678899999999988877766677888999999888643222   2222222111 1199


Q ss_pred             CCCCCCC-CCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC-CCCCChHHHHHHHHHhcc
Q psy6404         253 FQGRPNK-PVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS-DTQADILHTYLEAMSHAS  323 (361)
Q Consensus       253 F~GR~nK-~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p-~~~~D~~hT~~a~~sl~~  323 (361)
                      |+--||. ++..-=+|+....|.+|+...  -..+..+||.+.|+++|||++.- ...+.+..||.|+.+|..
T Consensus       200 f~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~  270 (274)
T COG1689         200 FTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLAS  270 (274)
T ss_pred             cccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHH
Confidence            9999998 444444589999999999862  23578999999999999999875 558999999999887654

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.70  E-value=2.2e-15  Score=157.71  Aligned_cols=281  Identities=15%  Similarity=0.055  Sum_probs=185.4

Q ss_pred             hHHHHHHHHHHccCCCCCChhhHHHHHHHHHhcc--CCCCcccccCCCCCCchhHHHHHHHHHHHhcC--CCcccHHHHH
Q psy6404           7 AVLETAVEVLEAVPPGVLALVYRLQISTSLRSFT--TPCFSFKCTLADGDCDMRFVFCACSICYILDD--WSGMDRARCL   82 (361)
Q Consensus         7 ~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q--~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~~~~i   82 (361)
                      ..+..++.+|..+ |. .+....+++++.+.+..  .++|++....  ..+.++.|-.++.+|.-.+.  ......++++
T Consensus       260 ~~~~l~~lal~~~-g~-~~~~~~~~~l~~l~~~~~~~~~g~~~~~~--~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~  335 (634)
T cd02892         260 PPKANNMLALWVL-GY-PDSPAFKRHLERIDDFLWLGPEGMKMCQT--NGSQVWDTALAVQALLEAGLAPEFDPALKKAL  335 (634)
T ss_pred             hHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcEEEecCCcEEEcC--CCCchHHHHHHHHHHHHcCCCccchHHHHHHH
Confidence            3456677777777 54 45456788888888754  6688765532  23567776666666654442  2234578999


Q ss_pred             HHHHhcCC--------------CCCCCCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhH
Q psy6404          83 EFIFRSLS--------------YDGAFGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQI  146 (361)
Q Consensus        83 ~~i~~~q~--------------~dGGF~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~  146 (361)
                      +||+++|.              +.|||+..  +...+++..|..++.+|..++...... ..            .....+
T Consensus       336 ~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~-~~------------~~~~~i  402 (634)
T cd02892         336 DWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFG-EK------------VSRERL  402 (634)
T ss_pred             HHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcc-hh------------hHHHHH
Confidence            99999995              34665443  333466778888989888887532100 00            123467


Q ss_pred             HHHHHHHHHhc--CCccccC-CC--C------------------CCCccchhHHHHHHHHhhhhcc-------ccHHHHH
Q psy6404         147 ESLKRWLIFRQ--RSGFQGR-PN--K------------------PVDTCYTFWIGASLSILNAATW-------IDEERLL  196 (361)
Q Consensus       147 ~~~~~~l~~~Q--dGgF~~~-~~--~------------------~~D~~~ty~a~~~L~ll~~~~~-------~~~~~~~  196 (361)
                      +++++||.++|  ||||..- +.  +                  .+..-.|..++.+|.+++....       ..+++++
T Consensus       403 ~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv  482 (634)
T cd02892         403 YDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAV  482 (634)
T ss_pred             HHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence            89999999988  9999731 11  0                  1223346677777777765422       2478999


Q ss_pred             HHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc---c-cchhhHHHHHHHHHHhhc--CCCCCCC----------CCC
Q psy6404         197 LSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP---R-IIKTQIESLKRWLIFRQR--SGFQGRP----------NKP  260 (361)
Q Consensus       197 ~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~---~-~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~  260 (361)
                      +||+++|++||||...-+ ....+.|+.++.+|..   . .....+++.++||.++|.  |||...+          ...
T Consensus       483 ~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~  561 (634)
T cd02892         483 KYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGR  561 (634)
T ss_pred             HHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCC
Confidence            999999999999954322 2445678878877753   1 234578899999999997  7875321          123


Q ss_pred             CcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404         261 VDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS  305 (361)
Q Consensus       261 ~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p  305 (361)
                      +++..+-|++-+|...+..+....++..+||+++|.++|||....
T Consensus       562 s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~~  606 (634)
T cd02892         562 STVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQEE  606 (634)
T ss_pred             CcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCcc
Confidence            445666777777766654433334677899999999999997754

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.66  E-value=2.7e-14  Score=148.91  Aligned_cols=276  Identities=14%  Similarity=0.045  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHccCCCCCChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHH
Q psy6404           8 VLETAVEVLEAVPPGVLALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFI   85 (361)
Q Consensus         8 ~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i   85 (361)
                      .+.++|.+|..+ |...+...+.+++++|.+. ...+|++...  ...+.++.|-+++.+|...+. .+....+++.+||
T Consensus       269 ~~~~~l~~l~~~-g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~--~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L  345 (635)
T TIGR01507       269 AMFNALIALKIL-GMTQHDAFIKLGWEGIDLYGVELDDSWMFQ--ACVSPVWDTALAVLALREAGLPADHDALVKAGEWL  345 (635)
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHheEecCCceEec--CCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            678889999999 6556666688899999775 4455665433  224678887777777766552 2234578999999


Q ss_pred             HhcCC-------------CCCCCCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHH
Q psy6404          86 FRSLS-------------YDGAFGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLK  150 (361)
Q Consensus        86 ~~~q~-------------~dGGF~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~  150 (361)
                      +++|-             +.||++..  +...+++.-|-.+|.+|..++..+..                .....+++++
T Consensus       346 ~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~----------------~~~~~i~ra~  409 (635)
T TIGR01507       346 LDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDER----------------RRRDAMTKAF  409 (635)
T ss_pred             HhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccc----------------cchHHHHHHH
Confidence            99972             24665554  44568888999999998777421110                1234788999


Q ss_pred             HHHHHhc--CCccccCC--C----------C----CCCccc---hhHHHHHHHHhhhh-ccccHHHHHHHHHhccCCCCC
Q psy6404         151 RWLIFRQ--RSGFQGRP--N----------K----PVDTCY---TFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTGG  208 (361)
Q Consensus       151 ~~l~~~Q--dGgF~~~~--~----------~----~~D~~~---ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ~~dGG  208 (361)
                      +||..+|  ||||..-.  +          +    -.|-.+   |-.++.+|...+.. ....++++++||++.|++|||
T Consensus       410 ~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~  489 (635)
T TIGR01507       410 RWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGS  489 (635)
T ss_pred             HHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCC
Confidence            9999888  99995411  1          0    012222   32333344333321 123468899999999999999


Q ss_pred             C-CCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHH
Q psy6404         209 L-SKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGAS  272 (361)
Q Consensus       209 f-~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~  272 (361)
                      | +...  ....+.|..++.+|..   ......+++.++||.+.|.  |||....          ...+|.--+.|++.+
T Consensus       490 W~g~wg--~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~A  567 (635)
T TIGR01507       490 WFGRWG--VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIA  567 (635)
T ss_pred             CccCCC--CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHH
Confidence            7 4322  2345567777777742   2234578899999999997  8875321          123555567899999


Q ss_pred             HHHhhccCcccHHHHHHHHHhccCCCCCcCCC
Q psy6404         273 LSILNSATWIDEERLLLSVLDTQHMTGGLSKW  304 (361)
Q Consensus       273 L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~  304 (361)
                      |...+..+-...++..+||+++|+++||+...
T Consensus       568 L~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~  599 (635)
T TIGR01507       568 LIAAGRAESEAARRGVQYLVETQRPDGGWDEP  599 (635)
T ss_pred             HHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence            98877542222357889999999999999775

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.65  E-value=2.1e-14  Score=149.82  Aligned_cols=281  Identities=13%  Similarity=0.044  Sum_probs=181.2

Q ss_pred             HHHHHHHHHccCCCCCChhhHHHHHHHHHhcc--CCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHH
Q psy6404           9 LETAVEVLEAVPPGVLALVYRLQISTSLRSFT--TPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLE   83 (361)
Q Consensus         9 t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q--~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~   83 (361)
                      +..++..|.++ |.+.+....++++++|.+..  .++|+....  ...+..+.|-.++.+|..-+..   .....+++.+
T Consensus       259 ~~~~~~~l~~~-g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q--~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~  335 (634)
T TIGR03463       259 VNGVLNMLAWF-AVNPDGPEVAAHLEGLEDYRYEDDDRGLRYN--GYNSSEWDTAFAVQALAATPETAGRHRRMLERAAR  335 (634)
T ss_pred             HHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhEEEcCCCCEEEe--eCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHH
Confidence            55678888888 76666667899999999865  556333211  1123345555555544333311   1234688999


Q ss_pred             HHHhcCC--------------CCCCCCCCC--CCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHH
Q psy6404          84 FIFRSLS--------------YDGAFGQGP--CLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIE  147 (361)
Q Consensus        84 ~i~~~q~--------------~dGGF~~~p--~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~  147 (361)
                      ||+++|.              +.||++...  ...++...|-.+|.+|..+........+.            .+...+.
T Consensus       336 wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~------------~~~~~l~  403 (634)
T TIGR03463       336 FLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEER------------VPQARLQ  403 (634)
T ss_pred             HHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCccccc------------ccHHHHH
Confidence            9999994              458766553  44566677888888776654311100000            1234678


Q ss_pred             HHHHHHHHhc--CCccccCC---C---------------CCCCccchhHHHHHHHHhhh---hcc--------ccHHHHH
Q psy6404         148 SLKRWLIFRQ--RSGFQGRP---N---------------KPVDTCYTFWIGASLSILNA---ATW--------IDEERLL  196 (361)
Q Consensus       148 ~~~~~l~~~Q--dGgF~~~~---~---------------~~~D~~~ty~a~~~L~ll~~---~~~--------~~~~~~~  196 (361)
                      ++++||+++|  ||||..-+   .               ...|..+..|...++..|..   ...        ..+++++
T Consensus       404 ~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav  483 (634)
T TIGR03463       404 DAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGV  483 (634)
T ss_pred             HHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Confidence            8999999999  99997321   0               11245565565555444433   221        1267899


Q ss_pred             HHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCCC----------CCC
Q psy6404         197 LSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRPN----------KPV  261 (361)
Q Consensus       197 ~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~n----------K~~  261 (361)
                      +||++.|++||||...=+ ....+.|++++.+|..   ......+++.++||.+.|.  ||+.++..          ..+
T Consensus       484 ~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S  562 (634)
T TIGR03463       484 RFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQS  562 (634)
T ss_pred             HHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCC
Confidence            999999999999854322 2234568888888853   2344678999999999987  88866422          234


Q ss_pred             cccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404         262 DTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS  305 (361)
Q Consensus       262 D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p  305 (361)
                      .+.-+.|++.+|...+...-...++..+||++.|.++|||...+
T Consensus       563 ~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~  606 (634)
T TIGR03463       563 QAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP  606 (634)
T ss_pred             cHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence            55567799999988875432334678899999999999998755

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.62  E-value=1.1e-15  Score=124.39  Aligned_cols=107  Identities=25%  Similarity=0.309  Sum_probs=87.5

Q ss_pred             HHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHH--HHHHHhcCCCCCCCCCCC-CCccCchhhH
Q psy6404          33 STSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARC--LEFIFRSLSYDGAFGQGP-CLESHGGSTY  109 (361)
Q Consensus        33 ~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~--i~~i~~~q~~dGGF~~~p-~~~sh~~~Ty  109 (361)
                      ++||+++|++||+|...  +..+++..|++++.+|..++..  .+++++  ++||.++|++||||+..+ +.++++..|+
T Consensus         1 v~~L~~~Q~~dGgw~~~--~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~   76 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF--GGPSDVWDTAFALLALAALGEE--PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTY   76 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS--TS-BEHHHHHHHHHHHHHHTSH--HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC--CCCCCHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHH
Confidence            68999999999999986  4578999999999999998764  358888  999999999999999998 5678899999


Q ss_pred             HHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccc
Q psy6404         110 CALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQ  162 (361)
Q Consensus       110 ~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~  162 (361)
                      +++.+|.+++..+.                   .+.++++++||+++|  ||||.
T Consensus        77 ~~l~~l~~~~~~~~-------------------~~~~~~a~~~l~~~Q~~dGg~~  112 (113)
T PF13249_consen   77 VALAALELLGRPDD-------------------EEAVRKAVDWLLSCQNPDGGWG  112 (113)
T ss_dssp             HHHHHHHHHT-GGC-------------------HTTHCCHHHHHHHTB-TTSSB-
T ss_pred             HHHHHHHHcCCCcc-------------------cHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999987432                   135778999999988  99996

...

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.61  E-value=9.3e-15  Score=128.88  Aligned_cols=193  Identities=14%  Similarity=0.066  Sum_probs=139.6

Q ss_pred             chhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhc-cCCCCccccc----------------------------------
Q psy6404           5 EEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSF-TTPCFSFKCT----------------------------------   49 (361)
Q Consensus         5 ~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~-Q~~dG~f~~~----------------------------------   49 (361)
                      ..++||+||.++.+| |.+++.  +++.++||+++ |...+++...                                  
T Consensus        34 ti~~TyYAi~i~s~l-g~evPr--~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~  110 (274)
T COG1689          34 TINDTYYAIKIYSLL-GHEVPR--KEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFAVG  110 (274)
T ss_pred             hhhhhhhhhhhhhhc-CCcCch--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHhhh
Confidence            369999999999999 887777  99999999983 5543332110                                  


Q ss_pred             C----C-CCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhcccccc
Q psy6404          50 L----A-DGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTL  124 (361)
Q Consensus        50 ~----~-~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~  124 (361)
                      .    . +..+.+..|||...++.+.+.   .-.+++-+||++.|+.+|++.+.--.-++...||.|+-.|...+.    
T Consensus       111 lggs~~f~t~~~Le~ty~~~~~l~~~n~---~~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~----  183 (274)
T COG1689         111 LGGSEEFGTATPLEATYWMMSALNMVNY---EYLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP----  183 (274)
T ss_pred             cCceeecCCCchHHHHHHHHHHHHHhCc---CchHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc----
Confidence            0    0 122458899999999988873   225678888889999988765543333445566666554443332    


Q ss_pred             ccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc-CCccccCCCC-CCCccchhHHHHHHHHhhhhccccHHHHHHHHHhc
Q psy6404         125 RPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ-RSGFQGRPNK-PVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT  202 (361)
Q Consensus       125 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q-dGgF~~~~~~-~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~sc  202 (361)
                                           .+....|-..|- +|||...|++ +.-+.-||.|..+|.+|+..  --+...++||.+-
T Consensus       184 ---------------------~~~v~~Fe~~c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~sl  240 (274)
T COG1689         184 ---------------------KEEVRHFELCCGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSL  240 (274)
T ss_pred             ---------------------hHHHHhHHhccccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHh
Confidence                                 222333433455 8999999876 46778899999999999864  4467789999999


Q ss_pred             cCCCCCCCCC-CCCCCchhhhhhhhhhcc
Q psy6404         203 QHMTGGLSKW-SDTQADILHTYLGEFFVR  230 (361)
Q Consensus       203 Q~~dGGf~~~-p~~~s~~~~T~~ala~L~  230 (361)
                      ||.+|||..+ -.+.|..-.||.||++|.
T Consensus       241 qN~nGGFRRS~~~GISt~e~tYrAl~~L~  269 (274)
T COG1689         241 QNQNGGFRRSYELGISTFENTYRALASLA  269 (274)
T ss_pred             hcCCCCeeeeEeccccchHHHHHHHHHHH
Confidence            9999999875 456677889999999874

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.61  E-value=1.1e-13  Score=144.07  Aligned_cols=272  Identities=15%  Similarity=0.040  Sum_probs=174.4

Q ss_pred             HHHHHHccCCCCCChhhHHHHHHHHHhc--cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC----CCcccHHHHHHHH
Q psy6404          12 AVEVLEAVPPGVLALVYRLQISTSLRSF--TTPCFSFKCTLADGDCDMRFVFCACSICYILDD----WSGMDRARCLEFI   85 (361)
Q Consensus        12 al~~L~~L~g~~l~~~~~~~~~~~L~~~--Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~----~~~~~~~~~i~~i   85 (361)
                      ++.+|..+ |.. +....+++++.|++.  ..+||.+...   ..+.++.|-+++.++..-+.    ......+++++||
T Consensus       254 ~~~al~~~-g~~-d~p~~~~~l~~l~~~~~~~~dg~~~q~---~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL  328 (621)
T TIGR01787       254 AMLALWFL-DGP-NSPAFQKHLQRIDDYLWLQLDGMKMQG---TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWL  328 (621)
T ss_pred             HHHHHHHc-CCC-CCHHHHHHHHHHhhcEEEeCCccEEec---CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHH
Confidence            66668888 544 555688999999886  5677766433   24667777666666644341    1234578999999


Q ss_pred             HhcCCCC---------------CCCCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHH
Q psy6404          86 FRSLSYD---------------GAFGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIES  148 (361)
Q Consensus        86 ~~~q~~d---------------GGF~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~  148 (361)
                      +++|..+               ||++..  ..+.+++.-|-.++.++.++...+..                ..+..+++
T Consensus       329 ~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~----------------~~~~~l~~  392 (621)
T TIGR01787       329 LLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEH----------------VKRDRLRD  392 (621)
T ss_pred             HHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCccc----------------ccHHHHHH
Confidence            9999877               554332  22334555566655444443321111                13446788


Q ss_pred             HHHHHHHhc--CCccccCC-C---------------CC--CCcc---chhHHHHHHHHhhhh---ccccHHHHHHHHHhc
Q psy6404         149 LKRWLIFRQ--RSGFQGRP-N---------------KP--VDTC---YTFWIGASLSILNAA---TWIDEERLLLSVLDT  202 (361)
Q Consensus       149 ~~~~l~~~Q--dGgF~~~~-~---------------~~--~D~~---~ty~a~~~L~ll~~~---~~~~~~~~~~~I~sc  202 (361)
                      +++||.+.|  ||||..-. .               .+  .|..   .|-.++.+|..++..   -...++++++||+++
T Consensus       393 a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~  472 (621)
T TIGR01787       393 AVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRRE  472 (621)
T ss_pred             HHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHh
Confidence            999999988  99997321 1               11  1222   355566666555421   123578999999999


Q ss_pred             cCCCCCCCCCCCCCCchhhhhhhhhhccc--cc--chhhHHHHHHHHHHhhc--CCCCCCCC----------CCCccccc
Q psy6404         203 QHMTGGLSKWSDTQADILHTYLGEFFVRP--RI--IKTQIESLKRWLIFRQR--SGFQGRPN----------KPVDTCYT  266 (361)
Q Consensus       203 Q~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~--~~~~~~~l~~WL~~rQ~--gGF~GR~n----------K~~D~CYs  266 (361)
                      |++||+|...-+. ...+.|.+++.+|..  ..  ....+++.++||.+.|.  |||.....          ..+|+..+
T Consensus       473 Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~T  551 (621)
T TIGR01787       473 QRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQT  551 (621)
T ss_pred             cCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHH
Confidence            9999998543221 223346667666642  11  12568899999999986  88754321          24677888


Q ss_pred             chHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404         267 FWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS  305 (361)
Q Consensus       267 fW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p  305 (361)
                      .|++.+|...+...-...++..+||+++|+++|||...+
T Consensus       552 a~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~  590 (621)
T TIGR01787       552 GWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEY  590 (621)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence            999998887765332234678899999999999997754

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>PLN03012 Camelliol C synthase

Probab=99.59  E-value=2.4e-14  Score=149.64  Aligned_cols=190  Identities=14%  Similarity=0.051  Sum_probs=132.8

Q ss_pred             CchhHHHHHHHH---HHccC----CCCCChhhHHHHHHHHHhccCCCCcccccCCCC--------------------CCc
Q psy6404           4 AEEAVLETAVEV---LEAVP----PGVLALVYRLQISTSLRSFTTPCFSFKCTLADG--------------------DCD   56 (361)
Q Consensus         4 ~~~~~t~~al~~---L~~L~----g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~--------------------~~d   56 (361)
                      +++-+|..+|.+   |.+++    |+.++.....+.++||.++|++||||+......                    .+-
T Consensus       483 p~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y  562 (759)
T PLN03012        483 QASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEY  562 (759)
T ss_pred             CCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCc
Confidence            456677777765   34331    122333345678999999999999997652110                    011


Q ss_pred             hhHHHHHHHHHHHhcCCC--------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccch
Q psy6404          57 MRFVFCACSICYILDDWS--------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQ  128 (361)
Q Consensus        57 ~~~ty~al~~l~lL~~~~--------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~  128 (361)
                      .-.|-.+|.+|.+++...        ....+++++||++.|++||||.+.-+ ......|++||.+|...|....     
T Consensus       563 ~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wg-v~y~YgT~~aL~aL~a~g~~~~-----  636 (759)
T PLN03012        563 NECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWG-ICFTYGTWFALAGLAAAGKTFN-----  636 (759)
T ss_pred             ccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccc-ccCCcHHHHHHHHHHHhCccCC-----
Confidence            112444556666655321        23477899999999999999987543 3456789999999999886321     


Q ss_pred             hhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC------------CCCCccchhHHHHHHHHhhhhcc--ccH
Q psy6404         129 ASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN------------KPVDTCYTFWIGASLSILNAATW--IDE  192 (361)
Q Consensus       129 ~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~------------~~~D~~~ty~a~~~L~ll~~~~~--~~~  192 (361)
                                   ....++++++||+++|  ||||.++..            +.+....|.||+.+|...+....  ..+
T Consensus       637 -------------~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i  703 (759)
T PLN03012        637 -------------DCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPL  703 (759)
T ss_pred             -------------CcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHH
Confidence                         1236889999999988  999987532            23556779999999988876432  357


Q ss_pred             HHHHHHHHhccCCCCCCCCC
Q psy6404         193 ERLLLSVLDTQHMTGGLSKW  212 (361)
Q Consensus       193 ~~~~~~I~scQ~~dGGf~~~  212 (361)
                      +++++||++.|.+||+|-+.
T Consensus       704 ~Rg~~~Ll~~Q~~dG~W~q~  723 (759)
T PLN03012        704 HRAAKLIINSQLENGDFPQQ  723 (759)
T ss_pred             HHHHHHHHHcccCCCCCCCc
Confidence            99999999999999999753

>PLN02993 lupeol synthase

Probab=99.57  E-value=7e-14  Score=146.46  Aligned_cols=189  Identities=13%  Similarity=0.055  Sum_probs=131.1

Q ss_pred             CchhHHHHHHHHHHcc---CC----CCCChhhHHHHHHHHHhccCCCCcccccCCCC-----------------CCchhH
Q psy6404           4 AEEAVLETAVEVLEAV---PP----GVLALVYRLQISTSLRSFTTPCFSFKCTLADG-----------------DCDMRF   59 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L---~g----~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~-----------------~~d~~~   59 (361)
                      +++-+|..+|.++-+|   +.    +.++.....+.++||.++|+.||||+......                 --|...
T Consensus       483 p~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~  562 (763)
T PLN02993        483 QVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREY  562 (763)
T ss_pred             CcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCC
Confidence            4566788887754333   11    22233345678999999999999998753111                 012223


Q ss_pred             ---HHHHHHHHHHhcCCC--------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccch
Q psy6404          60 ---VFCACSICYILDDWS--------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQ  128 (361)
Q Consensus        60 ---ty~al~~l~lL~~~~--------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~  128 (361)
                         |-.++.+|.+++...        ....+++++||++.|++||||.+. .+......|++||.+|...|....     
T Consensus       563 ~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~-----  636 (763)
T PLN02993        563 VECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYN-----  636 (763)
T ss_pred             cCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCC-----
Confidence               334455555554211        134688999999999999999763 555677889999999998887322     


Q ss_pred             hhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC------------CCCCccchhHHHHHHHHhhhhcc--ccH
Q psy6404         129 ASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN------------KPVDTCYTFWIGASLSILNAATW--IDE  192 (361)
Q Consensus       129 ~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~------------~~~D~~~ty~a~~~L~ll~~~~~--~~~  192 (361)
                                   ..+.++++++||+++|  ||||..+..            +.+....|.||+.+|...|....  ..+
T Consensus       637 -------------~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l  703 (763)
T PLN02993        637 -------------DCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPL  703 (763)
T ss_pred             -------------CcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHH
Confidence                         1246899999999988  999976421            23455678899999988875322  347


Q ss_pred             HHHHHHHHhccCCCCCCCC
Q psy6404         193 ERLLLSVLDTQHMTGGLSK  211 (361)
Q Consensus       193 ~~~~~~I~scQ~~dGGf~~  211 (361)
                      +++++||++.|..+|+|-+
T Consensus       704 ~Rgi~~L~~~Q~~~G~W~q  722 (763)
T PLN02993        704 HRAAKLIITSQLENGDFPQ  722 (763)
T ss_pred             HHHHHHHHhccCCCCCCCC
Confidence            8999999999999999854

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.41  E-value=8.6e-12  Score=119.22  Aligned_cols=198  Identities=12%  Similarity=0.059  Sum_probs=131.4

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCCC-------
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQGP-------   99 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~p-------   99 (361)
                      ++.++.+.+.|++||+|+.. .+...+++.|-+++..|.....   .+....+++++||.+.|++||+|...-       
T Consensus        55 ~~g~~r~l~~q~~dGsf~~w-~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          55 RQGYQRQLSYRKPDGSYAAW-KNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHhccCCCCCccCC-CCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            34455666789999999766 3446788888888888876653   233457889999999999999997642       


Q ss_pred             -C----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccch
Q psy6404         100 -C----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYT  174 (361)
Q Consensus       100 -~----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~t  174 (361)
                       +    .++++..|-+++.+|.-.+........             -....++++++||...++.           +...
T Consensus       134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~-------------~~~~~i~rA~~yL~~~~~~-----------~~~~  189 (297)
T cd02896         134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQ-------------NLDQSIRKAISYLENQLPN-----------LQRP  189 (297)
T ss_pred             cCCccccCCCccchHHHHHHHHhhhccccccch-------------hhHHHHHHHHHHHHHhccc-----------CCCh
Confidence             1    124666777777777666542110000             0123678899999976532           2233


Q ss_pred             hH---HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCC--------CC-C--CCchhhhhhhhhhcccccchhhHHH
Q psy6404         175 FW---IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKW--------SD-T--QADILHTYLGEFFVRPRIIKTQIES  240 (361)
Q Consensus       175 y~---a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~--------p~-~--~s~~~~T~~ala~L~~~~~~~~~~~  240 (361)
                      |-   +.-+|.+.+.   ...+++.++|++.|+.|||++..        ++ .  ..+.-.|.+||.++..........+
T Consensus       190 Y~~Al~ayALal~~~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~~~a~~  266 (297)
T cd02896         190 YALAITAYALALADS---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDIEYANP  266 (297)
T ss_pred             HHHHHHHHHHHHcCC---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCchhHHH
Confidence            32   3334444442   35678999999999999998742        11 1  1256688999888754333446778


Q ss_pred             HHHHHHHhhc--CCCCC
Q psy6404         241 LKRWLIFRQR--SGFQG  255 (361)
Q Consensus       241 l~~WL~~rQ~--gGF~G  255 (361)
                      .++||.++|.  |||..
T Consensus       267 iv~WL~~qr~~~Ggf~s  283 (297)
T cd02896         267 IARWLTEQRNYGGGFGS  283 (297)
T ss_pred             HHHHHHhcCCCCCCeeh
Confidence            9999998776  77764

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.36  E-value=8.4e-11  Score=112.05  Aligned_cols=202  Identities=12%  Similarity=0.043  Sum_probs=128.0

Q ss_pred             CChhhHHHHHHHHH-------hccCCCCcccccCCC-CCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCC
Q psy6404          24 LALVYRLQISTSLR-------SFTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYD   92 (361)
Q Consensus        24 l~~~~~~~~~~~L~-------~~Q~~dG~f~~~~~~-~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~d   92 (361)
                      ++...+++.++||+       +.|++||+|+..... ..++++.|.+++..|.....   ......+++++||.+.|++|
T Consensus        39 ~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d  118 (292)
T cd02897          39 LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN  118 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC
Confidence            44444677777776       489999999765222 25688888888887776553   22345788999999999999


Q ss_pred             CCCCCCC---------CCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCcccc
Q psy6404          93 GAFGQGP---------CLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQG  163 (361)
Q Consensus        93 GGF~~~p---------~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~  163 (361)
                      |||+...         +..+++..|-.++.+|...+..+ .                  .+.++++++||...++.    
T Consensus       119 G~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~-~------------------~~~i~~a~~yL~~~~~~----  175 (292)
T cd02897         119 GCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS-E------------------RPVVEKALSCLEAALDS----  175 (292)
T ss_pred             CCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc-c------------------cHHHHHHHHHHHHhccc----
Confidence            9998531         12344667888888887777521 1                  23578899999875521    


Q ss_pred             CCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHh---ccCCCCCCCCCC----------C-CCCchhhhhhhhhhc
Q psy6404         164 RPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLD---TQHMTGGLSKWS----------D-TQADILHTYLGEFFV  229 (361)
Q Consensus       164 ~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~s---cQ~~dGGf~~~p----------~-~~s~~~~T~~ala~L  229 (361)
                          ..++..+..+..+|.+.+.   ...+++.+.+..   .++.+|+|+..|          . ..++.-.|.++|.+|
T Consensus       176 ----~~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlal  248 (292)
T cd02897         176 ----ISDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLAL  248 (292)
T ss_pred             ----CCCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHH
Confidence                1223333345556666552   234455555443   455566666421          1 224667788998887


Q ss_pred             cccc--chhhHHHHHHHHHHhhc--CCCCC
Q psy6404         230 RPRI--IKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       230 ~~~~--~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      ....  ......+.++||.+.|.  |||..
T Consensus       249 l~~~~~~~~~~~~~v~WL~~~q~~~Ggf~s  278 (292)
T cd02897         249 LSAGGEDLAEALPIVKWLAKQRNSLGGFSS  278 (292)
T ss_pred             HHcCCccHhHHHHHHHHHHHcCCCCCCccc
Confidence            5322  23456778889998775  56643

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.22  E-value=1.5e-09  Score=103.44  Aligned_cols=224  Identities=13%  Similarity=0.050  Sum_probs=124.6

Q ss_pred             HHHHHHHHhcCCCcccHHHHHHHHH-------hcCCCCCCCCCCCCC--ccCchhhHHHHHHHHHhccccccccchhhhh
Q psy6404          62 CACSICYILDDWSGMDRARCLEFIF-------RSLSYDGAFGQGPCL--ESHGGSTYCALASLALMNKLDTLRPTQASLY  132 (361)
Q Consensus        62 ~al~~l~lL~~~~~~~~~~~i~~i~-------~~q~~dGGF~~~p~~--~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~  132 (361)
                      .++.-+...+.++...++++++||.       ++|++||||+..+..  .++...|.+++.+|........         
T Consensus        28 ~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~---------   98 (292)
T cd02897          28 YVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIY---------   98 (292)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCC---------
Confidence            3333333333344444555555555       699999999876543  6778889999888877664212         


Q ss_pred             HhhhhhhcCChHhHHHHHHHHHHhc--CCccccCC---------CCCCCccchhHHHHHHHHhhhhc-cccHHHHHHHHH
Q psy6404         133 LDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRP---------NKPVDTCYTFWIGASLSILNAAT-WIDEERLLLSVL  200 (361)
Q Consensus       133 l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~---------~~~~D~~~ty~a~~~L~ll~~~~-~~~~~~~~~~I~  200 (361)
                              .+...++++++||.++|  ||||....         +.+.+...|-+++.+|...+... ...++++++||.
T Consensus        99 --------v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~  170 (292)
T cd02897          99 --------IDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLE  170 (292)
T ss_pred             --------CCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence                    23457899999999887  99997421         11122334556666666555421 234689999999


Q ss_pred             hccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhc----CCCCCCC-----------C-CCCccc
Q psy6404         201 DTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR----SGFQGRP-----------N-KPVDTC  264 (361)
Q Consensus       201 scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~----gGF~GR~-----------n-K~~D~C  264 (361)
                      +.+..          ..+...+..+..+|.... ....++++++|.+.+.    .|+-+..           + ...|+-
T Consensus       171 ~~~~~----------~~~~y~~al~a~AL~~~~-~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve  239 (292)
T cd02897         171 AALDS----------ISDPYTLALAAYALTLAG-SEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVE  239 (292)
T ss_pred             Hhccc----------CCCHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHH
Confidence            98764          123334443333442211 1234566666665432    1221111           0 011111


Q ss_pred             ccchHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         265 YTFWIGASLSILNSA--TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       265 YsfW~~a~L~~L~~~--~~~~~~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                      =+=|++  |.++...  ......+..+||.++|+..|||+..       --|..|+.+|.
T Consensus       240 ~TAyaL--lall~~~~~~~~~~~~~v~WL~~~q~~~Ggf~sT-------Qdt~~al~AL~  290 (292)
T cd02897         240 MTAYAL--LALLSAGGEDLAEALPIVKWLAKQRNSLGGFSST-------QDTVVALQALA  290 (292)
T ss_pred             HHHHHH--HHHHHcCCccHhHHHHHHHHHHHcCCCCCCcccH-------HHHHHHHHHHH
Confidence            111222  2333332  2222245677999999999999875       35666665553

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>KOG0497|consensus

Probab=99.22  E-value=2.5e-10  Score=115.97  Aligned_cols=226  Identities=16%  Similarity=0.095  Sum_probs=152.3

Q ss_pred             CchhHHHHHHHHHHccCCCCCChh--hHHHHHHHHHhccC---CCCcc------------cccCCCCC---CchhHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALV--YRLQISTSLRSFTT---PCFSF------------KCTLADGD---CDMRFVFCA   63 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~--~~~~~~~~L~~~Q~---~dG~f------------~~~~~~~~---~d~~~ty~a   63 (361)
                      .-+|+|.+||+.|..- +.+ +..  ...+..+||++-|.   |.|.+            ..+...+.   +|  .|-=+
T Consensus       415 sQ~Wdt~falqalla~-~~~-~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsD--ctaEa  490 (760)
T KOG0497|consen  415 SQLWDTAFALQALLAA-GLV-DEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSD--CTAEA  490 (760)
T ss_pred             hhHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeecc--ccHHH
Confidence            3478999999998877 433 222  35678999999774   33322            21110000   12  12223


Q ss_pred             HHHHHHhcC---------CCcccHHHHHHHHHhcCCCCCCCCCCCCC---------------------ccCchhhHHHHH
Q psy6404          64 CSICYILDD---------WSGMDRARCLEFIFRSLSYDGAFGQGPCL---------------------ESHGGSTYCALA  113 (361)
Q Consensus        64 l~~l~lL~~---------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~---------------------~sh~~~Ty~Al~  113 (361)
                      +..+-+++.         .+.+..-++++.|+++|+.+|||....-.                     +..+--|.++|+
T Consensus       491 l~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~  570 (760)
T KOG0497|consen  491 LKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQ  570 (760)
T ss_pred             HHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHH
Confidence            344444431         23345566888999999999999765210                     123456899999


Q ss_pred             HHHHhcccc-ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH---HHHHHHHhhhh
Q psy6404         114 SLALMNKLD-TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW---IGASLSILNAA  187 (361)
Q Consensus       114 sL~llg~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~---a~~~L~ll~~~  187 (361)
                      +|....+.. ..|+.++             +..+++++.||.+.|  ||+|.|+++    +|+||-   ++.+|...|+.
T Consensus       571 aL~~F~k~~p~~r~~Ei-------------~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkt  633 (760)
T KOG0497|consen  571 ALVYFHKLFPGHRKKEI-------------EKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKT  633 (760)
T ss_pred             HHHhhcccCccHHHHHH-------------HHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchh
Confidence            999888742 2333222             235678999999888  999999987    899885   55555555543


Q ss_pred             --ccccHHHHHHHHHhccCCCCCCCCCC------------CCCCchhhhhhhhhhccc----ccchhhHHHHHHHHHHhh
Q psy6404         188 --TWIDEERLLLSVLDTQHMTGGLSKWS------------DTQADILHTYLGEFFVRP----RIIKTQIESLKRWLIFRQ  249 (361)
Q Consensus       188 --~~~~~~~~~~~I~scQ~~dGGf~~~p------------~~~s~~~~T~~ala~L~~----~~~~~~~~~l~~WL~~rQ  249 (361)
                        ....++++++||++-|+.|||||..+            +..++...|..|+.+|..    .-++..++++++.|.+.|
T Consensus       634 y~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ  713 (760)
T KOG0497|consen  634 YENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQ  713 (760)
T ss_pred             hhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcc
Confidence              23557899999999999999999764            335788899999999853    233446889999999998


Q ss_pred             c
Q psy6404         250 R  250 (361)
Q Consensus       250 ~  250 (361)
                      .
T Consensus       714 ~  714 (760)
T KOG0497|consen  714 L  714 (760)
T ss_pred             c
Confidence            7

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.16  E-value=1.5e-09  Score=103.83  Aligned_cols=207  Identities=13%  Similarity=0.020  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ  157 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q  157 (361)
                      .++.++.++++|++||||+..+...++...|.+++.+|........+                 +...+++.++||..+|
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v-----------------~~~~l~~a~~wL~~~Q  116 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPV-----------------DQNVICGSVNWLISNQ  116 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHhcC
Confidence            56677888999999999998877778888888999998877653222                 3346789999999888


Q ss_pred             --CCccccCC--------CC----CCCccchhHHHHHHHHhhhhc-------cccHHHHHHHHHhccCCCCCCCCCCCCC
Q psy6404         158 --RSGFQGRP--------NK----PVDTCYTFWIGASLSILNAAT-------WIDEERLLLSVLDTQHMTGGLSKWSDTQ  216 (361)
Q Consensus       158 --dGgF~~~~--------~~----~~D~~~ty~a~~~L~ll~~~~-------~~~~~~~~~~I~scQ~~dGGf~~~p~~~  216 (361)
                        ||+|....        ++    +.++..|-+++.+|.-.+...       ...++++++||.++|..-      ... 
T Consensus       117 ~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~------~~~-  189 (297)
T cd02896         117 KPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNL------QRP-  189 (297)
T ss_pred             CCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccC------CCh-
Confidence              99998542        01    234555656666665544321       124688999999988641      000 


Q ss_pred             CchhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCCCCCC-----------CCcccccchHHHHHHHhhccCccc
Q psy6404         217 ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPNK-----------PVDTCYTFWIGASLSILNSATWID  283 (361)
Q Consensus       217 s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK-----------~~D~CYsfW~~a~L~~L~~~~~~~  283 (361)
                      -....+.+|++...    .....+..+||.++|.  +|......+           ..++-=+=|  +-|.++.......
T Consensus       190 Y~~Al~ayALal~~----~~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAY--ALLall~~~~~~~  263 (297)
T cd02896         190 YALAITAYALALAD----SPLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAY--ALLALLKLGDIEY  263 (297)
T ss_pred             HHHHHHHHHHHHcC----ChhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHH--HHHHHHhcCCchh
Confidence            01122223332221    1256788999998875  444332211           111111112  2233444333334


Q ss_pred             HHHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHh
Q psy6404         284 EERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSH  321 (361)
Q Consensus       284 ~~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl  321 (361)
                      ...+.+||.+.|+..|||+..       --|..|+-+|
T Consensus       264 a~~iv~WL~~qr~~~Ggf~sT-------QdTvval~AL  294 (297)
T cd02896         264 ANPIARWLTEQRNYGGGFGST-------QDTVVALQAL  294 (297)
T ss_pred             HHHHHHHHHhcCCCCCCeehH-------HHHHHHHHHH
Confidence            467899999999999999874       3466665444

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.15  E-value=4.8e-11  Score=81.01  Aligned_cols=44  Identities=39%  Similarity=0.662  Sum_probs=42.0

Q ss_pred             ccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhc
Q psy6404          76 MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMN  119 (361)
Q Consensus        76 ~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg  119 (361)
                      ++++++++||++||++||||+..|+.++|+.+||+|+++|.++|
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999999999999986

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.07  E-value=1.2e-10  Score=79.09  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             ccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         190 IDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       190 ~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                      +|++++++||++||++||||+..|+.++|..+||||+++|.
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~   41 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALS   41 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999985

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=98.95  E-value=6.2e-10  Score=90.07  Aligned_cols=100  Identities=15%  Similarity=0.071  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhh
Q psy6404         147 ESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY  223 (361)
Q Consensus       147 ~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~  223 (361)
                      +++++||...|  ||||.+...  .|...|++++.+|..++.. ....++++++||+++|++||||+..+..  +...|.
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~--~~~~t~   77 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGE--YVSMTA   77 (109)
T ss_dssp             -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred             cccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCC--CHHHHH
Confidence            56789999877  999986633  5678888988888888753 2345799999999999999999988433  344555


Q ss_pred             hhhhhccc---ccchhhHHHHHHHHHHhhc
Q psy6404         224 LGEFFVRP---RIIKTQIESLKRWLIFRQR  250 (361)
Q Consensus       224 ~ala~L~~---~~~~~~~~~l~~WL~~rQ~  250 (361)
                      .++.+|..   ......+++.++||..+|.
T Consensus        78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   78 AAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            55555432   2245678999999998863

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=98.90  E-value=2.1e-09  Score=86.90  Aligned_cols=104  Identities=17%  Similarity=0.149  Sum_probs=38.4

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhh
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGST  108 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~T  108 (361)
                      +++++||.+.|++||+|....   +.+...+++++..+..++. ......+++++||+++|++||||+..+.  .+...|
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~~---~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t   76 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYNW---GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT   76 (109)
T ss_dssp             ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred             ccccccccccccccccccccc---cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence            578999999999999997652   2456677777777777663 2345679999999999999999997733  234566


Q ss_pred             HHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404         109 YCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ  157 (361)
Q Consensus       109 y~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q  157 (361)
                      ..++.+|.+.+...                   ..+.+++.++||.+.|
T Consensus        77 ~~~~~~l~~~~~~~-------------------~~~~~~r~~~wi~~~~  106 (109)
T PF13243_consen   77 AAAIAALALAGVYP-------------------DDEAVERGLEWILSHQ  106 (109)
T ss_dssp             HHHHHHHHHHHTT---------------------HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhCCCC-------------------CCHHHHHHHHHHHHcc
Confidence            66677775554421                   1246789999998765

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=98.83  E-value=2.5e-07  Score=87.26  Aligned_cols=189  Identities=14%  Similarity=0.062  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCCCC-----
Q psy6404          29 RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQGPC-----  100 (361)
Q Consensus        29 ~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~p~-----  100 (361)
                      .++.+++|.++|++||||+.......++++.|.+++..|.....   ....-.+++++||.+.|++||+|.....     
T Consensus        51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~  130 (282)
T cd02891          51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE  130 (282)
T ss_pred             HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence            45678999999999999987643336788888888888876543   2223488899999999999999976432     


Q ss_pred             ----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccchhH
Q psy6404         101 ----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW  176 (361)
Q Consensus       101 ----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~ty~  176 (361)
                          ..+....|.+++.+|...+...                    ...+.++++||....+.        ..+.-....
T Consensus       131 ~~~~~~~~~~~tA~al~~L~~~g~~~--------------------~~~~~~a~~~L~~~~~~--------~~~~~~~a~  182 (282)
T cd02891         131 MKGGVDDSVSLTAYVLIALAEAGKAC--------------------DASIEKALAYLETQLDG--------LLDPYALAI  182 (282)
T ss_pred             hcCCcCCCcchHHHHHHHHHHhcccc--------------------hHHHHHHHHHHHHhccc--------CCChHHHHH
Confidence                1234456777877777766521                    12567888998865421        112222223


Q ss_pred             HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCC-------CCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHH
Q psy6404         177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK-------WSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIF  247 (361)
Q Consensus       177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~-------~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~  247 (361)
                      +..+|.+++.  ....+++.+-|.......++...       ..+.....-.|..++.+..........+++++||.+
T Consensus       183 la~al~~~g~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~~~~~~~~~~~~L~~  258 (282)
T cd02891         183 LAYALALAGD--STRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLGDLEEAGPIAKWLAQ  258 (282)
T ss_pred             HHHHHHHcCc--cHHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence            4455555553  12234455555554433332211       111112223444444443221133467789999998

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.72  E-value=2e-07  Score=86.84  Aligned_cols=197  Identities=17%  Similarity=0.175  Sum_probs=119.4

Q ss_pred             HHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCC---cccHHHHHHHHHhcCCCCCCCCCCCCC--------
Q psy6404          33 STSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWS---GMDRARCLEFIFRSLSYDGAFGQGPCL--------  101 (361)
Q Consensus        33 ~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~---~~~~~~~i~~i~~~q~~dGGF~~~p~~--------  101 (361)
                      .+-+.+.|++||||..+..+..+.++.|-+.+..+.......   ....+++++||.+.|++||.|......        
T Consensus         3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~   82 (246)
T PF07678_consen    3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG   82 (246)
T ss_dssp             HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred             hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence            344567789999999872234688999999998888776542   334788999999999999999653211        


Q ss_pred             -ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccchhH-HHH
Q psy6404         102 -ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW-IGA  179 (361)
Q Consensus       102 -~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~ty~-a~~  179 (361)
                       ...+..|-+.+.+|.-.+.....   ...          .....++++++||....           ....-.|- |+.
T Consensus        83 ~~~~~~lTA~VliAL~e~~~~~~~---~~~----------~~~~~i~kA~~~L~~~~-----------~~~~~~Y~lAl~  138 (246)
T PF07678_consen   83 VEDDIALTAYVLIALLEAGSLCDS---EKP----------EYENAINKALNYLERHL-----------DNIQDPYTLALV  138 (246)
T ss_dssp             GTHHHHHHHHHHHHHHHCHCCHTT---THH----------CHHHHHHHHHHHHHHHH-----------GCTSSHHHHHHH
T ss_pred             CCCCeeehHHHHHHHHhhhhhccc---cch----------hhHHHHHHHHHHHHHhc-----------cccCCHHHHHHH
Confidence             11233444444444333321000   000          01246788999997531           11223342 333


Q ss_pred             H--HHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC--------------CchhhhhhhhhhcccccchhhHHHHHH
Q psy6404         180 S--LSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ--------------ADILHTYLGEFFVRPRIIKTQIESLKR  243 (361)
Q Consensus       180 ~--L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~--------------s~~~~T~~ala~L~~~~~~~~~~~l~~  243 (361)
                      +  |.+.+  +....+.+.+-|.+....+||....+...              .+.-.|.+||.++...........+++
T Consensus       139 aYAL~la~--~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~~~~~~iv~  216 (246)
T PF07678_consen  139 AYALALAG--DSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDLEEASPIVR  216 (246)
T ss_dssp             HHHHHHTT--TCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhhc--ccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            3  33333  34566778889999888887775433222              134567888877654444557788999


Q ss_pred             HHHHhhc--CCCCC
Q psy6404         244 WLIFRQR--SGFQG  255 (361)
Q Consensus       244 WL~~rQ~--gGF~G  255 (361)
                      ||.++|.  |||..
T Consensus       217 WL~~qr~~~Ggf~S  230 (246)
T PF07678_consen  217 WLISQRNSGGGFGS  230 (246)
T ss_dssp             HHHHCTTTTSSTSS
T ss_pred             HHHHhcCCCCccCc
Confidence            9998764  78765

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=98.71  E-value=1.5e-06  Score=81.82  Aligned_cols=112  Identities=13%  Similarity=0.035  Sum_probs=81.5

Q ss_pred             cHHHHHHHHHhcCCCCCCCCCCCCC-ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH
Q psy6404          77 DRARCLEFIFRSLSYDGAFGQGPCL-ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF  155 (361)
Q Consensus        77 ~~~~~i~~i~~~q~~dGGF~~~p~~-~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~  155 (361)
                      ..++.+++|.++|++||||+..++. .++...|.+++..|...+....+                 ....++++++||..
T Consensus        50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v-----------------~~~~i~ra~~~L~~  112 (282)
T cd02891          50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDV-----------------DENVLARALGWLVP  112 (282)
T ss_pred             HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHh
Confidence            3677999999999999999999877 78899999998888776553221                 23457899999998


Q ss_pred             hc--CCccccCCC---------CCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC
Q psy6404         156 RQ--RSGFQGRPN---------KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM  205 (361)
Q Consensus       156 ~Q--dGgF~~~~~---------~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~  205 (361)
                      .|  +|+|.....         ...+...|-+++.+|...+.......+++++||.+....
T Consensus       113 ~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~  173 (282)
T cd02891         113 QQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG  173 (282)
T ss_pred             ccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc
Confidence            87  898876432         123344566666666655543334578899999987753

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0497|consensus

Probab=98.26  E-value=1.1e-05  Score=82.84  Aligned_cols=169  Identities=15%  Similarity=0.109  Sum_probs=116.3

Q ss_pred             ChhhHHHH---HHHHHhccCCCCcccccCC---------------CC-----CCchhHHHHHHHHHHHhcCC-C------
Q psy6404          25 ALVYRLQI---STSLRSFTTPCFSFKCTLA---------------DG-----DCDMRFVFCACSICYILDDW-S------   74 (361)
Q Consensus        25 ~~~~~~~~---~~~L~~~Q~~dG~f~~~~~---------------~~-----~~d~~~ty~al~~l~lL~~~-~------   74 (361)
                      ..++.+++   ++.|..+|..+|+|...-+               .+     ++-+..|-.++.+|...+.. .      
T Consensus       507 ~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~E  586 (760)
T KOG0497|consen  507 EKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKE  586 (760)
T ss_pred             CCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHH
Confidence            34566665   5557789999998865311               00     12233344455555444321 1      


Q ss_pred             -cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHH
Q psy6404          75 -GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWL  153 (361)
Q Consensus        75 -~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l  153 (361)
                       .....++++||.+.|.+||++-++-+- --...|++|+..|...|+--.                  .-..+++++.|+
T Consensus       587 i~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa~~gl~aaGkty~------------------nc~~irka~~Fl  647 (760)
T KOG0497|consen  587 IEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFALRGLAAAGKTYE------------------NCEAIRKACDFL  647 (760)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHhcchhhhcchhhh------------------ccHHHHHHHHHH
Confidence             123667899999999999988665331 234578889999988887211                  123678999999


Q ss_pred             HHhc--CCccccCC------------CCCCCccchhHHHHHHHHhhhhcc--ccHHHHHHHHHhccCCCCCCCCC
Q psy6404         154 IFRQ--RSGFQGRP------------NKPVDTCYTFWIGASLSILNAATW--IDEERLLLSVLDTQHMTGGLSKW  212 (361)
Q Consensus       154 ~~~Q--dGgF~~~~------------~~~~D~~~ty~a~~~L~ll~~~~~--~~~~~~~~~I~scQ~~dGGf~~~  212 (361)
                      .+.|  +|||..+.            +..+.+-.|.||+.+|-+.+..+.  ....+++..|.+.|-.+|-|.+.
T Consensus       648 l~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq  722 (760)
T KOG0497|consen  648 LSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ  722 (760)
T ss_pred             HhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence            9988  99997542            123566779999999999987643  36789999999999999998764

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.18  E-value=3.3e-05  Score=71.88  Aligned_cols=207  Identities=13%  Similarity=0.023  Sum_probs=111.4

Q ss_pred             HHHHHHhcCCCCCCCCCC-CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--
Q psy6404          81 CLEFIFRSLSYDGAFGQG-PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--  157 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~-p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--  157 (361)
                      ..+-+++.|++||||+.+ ...+++...|-+++..|....+.-.                 ++...+.++++||..+|  
T Consensus         2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~-----------------vd~~~i~~a~~wL~~~Q~~   64 (246)
T PF07678_consen    2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIF-----------------VDENVICRAVKWLISQQQP   64 (246)
T ss_dssp             HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS------------------CEHHHHHHHHHHHHHHBET
T ss_pred             chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhc-----------------CCHHHHHHHHHHHHHhhcC
Confidence            345678899999999999 6677888999999998887766422                 24457899999999888  


Q ss_pred             CCccccCCC---C------CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCCCCCCCCCCCCCCchhh
Q psy6404         158 RSGFQGRPN---K------PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILH  221 (361)
Q Consensus       158 dGgF~~~~~---~------~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~  221 (361)
                      ||+|.....   .      +.++..|-.++.+|.-.+..       ....++++++||.+....      .... -....
T Consensus        65 dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~------~~~~-Y~lAl  137 (246)
T PF07678_consen   65 DGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN------IQDP-YTLAL  137 (246)
T ss_dssp             TSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC------TSSH-HHHHH
T ss_pred             CCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc------cCCH-HHHHH
Confidence            999975321   1      11222232233333222211       123467899999876211      0000 01111


Q ss_pred             hhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCCCCCCC---Cccccc-ch--------HHHHHHHhhccCcccHHHH
Q psy6404         222 TYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPNKP---VDTCYT-FW--------IGASLSILNSATWIDEERL  287 (361)
Q Consensus       222 T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK~---~D~CYs-fW--------~~a~L~~L~~~~~~~~~~~  287 (361)
                      +.+|++...   +......+..-|.++..  +|...-....   ...-+. ++        .++-|.++......+...+
T Consensus       138 ~aYAL~la~---~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~~~~~~i  214 (246)
T PF07678_consen  138 VAYALALAG---DSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDLEEASPI  214 (246)
T ss_dssp             HHHHHHHTT---TCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhhc---ccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            222322221   33455666777766543  4432211111   110000 11        1223444444332333578


Q ss_pred             HHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHh
Q psy6404         288 LLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSH  321 (361)
Q Consensus       288 ~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl  321 (361)
                      .+||.+.|+..|||+..       --|..|+-+|
T Consensus       215 v~WL~~qr~~~Ggf~ST-------QdTvvaL~AL  241 (246)
T PF07678_consen  215 VRWLISQRNSGGGFGST-------QDTVVALQAL  241 (246)
T ss_dssp             HHHHHHCTTTTSSTSSH-------HHHHHHHHHH
T ss_pred             HHHHHHhcCCCCccCcH-------HHHHHHHHHH
Confidence            89999888899999874       3456665444

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=97.77  E-value=4.8e-05  Score=76.90  Aligned_cols=190  Identities=17%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             ccCCCCcccccCCC-CCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCch-----------
Q psy6404          39 FTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG-----------  106 (361)
Q Consensus        39 ~Q~~dG~f~~~~~~-~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~-----------  106 (361)
                      .+...|+|...... ..+|...  ++-.+..+....+..+-++.++||..+|+..|||...+....|..           
T Consensus       245 ~~~~~g~W~f~~~~~~ypd~d~--T~~~~~al~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~  322 (517)
T COG1657         245 RKFSPGGWGFSNINTGYPDADD--TAGVVRALIGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKA  322 (517)
T ss_pred             cccCCCccceeecccCCCCchh--hhHHHHHHHhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccc
Confidence            34446777654322 1233322  222333333444456677799999999999999987753222211           


Q ss_pred             --------hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH
Q psy6404         107 --------STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW  176 (361)
Q Consensus       107 --------~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~  176 (361)
                              -|...+..|..++...+-                -....+++++.||++.|  +|.|.++++    .|++|-
T Consensus       323 ~~~~s~adct~~~~~~l~a~~~yl~~----------------~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~  382 (517)
T COG1657         323 MVDPSTADCTHRVVLALAALNAYLEA----------------YDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYG  382 (517)
T ss_pred             cccCCcccCCCccHHHHhhhhhcccc----------------ccCCcccHHHhhhhhhccccCceeeEEE----EEEEEe
Confidence                    111122222222221110                00235788999999887  999988876    788887


Q ss_pred             HHHHHHHhhhhccc-----cHHHHHHHHHhccCCCCCCCCCCCCCCch----------hhhhhhhhhccc--ccchhhHH
Q psy6404         177 IGASLSILNAATWI-----DEERLLLSVLDTQHMTGGLSKWSDTQADI----------LHTYLGEFFVRP--RIIKTQIE  239 (361)
Q Consensus       177 a~~~L~ll~~~~~~-----~~~~~~~~I~scQ~~dGGf~~~p~~~s~~----------~~T~~ala~L~~--~~~~~~~~  239 (361)
                      ...++..+......     -+.+++.|+.+||+++|||+..-...++.          ..|..|+..+..  ......++
T Consensus       383 ~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~  462 (517)
T COG1657         383 TSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIK  462 (517)
T ss_pred             hhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhc
Confidence            77766666544333     35789999999999999999753322222          234445444432  12333467


Q ss_pred             HHHHHHHHhhc
Q psy6404         240 SLKRWLIFRQR  250 (361)
Q Consensus       240 ~l~~WL~~rQ~  250 (361)
                      ..++.+.++|.
T Consensus       463 ~~~~~~~~~~~  473 (517)
T COG1657         463 PGINLLVSDQE  473 (517)
T ss_pred             ccccccccCcC
Confidence            77888888876

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=97.49  E-value=0.00034  Score=70.81  Aligned_cols=187  Identities=16%  Similarity=0.089  Sum_probs=114.7

Q ss_pred             chhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCC------------------CchhHHHHHHHH
Q psy6404           5 EEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGD------------------CDMRFVFCACSI   66 (361)
Q Consensus         5 ~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~------------------~d~~~ty~al~~   66 (361)
                      +...|..++..+...  ..++.  -+..++||..+|+..|+|....+...                  +-...+-..+..
T Consensus       263 d~d~T~~~~~al~~~--~~~~~--~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~  338 (517)
T COG1657         263 DADDTAGVVRALIGV--QSLPN--FELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLA  338 (517)
T ss_pred             CchhhhHHHHHHHhh--cchhh--HHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHH
Confidence            445566666666666  43443  45599999999999998877532100                  000111111122


Q ss_pred             HHHhcCC-C---cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCC
Q psy6404          67 CYILDDW-S---GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY  142 (361)
Q Consensus        67 l~lL~~~-~---~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~  142 (361)
                      +..++.+ +   ....+++++|+++.|.++|.+-+. .+.--+..|..++.++...+..+..                  
T Consensus       339 l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~-w~v~~iY~~s~a~~~l~~~g~~~~~------------------  399 (517)
T COG1657         339 LAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGR-WGVCYIYGTSGALSALALVGETDEN------------------  399 (517)
T ss_pred             HhhhhhccccccCCcccHHHhhhhhhccccCceeeE-EEEEEEEehhhhhhhhhccCccccc------------------
Confidence            2222221 1   345889999999999999975442 2222356677788888888874421                  


Q ss_pred             hHhHHHHHHHHHHhc--CCccccCCCCCCCccc----------hhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCC
Q psy6404         143 SPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCY----------TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS  210 (361)
Q Consensus       143 ~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~----------ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~  210 (361)
                      ..-+.+++.|+..+|  +|||.......++..+          +-||...+-.....+...+++.++++.+.|.++|-++
T Consensus       400 ~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~  479 (517)
T COG1657         400 EVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWR  479 (517)
T ss_pred             hHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccc
Confidence            124678899999988  9999875443322222          3355555444333333346778999999999999888


Q ss_pred             CCCC
Q psy6404         211 KWSD  214 (361)
Q Consensus       211 ~~p~  214 (361)
                      ..+.
T Consensus       480 ~~~~  483 (517)
T COG1657         480 EAER  483 (517)
T ss_pred             ccee
Confidence            6554

>PLN02592 ent-copalyl diphosphate synthase

Probab=96.49  E-value=0.13  Score=55.54  Aligned_cols=107  Identities=19%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404         199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN  277 (361)
Q Consensus       199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~  277 (361)
                      +...|..+|+|..+|.      .|.+++.--       .-+++.++|.+-..-.=.|-|+- +.|.--.-|++-+|.-||
T Consensus       258 v~~~q~~~GS~~~SPS------aTAaaL~~~-------~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLG  324 (800)
T PLN02592        258 LLKLQCQDGSFLFSPS------STAFALMQT-------KDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLG  324 (800)
T ss_pred             HhcccCCCCCccCCch------HHHHHHhcc-------CchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcC
Confidence            5667888999999984      566665421       23566777755322111357766 566544459999999999


Q ss_pred             ccCcccH--HHHHHHHHhccCCCC-CcCCCCCCCCChHHHHHHHH
Q psy6404         278 SATWIDE--ERLLLSVLDTQHMTG-GLSKWSDTQADILHTYLEAM  319 (361)
Q Consensus       278 ~~~~~~~--~~~~~~il~~Q~~~G-Gf~~~p~~~~D~~hT~~a~~  319 (361)
                      -...+..  +.+.++|..+=...| |+.. +...+|++.|.++..
T Consensus       325 Is~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFR  368 (800)
T PLN02592        325 ISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFR  368 (800)
T ss_pred             CccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHH
Confidence            7643333  245555544211112 3322 123679999999854

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=96.26  E-value=0.072  Score=50.53  Aligned_cols=90  Identities=14%  Similarity=0.065  Sum_probs=58.6

Q ss_pred             CCCchhHHHHHHHHHHcc---CCCCCChhhHHHHHHHHHhccCCCCcccccCCCC--------CCchhHHHHHHHHHHHh
Q psy6404           2 STAEEAVLETAVEVLEAV---PPGVLALVYRLQISTSLRSFTTPCFSFKCTLADG--------DCDMRFVFCACSICYIL   70 (361)
Q Consensus         2 ~~~~~~~t~~al~~L~~L---~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~--------~~d~~~ty~al~~l~lL   70 (361)
                      +|=|-..|+..+.-|.-+   .++..-..-..+.++||.+.|.++|||+...+..        .+|..++    .++.+|
T Consensus        39 ~TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~----~vl~lL  114 (290)
T TIGR02474        39 GTIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMV----NVLTLL  114 (290)
T ss_pred             ccccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHH----HHHHHH
Confidence            456677899999888877   2232223345788999999999999998764311        1343332    333333


Q ss_pred             cC-------CC----------cccHHHHHHHHHhcCCCCCCC
Q psy6404          71 DD-------WS----------GMDRARCLEFIFRSLSYDGAF   95 (361)
Q Consensus        71 ~~-------~~----------~~~~~~~i~~i~~~q~~dGGF   95 (361)
                      ..       +.          ..-.+++++||+++|-++||.
T Consensus       115 ~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~  156 (290)
T TIGR02474       115 DDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK  156 (290)
T ss_pred             HHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            21       10          123678999999999988864

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN02279 ent-kaur-16-ene synthase

Probab=96.12  E-value=0.21  Score=53.89  Aligned_cols=102  Identities=16%  Similarity=0.073  Sum_probs=63.6

Q ss_pred             HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404         199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN  277 (361)
Q Consensus       199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~  277 (361)
                      |+..|..||.|..+|.      .|.+++.--.       -+++.++|.+-+.-.=.|.|+- +.|....-|++.+|.-+|
T Consensus       218 v~~~q~~~Gs~~~SPs------aTAa~l~~~~-------~~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlG  284 (784)
T PLN02279        218 VMKYQRKNGSLFNSPS------TTAAAFSHLQ-------NAGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLG  284 (784)
T ss_pred             HHhhcCCCCCcccCcH------HHHHHHHccC-------ChHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhC
Confidence            5677999999999884      5666554211       2567778754332111367776 777766669999999999


Q ss_pred             ccCcccH--HHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHH
Q psy6404         278 SATWIDE--ERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEA  318 (361)
Q Consensus       278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~  318 (361)
                      ....+..  +...+.+..+-. .|    .++..+|++.|.++.
T Consensus       285 i~~hF~~EI~~~L~~~~~~~~-~~----~~~~~~Dl~~tAl~F  322 (784)
T PLN02279        285 IDRHFRKEIKSVLDETYRYWL-QG----EEEIFLDLATCALAF  322 (784)
T ss_pred             CccccHHHHHHHHHHHHHhhc-cc----ccCCCCCHHHHHHHH
Confidence            7644433  234444433222 12    234468999999884

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=95.95  E-value=0.029  Score=53.17  Aligned_cols=101  Identities=9%  Similarity=-0.020  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhc-----CCCcccHHHHHHHHHhcCCCCCCCCCCCC----CccCchh-hHHHHHHHHHhccc----ccc
Q psy6404          59 FVFCACSICYILD-----DWSGMDRARCLEFIFRSLSYDGAFGQGPC----LESHGGS-TYCALASLALMNKL----DTL  124 (361)
Q Consensus        59 ~ty~al~~l~lL~-----~~~~~~~~~~i~~i~~~q~~dGGF~~~p~----~~sh~~~-Ty~Al~sL~llg~~----~~~  124 (361)
                      .|+..+.-|.-+-     .....-..++++||++.|+++|||...-.    ...|+.. =...+.+|.+|...    +..
T Consensus        45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~  124 (290)
T TIGR02474        45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF  124 (290)
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence            3555555444332     11234577899999999999999977631    1222221 01133444444321    110


Q ss_pred             ccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC
Q psy6404         125 RPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN  166 (361)
Q Consensus       125 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~  166 (361)
                      ...+.. ..+.      -...+++.++||+..|  +||+.+.+.
T Consensus       125 ~~~~~~-~~~r------~~~Ai~Rgid~ILktQ~~~gg~~t~Wg  161 (290)
T TIGR02474       125 DVFPDS-TRTR------AKTAVTKGIECILKTQVVQNGKLTVWC  161 (290)
T ss_pred             ccccHH-HHHH------HHHHHHHHHHHHHHhhcccCCcCCchh
Confidence            000000 0000      0235688999999999  888776654

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins

Probab=91.67  E-value=12  Score=39.66  Aligned_cols=94  Identities=19%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCL   82 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i   82 (361)
                      ..|+..+|+|+.+|+.| |...++  .+.+++++++.-.+          ..+++...|+++.+...|+.... -..++.
T Consensus        46 ~~dLes~yyav~glk~L-g~~~~~--~~~~C~~~~~~~~~----------s~~~~e~lfya~~~~~~L~C~~~-~~~~~~  111 (636)
T PF05817_consen   46 SSDLESAYYAVLGLKLL-GIKVPD--SKAACKFLKKALDE----------SSNDLESLFYAASASKALKCKVS-VSNEVK  111 (636)
T ss_pred             cccHHHHHHHHhhHHHh-CCCCCC--hhhHHHHHHHhhcc----------ccchHHHHHHHHHHHhhcCCccc-CcHHHH
Confidence            46889999999999999 766655  88999999863221          11467789999999999983221 134444


Q ss_pred             HHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhcc
Q psy6404          83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNK  120 (361)
Q Consensus        83 ~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~  120 (361)
                      +-+.+.-+.|          +.+..-|+|+.+|..+|.
T Consensus       112 ~~l~~~l~~~----------s~~~~iy~av~sl~~lg~  139 (636)
T PF05817_consen  112 SLLKAALSED----------SSVSQIYYAVSSLKLLGL  139 (636)
T ss_pred             HHHHHHhcCC----------ccHHHHHHHHHHHHHcCC
Confidence            4444433333          345668999999999985

The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex

>KOG1366|consensus

Probab=90.82  E-value=1.5  Score=50.47  Aligned_cols=89  Identities=10%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHccCCCCCChhhHHHHHHHHHh-------ccCCCCcccccCC-CCCCchhHHHHHHHHHHHhcCC---Cc
Q psy6404           7 AVLETAVEVLEAVPPGVLALVYRLQISTSLRS-------FTTPCFSFKCTLA-DGDCDMRFVFCACSICYILDDW---SG   75 (361)
Q Consensus         7 ~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~-------~Q~~dG~f~~~~~-~~~~d~~~ty~al~~l~lL~~~---~~   75 (361)
                      +-+++.+.-|...  +.+....+++.+++|..       .+++||+|..+-. .....+|.|-+.+..+..-..+   +.
T Consensus       946 aPni~v~~YL~~t--~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~ 1023 (1436)
T KOG1366|consen  946 APNIYVLKYLPKT--NQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDP 1023 (1436)
T ss_pred             cchhhHHHHHhhh--hccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecH
Confidence            3456666777776  56665567788888774       3578999987632 1235577777777766655432   33


Q ss_pred             ccHHHHHHHHHhcCCCCCCCCC
Q psy6404          76 MDRARCLEFIFRSLSYDGAFGQ   97 (361)
Q Consensus        76 ~~~~~~i~~i~~~q~~dGGF~~   97 (361)
                      .-..++++|+...|.++|.|-.
T Consensus      1024 ~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1024 NVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred             HHHHHHHHHHHHhhccCceEec
Confidence            4478899999999999999844

>PLN02592 ent-copalyl diphosphate synthase

Probab=80.01  E-value=2.1  Score=46.35  Aligned_cols=56  Identities=9%  Similarity=0.030  Sum_probs=38.4

Q ss_pred             cHHHHHHHHHhccCCCCCCCCCCC--CCCchhhhhhhhhhccc-ccchhhHHHHHHHHH
Q psy6404         191 DEERLLLSVLDTQHMTGGLSKWSD--TQADILHTYLGEFFVRP-RIIKTQIESLKRWLI  246 (361)
Q Consensus       191 ~~~~~~~~I~scQ~~dGGf~~~p~--~~s~~~~T~~ala~L~~-~~~~~~~~~l~~WL~  246 (361)
                      -...+++||++.|.+|||||..+.  ..-....|..||.||.. ...+..+++.+.+|.
T Consensus       116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fi~  174 (800)
T PLN02592        116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFR  174 (800)
T ss_pred             CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            346799999999999999998532  12235678888888853 233344566666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		2e-43
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		3e-18
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		3e-19
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		1e-12
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		4e-19
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		1e-12
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		4e-14
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		8e-05
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		5e-14
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		8e-05
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		5e-14
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		8e-05
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		5e-14
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		8e-05
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		6e-14
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		8e-05
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		6e-14
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		9e-05
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		6e-14
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		8e-05
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		6e-14
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		8e-05
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		7e-14
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		8e-05
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		9e-14
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		4e-05
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		9e-14
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		4e-05
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		1e-13
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		4e-05
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		1e-13
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		4e-05
3dra_B	390	Candida Albicans Protein Geranylgeranyltransferase-		9e-09
3q73_B	520	Cryptococcus Neoformans Protein Farnesyltransferase		1e-04

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 18/180 (10%)
Query: 48  CTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106
           C + +G + DMRFV+CA  ICY+L++WSGMD  + + +I RS+SYD    QG  LESHGG
Sbjct: 162 CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221
Query: 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPN 166
           ST+C +ASL LM KL+                 +F   ++  +KRW I RQ++G+ GRPN
Sbjct: 222 STFCGIASLCLMGKLEE----------------VFSEKELNRIKRWCIMRQQNGYHGRPN 265
Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
           KPVDTCY+FW+GA+L +L    + + E+    +L TQ  + GG +KW D+  D LH Y G
Sbjct: 266 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 325

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 235 KTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDT 294
           + ++  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 295 Q-HMTGGLSKWSDTQADILHTYL 316
           Q  + GG +KW D+  D LH Y 
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYF 324

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RF FCA +   +L     ++  + +EF+   +++DG FG  P  ESH G  YC  
Sbjct: 138 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 197
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
             LA+ ++L  +                      + L  WL  RQ    G  GRP K  D
Sbjct: 198 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 237
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
            CY++W+ ASL I+    WID E+L   +L  Q   TGG +       D  HT  G
Sbjct: 238 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 293

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
           ++   F G     +DT ++F   A+L++L     I+ E+ +  VL   +  GG      S
Sbjct: 127 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 186
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
           ++ A  ++   G   +  ++ +   + L  WL  RQ    G  GRP K  D CY++W+ A
Sbjct: 187 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 246
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
           SL I+    WID E+L   +L  Q   TGG +       D  HT       A  + L E 
Sbjct: 247 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 303
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
             + P+      P + L+R++     V
Sbjct: 304 QIK-PVSPVFCMPEEVLQRVNVQPELV 329

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
           G+ D RF FCA +   +L     ++  + +EF+   +++DG FG  P  ESH G  YC  
Sbjct: 139 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
             LA+ ++L  +                      + L  WL  RQ    G  GRP K  D
Sbjct: 199 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 238
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
            CY++W+ ASL I+    WID E+L   +L  Q   TGG +       D  HT  G
Sbjct: 239 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 294

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
           ++   F G     +DT ++F   A+L++L     I+ E+ +  VL   +  GG      S
Sbjct: 128 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 187
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
           ++ A  ++   G   +  ++ +   + L  WL  RQ    G  GRP K  D CY++W+ A
Sbjct: 188 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 247
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
           SL I+    WID E+L   +L  Q   TGG +       D  HT       A  + L E 
Sbjct: 248 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 304
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
             + P+      P + L+R++     V
Sbjct: 305 QIK-PVSPVFCMPEEVLQRVNVQPELV 330

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 150 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 208
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 209 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 248
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 249 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 293

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 212 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 271
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 272 NKLVDGCYSFWQAGLLPLLHRA 293

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 149 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 207
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 208 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 247
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 248 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 292

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 211 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 270
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 271 NKLVDGCYSFWQAGLLPLLHRA 292

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 150 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 208
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 209 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 248
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 249 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 293

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 212 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 271
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 272 NKLVDGCYSFWQAGLLPLLHRA 293

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 150 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 208
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 209 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 248
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 249 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 293

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 212 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 271
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 272 NKLVDGCYSFWQAGLLPLLHRA 293

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 174 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 232
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 233 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 272
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 273 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 317

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 236 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 295
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 296 NKLVDGCYSFWQAGLLPLLHRA 317

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 170 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 228
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 229 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 268
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 269 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 313

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 232 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 291
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 292 NKLVDGCYSFWQAGLLPLLHRA 313

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ K  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  +     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ +  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  R     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ +  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  R     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ +  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  R     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26  LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
           ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86  FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
            R  +++G  G  P +E+HGG T+C LA+L ++ +  +L                     
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
           ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
           Q+  GG+      +A   +T+ G     +  R     ++SL +W+  RQ     GFQGR 
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
           NK VD CY+FW    L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314

>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 28/200 (14%)
Query: 53  GDCDMRFVFCACSICYIL--DDW-----------SGMDRARCLEFIFRSLSYDGAFGQGP 99
           G+ D+R  + A  I +++  DD            + +D     +FI   ++ +G F    
Sbjct: 155 GEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTI 214
Query: 100 CLESHGGSTYCALASLALMN-KLDTLRPTQASL------YLDLVKSFLFYSPQIESLKRW 152
             ESH G T+CA+ASL L+N  L+ L+ T+  L      Y + +           +   +
Sbjct: 215 MDESHLGFTFCAIASLKLLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNY 274
Query: 153 LIFRQR--SGFQGRPNKPVDTCYTFWIGASLSIL--NAATWID---EERLLLSVLDTQHM 205
             +R     GF GR NK  DTCY++W   SL  +  N    +D    E  LL+    Q +
Sbjct: 275 EYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQ-L 333
Query: 206 TGGLSKWSDTQADILHTYLG 225
            GG  +  D+  D +H+YL 
Sbjct: 334 FGGFGRDPDSTPDPMHSYLA 353

>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 42/159 (26%)
Query: 53  GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFG---------------- 96
           G+ D+R  +C   +  +LD  +        +F+    +Y+G F                 
Sbjct: 192 GEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAF 251
Query: 97  ---QGPC----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESL 149
              +  C     E+HGG T C+L S  L+  +              + SF   S    + 
Sbjct: 252 PTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVP-------------LPSFPL-SIDANAA 297
Query: 150 KRWLIFRQR-----SGFQGRPNKPVDTCYTFWIGASLSI 183
            RW + +Q       GF+GR NK VD CY++W+G    +
Sbjct: 298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV 336

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	7e-53
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	9e-34
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	3e-04
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	7e-46
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-44
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-09
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-43
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	7e-37
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	1e-39
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	4e-25
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	8e-39
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	2e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  178 bits (452), Expect = 7e-53
 Identities = 83/203 (40%), Positives = 116/203 (57%), Gaps = 17/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ V +      LR+      SF       + DMRFV+CA  ICY+L++WSGMD  + + 
Sbjct: 139 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAIS 198

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I RS+SYD    QG  LESHGGST+C +ASL LM KL+ +                   
Sbjct: 199 YIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFS----------------E 242

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT- 202
            ++  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L T 
Sbjct: 243 KELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ 302

Query: 203 QHMTGGLSKWSDTQADILHTYLG 225
             + GG +KW D+  D LH Y G
Sbjct: 303 DRLVGGFAKWPDSHPDALHAYFG 325

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  127 bits (320), Expect = 9e-34
 Identities = 63/293 (21%), Positives = 118/293 (40%), Gaps = 21/293 (7%)

Query: 57  MRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLA 116
           +   F A S   +LD    +++   +E+I+                   GS+Y  +    
Sbjct: 48  LTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNP 107

Query: 117 LMNKLD-------TLRPT-QASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPN 166
             N           +  T      L ++          E+    L   Q     F   P 
Sbjct: 108 SKNPGTAHPYDSGHIAMTYTGLSCLIILGDD-LSRVDKEACLAGLRALQLEDGSFCAVPE 166

Query: 167 -KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLG 225
               D  + +       +LN  + +D ++ +  +  +     GL++ +  ++    T+ G
Sbjct: 167 GSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCG 226

Query: 226 ----EFFVRPRIIKTQ--IESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSA 279
                   +   + ++  +  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L   
Sbjct: 227 IASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIF 286

Query: 280 TWIDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKE 329
            + + E+    +L T   + GG +KW D+  D LH Y  +  +S    + + +
Sbjct: 287 QYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICK 339

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 32/197 (16%)

Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVR--- 230
            F+  + L +L++   ++++ ++  +   Q +        D       +YLG  F     
Sbjct: 51  AFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKN 110

Query: 231 ---------PRIIKT-----------------QIESLKRWLIFRQRS--GFQGRPN-KPV 261
                      I  T                   E+    L   Q     F   P     
Sbjct: 111 PGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSEN 170

Query: 262 DTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSH 321
           D  + +       +LN+ + +D ++ +  +  +     GL++ +  ++    T+    S 
Sbjct: 171 DMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASL 230

Query: 322 ASRNKLKERNFQLPLDK 338
               KL+E   +  L++
Sbjct: 231 CLMGKLEEVFSEKELNR 247

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  158 bits (401), Expect = 7e-46
 Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 24/221 (10%)

Query: 8   VLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSIC 67
           +L T   V        + ++   ++   ++S      SF      G+ D RF FCA +  
Sbjct: 95  LLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD-IWGEIDTRFSFCAVATL 153

Query: 68  YILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPT 127
            +L     ++  + +EF+   +++DG FG  P  ESH G  YC    LA+ ++L  +   
Sbjct: 154 ALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQV--- 210

Query: 128 QASLYLDLVKSFLFYSPQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSILN 185
                              + L  WL  RQ    G  GRP K  D CY++W+ ASL I+ 
Sbjct: 211 -----------------NSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIG 253

Query: 186 AATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
              WID E+L   +L  Q   TGG +       D  HT  G
Sbjct: 254 RLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 294

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  155 bits (392), Expect = 2e-44
 Identities = 61/283 (21%), Positives = 109/283 (38%), Gaps = 29/283 (10%)

Query: 56  DMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASL 115
            M  V+   ++  ++     M++   L FI       G        + H   T  A+  L
Sbjct: 46  RMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQIL 105

Query: 116 ALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCY 173
            L +                      +   ++ +  ++   Q+    F G     +DT +
Sbjct: 106 TLYDS--------------------IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRF 145

Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADI--LHTYLGEFFVRP 231
           +F   A+L++L     I+ E+ +  VL   +  GG      +++    ++   G   +  
Sbjct: 146 SFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITS 205

Query: 232 RIIKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLL 289
           ++ +   + L  WL  RQ    G  GRP K  D CY++W+ ASL I+    WID E+L  
Sbjct: 206 QLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRS 265

Query: 290 SVLDTQ-HMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKE 329
            +L  Q   TGG +       D  HT   +  +S     ++K 
Sbjct: 266 FILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKP 308

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 4/165 (2%)

Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP-- 231
            +W    + ++     +++E +L+ +   QH  GG+S        +L+T      +    
Sbjct: 50  VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYD 109

Query: 232 RIIKTQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLL 289
            I    ++ +  ++   Q+    F G     +DT ++F   A+L++L     I+ E+ + 
Sbjct: 110 SIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIE 169

Query: 290 SVLDTQHMTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQL 334
            VL   +  GG      +++     Y      A  ++L + N  L
Sbjct: 170 FVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDL 214

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  155 bits (393), Expect = 1e-43
 Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 38/219 (17%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
             ++ R ++   L S   P  SF   +  G+ D+R  +CA S+  + +  +        E
Sbjct: 169 YDIINREKLLQYLYSLKQPDGSFLMHV-GGEVDVRSAYCAASVASLTNIITPDLFEGTAE 227

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I R  +++G  G  P +E+HGG T+C LA+L ++ +  +L                   
Sbjct: 228 WIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSL------------------- 268

Query: 144 PQIESLKRWLIFRQRS---GFQGRPNKPVDTCYTFWIGASLSILNAATW----------- 189
             ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A             
Sbjct: 269 -NLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327

Query: 190 --IDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYLG 225
               ++ L   +L   Q   GGL        D  HT   
Sbjct: 328 WMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYC 366

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  137 bits (345), Expect = 7e-37
 Identities = 66/314 (21%), Positives = 107/314 (34%), Gaps = 44/314 (14%)

Query: 61  FCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNK 120
           +   S+  + +    +      +F+    S +G FG GP    H   TY A+ +L ++  
Sbjct: 106 WILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGT 165

Query: 121 LDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIG 178
            +                        E L ++L   ++    F       VD    +   
Sbjct: 166 EEAYDI-----------------INREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAA 208

Query: 179 ASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKT 236
           +  S+ N  T    E     +   Q+  GG+      +A   +T+  L    +  R    
Sbjct: 209 SVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSL 268

Query: 237 QIESLKRWLIFRQRS---GFQGRPNKPVDTCYTFWIGASLSILNSATW------------ 281
            ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A              
Sbjct: 269 NLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW 328

Query: 282 -IDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKERNFQLPLD 337
              ++ L   +L   Q   GGL        D  HT   L  +S A           +  D
Sbjct: 329 MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA----MLHD 384

Query: 338 KKDIAPLDELERID 351
                P + L+   
Sbjct: 385 VVLGVPENALQPTH 398

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  143 bits (362), Expect = 1e-39
 Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 68/221 (30%)

Query: 52  DGDCDMRFVFCACSICYILD-------------DWSGMDRARCLEFIFRSLSYDGAFGQG 98
            G+ D+R  + A  I +++              + + +D     +FI   ++ +G F   
Sbjct: 154 YGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST 213

Query: 99  PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQR 158
              ESH G T+CA+ASL L+N                         +++S K WLI RQ 
Sbjct: 214 IMDESHLGFTFCAIASLKLLNYPL---------------------EKLKSTKEWLIHRQV 252

Query: 159 S------------------------------GFQGRPNKPVDTCYTFWIGASLSILNAA- 187
                                          GF GR NK  DTCY++W   SL  ++   
Sbjct: 253 DYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF 312

Query: 188 -TWIDEERLLLSVLDTQHMT--GGLSKWSDTQADILHTYLG 225
              +D  +    +L+       GG  +  D+  D +H+YL 
Sbjct: 313 IKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLA 353

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  104 bits (259), Expect = 4e-25
 Identities = 53/281 (18%), Positives = 89/281 (31%), Gaps = 51/281 (18%)

Query: 61  FCACSICYILDD--WSGMDRARCLEFIFRSLSYDGAFGQG-----------PCLESHGGS 107
             A     IL     + ++R + + F+ +    DG    G              + +G  
Sbjct: 98  LFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEP 157

Query: 108 ----TYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GF 161
                Y AL    LM   D           +           + SL+++++ R     GF
Sbjct: 158 DLRVCYMALLIRHLMKYDDNNNNNNREDSNET-------DIDLISLQQFILDRININGGF 210

Query: 162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILH 221
                      +TF   ASL +LN       +     ++  Q          D   D   
Sbjct: 211 SSTIMDESHLGFTFCAIASLKLLNY-PLEKLKSTKEWLIHRQVDYPENLYPKDGNGD--- 266

Query: 222 TYLGEFFVRPRIIKTQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSA 279
                             +   +  +R     GF GR NK  DTCY++W   SL  ++  
Sbjct: 267 ---------------GNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVN 311

Query: 280 --TWIDEERLLLSVLDTQHMT--GGLSKWSDTQADILHTYL 316
               +D  +    +L+       GG  +  D+  D +H+YL
Sbjct: 312 FIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYL 352

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  143 bits (362), Expect = 8e-39
 Identities = 53/292 (18%), Positives = 89/292 (30%), Gaps = 55/292 (18%)

Query: 16  LEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSG 75
             +          R  I         P   F      G+ D+R  +C   +  +LD  + 
Sbjct: 156 DSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCE-GGEVDVRGTYCLLVVATLLDIITP 214

Query: 76  MDRARCLEFIFRSLSYDGAFGQ-----------------------GPCLESHGGSTYCAL 112
                  +F+    +Y+G F                             E+HGG T C+L
Sbjct: 215 ELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSL 274

Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS-----GFQGRPNK 167
            S  L+  +           +D             +  RW + +Q       GF+GR NK
Sbjct: 275 NSHFLLTSVPLPSFPL---SIDA-----------NAALRWTVLQQGEPIEGGGFRGRTNK 320

Query: 168 PVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQA--DILHTYLG 225
            VD CY++W+G    +       ++ R +               W D      I +    
Sbjct: 321 LVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVAL 380

Query: 226 EFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILN 277
           + F    ++  Q +            G + +P K  D  +T    + LSI  
Sbjct: 381 QEFT---LVAAQQDPGS-------TGGLRDKPGKRPDQYHTCNNLSGLSIAQ 422

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  117 bits (294), Expect = 2e-29
 Identities = 55/337 (16%), Positives = 93/337 (27%), Gaps = 89/337 (26%)

Query: 57  MRFVFCACSICYILD-DWSGMDRARCLEFIFRSLSYDGAFGQGP--CLESHGGSTYCALA 113
              VF       +L        + R +  +   LS  G FG GP      H   TY ++ 
Sbjct: 89  PWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVC 148

Query: 114 SLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDT 171
           SLA+     +    +                  +S+  + +  +R   GF       VD 
Sbjct: 149 SLAIAGNDSSTGGWKDLAA------------ARQSIYEFFMRCKRPDGGFVVCEGGEVDV 196

Query: 172 CYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY-------- 223
             T+ +    ++L+  T      +   V   Q   GG +  S     ++ +         
Sbjct: 197 RGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP 256

Query: 224 -----------------------LGEFFVRPRIIKTQIESLKRWLIFRQRS-----GFQG 255
                                  L    +    +     +  RW + +Q       GF+G
Sbjct: 257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRG 316

Query: 256 RPNKPVDTCYTFWIGASLSILNSAT--------------------------------WID 283
           R NK VD CY++W+G    +                                       +
Sbjct: 317 RTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFN 376

Query: 284 EER----LLLSVLDTQHMTGGLSKWSDTQADILHTYL 316
                   L++       TGGL      + D  HT  
Sbjct: 377 RVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCN 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 47/302 (15%), Positives = 86/302 (28%), Gaps = 89/302 (29%)

Query: 114 SLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKR---WLIFRQRSGFQGRPNKPVD 170
           +L   N  +T+      L   +  ++   S    ++K     +    R   + +P +   
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--- 244

Query: 171 TCYTFWIGASLSIL----NAATW--IDEE-RLLL-----SVLDT-----------QHMTG 207
                     L +L    NA  W   +   ++LL      V D             H + 
Sbjct: 245 --------NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 208 GLSKWSDTQADILHTYLGEFF---------VRPRIIKTQIESLK----RWLIFRQRSGFQ 254
            L+   D    +L  YL               PR +    ES++     W  ++  +   
Sbjct: 297 TLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--C 352

Query: 255 GRPNKPVDTCYT----------FWIGASLSILNSATWIDEERLLLSVL-------DTQHM 297
            +    +++             F     LS+   +  I     LLS++       D   +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSAHIPTI--LLSLIWFDVIKSDVMVV 407

Query: 298 TGGLSKWSDTQAD-------ILHTYLEAMSHASR-----NKLKER-NFQLPLDKKDIAPL 344
              L K+S  +         I   YLE              + +  N     D  D+ P 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 345 DE 346
             
Sbjct: 468 YL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.89
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.85
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.82
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.76
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.4
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.38
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.3
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.24
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.05
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.01
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	98.72
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.57
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.52
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.48
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	98.47
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	98.22
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.2
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.08
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	97.97
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	97.96
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	97.87
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	97.67
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	97.64
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	97.61
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	97.52
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	97.51
3prx_B	1642	Cobra venom factor; immune system, complement, imm	97.35
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	97.3
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	97.28
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	97.21
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	97.18
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	96.98
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	96.97
3prx_B	1642	Cobra venom factor; immune system, complement, imm	96.23
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	95.97
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	95.56

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=1.6e-69  Score=527.93  Aligned_cols=300  Identities=23%  Similarity=0.357  Sum_probs=269.1

Q ss_pred             hhhHHHHHHHHHhccCC-CCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC---------CCCCC
Q psy6404          26 LVYRLQISTSLRSFTTP-CFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLS---------YDGAF   95 (361)
Q Consensus        26 ~~~~~~~~~~L~~~Q~~-dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~---------~dGGF   95 (361)
                      .+.|++|++|++++.+. +++|...   ..++++.+||++.+|.+|+.+...+++++++||++||+         ++|||
T Consensus        19 ~l~~~~H~~y~~~~l~~lp~~~~~~---d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF   95 (377)
T 1n4q_B           19 DFLRDRHVRFFQRCLQVLPERYSSL---ETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGF   95 (377)
T ss_dssp             CCCHHHHHHHHHHHHHEECGGGGGG---GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEE
T ss_pred             ccCHHHHHHHHHHHhhcCCcccccc---ccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCcc
Confidence            46799999999997643 4566664   35899999999999999997666779999999999999         68999


Q ss_pred             CCCCCC-----------------ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc-
Q psy6404          96 GQGPCL-----------------ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ-  157 (361)
Q Consensus        96 ~~~p~~-----------------~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q-  157 (361)
                      ++++..                 .+|+.+||+||.+|.+++..                   +++++++++++||.+.| 
T Consensus        96 ~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~-------------------~~~id~~~~~~fL~~~Q~  156 (377)
T 1n4q_B           96 RGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD-------------------LSRVDKEACLAGLRALQL  156 (377)
T ss_dssp             CSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC-------------------STTSCHHHHHHHHHHHBC
T ss_pred             CCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc-------------------cchhhHHHHHHHHHHhcC
Confidence            998754                 48999999999999999862                   12347789999999988 


Q ss_pred             -CCccccC-CCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--cc
Q psy6404         158 -RSGFQGR-PNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RI  233 (361)
Q Consensus       158 -dGgF~~~-~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~  233 (361)
                       ||||.+. .+++.|+|+||||++++.+++..+.++++++++||++|||+|||||..|+.|||+++||||+++|..  ..
T Consensus       157 ~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~  236 (377)
T 1n4q_B          157 EDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL  236 (377)
T ss_dssp             TTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCH
T ss_pred             CCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCc
Confidence             9999997 6799999999999999999998888999999999999999999999999999999999999999863  22


Q ss_pred             chh----hHHHHHHHHHHhhcCCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCC
Q psy6404         234 IKT----QIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQ  308 (361)
Q Consensus       234 ~~~----~~~~l~~WL~~rQ~gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~  308 (361)
                      +..    +++++++||++||.|||||||||++|+|||||++++|.+|+..+|+|.+++++||++||++ .|||+|+|++.
T Consensus       237 ~~~~~~~~~~rli~wL~~rQ~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~  316 (377)
T 1n4q_B          237 EEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSH  316 (377)
T ss_dssp             HHHSCHHHHHHHHHHHHTTBSSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSC
T ss_pred             ccccchhhHHHHHHHHHhcCCCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCC
Confidence            222    7899999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             CChHHHHHHH--HHhcccCCCccccccCCCCcccccchhhH
Q psy6404         309 ADILHTYLEA--MSHASRNKLKERNFQLPLDKKDIAPLDEL  347 (361)
Q Consensus       309 ~D~~hT~~a~--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (361)
                      ||+|||||++  +||++++.+.|++|.++++++..++++++
T Consensus       317 ~D~~HT~~~LagLsl~~~~~l~~i~p~~~i~~~~~~~~~~~  357 (377)
T 1n4q_B          317 PDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDL  357 (377)
T ss_dssp             CBHHHHHHHHHHHHHTTCTTCCCEETTTTEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            9999999975  68889999999999999998877776666

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=3e-68  Score=518.28  Aligned_cols=296  Identities=20%  Similarity=0.232  Sum_probs=256.8

Q ss_pred             hhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC--CcccHHHHHHHHHhcCCCC----CCCCCC
Q psy6404          26 LVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDDW--SGMDRARCLEFIFRSLSYD----GAFGQG   98 (361)
Q Consensus        26 ~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~--~~~~~~~~i~~i~~~q~~d----GGF~~~   98 (361)
                      .++|++|++|++++ +.-+..|.+.   ..++++.+||++.+|.+|+..  ...++++.++||++||.++    |||+++
T Consensus         3 ~l~~~kHiky~~~~L~~Lp~~~~s~---D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~   79 (390)
T 3dra_B            3 QLLINKHEKFFNRCLIGLPSTAQSE---DSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRST   79 (390)
T ss_dssp             CCCHHHHHHHHHHHHHCCCGGGGGG---TTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSS
T ss_pred             cccHHHHHHHHHHHHHhCCcchhhc---chhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCC
Confidence            46799999999985 4444566654   348999999999999999976  5678999999999998664    999999


Q ss_pred             C-----C---CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc------CCccccC
Q psy6404          99 P-----C---LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ------RSGFQGR  164 (361)
Q Consensus        99 p-----~---~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q------dGgF~~~  164 (361)
                      |     +   +.+|+++||+||.+|.+++..  .                ++..+++++++||.++|      ||||...
T Consensus        80 ~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~----------------~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~  141 (390)
T 3dra_B           80 HYFQKTNQKYDCPNLSSTLFALYNLLILKSP--Y----------------HTIINRKKIMNFLCKCQVKDGINKGGFVPT  141 (390)
T ss_dssp             GGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC--G----------------GGTCCHHHHHHHHHHHBCCSSTTTTCBCSE
T ss_pred             ccCCCCCCccCcccHHHHHHHHHHHHHhCch--h----------------hccccHHHHHHHHHHHhCCCCCCCCceeee
Confidence            5     4   579999999999999999973  1                12348899999998765      6999954


Q ss_pred             C-----------CCCCCccchhHHHHHHHHhhhhc-------------cccHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q psy6404         165 P-----------NKPVDTCYTFWIGASLSILNAAT-------------WIDEERLLLSVLDTQHMTGGLSKWSDTQADIL  220 (361)
Q Consensus       165 ~-----------~~~~D~~~ty~a~~~L~ll~~~~-------------~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~  220 (361)
                      +           +++.|+|++|||++++.||+...             .+|++++++||++|||+||||+..|+.|||++
T Consensus       142 ~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G  221 (390)
T 3dra_B          142 LYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLG  221 (390)
T ss_dssp             EEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHH
T ss_pred             ccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccc
Confidence            3           68999999999999999999876             68999999999999999999999999999999


Q ss_pred             hhhhhhhhccc--ccchhhHHHHHHHHHHhhc------------------------------CCCCCCCCCCCcccccch
Q psy6404         221 HTYLGEFFVRP--RIIKTQIESLKRWLIFRQR------------------------------SGFQGRPNKPVDTCYTFW  268 (361)
Q Consensus       221 ~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~------------------------------gGF~GR~nK~~D~CYsfW  268 (361)
                      +|||||++|..  .. ..+++++++||++||.                              |||||||||++|+|||||
T Consensus       222 ~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~W  300 (390)
T 3dra_B          222 FTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWW  300 (390)
T ss_dssp             HHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHH
T ss_pred             hhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHH
Confidence            99999999863  22 3688999999999996                              899999999999999999


Q ss_pred             HHHHHHHhhc--cCcccHHHHHHHHHhc-cCC-CCCcCCCCCCCCChHHHHHHH--HHhccc--CCCccccccCCCCccc
Q psy6404         269 IGASLSILNS--ATWIDEERLLLSVLDT-QHM-TGGLSKWSDTQADILHTYLEA--MSHASR--NKLKERNFQLPLDKKD  340 (361)
Q Consensus       269 ~~a~L~~L~~--~~~~~~~~~~~~il~~-Q~~-~GGf~~~p~~~~D~~hT~~a~--~sl~~~--~~~~~~~~~~~~~~~~  340 (361)
                      ++++|.||+.  .+|+|.+++++||+.| |++ .|||+|+|++.||+|||||++  +||+++  ++|.+|+|.++++++.
T Consensus       301 v~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~~~l~~vdp~~~ip~~~  380 (390)
T 3dra_B          301 CTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITKES  380 (390)
T ss_dssp             HHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHHHTCCCEETTTTEEHHH
T ss_pred             HHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCccCCCceeCchhcCCHHH
Confidence            9999999995  5799999999999976 676 999999999999999999976  577776  7899999999997766


Q ss_pred             ccc
Q psy6404         341 IAP  343 (361)
Q Consensus       341 ~~~  343 (361)
                      .++
T Consensus       381 ~~~  383 (390)
T 3dra_B          381 YQF  383 (390)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=9.9e-67  Score=518.85  Aligned_cols=285  Identities=21%  Similarity=0.236  Sum_probs=249.9

Q ss_pred             ChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhc-CCCcccHHHHHHHHHhcCCCCCCCCCCC--C
Q psy6404          25 ALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILD-DWSGMDRARCLEFIFRSLSYDGAFGQGP--C  100 (361)
Q Consensus        25 ~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~-~~~~~~~~~~i~~i~~~q~~dGGF~~~p--~  100 (361)
                      +.++|++|++||+++ +.-+..|.+.   ..++++.+||++.+|.+|+ .++..+++++++||++||++||||+++|  +
T Consensus        59 ~~L~~~~Hi~yl~~~L~~LP~~y~~~---Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~  135 (520)
T 3q7a_B           59 SGLRKQEHTQFLASSFFQLPGKFVSL---DASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANS  135 (520)
T ss_dssp             CCCCHHHHHHHHHHHHSCBCGGGGGG---GGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTT
T ss_pred             cccCHHHHHHHHHHHhhhCChhhhhc---ccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            468899999999987 4445566654   2479999999999999999 5666789999999999999999999999  9


Q ss_pred             CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHh--HHHHHHHHHHhc--CCccccCCCCCCCccchhH
Q psy6404         101 LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ--IESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW  176 (361)
Q Consensus       101 ~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~--~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~  176 (361)
                      +.+|+.+||+||++|.+++....-..              ++.++  ++++++||.++|  ||||.+..+++.|+|+|||
T Consensus       136 ~~~hla~TysAV~aL~ilg~~~p~~~--------------~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~  201 (520)
T 3q7a_B          136 QIPHLLPTYASVCSLAIAGNDSSTGG--------------WKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYC  201 (520)
T ss_dssp             SCCCHHHHHHHHHHHHHHCBSSTTSB--------------HHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhCccccchh--------------hhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHH
Confidence            99999999999999999997421000              12346  899999999988  9999998889999999999


Q ss_pred             HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCC-----------------------CCCCCCchhhhhhhhhhccc--
Q psy6404         177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK-----------------------WSDTQADILHTYLGEFFVRP--  231 (361)
Q Consensus       177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~-----------------------~p~~~s~~~~T~~ala~L~~--  231 (361)
                      |+++|.+|+..+..+++++++||++||++|||||.                       .|+.|||+++|||||++|..  
T Consensus       202 Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~  281 (520)
T 3q7a_B          202 LLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLT  281 (520)
T ss_dssp             HHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhc
Confidence            99999999987778899999999999999999999                       68999999999999999863  


Q ss_pred             cc------chhhHHHHHHHHHHhhc-----CCCCCCCCCCCcccccchHHHHHHHhhcc---------------------
Q psy6404         232 RI------IKTQIESLKRWLIFRQR-----SGFQGRPNKPVDTCYTFWIGASLSILNSA---------------------  279 (361)
Q Consensus       232 ~~------~~~~~~~l~~WL~~rQ~-----gGF~GR~nK~~D~CYsfW~~a~L~~L~~~---------------------  279 (361)
                      .+      ...+++++++||++||.     ||||||+||++|+|||||++++|.||+..                     
T Consensus       282 ~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~  361 (520)
T 3q7a_B          282 SVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEK  361 (520)
T ss_dssp             TSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC------------
T ss_pred             cccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccccccccccccccccc
Confidence            22      35689999999999995     99999999999999999999999999874                     


Q ss_pred             --C---------cccHHHHHHHHH-hccCCC---CCcCCCCCCCCChHHHHHHH--HHhcccCC
Q psy6404         280 --T---------WIDEERLLLSVL-DTQHMT---GGLSKWSDTQADILHTYLEA--MSHASRNK  326 (361)
Q Consensus       280 --~---------~~~~~~~~~~il-~~Q~~~---GGf~~~p~~~~D~~hT~~a~--~sl~~~~~  326 (361)
                        +         ++|.+++++||+ +||++.   |||+|+|++.||+|||||++  +||++++.
T Consensus       362 ~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~  425 (520)
T 3q7a_B          362 EGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKM  425 (520)
T ss_dssp             ---------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCE
T ss_pred             ccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Confidence              2         479999999998 799987   99999999999999999975  68877664

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=1e-65  Score=494.78  Aligned_cols=299  Identities=21%  Similarity=0.323  Sum_probs=270.1

Q ss_pred             CCCCChhhHHHHHHHHHhccCC--CCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCC
Q psy6404          21 PGVLALVYRLQISTSLRSFTTP--CFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQG   98 (361)
Q Consensus        21 g~~l~~~~~~~~~~~L~~~Q~~--dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~   98 (361)
                      .+.-..++|++|++||+++...  +..|...   ..++++.+||++.+|.+|+.++..+++++++||++||++||||++.
T Consensus        12 ~~~~~~l~~~~h~~y~~~~~~~~~~~~~~~~---d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~   88 (331)
T 3dss_B           12 SDAPDTLLLEKHADYIASYGSKKDDYEYCMS---EYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSAS   88 (331)
T ss_dssp             TTSCCSCCHHHHHHHHHHTTSSSCGGGSGGG---GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSS
T ss_pred             CCCchhhhHHHHHHHHHHhccCCCCccceec---cccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCC
Confidence            3444568899999999997332  2334333   2489999999999999999888889999999999999999999999


Q ss_pred             CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH
Q psy6404          99 PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW  176 (361)
Q Consensus        99 p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~  176 (361)
                      |++++|+.+||+||++|.+++.++.                    ++++++++||.++|  ||||.+++++++|+|+|||
T Consensus        89 ~g~~~~l~~Ty~Al~~L~~l~~~~~--------------------id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~  148 (331)
T 3dss_B           89 IGHDPHLLYTLSAVQILTLYDSIHV--------------------INVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFC  148 (331)
T ss_dssp             TTSCBCHHHHHHHHHHHHHTTCGGG--------------------SCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHcCCccH--------------------HHHHHHHHHHhccCCCCCCEecccCCCCchHHHHH
Confidence            9999999999999999999986432                    37899999999988  9999999999999999999


Q ss_pred             HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CC
Q psy6404         177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SG  252 (361)
Q Consensus       177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gG  252 (361)
                      |+++|.+++..+.++++++++||++||++||||+..|+.++|.++||||+++|..  ..+..+++++++||.+||.  ||
T Consensus       149 Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGG  228 (331)
T 3dss_B          149 AVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGG  228 (331)
T ss_dssp             HHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCC
Confidence            9999999998888999999999999999999999999999999999999999853  4556789999999999997  99


Q ss_pred             CCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCC-CCcCCCCCCCCChHHHHHHH--HHhcccCCCcc
Q psy6404         253 FQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMT-GGLSKWSDTQADILHTYLEA--MSHASRNKLKE  329 (361)
Q Consensus       253 F~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~-GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~  329 (361)
                      |+||+||++|+|||||++++|.+++..+|+|.+++++||++||+++ |||+++|++.||+||||+++  +|+++.+++.|
T Consensus       229 f~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~l~~  308 (331)
T 3dss_B          229 LNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKP  308 (331)
T ss_dssp             BCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCC
T ss_pred             cCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999985 99999999999999999975  68889999999


Q ss_pred             ccccCCCCccccc
Q psy6404         330 RNFQLPLDKKDIA  342 (361)
Q Consensus       330 ~~~~~~~~~~~~~  342 (361)
                      ++|.++++++..+
T Consensus       309 ~~p~~~~~~~~~~  321 (331)
T 3dss_B          309 VSPVFCMPEEVLQ  321 (331)
T ss_dssp             BCTTTSSBHHHHH
T ss_pred             CCccccCCHHHHH
Confidence            9999999766544

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=2.9e-64  Score=499.62  Aligned_cols=297  Identities=23%  Similarity=0.265  Sum_probs=263.9

Q ss_pred             CChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404          24 LALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCL  101 (361)
Q Consensus        24 l~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~  101 (361)
                      .+.++++++++||.++ |+.+|+|....   .++++.+||++.+|.+|+. .+...++++++||++||++||||++.+++
T Consensus        70 ~~~l~~~~hi~~l~~~lq~~~gg~~a~D---~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~  146 (437)
T 2h6f_B           70 RLVLQREKHFHYLKRGLRQLTDAYECLD---ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQ  146 (437)
T ss_dssp             CCCCCHHHHHHHHHHHTTEECGGGGGGT---TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTC
T ss_pred             cccccHHHHHHHHHHcCCCCCCCccccc---CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCC
Confidence            4567899999999999 89999999873   3578899999999999995 35567899999999999999999999999


Q ss_pred             ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404         102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA  179 (361)
Q Consensus       102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~  179 (361)
                      ++|+..||+||.+|.++|..+.                 .+.++++++++||.++|  ||||.+++++++|+|+||||++
T Consensus       147 ~~~i~~T~~Al~aL~~lg~~~~-----------------~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~  209 (437)
T 2h6f_B          147 YPHLAPTYAAVNALCIIGTEEA-----------------YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAAS  209 (437)
T ss_dssp             CBCHHHHHHHHHHHHHHCCHHH-----------------HTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHhCCccc-----------------ccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHH
Confidence            9999999999999999996311                 12247899999999988  9999999999999999999999


Q ss_pred             HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCC
Q psy6404         180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQ  254 (361)
Q Consensus       180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~  254 (361)
                      +|.+++..+..+++++++||++||++||||+..|+.+||+++|||||++|..  ..+..+++++++||++||.   |||+
T Consensus       210 ~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~  289 (437)
T 2h6f_B          210 VASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQ  289 (437)
T ss_dssp             HHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBB
T ss_pred             HHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCcc
Confidence            9999998777788999999999999999999999999999999999999863  4556789999999999997   9999


Q ss_pred             CCCCCCCcccccchHHHHHHHhhccC-------------cccHHHHHHHHHh-ccCCCCCcCCCCCCCCChHHHHHHH--
Q psy6404         255 GRPNKPVDTCYTFWIGASLSILNSAT-------------WIDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYLEA--  318 (361)
Q Consensus       255 GR~nK~~D~CYsfW~~a~L~~L~~~~-------------~~~~~~~~~~il~-~Q~~~GGf~~~p~~~~D~~hT~~a~--  318 (361)
                      |||||++|+|||||++++|.+|+...             ++|.+++++||+. ||+++|||+|+|++.||+|||||++  
T Consensus       290 gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~g  369 (437)
T 2h6f_B          290 GRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSG  369 (437)
T ss_dssp             SSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999998641             5899999999985 8899999999999999999999976  


Q ss_pred             HHhccc----------------CCCccccccCCCCccc
Q psy6404         319 MSHASR----------------NKLKERNFQLPLDKKD  340 (361)
Q Consensus       319 ~sl~~~----------------~~~~~~~~~~~~~~~~  340 (361)
                      +|++++                +.+.||+|.+++....
T Consensus       370 Lsl~~~~~~~~~~~~~~~~~~~~~l~~i~p~~~i~~~~  407 (437)
T 2h6f_B          370 LSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDK  407 (437)
T ss_dssp             HHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHH
T ss_pred             HHHhccccccccccccccCCcccCccccCCcccCCHHH
Confidence            577664                5788899888886533

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=1.6e-46  Score=361.21  Aligned_cols=253  Identities=20%  Similarity=0.289  Sum_probs=234.9

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE   83 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~   83 (361)
                      ..++.|||+|.+|++|  ++++.++|+++++||+++|++||||++.+ +.++++..||+|+.+|.+++.++.++++++++
T Consensus        45 ~r~~~~yw~l~~L~lL--g~l~~~~r~~~i~~l~s~Q~~dGGF~g~~-g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~  121 (331)
T 3dss_B           45 LRMSGVYWGLTVMDLM--GQLHRMNKEEILVFIKSCQHECGGVSASI-GHDPHLLYTLSAVQILTLYDSIHVINVDKVVA  121 (331)
T ss_dssp             GHHHHHHHHHHHHHHT--TCGGGSCHHHHHHHHHHTBCTTSCBBSST-TSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHh--CCCchhhHHHHHHHHhhhcCCCCCcCCCC-CCCccHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            4578999999999999  46888999999999999999999999984 56789999999999999999888889999999


Q ss_pred             HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcc
Q psy6404          84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGF  161 (361)
Q Consensus        84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF  161 (361)
                      ||.++|++||||++.+++++|+..||||+++|.+++..+.                    ++++++++||.++|  ||||
T Consensus       122 fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~--------------------~~~~k~v~~L~s~Q~~dGGf  181 (331)
T 3dss_B          122 YVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDA--------------------INVEKAIEFVLSCMNFDGGF  181 (331)
T ss_dssp             HHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGG--------------------SCHHHHHHHHHTTBCTTSCB
T ss_pred             HHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCH--------------------HHHHHHHHHHHHhCcCCCCc
Confidence            9999999999999999999999999999999999997432                    37889999999998  9999


Q ss_pred             ccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHH
Q psy6404         162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIE  239 (361)
Q Consensus       162 ~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~  239 (361)
                      .++|+.++|+++||||+++|.+++..+.++.+++++||.++|++||||+..|+.++|..+||+++++|..  .....+++
T Consensus       182 g~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~  261 (331)
T 3dss_B          182 GCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDRE  261 (331)
T ss_dssp             CSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHH
Confidence            9999999999999999999999999888999999999999999999999999999999999999999853  44557899


Q ss_pred             HHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHhhcc
Q psy6404         240 SLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSILNSA  279 (361)
Q Consensus       240 ~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L~~~  279 (361)
                      ++++||...|.   |||..+|+|.+|.+++||.+++|.+++..
T Consensus       262 ~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~  304 (331)
T 3dss_B          262 KLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE  304 (331)
T ss_dssp             HHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            99999999885   99999999999999999999999999974

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=2e-44  Score=351.22  Aligned_cols=211  Identities=42%  Similarity=0.780  Sum_probs=196.8

Q ss_pred             CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCL   82 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i   82 (361)
                      +++++.||+||.+|.+| |+.++.++|+++++||+++|+|||+|.+...++++|+++||+|+.++.+|+..+.+++++++
T Consensus       119 ~~~v~~T~~Al~~L~~l-g~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~  197 (377)
T 1n4q_B          119 SGHIAMTYTGLSCLIIL-GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI  197 (377)
T ss_dssp             CCCHHHHHHHHHHHHHT-TCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            58999999999999999 88899999999999999999999999987557889999999999999999987788999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccc
Q psy6404          83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQ  162 (361)
Q Consensus        83 ~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~  162 (361)
                      +||++||++|||||..|+.|+|...||||+++|.+++..+..                .+..+++++++||..+|+|||.
T Consensus       198 ~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~----------------~~~~~~~rli~wL~~rQ~gGf~  261 (377)
T 1n4q_B          198 SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCIMRQQNGYH  261 (377)
T ss_dssp             HHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHH----------------SCHHHHHHHHHHHHTTBSSSBC
T ss_pred             HHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccc----------------cchhhHHHHHHHHHhcCCCCcC
Confidence            999999999999999999999999999999999999974321                1123789999999999999999


Q ss_pred             cCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         163 GRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       163 ~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                      |+|+|.+|+||+||+.++|.+|+....+|.+++++||++||+. +|||+..|+..+|..|||++|++|.
T Consensus       262 GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLs  330 (377)
T 1n4q_B          262 GRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLS  330 (377)
T ss_dssp             SSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHH
T ss_pred             CCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999988889999999999999999 9999999999999999999999885

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=5.7e-43  Score=340.57  Aligned_cols=206  Identities=29%  Similarity=0.403  Sum_probs=188.0

Q ss_pred             CCchhHHHHHHHHHHccCCCC-CChhhHHHHHHHHHhccC---C-CCcccccC----------CCCCCchhHHHHHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGV-LALVYRLQISTSLRSFTT---P-CFSFKCTL----------ADGDCDMRFVFCACSIC   67 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~-l~~~~~~~~~~~L~~~Q~---~-dG~f~~~~----------~~~~~d~~~ty~al~~l   67 (361)
                      +||++.||+||.+|.+| |++ ++.+||+++++||+++|+   | ||+|...+          .+++.|+|++|||++++
T Consensus        91 ~~hl~~Ty~Al~~L~il-g~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~  169 (390)
T 3dra_B           91 CPNLSSTLFALYNLLIL-KSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIR  169 (390)
T ss_dssp             CCBHHHHHHHHHHHHHT-TCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHh-CchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHH
Confidence            69999999999999999 776 688999999999999998   7 89999654          14689999999999999


Q ss_pred             HHhcCCC-------------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHh
Q psy6404          68 YILDDWS-------------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLD  134 (361)
Q Consensus        68 ~lL~~~~-------------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~  134 (361)
                      .+|+...             .++.+++++||++||++||||+..|+.|+|.++|||||++|.+|+...            
T Consensus       170 ~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~------------  237 (390)
T 3dra_B          170 HLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL------------  237 (390)
T ss_dssp             HHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG------------
T ss_pred             HHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc------------
Confidence            9999766             588999999999999999999999999999999999999999999741            


Q ss_pred             hhhhhcCChHhHHHHHHHHHHhc------------------------------CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404         135 LVKSFLFYSPQIESLKRWLIFRQ------------------------------RSGFQGRPNKPVDTCYTFWIGASLSIL  184 (361)
Q Consensus       135 ~v~~~~~~~~~~~~~~~~l~~~Q------------------------------dGgF~~~~~~~~D~~~ty~a~~~L~ll  184 (361)
                               .+++++++||..||                              +|||+|+++|.+|+||+||++++|.||
T Consensus       238 ---------~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL  308 (390)
T 3dra_B          238 ---------EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNI  308 (390)
T ss_dssp             ---------GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHH
T ss_pred             ---------ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHh
Confidence                     26788999999988                              299999999999999999999999999


Q ss_pred             hh--hccccHHHHHHHHHhc-cCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         185 NA--ATWIDEERLLLSVLDT-QHM-TGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       185 ~~--~~~~~~~~~~~~I~sc-Q~~-dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                      +.  ...+|.+++.+||++| |+. .|||+..|+..+|..|||++|++|.
T Consensus       309 ~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLs  358 (390)
T 3dra_B          309 DVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLS  358 (390)
T ss_dssp             CGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence            94  5679999999999998 665 8999999999999999999999985

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=9.8e-41  Score=332.23  Aligned_cols=213  Identities=23%  Similarity=0.316  Sum_probs=189.9

Q ss_pred             CCchhHHHHHHHHHHccCCCC-----CChhh--HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCc
Q psy6404           3 TAEEAVLETAVEVLEAVPPGV-----LALVY--RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSG   75 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~-----l~~~~--~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~   75 (361)
                      .++++.||+||++|.+| +..     ++.++  |+++++||+++|++||+|.+. .+++.|+++||+|+.++.+|+..+.
T Consensus       137 ~~hla~TysAV~aL~il-g~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~-~wGe~Dir~TY~Al~~L~lLg~~~~  214 (520)
T 3q7a_B          137 IPHLLPTYASVCSLAIA-GNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVC-EGGEVDVRGTYCLLVVATLLDIITP  214 (520)
T ss_dssp             CCCHHHHHHHHHHHHHH-CBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSS-TTCCBCHHHHHHHHHHHHHHTCCCH
T ss_pred             CCcHHHHHHHHHHHHHh-CccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecC-CCCCchHHHHHHHHHHHHHcCCCCh
Confidence            58999999999999999 643     56788  999999999999999999886 3678999999999999999998777


Q ss_pred             ccHHHHHHHHHhcCCCCCCCCC-----------------------CCCCccCchhhHHHHHHHHHhccccccccchhhhh
Q psy6404          76 MDRARCLEFIFRSLSYDGAFGQ-----------------------GPCLESHGGSTYCALASLALMNKLDTLRPTQASLY  132 (361)
Q Consensus        76 ~~~~~~i~~i~~~q~~dGGF~~-----------------------~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~  132 (361)
                      ++.+++++||++||++|||||.                       .|+.|+|+++|||||++|.+|+.++....      
T Consensus       215 ~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~------  288 (520)
T 3q7a_B          215 ELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSF------  288 (520)
T ss_dssp             HHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTC------
T ss_pred             HHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhcccccccc------
Confidence            8899999999999999999999                       67999999999999999999998642100      


Q ss_pred             HhhhhhhcCChHhHHHHHHHHHHhc-----CCccccCCCCCCCccchhHHHHHHHHhhhh--------------------
Q psy6404         133 LDLVKSFLFYSPQIESLKRWLIFRQ-----RSGFQGRPNKPVDTCYTFWIGASLSILNAA--------------------  187 (361)
Q Consensus       133 l~~v~~~~~~~~~~~~~~~~l~~~Q-----dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~--------------------  187 (361)
                              ....+.+++++||..||     +|||+|+++|.+|+||+||+.++|.||+..                    
T Consensus       289 --------~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~  360 (520)
T 3q7a_B          289 --------PLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEE  360 (520)
T ss_dssp             --------SCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC-----------
T ss_pred             --------ccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccc
Confidence                    01347899999999999     399999999999999999999999999864                    


Q ss_pred             ------------ccccHHHHHHHHH-hccCCC---CCCCCCCCCCCchhhhhhhhhhccc
Q psy6404         188 ------------TWIDEERLLLSVL-DTQHMT---GGLSKWSDTQADILHTYLGEFFVRP  231 (361)
Q Consensus       188 ------------~~~~~~~~~~~I~-scQ~~d---GGf~~~p~~~s~~~~T~~ala~L~~  231 (361)
                                  ..+|.+++.+||+ .||+..   |||+..|+..+|.+|||++|++|..
T Consensus       361 ~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl  420 (520)
T 3q7a_B          361 KEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSI  420 (520)
T ss_dssp             ----------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Confidence                        1368899999999 699997   9999999999999999999999863

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=8.9e-39  Score=316.92  Aligned_cols=253  Identities=20%  Similarity=0.231  Sum_probs=226.2

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRAR   80 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~   80 (361)
                      .+.+.+|++|.+|.+| |..++..+++++++||+++|++||||.+.. ++.+++..||+|+.+|.+++..   ..+++++
T Consensus        99 ~r~~l~y~~l~aL~lL-g~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~-~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~k  176 (437)
T 2h6f_B           99 SRPWLCYWILHSLELL-DEPIPQIVATDVCQFLELCQSPEGGFGGGP-GQYPHLAPTYAAVNALCIIGTEEAYDIINREK  176 (437)
T ss_dssp             CHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHBCTTSSBBSST-TCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHH
T ss_pred             CCccHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhCCCCCCcCCcc-CCCcchhHHHHHHHHHHHhCCcccccchHHHH
Confidence            3567899999999999 777788889999999999999999999873 5678999999999999999853   5578999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R  158 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d  158 (361)
                      +++||+++|++||||++.+++++|+..||||+++|.+++..+.                    ..++++++||.++|  |
T Consensus       177 av~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~--------------------~~v~k~~~~L~s~Q~~D  236 (437)
T 2h6f_B          177 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITP--------------------DLFEGTAEWIARCQNWE  236 (437)
T ss_dssp             HHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCT--------------------TTTTTHHHHHHHHBCTT
T ss_pred             HHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCCh--------------------HHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999999987432                    25678999999999  9


Q ss_pred             CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccC-CCCCCCCCCCCCCchhhhhhhhhhccc--cc--
Q psy6404         159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLGEFFVRP--RI--  233 (361)
Q Consensus       159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~-~dGGf~~~p~~~s~~~~T~~ala~L~~--~~--  233 (361)
                      |||.++|+++++.++||||+++|.+++..+.++.+++++||++||. ++|||...|+..+|.-|||+++++|..  ..  
T Consensus       237 GGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~  316 (437)
T 2h6f_B          237 GGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH  316 (437)
T ss_dssp             SSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHH
T ss_pred             CCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999888999999999999999 799999999999999999999988742  11  


Q ss_pred             -----------chhhHHHHHHHHHH-hhc--CCCCCCCCCCCcccccchHHHHHHHhhc
Q psy6404         234 -----------IKTQIESLKRWLIF-RQR--SGFQGRPNKPVDTCYTFWIGASLSILNS  278 (361)
Q Consensus       234 -----------~~~~~~~l~~WL~~-rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~  278 (361)
                                 ...+.+++.+||.. .|.  |||..+|++.+|...+|+.+++|.+++.
T Consensus       317 ~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~  375 (437)
T 2h6f_B          317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQH  375 (437)
T ss_dssp             HTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHE
T ss_pred             cccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHHHHHhcc
Confidence                       12568999999986 343  9999999999999999999999999984

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.89  E-value=1.1e-21  Score=203.62  Aligned_cols=240  Identities=15%  Similarity=-0.001  Sum_probs=178.5

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCC-Cc------------ccccC-CCCCCchhHHHHHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPC-FS------------FKCTL-ADGDCDMRFVFCACSICYI   69 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~d-G~------------f~~~~-~~~~~d~~~ty~al~~l~l   69 (361)
                      +.+++|.+++.+|..+ |...+....++.++||++.|..+ |.            |.... ....++++.|.+++.+|..
T Consensus       309 s~vwdta~~l~AL~~~-G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~  387 (631)
T 2sqc_A          309 SPVWDTGLAVLALRAA-GLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNT  387 (631)
T ss_dssp             CHHHHHHHHHHHHHHT-TCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHH
Confidence            4578999999999999 75444556889999999988642 43            33211 1233678888888888887


Q ss_pred             hcCCC----cccHHHHHHHHHhcCCCCCCCCCCCCC-------------------ccCchhhHHHHHHHHHhcccccccc
Q psy6404          70 LDDWS----GMDRARCLEFIFRSLSYDGAFGQGPCL-------------------ESHGGSTYCALASLALMNKLDTLRP  126 (361)
Q Consensus        70 L~~~~----~~~~~~~i~~i~~~q~~dGGF~~~p~~-------------------~sh~~~Ty~Al~sL~llg~~~~~~~  126 (361)
                      ++...    ....+++++||+++|++||||+..+..                   .+++..|..++.+|..++.. .   
T Consensus       388 ~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~-~---  463 (631)
T 2sqc_A          388 LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD-D---  463 (631)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC-T---
T ss_pred             cCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCC-c---
Confidence            77531    235788999999999999999764321                   14566788899988888752 1   


Q ss_pred             chhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc----cccHHHHHHHHH
Q psy6404         127 TQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT----WIDEERLLLSVL  200 (361)
Q Consensus       127 ~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~----~~~~~~~~~~I~  200 (361)
                                     ....++++++||.+.|  ||||.+++    +++++|+...++..|....    ...++++++||+
T Consensus       464 ---------------~~~~i~rai~~L~~~Q~~DGsw~g~w----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~  524 (631)
T 2sqc_A          464 ---------------AWKVIRRAVEYLKREQKPDGSWFGRW----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVE  524 (631)
T ss_dssp             ---------------TSHHHHHHHHHHHHHCCTTSCCCCSS----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             ---------------cHHHHHHHHHHHHHhcCCCCCCCCCC----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence                           1246789999999888  99997765    3678887766666665432    356789999999


Q ss_pred             hccCCCCCCCCCC----------CCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCCCCCC---CCcc
Q psy6404         201 DTQHMTGGLSKWS----------DTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQGRPNK---PVDT  263 (361)
Q Consensus       201 scQ~~dGGf~~~p----------~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK---~~D~  263 (361)
                      +||++||||+..+          ..+++...|++||.+|..  ......++++++||.++|.  |||......   ...+
T Consensus       525 s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~  604 (631)
T 2sqc_A          525 QHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGD  604 (631)
T ss_dssp             HTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTT
T ss_pred             HhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCccccccccc
Confidence            9999999998643          456889999999999853  2234568899999999996  899876544   4467


Q ss_pred             cccc
Q psy6404         264 CYTF  267 (361)
Q Consensus       264 CYsf  267 (361)
                      ||--
T Consensus       605 ~yl~  608 (631)
T 2sqc_A          605 FYLG  608 (631)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            7765

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.85  E-value=3.4e-20  Score=195.07  Aligned_cols=247  Identities=14%  Similarity=0.040  Sum_probs=177.4

Q ss_pred             CchhHHHHHHHHHHccCCCCCC---hhhHHHHHHHHHhccCCC--------------CcccccCC-CCCCchhHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLA---LVYRLQISTSLRSFTTPC--------------FSFKCTLA-DGDCDMRFVFCACS   65 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~---~~~~~~~~~~L~~~Q~~d--------------G~f~~~~~-~~~~d~~~ty~al~   65 (361)
                      +.+++|..++++|.-. |..-+   ....++.++||+++|..+              |+|+.... .+.+++..|..++.
T Consensus       384 s~vwdTalal~AL~~a-g~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~  462 (732)
T 1w6k_A          384 SQIWDTAFAIQALLEA-GGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK  462 (732)
T ss_dssp             CHHHHHHHHHHHHHHT-TGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHc-CCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence            5689999999999988 52111   224678999999998765              88875532 23467778888888


Q ss_pred             HHHHhcC--------CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHH
Q psy6404          66 ICYILDD--------WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLA  116 (361)
Q Consensus        66 ~l~lL~~--------~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~  116 (361)
                      +|..+..        ......+++++||+++|++||||+....                     ..+++..|.++|.+|.
T Consensus       463 aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~  542 (732)
T 1w6k_A          463 AVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALK  542 (732)
T ss_dssp             HHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHH
T ss_pred             HHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHH
Confidence            8777642        2233468999999999999999964321                     1134567888999998


Q ss_pred             Hhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhcc----
Q psy6404         117 LMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATW----  189 (361)
Q Consensus       117 llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~----  189 (361)
                      .++.. +..+...             ....++++++||.++|  ||||.++++ ..++..|++++.+|.+++....    
T Consensus       543 ~~~~~~~~~~~~~-------------~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~  608 (732)
T 1w6k_A          543 YFHKRFPEHRAAE-------------IRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTA  608 (732)
T ss_dssp             HHHHHCTTSSHHH-------------HHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBC
T ss_pred             Hhccccccccchh-------------hHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccch
Confidence            88752 1111000             0235789999999988  999988654 3344556688888888876421    


Q ss_pred             -ccHHHHHHHHHhccCCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCC
Q psy6404         190 -IDEERLLLSVLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQ  254 (361)
Q Consensus       190 -~~~~~~~~~I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~  254 (361)
                       ..++++++||+++|+.||||+..          ++.+++...|++|+.+|..  ..+...++++++||.++|.  |||.
T Consensus       609 ~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~  688 (732)
T 1w6k_A          609 CAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWP  688 (732)
T ss_dssp             CHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCC
T ss_pred             hHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCcc
Confidence             35789999999999999999964          3566889999999999853  3345678899999999997  8998


Q ss_pred             CCCCC--CCcccc
Q psy6404         255 GRPNK--PVDTCY  265 (361)
Q Consensus       255 GR~nK--~~D~CY  265 (361)
                      -++..  ...+||
T Consensus       689 ~~~~~g~f~~~~~  701 (732)
T 1w6k_A          689 QENIAGVFNKSCA  701 (732)
T ss_dssp             CCSCCEEETTTEE
T ss_pred             CCcccccccchhh
Confidence            65532  345565

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.82  E-value=1.1e-18  Score=181.36  Aligned_cols=294  Identities=12%  Similarity=0.000  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHccCCCCCChhhHHHHHHHHHhc--cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC-CcccHHHHHHH
Q psy6404           8 VLETAVEVLEAVPPGVLALVYRLQISTSLRSF--TTPCFSFKCTLADGDCDMRFVFCACSICYILDDW-SGMDRARCLEF   84 (361)
Q Consensus         8 ~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~--Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~-~~~~~~~~i~~   84 (361)
                      .|+.++..|..+ |-+ +....+++++.+.+.  ..+||++....  ..+.++.|.+++.+|..++.. +....+++++|
T Consensus       264 ~~~~~~~~l~~~-g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~~~--~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~  339 (631)
T 2sqc_A          264 PWFYALIALKIL-DMT-QHPAFIKGWEGLELYGVELDYGGWMFQA--SISPVWDTGLAVLALRAAGLPADHDRLVKAGEW  339 (631)
T ss_dssp             HHHHHHHHHHHT-TCT-TSHHHHHHHHGGGGGEEECTTSCEEECS--SCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCC-CCHHHHHHHHHHHhceEEcCCCceeeCC--CCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            577889999999 744 444567777777775  35786665432  247788999999888888743 34568899999


Q ss_pred             HHhcCCCC-------------CCC--CCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHH
Q psy6404          85 IFRSLSYD-------------GAF--GQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESL  149 (361)
Q Consensus        85 i~~~q~~d-------------GGF--~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~  149 (361)
                      |.++|..+             |||  +..+...+++..|..++.+|..++..+..                .....++++
T Consensus       340 L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~----------------~~~~~l~~a  403 (631)
T 2sqc_A          340 LLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDER----------------RRRDAMTKG  403 (631)
T ss_dssp             HHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHH----------------HHHHHHHHH
T ss_pred             HHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccc----------------hhHHHHHHH
Confidence            99998643             332  22233456788899999999888762110                012367889


Q ss_pred             HHHHHHhc--CCccccCCCC----------------C---CCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhccCCCC
Q psy6404         150 KRWLIFRQ--RSGFQGRPNK----------------P---VDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTG  207 (361)
Q Consensus       150 ~~~l~~~Q--dGgF~~~~~~----------------~---~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ~~dG  207 (361)
                      ++||.++|  ||||...+..                .   .++..|..++.+|..++.. ....++++++||+++|++||
T Consensus       404 ~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DG  483 (631)
T 2sqc_A          404 FRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDG  483 (631)
T ss_dssp             HHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCC
Confidence            99999988  8999642110                1   2333455566666666531 12457899999999999999


Q ss_pred             CCCCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHH
Q psy6404         208 GLSKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGAS  272 (361)
Q Consensus       208 Gf~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~  272 (361)
                      ||....+. .+...|..++.+|..   ......++++++||.++|.  |||...+          ...+|+..++|++.+
T Consensus       484 sw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALla  562 (631)
T 2sqc_A          484 SWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMA  562 (631)
T ss_dssp             CCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHH
Confidence            99543332 244556666666642   1234578999999999997  8884322          234677889999999


Q ss_pred             HHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCC----------ChHHHHHHHHHhc
Q psy6404         273 LSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQA----------DILHTYLEAMSHA  322 (361)
Q Consensus       273 L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p~~~~----------D~~hT~~a~~sl~  322 (361)
                      |..++.......++..+||+++|+++|||...+....          ..|.+++.+.+|.
T Consensus       563 L~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~  622 (631)
T 2sqc_A          563 LIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALG  622 (631)
T ss_dssp             HHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHH
Confidence            9998875433346789999999999999988765422          3466777776654

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.76  E-value=1.6e-17  Score=174.76  Aligned_cols=278  Identities=13%  Similarity=-0.006  Sum_probs=184.8

Q ss_pred             HHHHHHHHHccCCCCCChhhHHHHHHHHHhc--cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCC----cccHHHHH
Q psy6404           9 LETAVEVLEAVPPGVLALVYRLQISTSLRSF--TTPCFSFKCTLADGDCDMRFVFCACSICYILDDWS----GMDRARCL   82 (361)
Q Consensus         9 t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~--Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~----~~~~~~~i   82 (361)
                      ....+..+... |  .+.....++++.|.+.  ..+||.+....  ..+.++.|-+++.+|...+...    ....++++
T Consensus       341 ~l~~l~~~~~~-G--~~~~~~~~~l~~l~~~l~~~~dG~~~q~~--~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~  415 (732)
T 1w6k_A          341 TINMLVRWYVD-G--PASTAFQEHVSRIPDYLWMGLDGMKMQGT--NGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAH  415 (732)
T ss_dssp             HHHHHHHHHHH-C--TTSHHHHHHHHTSGGGEEEETTEEEECSS--SCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhc-C--CCCHHHHHHHHHHHHhheeCCCCceeCCC--CCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHH
Confidence            34444445444 4  3333466677777764  56777654321  1256777777776666555321    23468999


Q ss_pred             HHHHhcCCCC--------------CCCCCCCC--CccCchhhHHHHHHHHHhccccc-cccchhhhhHhhhhhhcCChHh
Q psy6404          83 EFIFRSLSYD--------------GAFGQGPC--LESHGGSTYCALASLALMNKLDT-LRPTQASLYLDLVKSFLFYSPQ  145 (361)
Q Consensus        83 ~~i~~~q~~d--------------GGF~~~p~--~~sh~~~Ty~Al~sL~llg~~~~-~~~~~~~~~l~~v~~~~~~~~~  145 (361)
                      +||+++|..+              |||+....  ..+++..|..++.+|..+...+. ...             ......
T Consensus       416 ~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~-------------~~~~~~  482 (732)
T 1w6k_A          416 EFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTE-------------HIPRER  482 (732)
T ss_dssp             HHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCS-------------CCCHHH
T ss_pred             HHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccc-------------hhhHHH
Confidence            9999999866              88766542  45688889999999988764321 000             012346


Q ss_pred             HHHHHHHHHHhc--CCccccCC----------------CCCCCcc--c---hhHHHHHHHHhhhhc--------cccHHH
Q psy6404         146 IESLKRWLIFRQ--RSGFQGRP----------------NKPVDTC--Y---TFWIGASLSILNAAT--------WIDEER  194 (361)
Q Consensus       146 ~~~~~~~l~~~Q--dGgF~~~~----------------~~~~D~~--~---ty~a~~~L~ll~~~~--------~~~~~~  194 (361)
                      ++++++||.++|  ||||....                .+...+.  +   |..++.+|..++...        ...+++
T Consensus       483 i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~r  562 (732)
T 1w6k_A          483 LCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQ  562 (732)
T ss_dssp             HHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHH
Confidence            789999999988  99995321                1111122  3   334566666665421        234789


Q ss_pred             HHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--c-cch----hhHHHHHHHHHHhhc--CCCCCCC--------
Q psy6404         195 LLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--R-IIK----TQIESLKRWLIFRQR--SGFQGRP--------  257 (361)
Q Consensus       195 ~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~-~~~----~~~~~l~~WL~~rQ~--gGF~GR~--------  257 (361)
                      +++||+++|++||||....+. .+...|++++.+|..  . ...    ..++++++||.++|.  ||+....        
T Consensus       563 Av~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y  641 (732)
T 1w6k_A          563 GLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY  641 (732)
T ss_dssp             HHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSC
T ss_pred             HHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCcccccccc
Confidence            999999999999999875543 344567777777742  1 112    468999999999997  8887542        


Q ss_pred             --CCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404         258 --NKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS  305 (361)
Q Consensus       258 --nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p  305 (361)
                        .+.+|.+.+.|++-+|..++..+....++..+||+++|+++|||...+
T Consensus       642 ~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~  691 (732)
T 1w6k_A          642 VQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQEN  691 (732)
T ss_dssp             CBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCc
Confidence              446788999999988877775433344678999999999999998655

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.40  E-value=3.6e-12  Score=119.06  Aligned_cols=161  Identities=12%  Similarity=0.001  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R  156 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~  156 (361)
                      .++.+++++++|++||||+.+++..++...|-+++.+|..+.....+                 +...++++++||.. +
T Consensus        40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v-----------------~~~~i~~a~~~L~~~~  102 (277)
T 1qqf_A           40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAI-----------------DSQVLCGAVKWLILEK  102 (277)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC-----------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCC-----------------CHHHHHHHHHHHHHhc
Confidence            44455669999999999999998888999999999999888764222                 23467899999995 8


Q ss_pred             c--CCccccCCCC-------------CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCC---------
Q psy6404         157 Q--RSGFQGRPNK-------------PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHM---------  205 (361)
Q Consensus       157 Q--dGgF~~~~~~-------------~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~---------  205 (361)
                      |  ||+|.+...-             +.+..+|..++.+|...+..       ....++++++||.++++.         
T Consensus       103 Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~  182 (277)
T 1qqf_A          103 QKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAI  182 (277)
T ss_dssp             BCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             cCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence            8  9999875421             11233344555555444321       123467899999999774         


Q ss_pred             ------------------------CCCCCCCCCCCC-chhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         206 ------------------------TGGLSKWSDTQA-DILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       206 ------------------------dGGf~~~p~~~s-~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                                              +|++-..|+..+ ....|.+||.+|........++++++||.++|.  |||..
T Consensus       183 ~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~s  259 (277)
T 1qqf_A          183 AGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGS  259 (277)
T ss_dssp             HHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeec
Confidence                                    344444444321 445688888887543344578899999999876  78876

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.38  E-value=2.3e-12  Score=122.41  Aligned_cols=174  Identities=14%  Similarity=0.013  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R  156 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~  156 (361)
                      .++.+++++++|++||||+.+++..++...|-+++.+|..+.....+                 +...++++++||.. +
T Consensus        56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v-----------------~~~~i~~a~~~L~~~~  118 (310)
T 2wy7_A           56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAI-----------------DSQVLCGAVKWLILEK  118 (310)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC-----------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHhh
Confidence            44556669999999999999998888889999999999888764222                 23467899999995 8


Q ss_pred             c--CCccccCCCC-------------CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCC---------
Q psy6404         157 Q--RSGFQGRPNK-------------PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHM---------  205 (361)
Q Consensus       157 Q--dGgF~~~~~~-------------~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~---------  205 (361)
                      |  ||+|.+...-             +.+..+|..++.+|...+..       ....++++++||.+||+.         
T Consensus       119 Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~  198 (310)
T 2wy7_A          119 QKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAI  198 (310)
T ss_dssp             BCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHH
T ss_pred             cCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence            8  9999875421             12233344555555444321       123467899999999874         


Q ss_pred             ------------------------CCCCCCCCCCCC-chhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCCCCC
Q psy6404         206 ------------------------TGGLSKWSDTQA-DILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPN  258 (361)
Q Consensus       206 ------------------------dGGf~~~p~~~s-~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~n  258 (361)
                                              +|++-..++..+ ....|.+||.+|........++++++||.++|.  |||...  
T Consensus       199 ~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sT--  276 (310)
T 2wy7_A          199 AGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST--  276 (310)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTCH--
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecc--
Confidence                                    334433333221 445788888887543334578899999999876  788653  


Q ss_pred             CCCcccccchHHHH
Q psy6404         259 KPVDTCYTFWIGAS  272 (361)
Q Consensus       259 K~~D~CYsfW~~a~  272 (361)
                        -||....+.++-
T Consensus       277 --q~T~~aL~AL~~  288 (310)
T 2wy7_A          277 --QATFMVFQALAQ  288 (310)
T ss_dssp             --HHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHH
Confidence              455544444433

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.30  E-value=5.1e-11  Score=111.20  Aligned_cols=173  Identities=12%  Similarity=0.079  Sum_probs=110.6

Q ss_pred             HHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCCCCC------
Q psy6404          32 ISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQGPCL------  101 (361)
Q Consensus        32 ~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~p~~------  101 (361)
                      .++++.++|++||||+... +..++++.|-+++.++......   +....+++++||.+ .|++||+|.+....      
T Consensus        43 g~~~~l~~q~~dGgf~~f~-~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~  121 (277)
T 1qqf_A           43 GYTQQLAFKQPISAYAAFN-NRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI  121 (277)
T ss_dssp             HHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHhcCCCCCccccC-CCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence            3444888999999998873 4567888888888888887643   22346789999995 99999999654311      


Q ss_pred             -------ccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc---------------
Q psy6404         102 -------ESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---------------  157 (361)
Q Consensus       102 -------~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q---------------  157 (361)
                             ++.+..|..++.+|...+...  .+.+               ..+.++++++||..++               
T Consensus       122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~---------------~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayA  186 (277)
T 1qqf_A          122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNS---------------LPGSINKAGEYLEASYLNLQRPYTVAIAGYA  186 (277)
T ss_dssp             GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTT---------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CCCCCCccCccchHHHHHHHHHhhhhccccCCCc---------------hHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence                   123445666677665553210  0000               0124555666665443               


Q ss_pred             --------------------CCccccCCCCC-CCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC
Q psy6404         158 --------------------RSGFQGRPNKP-VDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ  216 (361)
Q Consensus       158 --------------------dGgF~~~~~~~-~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~  216 (361)
                                          +|+|...++.. .++..|-|++.++...+.  ..+.+++++||.+.|+++|||...    
T Consensus       187 l~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT----  260 (277)
T 1qqf_A          187 LALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGST----  260 (277)
T ss_dssp             HHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTCH----
T ss_pred             HHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc----
Confidence                                23333332211 144556566666655543  467899999999999999999764    


Q ss_pred             Cchhhhhhhhhhc
Q psy6404         217 ADILHTYLGEFFV  229 (361)
Q Consensus       217 s~~~~T~~ala~L  229 (361)
                         -.|..||-+|
T Consensus       261 ---q~T~~aL~AL  270 (277)
T 1qqf_A          261 ---QATFMVFQAL  270 (277)
T ss_dssp             ---HHHHHHHHHH
T ss_pred             ---hHHHHHHHHH
Confidence               3666776665

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.24  E-value=1e-10  Score=111.00  Aligned_cols=174  Identities=13%  Similarity=0.070  Sum_probs=110.1

Q ss_pred             HHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCCCCC-----
Q psy6404          31 QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQGPCL-----  101 (361)
Q Consensus        31 ~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~p~~-----  101 (361)
                      +.++++.++|++||||+... +..++++.|-+++.++......   +....+++++||.+ .|++||+|.+....     
T Consensus        58 ~g~~~~l~~q~~dGgf~~f~-~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~  136 (310)
T 2wy7_A           58 KGYTQQLAFRQPSSAFAAFV-KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM  136 (310)
T ss_dssp             HHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHhcCCCCCcccCC-CCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhh
Confidence            34555889999999998874 4567888888888888877643   22346789999996 99999999654311     


Q ss_pred             --------ccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--------------
Q psy6404         102 --------ESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--------------  157 (361)
Q Consensus       102 --------~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--------------  157 (361)
                              ++.+..|..++.+|...+...  .+.+               ..+.++++++||..++              
T Consensus       137 ~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~---------------~~~~i~~A~~~L~~~~~~~~~~y~~a~~ay  201 (310)
T 2wy7_A          137 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS---------------LPGSITKAGDFLEANYMNLQRSYTVAIAGY  201 (310)
T ss_dssp             GGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTT---------------HHHHHHHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred             cCCcccccccccchHHHHHHHHHhcccccccCCcc---------------hHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence                    123445666677665553210  0000               0123445555555433              


Q ss_pred             ---------------------CCccccCCCCC-CCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCC
Q psy6404         158 ---------------------RSGFQGRPNKP-VDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDT  215 (361)
Q Consensus       158 ---------------------dGgF~~~~~~~-~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~  215 (361)
                                           +|+|...++.. .++..|-|++.++...+.  ..+.+++++||.+.|+++|||...   
T Consensus       202 AL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT---  276 (310)
T 2wy7_A          202 ALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGST---  276 (310)
T ss_dssp             HHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTCH---
T ss_pred             HHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc---
Confidence                                 23343332211 144556666666655553  467899999999999999999653   


Q ss_pred             CCchhhhhhhhhhc
Q psy6404         216 QADILHTYLGEFFV  229 (361)
Q Consensus       216 ~s~~~~T~~ala~L  229 (361)
                          -.|..||-+|
T Consensus       277 ----q~T~~aL~AL  286 (310)
T 2wy7_A          277 ----QATFMVFQAL  286 (310)
T ss_dssp             ----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHH
Confidence                3566666665

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.05  E-value=1e-09  Score=106.65  Aligned_cols=89  Identities=11%  Similarity=0.043  Sum_probs=64.3

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHhcCCCCCCCCCCCCC-----
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFRSLSYDGAFGQGPCL-----  101 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~p~~-----  101 (361)
                      ++.++||.++|++||||+... +...+.+.|-+++..|...+..   +....+++++||.+.|++||+|...-..     
T Consensus        94 ~~g~~~ll~~Q~~dGgf~~~~-~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~  172 (367)
T 1hzf_A           94 QKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  172 (367)
T ss_dssp             HHHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHhccCCCCCeeccC-CCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence            556889999999999998763 3456788888888877776632   2345788999999999999999764211     


Q ss_pred             -------ccCchhhHHHHHHHHHhc
Q psy6404         102 -------ESHGGSTYCALASLALMN  119 (361)
Q Consensus       102 -------~sh~~~Ty~Al~sL~llg  119 (361)
                             ++.+..|.+++.+|...+
T Consensus       173 ~gg~~~~~~~~~lTA~vl~aL~~~g  197 (367)
T 1hzf_A          173 QGGLVGNDETVALTAFVTIALHHGL  197 (367)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcccccchHHHHHHHHhhh
Confidence                   223556777777776544

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.01  E-value=2.2e-09  Score=104.19  Aligned_cols=161  Identities=16%  Similarity=0.083  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ  157 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q  157 (361)
                      .++.+++|+++|++||||+..++..++...|.+++-.|..++..-.                 .+...++++++||.++|
T Consensus        93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~-----------------v~~~~i~~a~~~L~~~Q  155 (367)
T 1hzf_A           93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG-----------------GSPEKLQETSNWLLSQQ  155 (367)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTC-----------------CCHHHHHHHHHHHGGGB
T ss_pred             HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHHhh
Confidence            6678899999999999999888766777778888888877775311                 12346789999999888


Q ss_pred             --CCccccCCCC------------CCCccchhHHHHHHHHhhhh------------ccccHHHHHHHHHhc--cC-----
Q psy6404         158 --RSGFQGRPNK------------PVDTCYTFWIGASLSILNAA------------TWIDEERLLLSVLDT--QH-----  204 (361)
Q Consensus       158 --dGgF~~~~~~------------~~D~~~ty~a~~~L~ll~~~------------~~~~~~~~~~~I~sc--Q~-----  204 (361)
                        ||+|.++...            ++++..|.+++.+|...+..            ....++++++||.++  ++     
T Consensus       156 ~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y  235 (367)
T 1hzf_A          156 QADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAH  235 (367)
T ss_dssp             CTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred             ccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHH
Confidence              9999875321            12344456676666544321            112357788998776  21     


Q ss_pred             -------------------------------CCCC---CCCCC---------------------CCCC-chhhhhhhhhh
Q psy6404         205 -------------------------------MTGG---LSKWS---------------------DTQA-DILHTYLGEFF  228 (361)
Q Consensus       205 -------------------------------~dGG---f~~~p---------------------~~~s-~~~~T~~ala~  228 (361)
                                                     .+|+   |+...                     ...+ ..-.|.+||.+
T Consensus       236 ~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLa  315 (367)
T 1hzf_A          236 AAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLH  315 (367)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHH
Confidence                                           1444   43311                     0111 45677888888


Q ss_pred             ccc-ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         229 VRP-RIIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       229 L~~-~~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      |.. ..+.....++++||.+.|.  |||..
T Consensus       316 ll~~~~~~~~~~~iv~WL~~qrn~~Ggw~s  345 (367)
T 1hzf_A          316 LLLHEGKAEMADQASAWLTRQGSFQGGFRS  345 (367)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHTTSTTCSCS
T ss_pred             HHhccCchhhhHHHHHHHHhCcCCCCCccc
Confidence            742 2233467899999998664  77764

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=98.72  E-value=1.1e-07  Score=106.39  Aligned_cols=161  Identities=14%  Similarity=0.017  Sum_probs=102.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ  157 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q  157 (361)
                      .++.+++++++|++||||+.+++..++...|.+++.+|..+......                .+...++++++||..+|
T Consensus       874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~----------------v~~~~l~~a~~~L~~~q  937 (1325)
T 2pn5_A          874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISD----------------IDAAMVEKALDWLASKQ  937 (1325)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSC----------------SCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEc----------------CCHHHHHHHHHHHHhhh
Confidence            34455567999999999999999889999999999999888653210                12345788999999887


Q ss_pred             --CCccccCCC-------CCCCccchhHH--HHHHHHhhhhc---cccHHHHHHHHHhccCC-CCCCCCC----------
Q psy6404         158 --RSGFQGRPN-------KPVDTCYTFWI--GASLSILNAAT---WIDEERLLLSVLDTQHM-TGGLSKW----------  212 (361)
Q Consensus       158 --dGgF~~~~~-------~~~D~~~ty~a--~~~L~ll~~~~---~~~~~~~~~~I~scQ~~-dGGf~~~----------  212 (361)
                        ||+|.+...       +..+.+.+|.+  +.+|.-.+...   ...++++++||.++|+. +++++..          
T Consensus       938 ~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g 1017 (1325)
T 2pn5_A          938 HFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNG 1017 (1325)
T ss_dssp             CTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHT
T ss_pred             ccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcC
Confidence              899977532       22333444443  33332222221   13467788999988776 6665321          


Q ss_pred             -C------------------------CCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCC
Q psy6404         213 -S------------------------DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQ  254 (361)
Q Consensus       213 -p------------------------~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~  254 (361)
                       +                        ...+..-.|.+||.+|..........++++||.++|.  |||.
T Consensus      1018 ~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~ 1086 (1325)
T 2pn5_A         1018 HTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFP 1086 (1325)
T ss_dssp             CTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCS
T ss_pred             CchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhccchhhHHHHHHHHhccCCCCCcc
Confidence             0                        0012334566777666433334467889999976544  5554

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.57  E-value=7e-07  Score=96.33  Aligned_cols=208  Identities=14%  Similarity=0.109  Sum_probs=121.4

Q ss_pred             HHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCCCC------
Q psy6404          31 QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQGPC------  100 (361)
Q Consensus        31 ~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~p~------  100 (361)
                      +.++++..+|++||||+... +..++.+.|-+++..+..+...   ...-.+++++||.+ .|++||+|.....      
T Consensus       303 ~g~~rll~~Q~~DGsfs~w~-~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m  381 (915)
T 2hr0_B          303 KGYTQQLAFRQPSSAFAAFV-KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM  381 (915)
T ss_dssp             HHHHHHGGGCCTTTCCBSSS-SSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCC
T ss_pred             HHHHHHHHhhcCCCCccccC-CCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhh
Confidence            34566888999999999874 4467888888888877766532   22347889999995 9999999854321      


Q ss_pred             --C-----ccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCc
Q psy6404         101 --L-----ESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDT  171 (361)
Q Consensus       101 --~-----~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~  171 (361)
                        +     ++.+..|.+++.+|...+...  .+.+               ....+.++++||..+++. .       .+.
T Consensus       382 ~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~---------------~~~~i~~A~~yL~~~~~~-~-------~~~  438 (915)
T 2hr0_B          382 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS---------------LPGSITKAGDFLEANYMN-L-------QRS  438 (915)
T ss_dssp             CCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTT---------------HHHHHHHHHHHHHHHGGG-C-------CSH
T ss_pred             cCCccCccccccccHHHHHHHHHhcccccccCccc---------------chHHHHHHHHHHHHhhhc-c-------CCH
Confidence              1     123455666777776665420  0000               023567889999876521 0       111


Q ss_pred             cchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCC-CCCCCCCC-CchhhhhhhhhhcccccchhhHHHHHHHHHHhh
Q psy6404         172 CYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGG-LSKWSDTQ-ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ  249 (361)
Q Consensus       172 ~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGG-f~~~p~~~-s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ  249 (361)
                      ...-.+..+|.+.+.   . .+.+++.|.++.. +|. |.. ++.. ++.-.|.+||.+|........+.++++||.++|
T Consensus       439 y~~a~layAL~l~g~---~-a~~~l~~L~~~~~-~~~~w~~-~~~~~~~ve~TayaLlall~~~~~~~~~~~v~wL~~qq  512 (915)
T 2hr0_B          439 YTVAIAGYALAQMGR---L-KGPLLNKFLTTAK-DKNRWED-PGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQR  512 (915)
T ss_dssp             HHHHHHHHHHHTTTC---C-CHHHHHHHHHTSB-TTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCC---h-HHHHHHHHHhhcc-CCCCCCC-CCCCccchHHHHHHHHHHHhcCChhhHHHHHHHHHhcc
Confidence            111112223444442   2 4556666777554 333 322 2221 245567888887753323345788999999876


Q ss_pred             c--CCCCCCCCCCCcccccchHHHH
Q psy6404         250 R--SGFQGRPNKPVDTCYTFWIGAS  272 (361)
Q Consensus       250 ~--gGF~GR~nK~~D~CYsfW~~a~  272 (361)
                      .  |||..-    -||.+..++++.
T Consensus       513 ~~~Ggw~ST----QdT~~Al~AL~~  533 (915)
T 2hr0_B          513 YYGGGYGST----QATFMVFQALAQ  533 (915)
T ss_dssp             CSSSSCCSH----HHHHHHHHHHHH
T ss_pred             cCCCCccch----hhHHHHHHHHHH
Confidence            4  666542    445444444433

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.52  E-value=1.6e-06  Score=97.61  Aligned_cols=220  Identities=10%  Similarity=0.008  Sum_probs=134.8

Q ss_pred             HHHHHHHHhccCCCCcccccCCC---CCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCC-C---
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLAD---GDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQG-P---   99 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~---~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~-p---   99 (361)
                      ++.++|+..+|++||||+.....   ...+.+.|-+++..|.....   ......+++++||.+.|++||+|... +   
T Consensus       986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A          986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp             HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred             HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence            35678888899999999976321   34788888888888887653   23345888999999999999998632 1   


Q ss_pred             ----CC-ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccch
Q psy6404         100 ----CL-ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYT  174 (361)
Q Consensus       100 ----~~-~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~t  174 (361)
                          ++ +.++..|.+++.+|...+....                   ...++++++||..+-+. +... ....+....
T Consensus      1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~-------------------~~~i~~A~~~L~~~~~~-~~~~-~~~~~~y~~ 1124 (1451)
T 4acq_A         1066 NAIKGGVEDEVTLSAYITIALLEIPLTVT-------------------HPVVRNALFCLESAWKT-AQEG-DHGSHVYTK 1124 (1451)
T ss_dssp             GGGCCSCSCHHHHHHHHHHHHHHTTCCTT-------------------CHHHHHHHHHHHHHHHH-HTSS-CSSSTHHHH
T ss_pred             hhhcCCCCCCccchHHHHHHHHHcCCCCC-------------------CHHHHHHHHHHHHhhhh-cccc-cccCChHHH
Confidence                11 3456678888888887775211                   23578899999854211 1000 000112222


Q ss_pred             hHHHHHHHHhhhhccccHHHHHHHHHhccCCCCC---CCCCCC------------C-CCchhhhhhhhhhccccc-----
Q psy6404         175 FWIGASLSILNAATWIDEERLLLSVLDTQHMTGG---LSKWSD------------T-QADILHTYLGEFFVRPRI-----  233 (361)
Q Consensus       175 y~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGG---f~~~p~------------~-~s~~~~T~~ala~L~~~~-----  233 (361)
                      ..+..+|.+.+..  ...+.+.+-|.+....+||   |+....            . ....-.|.+||.++....     
T Consensus      1125 AllAyAlal~g~~--~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~ 1202 (1451)
T 4acq_A         1125 ALLAYAFALAGNQ--DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTS 1202 (1451)
T ss_dssp             HHHHHHHHHHTCH--HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCH
T ss_pred             HHHHHHHHhcCCh--hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccc
Confidence            2344456665532  1233456666666666666   332111            0 123456888888875321     


Q ss_pred             -chhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404         234 -IKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSIL  276 (361)
Q Consensus       234 -~~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L  276 (361)
                       +.....++++||.++|.  |||..-    -||++.+-+++-+..+
T Consensus      1203 ~d~~~a~~iv~WL~~qr~~~Ggf~ST----QdTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A         1203 EDLTSATNIVKWITKQQNAQGGFSST----QDTVVALHALSKYGAA 1244 (1451)
T ss_dssp             HHHHHHHTTHHHHTTCCCTTSCCSSH----HHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHcCCCCCCcccH----HHHHHHHHHHHHHHHh
Confidence             23456788999987664  777653    4777777777666554

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.48  E-value=1.3e-06  Score=94.22  Aligned_cols=206  Identities=13%  Similarity=-0.013  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R  156 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~  156 (361)
                      .++.++++++.|++||||+.+++..++...|-+++..|..+.....                 .+...++++++||.. +
T Consensus       301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~-----------------v~~~~i~~al~~L~~~~  363 (915)
T 2hr0_B          301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIA-----------------IDSQVLCGAVKWLILEK  363 (915)
T ss_dssp             HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSC-----------------CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCC-----------------CCHHHHHHHHHHHHHhh
Confidence            4456777999999999999998877777888888887777664322                 123467889999994 7


Q ss_pred             c--CCccccCCC--------C-----CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCCC-CCCCCCC
Q psy6404         157 Q--RSGFQGRPN--------K-----PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHMT-GGLSKWS  213 (361)
Q Consensus       157 Q--dGgF~~~~~--------~-----~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~d-GGf~~~p  213 (361)
                      |  +|+|.+...        +     +.+...|.+++.+|...+..       ....+.++++||.+.+..- +++    
T Consensus       364 Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y----  439 (915)
T 2hr0_B          364 QKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSY----  439 (915)
T ss_dssp             BCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHH----
T ss_pred             ccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHH----
Confidence            7  899975431        1     12233344555555544332       1123568899999987641 110    


Q ss_pred             CCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCC-CCCCCCC-CCcccccchHHHHHHHhhccCcccHHHHHHHH
Q psy6404         214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSG-FQGRPNK-PVDTCYTFWIGASLSILNSATWIDEERLLLSV  291 (361)
Q Consensus       214 ~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gG-F~GR~nK-~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~i  291 (361)
                         + .....+|++.. ..  .  .+.+++.|.....+| +-.+... ..|.--+-|++-+|...+  ......++.+||
T Consensus       440 ---~-~a~layAL~l~-g~--~--a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~--~~~~~~~~v~wL  508 (915)
T 2hr0_B          440 ---T-VAIAGYALAQM-GR--L--KGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLK--DFDFVPPVVRWL  508 (915)
T ss_dssp             ---H-HHHHHHHHHTT-TC--C--CHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTT--CTTTHHHHHHHH
T ss_pred             ---H-HHHHHHHHHHc-CC--h--HHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcC--ChhhHHHHHHHH
Confidence               0 11112233221 11  1  345566666543222 1111110 011111123333333333  333456788999


Q ss_pred             HhccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         292 LDTQHMTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       292 l~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                      ...|+..|||...       ..|.+|+.+|+
T Consensus       509 ~~qq~~~Ggw~ST-------QdT~~Al~AL~  532 (915)
T 2hr0_B          509 NEQRYYGGGYGST-------QATFMVFQALA  532 (915)
T ss_dssp             HTCCCSSSSCCSH-------HHHHHHHHHHH
T ss_pred             HhcccCCCCccch-------hhHHHHHHHHH
Confidence            9999999999763       45777765554

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=98.47  E-value=1.4e-06  Score=97.52  Aligned_cols=64  Identities=8%  Similarity=0.065  Sum_probs=50.8

Q ss_pred             HHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC----CcccHHHHHHHHHhcCCCCCCCCC
Q psy6404          33 STSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW----SGMDRARCLEFIFRSLSYDGAFGQ   97 (361)
Q Consensus        33 ~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~----~~~~~~~~i~~i~~~q~~dGGF~~   97 (361)
                      ++++.++|++||||+... +..++.+.|.+++.+|..+...    +..-.+++++||.+.|++||.|.+
T Consensus       878 ~~rll~~q~~dGgf~~f~-~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~  945 (1325)
T 2pn5_A          878 YQNQMRYRQTDGSFGLWE-TTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDK  945 (1325)
T ss_dssp             HHHHGGGBCTTSCBCSSS-SSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred             HHHHHhcCCCCCCeeccC-CCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence            445588999999999884 5567899999999988887532    223467899999999999999855

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=98.22  E-value=4.8e-06  Score=80.78  Aligned_cols=174  Identities=10%  Similarity=-0.028  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhccCCCCcccccCCC-------------------------------------CCCchhHHHHHHHHHHHhc
Q psy6404          29 RLQISTSLRSFTTPCFSFKCTLAD-------------------------------------GDCDMRFVFCACSICYILD   71 (361)
Q Consensus        29 ~~~~~~~L~~~Q~~dG~f~~~~~~-------------------------------------~~~d~~~ty~al~~l~lL~   71 (361)
                      .+++.+.|...|+++|||.-+.+-                                     ...|...|...+..|.-+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            578999999999999999643110                                     0122333444444444332


Q ss_pred             CC-C-------cccHHHHHHHHHhcCCCCCCCCCCCCC----ccCch----hhHHHHHHHHHhccc-cccccchhhhhHh
Q psy6404          72 DW-S-------GMDRARCLEFIFRSLSYDGAFGQGPCL----ESHGG----STYCALASLALMNKL-DTLRPTQASLYLD  134 (361)
Q Consensus        72 ~~-~-------~~~~~~~i~~i~~~q~~dGGF~~~p~~----~sh~~----~Ty~Al~sL~llg~~-~~~~~~~~~~~l~  134 (361)
                      .. .       ..-..++++||+++|.+||||+.+--.    -.|+.    .|-..|..|..++.. ..+      .|++
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~------~~~~  236 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGF------GFVP  236 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTC------TTSC
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcc------cccc
Confidence            21 1       223578999999999999999877321    12222    233344444443321 111      0000


Q ss_pred             h-hhhhcCChHhHHHHHHHHHHhc---CCccccCCCC--CCCc-----cc-----hhHHHHHH----HHhhhhcc-----
Q psy6404         135 L-VKSFLFYSPQIESLKRWLIFRQ---RSGFQGRPNK--PVDT-----CY-----TFWIGASL----SILNAATW-----  189 (361)
Q Consensus       135 ~-v~~~~~~~~~~~~~~~~l~~~Q---dGgF~~~~~~--~~D~-----~~-----ty~a~~~L----~ll~~~~~-----  189 (361)
                      . .+.  .....++++++||+..|   ||.+. +++.  ...+     +-     +.++..+.    .++..-..     
T Consensus       237 ~~~~~--~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~  313 (408)
T 1r76_A          237 PAIRT--RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVK  313 (408)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHH
T ss_pred             hhhhh--hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHH
Confidence            0 000  01235688999999888   78876 4321  0111     11     22332222    22222111     


Q ss_pred             ccHHHHHHHHHhccCCCCCCCC
Q psy6404         190 IDEERLLLSVLDTQHMTGGLSK  211 (361)
Q Consensus       190 ~~~~~~~~~I~scQ~~dGGf~~  211 (361)
                      ..++++++||.++|+.||+|-.
T Consensus       314 ~aI~~Av~WL~s~Q~~dg~w~~  335 (408)
T 1r76_A          314 QAIRGGVAWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHHHHHHHHHHHSCCCC-----
T ss_pred             HHHHHHHHHHHHhhcCCCceee
Confidence            1378999999999999999874

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.20  E-value=2.9e-05  Score=87.35  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCC----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHH
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPC----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWL  153 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l  153 (361)
                      .++.+++++++|++||||+.++.    ..++...|-+++-.|......-.                 .+...++++++||
T Consensus       985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~-----------------v~~~~l~~a~~wL 1047 (1451)
T 4acq_A          985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIF-----------------IDEAHITQALIWL 1047 (1451)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSC-----------------CCTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcc-----------------cCHHHHHHHHHHH
Confidence            45678999999999999998864    34677778888888877665311                 1334688999999


Q ss_pred             HHhc--CCccccC--C------CC-CCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhc
Q psy6404         154 IFRQ--RSGFQGR--P------NK-PVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDT  202 (361)
Q Consensus       154 ~~~Q--dGgF~~~--~------~~-~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~sc  202 (361)
                      ..+|  ||+|...  .      ++ +.++..|..++.+|...+.. ....++++++||.++
T Consensus      1048 ~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A         1048 SQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp             HHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred             HhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence            9888  9999742  1      11 23444465666666655532 123367899999976

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.08  E-value=3.7e-06  Score=79.37  Aligned_cols=169  Identities=11%  Similarity=0.014  Sum_probs=92.5

Q ss_pred             HHHHHHhccCCCCcccccCC------------CCCCchhHHHHHHHHHHHhcCC-----CcccHHHHHHHHHhcCCCCCC
Q psy6404          32 ISTSLRSFTTPCFSFKCTLA------------DGDCDMRFVFCACSICYILDDW-----SGMDRARCLEFIFRSLSYDGA   94 (361)
Q Consensus        32 ~~~~L~~~Q~~dG~f~~~~~------------~~~~d~~~ty~al~~l~lL~~~-----~~~~~~~~i~~i~~~q~~dGG   94 (361)
                      +.+-|...|+++|||.-...            ....|...|...+..|.-+...     ...-.+++++||+++|.+|||
T Consensus        36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG  115 (332)
T 1gxm_A           36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA  115 (332)
T ss_dssp             GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred             HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence            46677778999999976421            0113444455555554433211     123367899999999999999


Q ss_pred             CCCCC-C---CccCch----hhHHHHHHHHHhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404          95 FGQGP-C---LESHGG----STYCALASLALMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG  163 (361)
Q Consensus        95 F~~~p-~---~~sh~~----~Ty~Al~sL~llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~  163 (361)
                      |+++- .   ...|+.    .|-.+|..|..++.. ....   .+.|++.-.  ......++++++||+..|  +||+.+
T Consensus       116 WpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~---~~~~~~~~~--~~~~~av~Rgid~Llk~Qe~dggw~g  190 (332)
T 1gxm_A          116 LPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFD---TDVFSDNDR--TRFKTAVTKGTDYILKAQWKQNGVLT  190 (332)
T ss_dssp             CBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSC---STTSCHHHH--HHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred             ccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCcc---ccccccchh--hhhHHHHHHHHHHHHHhhCccCCCcC
Confidence            98872 1   122332    244555555555421 0000   000000000  001235789999999999  999888


Q ss_pred             CCCCC--CCccc----------hhHH---HHHHHHhhhhccc-----cHHHHHHHHHhccCC
Q psy6404         164 RPNKP--VDTCY----------TFWI---GASLSILNAATWI-----DEERLLLSVLDTQHM  205 (361)
Q Consensus       164 ~~~~~--~D~~~----------ty~a---~~~L~ll~~~~~~-----~~~~~~~~I~scQ~~  205 (361)
                      +++..  ..+..          +.++   +.++..|-..+..     .++++++|+.++|++
T Consensus       191 ~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~  252 (332)
T 1gxm_A          191 VWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY  252 (332)
T ss_dssp             CCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred             eeccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence            76532  12222          3332   2232223222211     378899999999995

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=97.97  E-value=0.0004  Score=73.38  Aligned_cols=109  Identities=12%  Similarity=0.035  Sum_probs=70.1

Q ss_pred             HHHHHHHHHccCCC--CCChhhHHHHHHH-------HHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---Ccc
Q psy6404           9 LETAVEVLEAVPPG--VLALVYRLQISTS-------LRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGM   76 (361)
Q Consensus         9 t~~al~~L~~L~g~--~l~~~~~~~~~~~-------L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~   76 (361)
                      +.+++..|... +.  .++...+++..++       +.+.|++||||+... +.+++++.|-+++..+......   ...
T Consensus       342 ~i~v~~yl~~t-~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~-~~~~s~wLTAyV~~~l~~A~~~i~id~~  419 (767)
T 4fxk_B          342 TLAASRYLDKT-EQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQVGGSPE  419 (767)
T ss_dssp             HHHHHHHHHHT-CTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSS-SSCBCHHHHHHHHHHHHHTCSSSSCCHH
T ss_pred             hhhHHHHHHhh-hhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC-CCCCCchhHHHHHHHHHHHHhhcCcchH
Confidence            44555556555 22  1333334444444       455799999999873 4567899998999888877643   334


Q ss_pred             cHHHHHHHHHhcCCCCCCCCCCC------------CCccCchhhHHHHHHHHHhc
Q psy6404          77 DRARCLEFIFRSLSYDGAFGQGP------------CLESHGGSTYCALASLALMN  119 (361)
Q Consensus        77 ~~~~~i~~i~~~q~~dGGF~~~p------------~~~sh~~~Ty~Al~sL~llg  119 (361)
                      ...+++.|+.+.|.+||.|...-            +.+..+..|.+.+.+|.-.+
T Consensus       420 ~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~  474 (767)
T 4fxk_B          420 KLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGL  474 (767)
T ss_dssp             HHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcC
Confidence            57788999999999999985321            11223455666666665433

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=97.96  E-value=0.00037  Score=79.62  Aligned_cols=202  Identities=11%  Similarity=0.012  Sum_probs=111.6

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-hc--
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-RQ--  157 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~Q--  157 (361)
                      .++-+++.|++||||+.+++.+++.+.|-+++-.|..+.....                 .+...+.++++||.. +|  
T Consensus      1051 g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~-----------------v~~~~l~~a~~~L~~~~q~~ 1113 (1661)
T 2b39_A         1051 GYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIA-----------------IDSKDLCETVKWLILEKQKP 1113 (1661)
T ss_dssp             HHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-----------------CCHHHHHHHHHHHHHHTBCT
T ss_pred             HHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhccc-----------------CCHHHHHHHHHHhhHhhCCC
Confidence            4455678999999999998877888889888888887765322                 133467899999995 77  


Q ss_pred             CCccccCC--------CC-----CCCccchhHHHHHHHHhhhh-----c--cccHHHHHHHHHhccCCCCCCCCCCCCCC
Q psy6404         158 RSGFQGRP--------NK-----PVDTCYTFWIGASLSILNAA-----T--WIDEERLLLSVLDTQHMTGGLSKWSDTQA  217 (361)
Q Consensus       158 dGgF~~~~--------~~-----~~D~~~ty~a~~~L~ll~~~-----~--~~~~~~~~~~I~scQ~~dGGf~~~p~~~s  217 (361)
                      +|.|....        ++     +.+...|.+++.+|.-.+..     +  ...++++.+||.+....   +   ... -
T Consensus      1114 ~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~---~~~-y 1186 (1661)
T 2b39_A         1114 DGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L---RRP-Y 1186 (1661)
T ss_dssp             TSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C---CSH-H
T ss_pred             CCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c---CCH-H
Confidence            88885321        11     11444444555555443321     0  12346788999875332   0   000 0


Q ss_pred             chhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCCCCcccccch----HHHHHHHhhccCcccHHHHHHHHHh
Q psy6404         218 DILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW----IGASLSILNSATWIDEERLLLSVLD  293 (361)
Q Consensus       218 ~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK~~D~CYsfW----~~a~L~~L~~~~~~~~~~~~~~il~  293 (361)
                      ..+.+.+|++.. ..  .  .+.++++|.++..+|-.-+..+.    .+.-    ..+.|.++..........+.+||..
T Consensus      1187 ~~A~layAL~l~-g~--~--a~~~l~~L~~~~~~~~~W~~~~~----~~~~vE~tayaLlall~~~~~~~~~~iv~wL~~ 1257 (1661)
T 2b39_A         1187 TVAIAAYALALL-GK--L--EGDRLTKFLNTAKEKNRWEEPNQ----KLYNVEATSYALLALLARKDYDTTPPVVRWLNE 1257 (1661)
T ss_dssp             HHHHHHHHHHHT-TC--C--CHHHHHHHHHHSBTTTBCCCSSC----HHHHHHHHHHHHHHHHHHTCTTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CC--c--HHHHHHHHHhhccCCCCCCCCCC----CcchHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Confidence            011222333322 21  1  35566777665432210000000    0001    1233344433333344678899998


Q ss_pred             ccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404         294 TQHMTGGLSKWSDTQADILHTYLEAMSHA  322 (361)
Q Consensus       294 ~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~  322 (361)
                      .|+..|||...       .-|.+|+.+|+
T Consensus      1258 qr~~~gg~~ST-------qdT~~Al~AL~ 1279 (1661)
T 2b39_A         1258 QRYYGGGYGST-------QATFMVFQALA 1279 (1661)
T ss_dssp             CCTBTTBBCSH-------HHHHHHHHHHH
T ss_pred             cccCCCCcccc-------hHHHHHHHHHH
Confidence            88888999863       55666665443

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=97.87  E-value=0.00018  Score=82.24  Aligned_cols=203  Identities=14%  Similarity=0.110  Sum_probs=113.2

Q ss_pred             HHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCC-C-------C---
Q psy6404          36 LRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQG-P-------C---  100 (361)
Q Consensus        36 L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~-p-------~---  100 (361)
                      +...|++||+|+... +.+.++|.|-+++..+..+...   +..-.+++++||.+ .|++||.|... +       +   
T Consensus      1055 ~l~~q~~dGsfs~w~-~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~ 1133 (1661)
T 2b39_A         1055 QLAFRQKSSAYAAFQ-YRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFR 1133 (1661)
T ss_dssp             HHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTT
T ss_pred             HHHhhcCCCCccccC-CCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCcc
Confidence            445799999999874 4567899999999888877643   23346889999995 99999998532 1       1   


Q ss_pred             --CccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccchhH
Q psy6404         101 --LESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW  176 (361)
Q Consensus       101 --~~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~ty~  176 (361)
                        .++++..|..++.+|.-.+...  ...+               ....+.++++||..+-+.        ..+....-.
T Consensus      1134 ~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~---------------~~~~i~~a~~yL~~~~~~--------~~~~y~~A~ 1190 (1661)
T 2b39_A         1134 DTREKDVSLTAFVLIALHEAKDICEAQVNS---------------LGRSIAKAGDFLENHYRE--------LRRPYTVAI 1190 (1661)
T ss_dssp             CCTTSSHHHHHHHHHHHHHTTTTTTTTCSS---------------HHHHHHHHHHHHHHHTTT--------CCSHHHHHH
T ss_pred             ccccCccccHHHHHHHHHhccccccccCcc---------------hhHHHHHHHHHHHHhhhc--------cCCHHHHHH
Confidence              1124555666666665544321  0000               023567788998754211        011111112


Q ss_pred             HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC-CchhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCC
Q psy6404         177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ-ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGF  253 (361)
Q Consensus       177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~-s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF  253 (361)
                      +..+|.+.+..    .+.+++.|.+... +|.+-..++.. .+.-.|.+||.++...-......++++||.+.|.  |||
T Consensus      1191 layAL~l~g~~----a~~~l~~L~~~~~-~~~~W~~~~~~~~~vE~tayaLlall~~~~~~~~~~iv~wL~~qr~~~gg~ 1265 (1661)
T 2b39_A         1191 AAYALALLGKL----EGDRLTKFLNTAK-EKNRWEEPNQKLYNVEATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGY 1265 (1661)
T ss_dssp             HHHHHHHTTCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTTTSHHHHHHHHHCCTBTTBB
T ss_pred             HHHHHHHcCCc----HHHHHHHHHhhcc-CCCCCCCCCCCcchHHHHHHHHHHHHhcCChhhHHHHHHHHHhcccCCCCc
Confidence            23344444432    4555666665443 33321222211 1344667777776432223346788999988653  666


Q ss_pred             CCCCCCCCcccccchHHH
Q psy6404         254 QGRPNKPVDTCYTFWIGA  271 (361)
Q Consensus       254 ~GR~nK~~D~CYsfW~~a  271 (361)
                      ..-    -||.+...+++
T Consensus      1266 ~ST----qdT~~Al~AL~ 1279 (1661)
T 2b39_A         1266 GST----QATFMVFQALA 1279 (1661)
T ss_dssp             CSH----HHHHHHHHHHH
T ss_pred             ccc----hHHHHHHHHHH
Confidence            542    45544444333

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=97.67  E-value=0.00034  Score=79.93  Aligned_cols=214  Identities=12%  Similarity=0.083  Sum_probs=117.8

Q ss_pred             hHHHHHHHH-------HhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCC
Q psy6404          28 YRLQISTSL-------RSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFG   96 (361)
Q Consensus        28 ~~~~~~~~L-------~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~   96 (361)
                      .+++.++++       ...|++||+|+.. .+...++|.|-+++..+..+...   +..-.+++++||.+ .|++||.|.
T Consensus      1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w-~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1119 (1676)
T 3cu7_A         1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVW-KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFK 1119 (1676)
T ss_dssp             HHHHHHHHHHHHHHHGGGGBCTTSCBCSS-SSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBC
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCcccc-CCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCccc
Confidence            355565554       3578999999987 45567899999999888876532   33446789999999 999999985


Q ss_pred             CCC--------CC------ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccc
Q psy6404          97 QGP--------CL------ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQ  162 (361)
Q Consensus        97 ~~p--------~~------~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~  162 (361)
                      ...        ++      ++++..|.+++.+|.-.+......+               ....+.++++||..+-+.   
T Consensus      1120 ~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~---------------~~~~i~~a~~yL~~~~~~--- 1181 (1676)
T 3cu7_A         1120 ENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK---------------IDTALIKADNFLLENTLP--- 1181 (1676)
T ss_dssp             CCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHH---------------HHHHHHHHHHHHHHHHSS---
T ss_pred             CCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcc---------------cHHHHHHHHHHHHHhhhc---
Confidence            321        10      0134445555555544332100000               012466788888654221   


Q ss_pred             cCCCCCCCccchh-HHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCC---C--CCC------C---C--Cchhhhhhh
Q psy6404         163 GRPNKPVDTCYTF-WIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS---K--WSD------T---Q--ADILHTYLG  225 (361)
Q Consensus       163 ~~~~~~~D~~~ty-~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~---~--~p~------~---~--s~~~~T~~a  225 (361)
                           ..+. |+- .+..+|.+.+... ...+.+.+.|.+....+|+.+   +  .+.      .   .  .+.-.|.+|
T Consensus      1182 -----~~~~-y~~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~taya 1254 (1676)
T 3cu7_A         1182 -----AQST-FTLAISAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYA 1254 (1676)
T ss_dssp             -----CSCH-HHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHH
T ss_pred             -----cCCH-HHHHHHHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHH
Confidence                 0111 221 1222344444321 114566677776655444421   1  110      0   1  133356777


Q ss_pred             hhhcccccchhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHH
Q psy6404         226 EFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGA  271 (361)
Q Consensus       226 la~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a  271 (361)
                      |.++..........++++||.+.|.  |||..-    -||.+...+++
T Consensus      1255 Llall~~~~~~~~~~iv~wL~~qr~~~Gg~~ST----QdT~~Al~AL~ 1298 (1676)
T 3cu7_A         1255 LLTSLNLKDINYVNPVIKWLSEEQRYGGGFYST----QDTINAIEGLT 1298 (1676)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSCSSSCCSTT----TTHHHHHHHHH
T ss_pred             HHHHHhcCChhHHHHHHHHHHhccCCCCCcccc----HHHHHHHHHHH
Confidence            7776433334457788999987654  677653    56654444333

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=97.64  E-value=0.00062  Score=77.86  Aligned_cols=191  Identities=15%  Similarity=-0.030  Sum_probs=104.2

Q ss_pred             HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-hc--CCc
Q psy6404          84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-RQ--RSG  160 (361)
Q Consensus        84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~Q--dGg  160 (361)
                      -+++.|++||||+.+++.+++.+.|-+++-.|..+...-.                 .+...+.++++||.. +|  +|.
T Consensus      1055 r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~-----------------v~~~~l~~a~~~L~~~~q~~~g~ 1117 (1676)
T 3cu7_A         1055 SIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVE-----------------QNQNSICNSLLWLVENYQLDNGS 1117 (1676)
T ss_dssp             HGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSC-----------------CCHHHHHHHHHHHHHHSBCTTSC
T ss_pred             HHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhccc-----------------CCHHHHHHHHHHHHHhhCCCCCc
Confidence            3567899999999997777888889888888877765322                 133467889999998 77  888


Q ss_pred             cccCC---CCC-----------CCccchhHHHHHHHHhhhh-----ccccHHHHHHHHHhccCCCCCCCCCCCCCCchhh
Q psy6404         161 FQGRP---NKP-----------VDTCYTFWIGASLSILNAA-----TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILH  221 (361)
Q Consensus       161 F~~~~---~~~-----------~D~~~ty~a~~~L~ll~~~-----~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~  221 (361)
                      |....   +.+           .+...|.+++.+|.-.+..     .....+++.+||.+....   +       .+...
T Consensus      1118 f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~ 1187 (1676)
T 3cu7_A         1118 FKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFT 1187 (1676)
T ss_dssp             BCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHH
T ss_pred             ccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHH
Confidence            86421   110           1233344444444333321     012356788999775331   0       11111


Q ss_pred             hhhhhh--hcccccchh-hHHHHHHHHHHhhc--CC-----CCCCCCCCCcccccc-h---------HHHHHHHhhccCc
Q psy6404         222 TYLGEF--FVRPRIIKT-QIESLKRWLIFRQR--SG-----FQGRPNKPVDTCYTF-W---------IGASLSILNSATW  281 (361)
Q Consensus       222 T~~ala--~L~~~~~~~-~~~~l~~WL~~rQ~--gG-----F~GR~nK~~D~CYsf-W---------~~a~L~~L~~~~~  281 (361)
                        .|++  +|...-... ..+++++.|.++..  ++     +=..+.+..+ -|+| |         ..+.|.++.....
T Consensus      1188 --~A~lA~Al~l~g~~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~ve~tayaLlall~~~~~ 1264 (1676)
T 3cu7_A         1188 --LAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKD-SSVPNTGTARMVETTAYALLTSLNLKDI 1264 (1676)
T ss_dssp             --HHHHHHHHTTSCTTCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCS-SCCCSCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             --HHHHHHHHHhcCCchhhHHHHHHHHHhhhhhccCCccccCCCCCCCCcc-ccccCCCccchHHHHHHHHHHHHhcCCh
Confidence              1222  122211222 26677788876543  32     2111111111 1121 1         1233444444332


Q ss_pred             ccHHHHHHHHHhccCCCCCcCCC
Q psy6404         282 IDEERLLLSVLDTQHMTGGLSKW  304 (361)
Q Consensus       282 ~~~~~~~~~il~~Q~~~GGf~~~  304 (361)
                      .+...+..||...|+..|||...
T Consensus      1265 ~~~~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A         1265 NYVNPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp             HHHHHHHHHHHHHSCSSSCCSTT
T ss_pred             hHHHHHHHHHHhccCCCCCcccc
Confidence            23356789998888888999874

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=97.61  E-value=9.2e-05  Score=71.82  Aligned_cols=92  Identities=14%  Similarity=0.043  Sum_probs=58.6

Q ss_pred             CCCchhHHHHHHHHHHccCCCCCC-------hhhHHHHHHHHHhccCCCCcccccCCCCC--------CchhHHHHHHHH
Q psy6404           2 STAEEAVLETAVEVLEAVPPGVLA-------LVYRLQISTSLRSFTTPCFSFKCTLADGD--------CDMRFVFCACSI   66 (361)
Q Consensus         2 ~~~~~~~t~~al~~L~~L~g~~l~-------~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~--------~d~~~ty~al~~   66 (361)
                      +|.|..+|...|..|.-+ ....+       ....++.++||..+|.++|||+.+.+...        +|=. +--.|..
T Consensus       144 ~T~DnddTa~vl~aL~rv-~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDv-t~rvle~  221 (408)
T 1r76_A          144 GTIDNDATVTEIRFLAQV-VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDA-LVHVAEL  221 (408)
T ss_dssp             SBCGGGTTHHHHHHHHHH-HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGH-HHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHH-HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHH-HHHHHHH
Confidence            577888999999999887 22101       12246889999999999999987744221        2211 1122222


Q ss_pred             HHHhcC------C--------CcccHHHHHHHHHhcCCC-CCCC
Q psy6404          67 CYILDD------W--------SGMDRARCLEFIFRSLSY-DGAF   95 (361)
Q Consensus        67 l~lL~~------~--------~~~~~~~~i~~i~~~q~~-dGGF   95 (361)
                      |..++.      +        ...-.+++++||++.|.+ ||..
T Consensus       222 L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw  265 (408)
T 1r76_A          222 LSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKR  265 (408)
T ss_dssp             HHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEE
T ss_pred             HHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCcc
Confidence            222221      0        123467899999999999 8874

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=97.52  E-value=0.0023  Score=67.54  Aligned_cols=69  Identities=19%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ  157 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q  157 (361)
                      .+..++-+++.|++||||+.+++..++...|-+++-+|........                 .+...+..++.||..+|
T Consensus       370 l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~-----------------id~~~i~~a~~wL~~~Q  432 (767)
T 4fxk_B          370 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG-----------------GSPEKLQETSNWLLSQQ  432 (767)
T ss_dssp             HHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSS-----------------CCHHHHHHHHHHHHHTB
T ss_pred             HHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcC-----------------cchHHHHHHHHHHHHhh
Confidence            3445666788999999999998888888888888888887765422                 23446788999999888


Q ss_pred             --CCcccc
Q psy6404         158 --RSGFQG  163 (361)
Q Consensus       158 --dGgF~~  163 (361)
                        +|+|..
T Consensus       433 ~~~G~f~e  440 (767)
T 4fxk_B          433 QADGSFQD  440 (767)
T ss_dssp             CTTSCBCC
T ss_pred             hhcccchh
Confidence              888863

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=97.51  E-value=0.0016  Score=68.98  Aligned_cols=111  Identities=15%  Similarity=0.035  Sum_probs=67.6

Q ss_pred             HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404         199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN  277 (361)
Q Consensus       199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~  277 (361)
                      |...|..||.|..+|      ..|++++..-.      + +++.+||..-...+=.|.|+- +.|.--.-|.+-+|.-||
T Consensus       246 ~~~~q~~~GS~~~SP------saTAa~l~~~~------d-~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLG  312 (817)
T 3sdr_A          246 IMEVQSQDGSFLSSP------ASTACVFMHTG------D-AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLG  312 (817)
T ss_dssp             GGGGCCTTSCBTTBH------HHHHHHHHHHC------C-HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTT
T ss_pred             HHhccCCCCCcccCH------HHHHHHHHhCC------C-hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcC
Confidence            677888888888876      46777665422      1 466777754322111146665 666644559999999999


Q ss_pred             ccCcccH--HHHHHHHHhccCCCCCcCC-CCCCCCChHHHHHHH--HHhcc
Q psy6404         278 SATWIDE--ERLLLSVLDTQHMTGGLSK-WSDTQADILHTYLEA--MSHAS  323 (361)
Q Consensus       278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~-~p~~~~D~~hT~~a~--~sl~~  323 (361)
                      -...+..  +.+.+.|..+-... |+.- .++..+|++.|.++.  +-+.+
T Consensus       313 i~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~G  362 (817)
T 3sdr_A          313 IYRHFEKEIKEALDYVYRHWNER-GIGWGRLNPIADLETTALGFRLLRLHR  362 (817)
T ss_dssp             CGGGGHHHHHHHHHHHHHHCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTT
T ss_pred             CccccHHHHHHHHHHHHHHhhhc-ccccccCCCCCCHHHHHHHHHHHHHcC
Confidence            7654444  35566665443332 3332 244468999999875  44444

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=97.35  E-value=2.9e-05  Score=88.12  Aligned_cols=196  Identities=12%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             HHHHHHHHH-------hccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC----CCcccHHHHHHHHHh-cCCCCCCCC
Q psy6404          29 RLQISTSLR-------SFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD----WSGMDRARCLEFIFR-SLSYDGAFG   96 (361)
Q Consensus        29 ~~~~~~~L~-------~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~----~~~~~~~~~i~~i~~-~q~~dGGF~   96 (361)
                      +++.+++|+       +.|++||||+... +.+.++|.|-+++..+.....    .+..-.+++++||.+ +|++||.|.
T Consensus      1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~-~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~ 1103 (1642)
T 3prx_B         1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFT-NRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFK 1103 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeecCC-CCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccc
Confidence            445555544       4788999999873 345788888888877776543    333457889999998 899999994


Q ss_pred             CCC--------C----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccC
Q psy6404          97 QGP--------C----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGR  164 (361)
Q Consensus        97 ~~p--------~----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~  164 (361)
                      ...        |    .+.++..|-+.+.+|.-.+.....   .       +.   -....+++++.||...-+.     
T Consensus      1104 e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~---~-------~~---~~~~~i~~a~~~L~~~~~~----- 1165 (1642)
T 3prx_B         1104 ENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICND---Y-------VN---SLDSSIKKATNYLLKKYEK----- 1165 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccchhccCCccCCCCcccchHHHHHHHHhccccccc---c-------cc---cchHHHHHHHHHHHHhhhc-----
Confidence            421        1    133455565555544333221000   0       00   0012467788888643111     


Q ss_pred             CCCCCCccchhH-HHH--HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC-CchhhhhhhhhhcccccchhhHHH
Q psy6404         165 PNKPVDTCYTFW-IGA--SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ-ADILHTYLGEFFVRPRIIKTQIES  240 (361)
Q Consensus       165 ~~~~~D~~~ty~-a~~--~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~-s~~~~T~~ala~L~~~~~~~~~~~  240 (361)
                            ....|. |+.  +|.+.+..   +.+.+..+...    ++-+-..|+.. .+.-.|.+||.++...-.......
T Consensus      1166 ------~~~~Y~~Ai~aYAl~l~~~~---~~~~l~~l~~~----~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~~~a~~ 1232 (1642)
T 3prx_B         1166 ------LQRPYTTALTAYALAAADQL---NDDRVLMAAST----GRDHWEEYNAHTHNIEGTSYALLALLKMKKFDQTGP 1232 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------CCCHHHHHHHHHHHHhcCCc---hHHHHHHHHhc----CCCCCCCCCCchHHHHHHHHHHHHHhccCchhhHHH
Confidence                  111221 222  33334432   11112122111    11111123222 355678899888754323345678


Q ss_pred             HHHHHHHhhc--CCCCCC
Q psy6404         241 LKRWLIFRQR--SGFQGR  256 (361)
Q Consensus       241 l~~WL~~rQ~--gGF~GR  256 (361)
                      .++||.++|.  |||..-
T Consensus      1233 iv~WL~~qr~~~Ggf~ST 1250 (1642)
T 3prx_B         1233 IVRWLTDQNFYGETYGQT 1250 (1642)
T ss_dssp             ------------------
T ss_pred             HHHHHHHhccCCCcccCc
Confidence            8999998765  888763

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=97.30  E-value=1.7e-05  Score=74.89  Aligned_cols=93  Identities=9%  Similarity=-0.075  Sum_probs=60.1

Q ss_pred             CCCchhHHHHHHHHHHccCCCCC-C---hhhHHHHHHHHHhccCCCCcccccCCCCC--------CchhHHHHHHHHHHH
Q psy6404           2 STAEEAVLETAVEVLEAVPPGVL-A---LVYRLQISTSLRSFTTPCFSFKCTLADGD--------CDMRFVFCACSICYI   69 (361)
Q Consensus         2 ~~~~~~~t~~al~~L~~L~g~~l-~---~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~--------~d~~~ty~al~~l~l   69 (361)
                      +|.|..+|...|..|.-+ ...- +   ....++.++||..+|.++|||+.+.+...        +|= .+-=.|..|..
T Consensus        69 ~t~DnddTa~vl~~Larv-~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDD-vtarvLelL~~  146 (332)
T 1gxm_A           69 GTIDNGATITEMVFLAEV-YKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDN-GMAYALTVLDF  146 (332)
T ss_dssp             EECGGGTTHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGG-HHHHHHHHHHH
T ss_pred             CCccCccHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchH-HHHHHHHHHHH
Confidence            477888999999999876 2100 1   12246889999999999999998743221        221 12223333333


Q ss_pred             hcC----C------------CcccHHHHHHHHHhcCCCCCCCC
Q psy6404          70 LDD----W------------SGMDRARCLEFIFRSLSYDGAFG   96 (361)
Q Consensus        70 L~~----~------------~~~~~~~~i~~i~~~q~~dGGF~   96 (361)
                      ++.    +            .....+++++||++.|-++||.-
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~  189 (332)
T 1gxm_A          147 AANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVL  189 (332)
T ss_dssp             HHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEE
T ss_pred             HHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCc
Confidence            321    1            11336789999999999999853

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=97.28  E-value=0.0032  Score=66.14  Aligned_cols=112  Identities=13%  Similarity=-0.027  Sum_probs=68.5

Q ss_pred             HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404         199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN  277 (361)
Q Consensus       199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~  277 (361)
                      |...|..||+|..+|      ..|++++..-.       -+++.+||.+-...+=.|.|+- +.|.--.-|.+-+|.-||
T Consensus       194 ~~~~~~~~GS~~~SP------saTAa~l~~~~-------d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLG  260 (764)
T 3p5p_A          194 IMRFQSKDGSFLSSP------ASTACVLMNTG-------DEKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLG  260 (764)
T ss_dssp             GGGGBCTTSCBTTBH------HHHHHHHHHHC-------CHHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHhccCCCCCcccCh------HHHHHHHHhCC-------ChhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcC
Confidence            677888889888877      46777765422       1466777754322111156665 666644559999999999


Q ss_pred             ccCcccH--HHHHHHHHhccCCCCCcCC-CCCCCCChHHHHHHH--HHhccc
Q psy6404         278 SATWIDE--ERLLLSVLDTQHMTGGLSK-WSDTQADILHTYLEA--MSHASR  324 (361)
Q Consensus       278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~-~p~~~~D~~hT~~a~--~sl~~~  324 (361)
                      -...+..  +.+.+.|..+-... |+.- .++..+|++.|.++.  +-+.+.
T Consensus       261 i~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy  311 (764)
T 3p5p_A          261 IGRHFKQEIKGALDYVYRHWSER-GIGWGRDSLVPDLNTTALGLRTLRMHGY  311 (764)
T ss_dssp             CGGGGHHHHHHHHHHHHHTCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CccccHHHHHHHHHHHHHHhhhc-ccccccCCCCCCHHHHHHHHHHHHhcCC
Confidence            7654444  35666665543332 3332 234468999999875  444443

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=97.21  E-value=0.0037  Score=60.86  Aligned_cols=140  Identities=6%  Similarity=-0.097  Sum_probs=85.2

Q ss_pred             HHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcC
Q psy6404          62 CACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF  141 (361)
Q Consensus        62 ~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~  141 (361)
                      +++.+|++--.-. .-..+.+..+...|+ +++|..+  ...++-.|-.|+.+|..++..... +...    +.+     
T Consensus       139 ~sL~vLALC~~g~-~v~~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~-~~~~----~~i-----  204 (414)
T 2bb6_A          139 YSLGILALCVHQK-RVHDSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLN-PKQR----NRI-----  204 (414)
T ss_dssp             HHHHHHHHHHTTC-CCCHHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSC-GGGH----HHH-----
T ss_pred             HHHHHHHHHHcCC-CccHHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCC-cchH----HHH-----
Confidence            4555555532211 224456666666665 4566422  223577888888888888752211 1100    000     


Q ss_pred             ChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhcc---ccHHHHHHHHHhccCCCCCCCCCCCCC
Q psy6404         142 YSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATW---IDEERLLLSVLDTQHMTGGLSKWSDTQ  216 (361)
Q Consensus       142 ~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~---~~~~~~~~~I~scQ~~dGGf~~~p~~~  216 (361)
                       ..-++.++++|...|  ||+|.       +...|-.|+.+|...+....   .+..+++++|++ |..||+|+      
T Consensus       205 -~~al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~------  269 (414)
T 2bb6_A          205 -NLALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ------  269 (414)
T ss_dssp             -HHHHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC------
T ss_pred             -HHHHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC------
Confidence             112334447777666  89994       45668889999988765211   256779999999 99999997      


Q ss_pred             Cchhhhhhhhhhccc
Q psy6404         217 ADILHTYLGEFFVRP  231 (361)
Q Consensus       217 s~~~~T~~ala~L~~  231 (361)
                       +...|+-++-+|..
T Consensus       270 -np~ataQ~lpaL~g  283 (414)
T 2bb6_A          270 -NPLMISQLLPVLNQ  283 (414)
T ss_dssp             -SHHHHHHHHHHTTT
T ss_pred             -ChHHHHHHHHHhcC
Confidence             44678888877753

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=97.18  E-value=0.017  Score=60.93  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404         199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN  277 (361)
Q Consensus       199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~  277 (361)
                      |+..|..||.|..+|      ..|++++.--.      + +++.+||.+-+..+=.|-|+- +.|.--.-|.+-+|.-||
T Consensus       218 v~~~q~~~GS~~~SP------saTAa~l~~~~------d-~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLG  284 (785)
T 3s9v_A          218 IMKLQSKDGSFLSSP------ASTAAVFMRTG------N-KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLG  284 (785)
T ss_dssp             HHTTCCTTSCBTTBH------HHHHHHHHHHC------C-HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred             HHhccCCCCCcccCH------HHHHHHHHhCC------C-hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcC
Confidence            557888899998887      46777765321      1 466777755332111256665 566644459999999999


Q ss_pred             ccCcccH--HHHHHHHHhccCCCCCcCCCCC-CCCChHHHHHHH--HHhccc
Q psy6404         278 SATWIDE--ERLLLSVLDTQHMTGGLSKWSD-TQADILHTYLEA--MSHASR  324 (361)
Q Consensus       278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~~p~-~~~D~~hT~~a~--~sl~~~  324 (361)
                      -...+..  +.+.++|..+-... |++-.++ ..+|++.|.++.  +-+.+.
T Consensus       285 i~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy  335 (785)
T 3s9v_A          285 IDRHFKEEIKEALDYVYSHWDER-GIGWARENPVPDIDDTAMGLRILRLHGY  335 (785)
T ss_dssp             CGGGGHHHHHHHHHHHHTTCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CccccHHHHHHHHHHHHHHhhhc-cccccccCCCCCHHHHHHHHHHHHhcCC
Confidence            7654443  35666665443322 3433332 357999999874  444443

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=96.98  E-value=0.025  Score=59.00  Aligned_cols=112  Identities=20%  Similarity=0.138  Sum_probs=67.3

Q ss_pred             HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404         199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN  277 (361)
Q Consensus       199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~  277 (361)
                      +..-|..||.|..+|      ..|++++..-       .-+++.++|.+-...+-.|-|+- +.|.--.-|.+-+|.-||
T Consensus       193 ~~~~q~~~GS~~~SP------saTAa~l~~~-------~d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLG  259 (727)
T 3pya_A          193 LLKLQSQDGSFLFSP------SSTAFAFMQT-------RDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLG  259 (727)
T ss_dssp             HGGGCCTTSSBTTBH------HHHHHHHHHH-------CCHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred             HhcccCCCCCcccCH------HHHHHHHhcC-------CCHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcC
Confidence            345566788888776      4677766531       12466777765443233466765 677644459999999999


Q ss_pred             ccCcccH--HHHHHHHHhccCCCCCcCCCCC-CCCChHHHHHHH--HHhccc
Q psy6404         278 SATWIDE--ERLLLSVLDTQHMTGGLSKWSD-TQADILHTYLEA--MSHASR  324 (361)
Q Consensus       278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~~p~-~~~D~~hT~~a~--~sl~~~  324 (361)
                      -...+..  +.+.+.|..+-... |+...++ ..+|++.|.++.  +-+.+.
T Consensus       260 Is~hFe~EI~~~L~~i~~~~~~~-g~~~~~~~~~~DL~~tAL~FRLLRqhGy  310 (727)
T 3pya_A          260 ISRYFEEEIKECLDYVHRYWTDN-GICWARCSHVQDIDDTAMAFRLLRQHGY  310 (727)
T ss_dssp             CGGGGHHHHHHHHHHHHHTCCTT-CCCSSSSCSCCCHHHHHHHHHHHHHTTC
T ss_pred             CccccHHHHHHHHHHHHHHhhhc-CcccccCCCCCCHHHHHHHHHHHHhCCC
Confidence            7654444  35666665543322 3322232 368999999874  444443

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=96.97  E-value=0.0011  Score=64.63  Aligned_cols=97  Identities=10%  Similarity=-0.127  Sum_probs=66.0

Q ss_pred             CCCchhHHHHHHHHHHccCCCC-CChh---hHH----HHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC
Q psy6404           2 STAEEAVLETAVEVLEAVPPGV-LALV---YRL----QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW   73 (361)
Q Consensus         2 ~~~~~~~t~~al~~L~~L~g~~-l~~~---~~~----~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~   73 (361)
                      ++.++-.|..|+.+|.++ +++ ...-   ..+    .++++|.+.|++||+|+.        +..|-.|+.+|...+..
T Consensus       174 ~~~sVDT~AMA~lAL~C~-~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN--------~~ST~lA~QAL~~~~~~  244 (414)
T 2bb6_A          174 DHVSVDTMAMAGMAFSCL-ELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGN--------VYSTPLALQLLMGSLRP  244 (414)
T ss_dssp             TTTHHHHHHHHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS--------TTTHHHHHHHHTTCSSC
T ss_pred             CcccccHHHHHHHHHHHH-hhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccc--------hhhHHHHHHHHHhcCCC
Confidence            345788999999999999 542 2111   123    344788888999999963        22355666666555543


Q ss_pred             Cc---ccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHH
Q psy6404          74 SG---MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASL  115 (361)
Q Consensus        74 ~~---~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL  115 (361)
                      ..   .+..+++++|++ |.+||+|.       +...|.-++.+|
T Consensus       245 ~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lpaL  281 (414)
T 2bb6_A          245 SVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLPVL  281 (414)
T ss_dssp             CHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHHHh
Confidence            22   367789999999 99999997       235666666644

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=96.23  E-value=0.00073  Score=76.72  Aligned_cols=107  Identities=16%  Similarity=0.068  Sum_probs=0.0

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-hc-
Q psy6404          80 RCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-RQ-  157 (361)
Q Consensus        80 ~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~Q-  157 (361)
                      ..++-+++.|++||||+.+.+.+++.+.|-+++-+|......-..                ++...+.++++||.. +| 
T Consensus      1034 ~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~----------------Vd~~~l~~~~~wL~~~~Q~ 1097 (1642)
T 3prx_B         1034 TGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAG----------------ISHEIICGGVRWLILNRQQ 1097 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccC----------------CCHHHHHHHHHHHHhhccC
Confidence            444556779999999998877667777888887777665542110                123467889999986 67 


Q ss_pred             -CCccccCC--------C----CCCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhc
Q psy6404         158 -RSGFQGRP--------N----KPVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDT  202 (361)
Q Consensus       158 -dGgF~~~~--------~----~~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~sc  202 (361)
                       ||+|....        +    .+.++..|-.++.+|.-.+..       ....++++.+||.+.
T Consensus      1098 ~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B         1098 PDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             CCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence             89996421        1    133444444444443322211       012457888898765

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=95.97  E-value=0.027  Score=54.50  Aligned_cols=96  Identities=13%  Similarity=-0.062  Sum_probs=66.0

Q ss_pred             CCchhHHHHHHHHHHccCCC----CCCh-------hhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhc
Q psy6404           3 TAEEAVLETAVEVLEAVPPG----VLAL-------VYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILD   71 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~----~l~~-------~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~   71 (361)
                      +-++-.+..|+.+|.++ .+    ....       ...++++++|.+.|++||+|+        ++..|-.|+.+|...+
T Consensus       149 ~~sVDT~AMa~LAL~C~-~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG--------n~yST~LA~QAL~~~~  219 (399)
T 2pmv_A          149 PFNVDTGAMATLALTCM-YNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG--------DIYSTGLAMQALSVTP  219 (399)
T ss_dssp             CCCHHHHHHHHHHHHHH-HTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS--------SHHHHHHHHHHHHHCS
T ss_pred             cccchHHHHHHHHHHHH-hhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc--------ccccHHHHHHHHHhcC
Confidence            45677888889999888 43    1111       113567888888899999995        3445556666666655


Q ss_pred             CC--CcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHH
Q psy6404          72 DW--SGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASL  115 (361)
Q Consensus        72 ~~--~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL  115 (361)
                      ..  ...+..++.+||++ |..||+|+       +...|.-.+-+|
T Consensus       220 ~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL  257 (399)
T 2pmv_A          220 EPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSL  257 (399)
T ss_dssp             SCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHH
T ss_pred             CCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHh
Confidence            31  22378999999999 99999997       345666666544

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=95.56  E-value=0.045  Score=52.92  Aligned_cols=92  Identities=16%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R  156 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~  156 (361)
                      .++++++|++.|++||+||       ++.+|--|+++|...+..+..                  ..+..++++||.. .
T Consensus       185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~------------------~W~c~~al~~l~~q~  239 (399)
T 2pmv_A          185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKK------------------EWNCKKTTDMILNEI  239 (399)
T ss_dssp             HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSS------------------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccc------------------cccHHHHHHHHHHHh
Confidence            5678889999999999997       589999999999998863211                  1167788899886 2


Q ss_pred             cCCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCC
Q psy6404         157 QRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGL  209 (361)
Q Consensus       157 QdGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf  209 (361)
                      ++|+|. .|         ..+..+|-.|...+..|+..     ..|+...+-+
T Consensus       240 ~~G~F~-np---------~~taQilPaL~~ktyldv~~-----~~C~~~~~~~  277 (399)
T 2pmv_A          240 KQGKFH-NP---------MSIAQILPSLKGKTYLDVPQ-----VTCSPDHEVQ  277 (399)
T ss_dssp             TTTTTC-SH---------HHHHHHHHHHTTCCGGGGGG-----CCBSCC----
T ss_pred             hCCCcC-CH---------HHHHHHHHHhcCCCccCcCc-----CCCCCCcccc
Confidence            399996 11         23444555554334444332     4687776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	7e-55
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	3e-34
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	7e-05
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	1e-44
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	2e-42
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	4e-05
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	6e-44
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	2e-38

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  181 bits (460), Expect = 7e-55
 Identities = 84/203 (41%), Positives = 117/203 (57%), Gaps = 17/203 (8%)

Query: 24  LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
           L+ V +      LR+      SF       + DMRFV+CA  ICY+L++WSGMD  + + 
Sbjct: 122 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAIS 181

Query: 84  FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
           +I RS+SYD    QG  LESHGGST+C +ASL LM KL+                 +F  
Sbjct: 182 YIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE----------------VFSE 225

Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT- 202
            ++  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L    + + E+    +L T 
Sbjct: 226 KELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ 285

Query: 203 QHMTGGLSKWSDTQADILHTYLG 225
             + GG +KW D+  D LH Y G
Sbjct: 286 DRLVGGFAKWPDSHPDALHAYFG 308

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  127 bits (319), Expect = 3e-34
 Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 23/294 (7%)

Query: 57  MRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLA 116
           +   F A S   +LD    +++   +E+I+                   GS+Y  +    
Sbjct: 31  LTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNP 90

Query: 117 LMNKLDT-------LRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQR--SGFQGRPN- 166
             N           +  T   L   ++          E+    L   Q     F   P  
Sbjct: 91  SKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEG 150

Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--- 223
              D  + +       +LN  + +D ++ +  +  +     GL++ +  ++    T+   
Sbjct: 151 SENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGI 210

Query: 224 -----LGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNS 278
                +G+  +     + ++  +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L  
Sbjct: 211 ASLCLMGK--LEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKI 268

Query: 279 ATWIDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKE 329
             + + E+    +L T   + GG +KW D+  D LH Y  +  +S    + + +
Sbjct: 269 FQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICK 322

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 32/196 (16%)

Query: 175 FWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRII 234
           F+  + L +L++   ++++ ++  +   Q +        D       +YLG  F   +  
Sbjct: 35  FFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNP 94

Query: 235 -----------------------------KTQIESLKRWLIFRQR--SGFQGRPN-KPVD 262
                                        +   E+    L   Q     F   P     D
Sbjct: 95  GTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSEND 154

Query: 263 TCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHA 322
             + +       +LN+ + +D ++ +  +  +     GL++ +  ++    T+    S  
Sbjct: 155 MRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLC 214

Query: 323 SRNKLKERNFQLPLDK 338
              KL+E   +  L++
Sbjct: 215 LMGKLEEVFSEKELNR 230

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  153 bits (389), Expect = 1e-44
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 24/198 (12%)

Query: 31  QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLS 90
           ++   ++S      SF   +  G+ D RF FCA +   +L     ++  + +EF+   ++
Sbjct: 112 KVVAYVQSLQKEDGSFAGDI-WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 170

Query: 91  YDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLK 150
           +DG FG  P  ESH G  YC    LA+ ++L  +                      + L 
Sbjct: 171 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVN--------------------SDLLG 210

Query: 151 RWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTG 207
            WL  RQ    G  GRP K  D CY++W+ ASL I+    WID E+L   +L  Q   TG
Sbjct: 211 WWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETG 270

Query: 208 GLSKWSDTQADILHTYLG 225
           G +       D  HT  G
Sbjct: 271 GFADRPGDMVDPFHTLFG 288

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  148 bits (374), Expect = 2e-42
 Identities = 62/282 (21%), Positives = 108/282 (38%), Gaps = 29/282 (10%)

Query: 57  MRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLA 116
           M  V+   ++  ++     M++   L FI       G        + H   T  A+  L 
Sbjct: 41  MSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILT 100

Query: 117 LMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYT 174
           L + +  +                      + +  ++   Q+    F G     +DT ++
Sbjct: 101 LYDSIHVINV--------------------DKVVAYVQSLQKEDGSFAGDIWGEIDTRFS 140

Query: 175 FWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPR 232
           F   A+L++L     I+ E+ +  VL   +  GG      +++     Y   G   +  +
Sbjct: 141 FCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQ 200

Query: 233 IIKTQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLS 290
           + +   + L  WL  RQ    G  GRP K  D CY++W+ ASL I+    WID E+L   
Sbjct: 201 LHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSF 260

Query: 291 VLDTQ-HMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKE 329
           +L  Q   TGG +       D  HT   +  +S     ++K 
Sbjct: 261 ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKP 302

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 239 ESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH 296
           E +  ++   Q    G            YT      L++ +S   I+ ++++  V   Q 
Sbjct: 63  EEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQK 122

Query: 297 MTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQ 333
             G  +     + D   ++    + A   KL   N +
Sbjct: 123 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVE 159

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (390), Expect = 6e-44
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 37/191 (19%)

Query: 52  DGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCA 111
            G+ D+R  +CA S+  + +  +        E+I R  +++G  G  P +E+HGG T+C 
Sbjct: 176 GGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCG 235

Query: 112 LASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS---GFQGRPNKP 168
           LA+L ++ +  +L                     ++SL +W+  RQ     GFQGR NK 
Sbjct: 236 LAALVILKRERSL--------------------NLKSLLQWVTSRQMRFEGGFQGRCNKL 275

Query: 169 VDTCYTFWIGASLSILNAATW-------------IDEERLLLSVLD-TQHMTGGLSKWSD 214
           VD CY+FW    L +L+ A                 ++ L   +L   Q   GGL     
Sbjct: 276 VDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPG 335

Query: 215 TQADILHTYLG 225
              D  HT   
Sbjct: 336 KSRDFYHTCYC 346

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (352), Expect = 2e-38
 Identities = 60/277 (21%), Positives = 97/277 (35%), Gaps = 38/277 (13%)

Query: 61  FCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNK 120
           +   S+  + +    +      +F+    S +G FG GP    H   TY A+ +L ++  
Sbjct: 86  WILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGT 145

Query: 121 LDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIG 178
            +                        E L ++L   ++    F       VD    +   
Sbjct: 146 EEAYD-----------------IINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAA 188

Query: 179 ASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKT 236
           +  S+ N  T    E     +   Q+  GG+      +A   +T+  L    +  R    
Sbjct: 189 SVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSL 248

Query: 237 QIESLKRWLIFRQRS---GFQGRPNKPVDTCYTFWIGASLSILNSATW------------ 281
            ++SL +W+  RQ     GFQGR NK VD CY+FW    L +L+ A              
Sbjct: 249 NLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW 308

Query: 282 -IDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYL 316
              ++ L   +L   Q   GGL        D  HT  
Sbjct: 309 MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCY 345

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.85
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.81
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.8
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.66
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.13
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.06
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.08
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.03
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	97.98
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	97.84
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	97.74
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	97.69
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	97.55
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	97.49
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	97.46
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	96.86

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.1e-69  Score=514.79  Aligned_cols=301  Identities=21%  Similarity=0.318  Sum_probs=269.4

Q ss_pred             CCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404          22 GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCL  101 (361)
Q Consensus        22 ~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~  101 (361)
                      +.-+.+.+++|++||+++......+.... ...++++.+||++.+|.+|+.....+++++++||++||++||||+++++.
T Consensus         7 ~~~~~l~~~~H~~y~~~~~~~~~~~~~~~-~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~   85 (325)
T d3dssb1           7 DAPDTLLLEKHADYIASYGSKKDDYEYCM-SEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGH   85 (325)
T ss_dssp             TSCCSCCHHHHHHHHHHTTSSSCGGGSGG-GGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTS
T ss_pred             CCchHHHHHHHHHHHHHhcccCCCcccee-hhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcCCCCCC
Confidence            34457889999999999643322332221 13478999999999999999888889999999999999999999999999


Q ss_pred             ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404         102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA  179 (361)
Q Consensus       102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~  179 (361)
                      .+|+.+||+|+.+|.+++..+.                    .+++++++||.++|  ||||.+.++++.|+|+||||++
T Consensus        86 ~~~l~~T~~al~~L~l~~~~~~--------------------~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~  145 (325)
T d3dssb1          86 DPHLLYTLSAVQILTLYDSIHV--------------------INVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVA  145 (325)
T ss_dssp             CBCHHHHHHHHHHHHHTTCGGG--------------------SCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccccc--------------------cCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHH
Confidence            9999999999999998876433                    37899999999988  9999999999999999999999


Q ss_pred             HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404         180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQG  255 (361)
Q Consensus       180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~G  255 (361)
                      ++.+++..+.++.+++++||++|||+||||+..|+.|+|+++||||+++|..  .++..+.+++++||.+||.  |||||
T Consensus       146 ~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~G  225 (325)
T d3dssb1         146 TLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNG  225 (325)
T ss_dssp             HHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred             HHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCC
Confidence            9999998888999999999999999999999999999999999999999853  4566789999999999996  99999


Q ss_pred             CCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhcc-CCCCCcCCCCCCCCChHHHHHHH--HHhcccCCCccccc
Q psy6404         256 RPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEA--MSHASRNKLKERNF  332 (361)
Q Consensus       256 R~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q-~~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~~~~  332 (361)
                      |+||++|+|||||++++|.+|+..+++|.+++++||+.|| .+.|||+|+|++.||+|||||++  +||++++.+.|++|
T Consensus       226 R~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~~~l~~~~p  305 (325)
T d3dssb1         226 RPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSP  305 (325)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCT
T ss_pred             CCCCCCchHHHHHHHHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999886 56999999999999999999975  69999999999999


Q ss_pred             cCCCCcccccc
Q psy6404         333 QLPLDKKDIAP  343 (361)
Q Consensus       333 ~~~~~~~~~~~  343 (361)
                      .++++++..++
T Consensus       306 ~~~i~~~~~~~  316 (325)
T d3dssb1         306 VFCMPEEVLQR  316 (325)
T ss_dssp             TTSSBHHHHHH
T ss_pred             cccCCHHHHHH
Confidence            99987665543

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-69  Score=516.68  Aligned_cols=299  Identities=22%  Similarity=0.358  Sum_probs=262.2

Q ss_pred             hhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCC------------
Q psy6404          27 VYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDG------------   93 (361)
Q Consensus        27 ~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dG------------   93 (361)
                      ..|++|++|++++ +.-+..|...   ..++++.+||+|.+|.+|+.....+++++++||++||.+++            
T Consensus         3 f~~~kH~~y~~~~l~~lp~~~~~~---D~~R~~~~Yw~l~sL~lL~~l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~   79 (346)
T d1n4qb_           3 FLRDRHVRFFQRCLQVLPERYSSL---ETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR   79 (346)
T ss_dssp             CCHHHHHHHHHHHHHEECGGGGGG---GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHH---HhhhHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhccccccccCccccCcc
Confidence            4599999999985 3334555554   24799999999999999998878889999999999995432            


Q ss_pred             --------------CCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--
Q psy6404          94 --------------AFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--  157 (361)
Q Consensus        94 --------------GF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--  157 (361)
                                    +|++.+++.+|+.+||+||++|.+++..                   ++..|++++++||.++|  
T Consensus        80 gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~-------------------~~~idr~~i~~~l~~lq~~  140 (346)
T d1n4qb_          80 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD-------------------LSRVDKEACLAGLRALQLE  140 (346)
T ss_dssp             SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC-------------------STTSCHHHHHHHHHHHBCT
T ss_pred             CcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchH-------------------hhHhHHHHHHHHHHHhcCC
Confidence                          3444556788999999999999999862                   12348899999999988  


Q ss_pred             CCccccC-CCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--cc-
Q psy6404         158 RSGFQGR-PNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RI-  233 (361)
Q Consensus       158 dGgF~~~-~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~-  233 (361)
                      ||||.+. .++|+|+|+||||++++.+|+..+.++++++++||++|||+||||+..|+.|||+++|||||++|..  .+ 
T Consensus       141 DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~  220 (346)
T d1n4qb_         141 DGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLE  220 (346)
T ss_dssp             TSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHH
T ss_pred             CCCccccCCCCcchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccc
Confidence            9999765 4679999999999999999999999999999999999999999999999999999999999999964  22 


Q ss_pred             ---chhhHHHHHHHHHHhhcCCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCC
Q psy6404         234 ---IKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQA  309 (361)
Q Consensus       234 ---~~~~~~~l~~WL~~rQ~gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~  309 (361)
                         ...+++++++||.+||.|||||||||++|+|||||++++|.+|+..+++|.+++++||+.||+ +.|||+|+|++.|
T Consensus       221 ~~~~~~~~~~l~~WL~~Rq~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~p  300 (346)
T d1n4qb_         221 EVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHP  300 (346)
T ss_dssp             HHSCHHHHHHHHHHHHTTBSSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCC
T ss_pred             cccchhhHHHHHHHHHhcccCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCC
Confidence               234789999999999999999999999999999999999999999999999999999998864 6999999999999


Q ss_pred             ChHHHHHHH--HHhcccCCCccccccCCCCcccccchhhH
Q psy6404         310 DILHTYLEA--MSHASRNKLKERNFQLPLDKKDIAPLDEL  347 (361)
Q Consensus       310 D~~hT~~a~--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (361)
                      |+|||||++  +||++++.+.|++|.++++++..+++.++
T Consensus       301 D~~HT~~~l~gLsl~~~~~l~~~~p~~~i~~~~~~~~~~l  340 (346)
T d1n4qb_         301 DALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDL  340 (346)
T ss_dssp             BHHHHHHHHHHHHHTTCTTCCCEETTTTEEHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCCCCcCcCCccCCCHHHHHHHHHH
Confidence            999999975  68899999999999999988877766665

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-70  Score=530.03  Aligned_cols=294  Identities=23%  Similarity=0.263  Sum_probs=258.6

Q ss_pred             ChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCc
Q psy6404          25 ALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLE  102 (361)
Q Consensus        25 ~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~  102 (361)
                      ..+.|++|++|++++ +.-+.+|.+.   ..++++.+||+|.++.+|+. .+...++++++||.+||+++|||+++|++.
T Consensus        51 ~~L~r~~H~~y~~~~L~~lp~~~~~l---D~~r~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~  127 (401)
T d2h6fb1          51 LVLQREKHFHYLKRGLRQLTDAYECL---DASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQY  127 (401)
T ss_dssp             CCCCHHHHHHHHHHHTTEECGGGGGG---TTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCC
T ss_pred             ccccHHHHHHHHHHHHHhCCHHhhcc---ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence            347899999999975 4444566654   35899999999999999995 455678999999999999999999999999


Q ss_pred             cCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHH
Q psy6404         103 SHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGAS  180 (361)
Q Consensus       103 sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~  180 (361)
                      +|+++||+||++|.+++..+.                 ++..+++++++||.++|  ||||.++++++.|+|++|||+++
T Consensus       128 ~hla~Ty~Al~~L~ilg~~~~-----------------~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i  190 (401)
T d2h6fb1         128 PHLAPTYAAVNALCIIGTEEA-----------------YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASV  190 (401)
T ss_dssp             BCHHHHHHHHHHHHHHCCHHH-----------------HTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCCccc-----------------cchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHH
Confidence            999999999999999997322                 13347899999999988  99999999999999999999999


Q ss_pred             HHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCC
Q psy6404         181 LSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQG  255 (361)
Q Consensus       181 L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~G  255 (361)
                      +++|+..+.++.+++++||++||++||||+..|+.|||+++|||||++|..  .....+++++++||++||.   |||||
T Consensus       191 ~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~G  270 (401)
T d2h6fb1         191 ASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQG  270 (401)
T ss_dssp             HHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBS
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCC
Confidence            999999888999999999999999999999999999999999999999863  4566789999999999996   99999


Q ss_pred             CCCCCCcccccchHHHHHHHhhcc-------------CcccHHHHHHHHHh-ccCCCCCcCCCCCCCCChHHHHHHH--H
Q psy6404         256 RPNKPVDTCYTFWIGASLSILNSA-------------TWIDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYLEA--M  319 (361)
Q Consensus       256 R~nK~~D~CYsfW~~a~L~~L~~~-------------~~~~~~~~~~~il~-~Q~~~GGf~~~p~~~~D~~hT~~a~--~  319 (361)
                      |+||++|+|||||++++|.+|+..             .++|.+++++||+. ||++.|||+|+|++.||+|||||++  +
T Consensus       271 R~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gL  350 (401)
T d2h6fb1         271 RCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGL  350 (401)
T ss_dssp             STTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHH
Confidence            999999999999999999999863             24799999999885 6889999999999999999999976  6


Q ss_pred             HhcccC----------------CCccccccCCCCc
Q psy6404         320 SHASRN----------------KLKERNFQLPLDK  338 (361)
Q Consensus       320 sl~~~~----------------~~~~~~~~~~~~~  338 (361)
                      ||++++                .+.|++|.+++..
T Consensus       351 Sl~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~i~~  385 (401)
T d2h6fb1         351 SIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGP  385 (401)
T ss_dssp             HHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCH
T ss_pred             HhcCCcCccCcccccccCCcccccccCCCcccCCH
Confidence            777653                4677777766643

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-46  Score=358.46  Aligned_cols=211  Identities=42%  Similarity=0.788  Sum_probs=197.5

Q ss_pred             CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCL   82 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i   82 (361)
                      .+|++.||+||.+|.+| |++++.+||+++++||+++|++||+|.+...+++.|+|++|+|+.++.+|+..+.++.++++
T Consensus       102 ~~hl~~Ty~Al~~L~~l-g~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~~~~~~  180 (346)
T d1n4qb_         102 SGHIAMTYTGLSCLIIL-GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI  180 (346)
T ss_dssp             CCCHHHHHHHHHHHHHT-TCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHh-chHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCCccccHHHHH
Confidence            57999999999999999 98899999999999999999999999876566789999999999999999988889999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccc
Q psy6404          83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQ  162 (361)
Q Consensus        83 ~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~  162 (361)
                      +||++||++||||+..|+.|+|+++|||||++|.+++..+.+                .+..+++++++||.+||+|||.
T Consensus       181 ~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~----------------~~~~~~~~l~~WL~~Rq~gGf~  244 (346)
T d1n4qb_         181 SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCIMRQQNGYH  244 (346)
T ss_dssp             HHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHH----------------SCHHHHHHHHHHHHTTBSSSBC
T ss_pred             HHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccc----------------cchhhHHHHHHHHHhcccCCcC
Confidence            999999999999999999999999999999999999985432                2345789999999999999999


Q ss_pred             cCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccC-CCCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         163 GRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       163 ~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~-~dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                      |+++|.+|+||+||+.++|.+|+....+|.+++.+||++||+ .+|||+..|+..+|..|||++|++|.
T Consensus       245 GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~~~l~gLs  313 (346)
T d1n4qb_         245 GRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLS  313 (346)
T ss_dssp             SSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCcHHHHHHHHHHHH
Confidence            999999999999999999999998889999999999999966 58999999999999999999999984

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=343.88  Aligned_cols=206  Identities=30%  Similarity=0.461  Sum_probs=190.7

Q ss_pred             CCchhHHHHHHHHHHccCCCC--CChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHH
Q psy6404           3 TAEEAVLETAVEVLEAVPPGV--LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRAR   80 (361)
Q Consensus         3 ~~~~~~t~~al~~L~~L~g~~--l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~   80 (361)
                      .++++.||+||.+|.+| |++  ++.++|+++++||.++|+|||+|... .+++.|++++|||++++.+|+..+.++.++
T Consensus       127 ~~hla~Ty~Al~~L~il-g~~~~~~~idR~~i~~fL~slQ~pDGsF~~~-~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~  204 (401)
T d2h6fb1         127 YPHLAPTYAAVNALCII-GTEEAYDIINREKLLQYLYSLKQPDGSFLMH-VGGEVDVRSAYCAASVASLTNIITPDLFEG  204 (401)
T ss_dssp             CBCHHHHHHHHHHHHHH-CCHHHHTTSCHHHHHHHHHTTBCTTSCBBSS-TTCCBSHHHHHHHHHHHHHTTCCCTTTTTT
T ss_pred             CcchHHHHHHHHHHHHc-CCccccchhhHHHHHHHHHHhcCCCCCcccc-ccCCcccchhHHHHHHHHHhCCCCHHHHHH
Confidence            57999999999999999 764  77899999999999999999999987 467899999999999999999888889999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc---
Q psy6404          81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---  157 (361)
Q Consensus        81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q---  157 (361)
                      +++||++||++||||++.|+.|+|+++|||||++|.+++.++.+                    +++++++||..||   
T Consensus       205 ~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~--------------------d~~~l~~WL~~RQ~~~  264 (401)
T d2h6fb1         205 TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSL--------------------NLKSLLQWVTSRQMRF  264 (401)
T ss_dssp             HHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGS--------------------CHHHHHHHHHHTBCTT
T ss_pred             HHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCccc--------------------CHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999985442                    7889999999999   


Q ss_pred             CCccccCCCCCCCccchhHHHHHHHHhhhhc-------------cccHHHHHHHHHhc-cCCCCCCCCCCCCCCchhhhh
Q psy6404         158 RSGFQGRPNKPVDTCYTFWIGASLSILNAAT-------------WIDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTY  223 (361)
Q Consensus       158 dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~-------------~~~~~~~~~~I~sc-Q~~dGGf~~~p~~~s~~~~T~  223 (361)
                      +|||+|+++|.+|+||+||+.++|.+|+...             .+|.+++.+||+.| |+.+|||+..|+..+|..|||
T Consensus       265 eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~yHT~  344 (401)
T d2h6fb1         265 EGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTC  344 (401)
T ss_dssp             TCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHH
T ss_pred             CCccCCCCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHH
Confidence            7999999999999999999999999998642             36899999999885 888999999999999999999


Q ss_pred             hhhhhcc
Q psy6404         224 LGEFFVR  230 (361)
Q Consensus       224 ~ala~L~  230 (361)
                      ++|++|+
T Consensus       345 y~L~gLS  351 (401)
T d2h6fb1         345 YCLSGLS  351 (401)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999885

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.9e-41  Score=318.45  Aligned_cols=251  Identities=20%  Similarity=0.293  Sum_probs=231.4

Q ss_pred             hhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy6404           6 EAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI   85 (361)
Q Consensus         6 ~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i   85 (361)
                      .+..||+|++|++|  ++++..+|+++++||+++|+++|||++.. +..+++..||+++.+|.+++.++.++++++++||
T Consensus        41 ~~~~yw~l~sL~lL--g~l~~~~~~~~i~~L~s~Q~~dGGf~g~~-~~~~~l~~T~~al~~L~l~~~~~~~dr~~i~~~L  117 (325)
T d3dssb1          41 MSGVYWGLTVMDLM--GQLHRMNKEEILVFIKSCQHECGGVSASI-GHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYV  117 (325)
T ss_dssp             HHHHHHHHHHHHHT--TCGGGSCHHHHHHHHHHTBCTTSCBBSST-TSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcCCCCCcCCCC-CCcccHHHHHHHHHHHHhhccccccCHHHHHHHH
Confidence            57789999999999  57889999999999999999999999874 5578999999999999999888889999999999


Q ss_pred             HhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404          86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG  163 (361)
Q Consensus        86 ~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~  163 (361)
                      +++|++||||...++.+++++.||||++++.+++..+.                    ++++++++||.++|  ||||..
T Consensus       118 ~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~--------------------~~~~~~~~~i~scQn~DGGfg~  177 (325)
T d3dssb1         118 QSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDA--------------------INVEKAIEFVLSCMNFDGGFGC  177 (325)
T ss_dssp             HHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGG--------------------SCHHHHHHHHHTTBCTTSCBCS
T ss_pred             HHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCch--------------------hhHHHHHHHHHHhcCCcCCccc
Confidence            99999999999999999999999999999999997432                    37889999999999  999999


Q ss_pred             CCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHH
Q psy6404         164 RPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESL  241 (361)
Q Consensus       164 ~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l  241 (361)
                      .|+.|+|..+|||++++|.+++..+.++.+++++|+.++|.++|||...|++.+|.-+||+++++|..  .....+.+++
T Consensus       178 ~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l  257 (325)
T d3dssb1         178 RPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKL  257 (325)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHH
T ss_pred             cCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCccccccHHHH
Confidence            99999999999999999999999888999999999999999999999999999999999999999853  3455688999


Q ss_pred             HHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHhhcc
Q psy6404         242 KRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSILNSA  279 (361)
Q Consensus       242 ~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L~~~  279 (361)
                      .+|+...|.   |||..+|+|.+|..++|+.+++|.+++..
T Consensus       258 ~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~~  298 (325)
T d3dssb1         258 RSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE  298 (325)
T ss_dssp             HHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCCC
Confidence            999977653   99999999999999999999999999875

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.85  E-value=2.8e-20  Score=178.00  Aligned_cols=230  Identities=14%  Similarity=-0.042  Sum_probs=154.9

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccC-C------------CCcccccCC-CCCCchhHHHHHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTT-P------------CFSFKCTLA-DGDCDMRFVFCACSICYI   69 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~-~------------dG~f~~~~~-~~~~d~~~ty~al~~l~l   69 (361)
                      +.+++|..++++|..- |..-+.....+.++||.+.|. .            .|+|..... +..++.-.|-.++..|..
T Consensus        31 s~vwdTala~~Al~ea-G~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw~~s~~~~~~p~~d~Ta~~l~aL~~  109 (352)
T d2sqca1          31 SPVWDTGLAVLALRAA-GLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNT  109 (352)
T ss_dssp             CHHHHHHHHHHHHHHT-TCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCccccccCCCCCCccccHHHHHHhhhh
Confidence            3467899999988766 543333346789999999883 2            355553321 223555555555555444


Q ss_pred             hcCCC----cccHHHHHHHHHhcCCCCCCCCCCCC-------------------CccCchhhHHHHHHHHHhcccccccc
Q psy6404          70 LDDWS----GMDRARCLEFIFRSLSYDGAFGQGPC-------------------LESHGGSTYCALASLALMNKLDTLRP  126 (361)
Q Consensus        70 L~~~~----~~~~~~~i~~i~~~q~~dGGF~~~p~-------------------~~sh~~~Ty~Al~sL~llg~~~~~~~  126 (361)
                      +....    ....+++++||+++||+||||+....                   ..+....|..++.+|...+.. ..  
T Consensus       110 ~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~-~~--  186 (352)
T d2sqca1         110 LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD-DA--  186 (352)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC-TT--
T ss_pred             hcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCCc-hh--
Confidence            43221    12366899999999999999975311                   012334577777777666542 11  


Q ss_pred             chhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhcc
Q psy6404         127 TQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQ  203 (361)
Q Consensus       127 ~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ  203 (361)
                                      .+.++++++||.+.|  ||+|.++++ ...+..|+.++.+|..++.. ....++++++||+++|
T Consensus       187 ----------------~~~I~kav~~L~~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q  249 (352)
T d2sqca1         187 ----------------WKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQ  249 (352)
T ss_dssp             ----------------SHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTC
T ss_pred             ----------------hHHHHHHHHHHHhccCCCCCccccCC-CCcchHHHHHHHHHHhcccccchHHHHHHHHHHHhcc
Confidence                            246899999999888  999987654 23344455667777777642 3345789999999999


Q ss_pred             CCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCC
Q psy6404         204 HMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQ  254 (361)
Q Consensus       204 ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~  254 (361)
                      ++||||+..          +...++...|.+|+.+|..  ......+++.++||+++|.  |||.
T Consensus       250 ~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~~~i~ra~~~L~~~Q~~dG~w~  314 (352)
T d2sqca1         250 NPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWD  314 (352)
T ss_dssp             CTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCC
T ss_pred             CCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCCCCCC
Confidence            999999843          2344677889999999853  2334568899999999997  7775

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.4e-19  Score=172.21  Aligned_cols=235  Identities=14%  Similarity=0.042  Sum_probs=162.6

Q ss_pred             CchhHHHHHHHHHHccCCCC-CCh--hhHHHHHHHHHhccCCC--------------CcccccCC-CCCCchhHHHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGV-LAL--VYRLQISTSLRSFTTPC--------------FSFKCTLA-DGDCDMRFVFCACS   65 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~-l~~--~~~~~~~~~L~~~Q~~d--------------G~f~~~~~-~~~~d~~~ty~al~   65 (361)
                      +.+++|..++++|.-- |.. .+.  ...++..+||+..|..+              |+|..... ...+|.-.|-.+|.
T Consensus       100 S~vWDTal~~~AL~~a-g~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~  178 (448)
T d1w6ka1         100 SQIWDTAFAIQALLEA-GGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK  178 (448)
T ss_dssp             CHHHHHHHHHHHHHHT-TGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHh-CCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHH
Confidence            5689999999999776 522 222  23577899999988532              45554321 22356666777776


Q ss_pred             HHHHhcC--------CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHH
Q psy6404          66 ICYILDD--------WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLA  116 (361)
Q Consensus        66 ~l~lL~~--------~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~  116 (361)
                      ++.++..        .......++++||+++||+||||+....                     ..+....|..+|.+|.
T Consensus       179 al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~  258 (448)
T d1w6ka1         179 AVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALK  258 (448)
T ss_dssp             HHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHH
T ss_pred             HHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHH
Confidence            6655431        1223467899999999999999986521                     1234556888999988


Q ss_pred             Hhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc-----
Q psy6404         117 LMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT-----  188 (361)
Q Consensus       117 llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~-----  188 (361)
                      .++.. +..+..++             .+.++++++||.+.|  ||||.++++ ...+..|++++.+|..++...     
T Consensus       259 ~~~~~~p~~r~~~~-------------~~~i~ral~yL~~~Q~~DGsW~g~wg-~~~~ygT~~al~aL~~~G~~~~~~~~  324 (448)
T d1w6ka1         259 YFHKRFPEHRAAEI-------------RETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTA  324 (448)
T ss_dssp             HHHHHCTTSSHHHH-------------HHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBC
T ss_pred             HHhhhCCccccccc-------------hHHHHHHHHHHHccCCCCCcccccCC-CcccHHHHHHHHHHHHhCcCcccccc
Confidence            87752 12111111             235788999999888  999988764 233444556777777776431     


Q ss_pred             cccHHHHHHHHHhccCCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCC
Q psy6404         189 WIDEERLLLSVLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGF  253 (361)
Q Consensus       189 ~~~~~~~~~~I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF  253 (361)
                      ...++++++||+++|+.||||+..          ++..|+...|.+||.+|..  ......+++.++||+++|.  |+|
T Consensus       325 ~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~~G~W  403 (448)
T d1w6ka1         325 CAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDW  403 (448)
T ss_dssp             CHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCC
T ss_pred             cHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCCCCC
Confidence            123689999999999999999863          4566888899999999853  3455678999999999997  554

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.80  E-value=1.9e-18  Score=165.07  Aligned_cols=255  Identities=13%  Similarity=-0.001  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCC-------------CCCC
Q psy6404          29 RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLS-------------YDGA   94 (361)
Q Consensus        29 ~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~-------------~dGG   94 (361)
                      .++.++||++.|++||+|...   ..+.++.|-+++.+|..-+. .+.....++++||+++|.             ..||
T Consensus         8 i~rav~~L~~~q~~dG~w~~~---~~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Gg   84 (352)
T d2sqca1           8 LDRAVEYLLSCQKDEGYWWGP---LISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGG   84 (352)
T ss_dssp             HHHHHHHHHHHCCTTSCCCCC---ECCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCC
T ss_pred             HHHHHHHHHHhcCCCCceeCC---CCCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCc
Confidence            478999999999999999643   12456665555544433332 122457889999999983             2255


Q ss_pred             CCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccC-CC---
Q psy6404          95 FGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGR-PN---  166 (361)
Q Consensus        95 F~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~-~~---  166 (361)
                      |+..  ....++...|-.++.+|..+...++.                .....++++++||.+.|  ||||..- +.   
T Consensus        85 w~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~----------------~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~  148 (352)
T d2sqca1          85 FAFQFDNVYYPDVCDTAVVVWALNTLRLPDER----------------RRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTS  148 (352)
T ss_dssp             BCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHH----------------HHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCC
T ss_pred             cccccCCCCCCccccHHHHHHhhhhhcCCchh----------------hHHHHHHHHHHHHHHhhcCCCCcccccccCcc
Confidence            5432  23345556677777766665432210                01235788999999999  9999631 10   


Q ss_pred             ------------CCCCccchhHHHHHHHHhhhhc----cccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404         167 ------------KPVDTCYTFWIGASLSILNAAT----WIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVR  230 (361)
Q Consensus       167 ------------~~~D~~~ty~a~~~L~ll~~~~----~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~  230 (361)
                                  ...|..++-+...++..+....    ...++++++||+++|++||+|....+ .++...|+.++.+|.
T Consensus       149 ~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~  227 (352)
T d2sqca1         149 DLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALK  227 (352)
T ss_dssp             SGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHH
T ss_pred             chhhccchhhhhhccCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-CCcchHHHHHHHHHH
Confidence                        0113333334444444443321    23478999999999999999966543 345667777777764


Q ss_pred             ---cccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhcc
Q psy6404         231 ---PRIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ  295 (361)
Q Consensus       231 ---~~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q  295 (361)
                         .......++++++||.++|.  |||--.+          ...+++.-+-|++.+|...+.......++-.+||+++|
T Consensus       228 ~~g~~~~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~~~i~ra~~~L~~~Q  307 (352)
T d2sqca1         228 AVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQ  307 (352)
T ss_dssp             HTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHC
T ss_pred             hcccccchHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Confidence               22344578899999999997  8873211          11234444457776665555332111245678999999


Q ss_pred             CCCCCcCC
Q psy6404         296 HMTGGLSK  303 (361)
Q Consensus       296 ~~~GGf~~  303 (361)
                      +++|||..
T Consensus       308 ~~dG~w~~  315 (352)
T d2sqca1         308 RPDGGWDE  315 (352)
T ss_dssp             CTTSCCCC
T ss_pred             CCCCCCCC
Confidence            99999975

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-15  Score=149.59  Aligned_cols=193  Identities=13%  Similarity=0.078  Sum_probs=138.5

Q ss_pred             CchhHHHHHHHHHHcc------CCCCCChhhHHHHHHHHHhccCCCCcccccCCC--------------------CCCch
Q psy6404           4 AEEAVLETAVEVLEAV------PPGVLALVYRLQISTSLRSFTTPCFSFKCTLAD--------------------GDCDM   57 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L------~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~--------------------~~~d~   57 (361)
                      +++-+|..+|.+|.++      .++.++.....+.++||.++|++||||..+...                    ..+.+
T Consensus       168 Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~  247 (448)
T d1w6ka1         168 IVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYV  247 (448)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBH
T ss_pred             CCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcc
Confidence            5778899999998765      122233333557899999999999999854110                    01234


Q ss_pred             hHHHHHHHHHHHhcCCC--------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchh
Q psy6404          58 RFVFCACSICYILDDWS--------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQA  129 (361)
Q Consensus        58 ~~ty~al~~l~lL~~~~--------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~  129 (361)
                      ..|..++..|..++...        ....+++++||.+.|++|||+.+. .+..++..|++++.+|...|......    
T Consensus       248 d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~-wg~~~~ygT~~al~aL~~~G~~~~~~----  322 (448)
T d1w6ka1         248 ECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTYRDG----  322 (448)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCS-SBSSHHHHHHHHHHHHHHTTCCCBTT----
T ss_pred             hHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCccccc-CCCcccHHHHHHHHHHHHhCcCcccc----
Confidence            45566666665544211        123778999999999999998764 44457888999999999988632110    


Q ss_pred             hhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccC----------CCCCCCccchhHHHHHHHHhhhhccccHHHHHH
Q psy6404         130 SLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGR----------PNKPVDTCYTFWIGASLSILNAATWIDEERLLL  197 (361)
Q Consensus       130 ~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~----------~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~  197 (361)
                                 -..+.++++++||+++|  ||||...          +.+.+++..|-||+.+|...+......++++++
T Consensus       323 -----------~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL~~ag~~~~~~v~rgv~  391 (448)
T d1w6ka1         323 -----------TACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVR  391 (448)
T ss_dssp             -----------BCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             -----------cccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence                       01236789999999988  9999643          345677778889999887777655667899999


Q ss_pred             HHHhccCCCCCCCCC
Q psy6404         198 SVLDTQHMTGGLSKW  212 (361)
Q Consensus       198 ~I~scQ~~dGGf~~~  212 (361)
                      ||+++|++||+|-..
T Consensus       392 ~L~~~Q~~~G~W~~~  406 (448)
T d1w6ka1         392 CLLEKQLPNGDWPQE  406 (448)
T ss_dssp             HHHHHCCTTSCCCCC
T ss_pred             HHHHccCCCCCCCCC
Confidence            999999999999754

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.13  E-value=1.3e-10  Score=106.08  Aligned_cols=82  Identities=11%  Similarity=-0.043  Sum_probs=68.5

Q ss_pred             CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHH
Q psy6404           4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCL   82 (361)
Q Consensus         4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i   82 (361)
                      +|+..|...|..|.+| | .++...++++++||.+.|++||||+-.. ++.+++..|..++.+|.+++. ......+++.
T Consensus         2 ~~~~~~a~~i~~~~~~-g-~~~~~~~~~~~~~l~~~Q~~dGgW~~~~-~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~   78 (271)
T d2sqca2           2 SNVTMEAEYVLLCHIL-D-RVDRDRMEKIRRYLLHEQREDGTWALYP-GGPPDLDTTIEAYVALKYIGMSRDEEPMQKAL   78 (271)
T ss_dssp             CCTHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHHHSCTTSCCCSST-TCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHH
T ss_pred             CcccccHHHHHHHHHh-C-CCCHHHHHHHHHHHHHccCCCCCccCCC-CCCCcHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            5788899999999999 5 6788789999999999999999998764 456888888777777888873 2345688999


Q ss_pred             HHHHhc
Q psy6404          83 EFIFRS   88 (361)
Q Consensus        83 ~~i~~~   88 (361)
                      +||.+.
T Consensus        79 ~~i~~~   84 (271)
T d2sqca2          79 RFIQSQ   84 (271)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999987

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.06  E-value=1.8e-09  Score=98.40  Aligned_cols=217  Identities=14%  Similarity=0.158  Sum_probs=134.2

Q ss_pred             chhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhh
Q psy6404          56 DMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDL  135 (361)
Q Consensus        56 d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~  135 (361)
                      |+..+...+..+.+++..+....+++++||++.|++||||+..++..+++..|.-|+.+|.++|...+            
T Consensus         3 ~~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~------------   70 (271)
T d2sqca2           3 NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD------------   70 (271)
T ss_dssp             CTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTT------------
T ss_pred             cccccHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCc------------
Confidence            44556677888899997777789999999999999999999999999999999999999999986322            


Q ss_pred             hhhhcCChHhHHHHHHHHHHhc--C-------------Cc--cccCCCC-----------CCCc-cchhHH---HHHHHH
Q psy6404         136 VKSFLFYSPQIESLKRWLIFRQ--R-------------SG--FQGRPNK-----------PVDT-CYTFWI---GASLSI  183 (361)
Q Consensus       136 v~~~~~~~~~~~~~~~~l~~~Q--d-------------Gg--F~~~~~~-----------~~D~-~~ty~a---~~~L~l  183 (361)
                             ...+.++.+||...+  .             |-  |.+.+.-           ..+. +..+|+   ..-+.+
T Consensus        71 -------~~~~~ra~~~i~~~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~  143 (271)
T d2sqca2          71 -------EEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSI  143 (271)
T ss_dssp             -------SHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHH
T ss_pred             -------hHHHHHHHHHHHHcCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHH
Confidence                   236788899998763  1             11  1111110           0111 112221   111222


Q ss_pred             h-hh--hccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhh-c---cc-ccchhhHHHHHHHHHHhhc--CCC
Q psy6404         184 L-NA--ATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFF-V---RP-RIIKTQIESLKRWLIFRQR--SGF  253 (361)
Q Consensus       184 l-~~--~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~-L---~~-~~~~~~~~~l~~WL~~rQ~--gGF  253 (361)
                      + +.  ....+....+++|..-|.+++.+....+. +....+..++.. +   .. .+.+..++++++||.+||.  ||+
T Consensus       144 l~~~~~~~~~~~~~~l~eL~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgw  222 (271)
T d2sqca2         144 VMSRQPVFPLPERARVPELYETDVPPRRRGAKGGG-GWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSW  222 (271)
T ss_dssp             HHHHCCCCCCCGGGCCGGGGCCSSCCCCCCCTTCC-CHHHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSS
T ss_pred             hhccCccCCCchhhHHHHHhcCCCccccccccccc-cHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCc
Confidence            2 11  12234455678888888888877544322 112212222222 1   11 2345667899999999996  666


Q ss_pred             CCCCCCCCccccc--chHHHHHHHhhccCcccH--HHHHHHHH--hccCCCCCcC
Q psy6404         254 QGRPNKPVDTCYT--FWIGASLSILNSATWIDE--ERLLLSVL--DTQHMTGGLS  302 (361)
Q Consensus       254 ~GR~nK~~D~CYs--fW~~a~L~~L~~~~~~~~--~~~~~~il--~~Q~~~GGf~  302 (361)
                      -+        .++  +|.+-+|..+|..  .+.  .+-.++|.  ..|.++||..
T Consensus       223 G~--------i~p~~~~~l~aL~~~G~~--~~p~v~r~l~~l~~~~~~~~dG~~~  267 (271)
T d2sqca2         223 GG--------IQPPWFYALIALKILDMT--QHPAFIKGWEGLELYGVELDYGGWM  267 (271)
T ss_dssp             TT--------SHHHHHHHHHHHHHTTCT--TSHHHHHHHHGGGGGEEECTTSCEE
T ss_pred             cc--------cCHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHheeEcCCCcee
Confidence            33        222  6777788887742  232  34456664  3678888763

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.08  E-value=1.8e-05  Score=74.71  Aligned_cols=175  Identities=11%  Similarity=-0.035  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHhccCCCCcccccCCC-------------------------------------CCCchhHHHHHHHHHHHh
Q psy6404          28 YRLQISTSLRSFTTPCFSFKCTLAD-------------------------------------GDCDMRFVFCACSICYIL   70 (361)
Q Consensus        28 ~~~~~~~~L~~~Q~~dG~f~~~~~~-------------------------------------~~~d~~~ty~al~~l~lL   70 (361)
                      ...++.+.|...|+++|||+-..+-                                     ...|-..|...+..|..+
T Consensus        82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~  161 (408)
T d1r76a_          82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence            4678999999999999999642100                                     011222355666655544


Q ss_pred             cC---C-----CcccHHHHHHHHHhcCCCCCCCCCCC----CCccCch----hhHHHHHHHHHhcc-cccc---ccchhh
Q psy6404          71 DD---W-----SGMDRARCLEFIFRSLSYDGAFGQGP----CLESHGG----STYCALASLALMNK-LDTL---RPTQAS  130 (361)
Q Consensus        71 ~~---~-----~~~~~~~~i~~i~~~q~~dGGF~~~p----~~~sh~~----~Ty~Al~sL~llg~-~~~~---~~~~~~  130 (361)
                      ..   .     ...-..++++||++.|++||||...-    +...|+.    .+--++..|..+.. ...+   ......
T Consensus       162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~  241 (408)
T d1r76a_         162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRT  241 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred             HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHH
Confidence            31   1     11235679999999999999997652    1222331    11122222222211 1111   000000


Q ss_pred             hhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCc---------------cchhHHHHHHHHhhhhc-----
Q psy6404         131 LYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDT---------------CYTFWIGASLSILNAAT-----  188 (361)
Q Consensus       131 ~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~---------------~~ty~a~~~L~ll~~~~-----  188 (361)
                          .      -..-+++.++||+..|  +||+.+.++...|-               -.+-..+.++..|-.+.     
T Consensus       242 ----r------~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~  311 (408)
T d1r76a_         242 ----R------ALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDA  311 (408)
T ss_dssp             ----H------HHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHH
T ss_pred             ----H------HHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChh
Confidence                0      0134678999999999  89987665432211               11112233333332211     


Q ss_pred             -cccHHHHHHHHHhccCCCCCCCCC
Q psy6404         189 -WIDEERLLLSVLDTQHMTGGLSKW  212 (361)
Q Consensus       189 -~~~~~~~~~~I~scQ~~dGGf~~~  212 (361)
                       ...+++++.|+.++|-.+|++...
T Consensus       312 ~~~aI~~av~Wl~~~~~~~~~~~~~  336 (408)
T d1r76a_         312 VKQAIRGGVAWLNTSVIRDRAWVKS  336 (408)
T ss_dssp             HHHHHHHHHHHHHHSCCCC------
T ss_pred             HHHHHHHHHHHHHhcccCCceeeec
Confidence             123688999999999999998654

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.2e-05  Score=68.63  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCC
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQG   98 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~   98 (361)
                      ++.++-|.+.|++||||+... +++.+++.|-+++.+|..+..   ..+....+.+.|+++.|.++|+|...
T Consensus        55 ~~g~~rl~~~Q~~dGgf~~w~-~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~  125 (326)
T d1hzfa_          55 QKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP  125 (326)
T ss_dssp             HHHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred             HHHHHHHHHhcCCCCCcccCC-CCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhccccccc
Confidence            344566777899999999874 456788999888888887653   34456788899999999999998654

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=6.1e-05  Score=68.65  Aligned_cols=69  Identities=19%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ  157 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q  157 (361)
                      .++.++-|+++|++||||+..++.+++...|-+++..|..+.....                 .....+.+...|+..+|
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~-----------------~~~~~~~~~~~~~l~~q  116 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG-----------------GSPEKLQETSNWLLSQQ  116 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTC-----------------CCHHHHHHHHHHHGGGB
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcc-----------------cchhhHHhHHHHHHHHh
Confidence            5667778899999999999999888888889888888887765322                 12346778888988777


Q ss_pred             --CCcccc
Q psy6404         158 --RSGFQG  163 (361)
Q Consensus       158 --dGgF~~  163 (361)
                        +|+|..
T Consensus       117 ~~~g~~~~  124 (326)
T d1hzfa_         117 QADGSFQD  124 (326)
T ss_dssp             CTTSCBCC
T ss_pred             hhcccccc
Confidence              888864

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.3e-05  Score=72.14  Aligned_cols=94  Identities=16%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             HHHHHHHhhh-hccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhcCC
Q psy6404         177 IGASLSILNA-ATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQRSG  252 (361)
Q Consensus       177 a~~~L~ll~~-~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~gG  252 (361)
                      .+-+++++|. .+....+++++||.++|+.||||+..+++.++...|..|..+|+.   ..+...+.++.+||.++  ||
T Consensus         9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~--GG   86 (279)
T d1w6ka2           9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK--GG   86 (279)
T ss_dssp             HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT--TC
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC--CC
Confidence            4567788874 234446889999999999999999999999999999888888753   33445688999999988  66


Q ss_pred             CCCCCCCCCcccccchHHHHHHHhhccCc
Q psy6404         253 FQGRPNKPVDTCYTFWIGASLSILNSATW  281 (361)
Q Consensus       253 F~GR~nK~~D~CYsfW~~a~L~~L~~~~~  281 (361)
                      ..+-+         .|.=--|+++|...|
T Consensus        87 ~~~~~---------~~~k~~La~~g~~~W  106 (279)
T d1w6ka2          87 AVAIP---------SWGKFWLAVLNVYSW  106 (279)
T ss_dssp             GGGCC---------HHHHHHHHHTTSSCG
T ss_pred             ccccc---------hHHHHHHHHcCcccc
Confidence            65532         466567888887654

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3.5e-05  Score=69.21  Aligned_cols=74  Identities=15%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             HHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCC
Q psy6404          64 CSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY  142 (361)
Q Consensus        64 l~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~  142 (361)
                      +.++++++. ++.+.++++++||.++|++||||+..+++.+++..|.-|..+|.++|...+                   
T Consensus        10 Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~-------------------   70 (279)
T d1w6ka2          10 LITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPD-------------------   70 (279)
T ss_dssp             HHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTT-------------------
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCC-------------------
Confidence            345566674 456778999999999999999999999999999999999999999997322                   


Q ss_pred             hHhHHHHHHHHHHh
Q psy6404         143 SPQIESLKRWLIFR  156 (361)
Q Consensus       143 ~~~~~~~~~~l~~~  156 (361)
                      .....++.+||.+.
T Consensus        71 ~p~m~rAr~wI~~~   84 (279)
T d1w6ka2          71 DPDLVRARNILHKK   84 (279)
T ss_dssp             SHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhC
Confidence            23678888999864

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=97.69  E-value=4e-06  Score=76.78  Aligned_cols=177  Identities=10%  Similarity=0.014  Sum_probs=91.6

Q ss_pred             HHHHHHHhccCCCCcccccCC--------CCC----CchhHHHHHHHHHHHhc---CC--CcccHHHHHHHHHhcCCCCC
Q psy6404          31 QISTSLRSFTTPCFSFKCTLA--------DGD----CDMRFVFCACSICYILD---DW--SGMDRARCLEFIFRSLSYDG   93 (361)
Q Consensus        31 ~~~~~L~~~Q~~dG~f~~~~~--------~~~----~d~~~ty~al~~l~lL~---~~--~~~~~~~~i~~i~~~q~~dG   93 (361)
                      ++.++|.+.|+++|||+-..+        +..    -|-..|...+..|..+.   ..  ...-..++++||+++|++||
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            456788888999999973321        110    13333455554444332   11  12346789999999999999


Q ss_pred             CCCCC-CC---CccCchhh-HHHHHHHHHhccccccccchhhhh-HhhhhhhcC--ChHhHHHHHHHHHHhc--CCcccc
Q psy6404          94 AFGQG-PC---LESHGGST-YCALASLALMNKLDTLRPTQASLY-LDLVKSFLF--YSPQIESLKRWLIFRQ--RSGFQG  163 (361)
Q Consensus        94 GF~~~-p~---~~sh~~~T-y~Al~sL~llg~~~~~~~~~~~~~-l~~v~~~~~--~~~~~~~~~~~l~~~Q--dGgF~~  163 (361)
                      ||++. |.   ...|+..- ..-+.+|.+|.....-    ...| ++.+.....  ....+++.++||+..|  +||+.+
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~----~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t  182 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANK----RAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLT  182 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTT----CTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhcc----ccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCC
Confidence            99886 21   12344321 1122333333220000    0000 000000000  0124578999999999  899876


Q ss_pred             CCCCCCC---c-------------cchhHHHHHHHHhhhhcc----ccHHHHHHHHHhccCCCCCCCC
Q psy6404         164 RPNKPVD---T-------------CYTFWIGASLSILNAATW----IDEERLLLSVLDTQHMTGGLSK  211 (361)
Q Consensus       164 ~~~~~~D---~-------------~~ty~a~~~L~ll~~~~~----~~~~~~~~~I~scQ~~dGGf~~  211 (361)
                      .++...|   .             +..=.+..++.|+.....    ..++.++.|+.+++...+|+..
T Consensus       183 ~Wg~Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~~~  250 (324)
T d1gxma_         183 VWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGYTY  250 (324)
T ss_dssp             CCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEEEE
T ss_pred             hhhhccCcccccccccccccChhhhhhhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhchhcccceee
Confidence            6542111   1             111123333333332111    1357788999999988888754

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=97.55  E-value=0.00036  Score=65.60  Aligned_cols=163  Identities=15%  Similarity=0.106  Sum_probs=89.2

Q ss_pred             cccHHHHHHHHHhcCCCCCCCCCCCC--------------------------------------CccCchhhHHHHHHHH
Q psy6404          75 GMDRARCLEFIFRSLSYDGAFGQGPC--------------------------------------LESHGGSTYCALASLA  116 (361)
Q Consensus        75 ~~~~~~~i~~i~~~q~~dGGF~~~p~--------------------------------------~~sh~~~Ty~Al~sL~  116 (361)
                      ....+++.+.|+..|+++|||...-.                                      ...+-..|..+|..|+
T Consensus        80 s~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La  159 (408)
T d1r76a_          80 SKAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLA  159 (408)
T ss_dssp             SHHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHH
Confidence            34577899999999999999953210                                      0011124778887776


Q ss_pred             Hhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccC-CCCCCC-ccchh---HHHHHHHHhhhh-
Q psy6404         117 LMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGR-PNKPVD-TCYTF---WIGASLSILNAA-  187 (361)
Q Consensus       117 llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~-~~~~~D-~~~ty---~a~~~L~ll~~~-  187 (361)
                      .+-.. ...   +...|          ...+.++++||+..|  ||||... |..... ...||   -.+-++.+|... 
T Consensus       160 ~~~~~~~~~---~~~~y----------~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~  226 (408)
T d1r76a_         160 QVVSQLAPE---EAAPY----------RDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIA  226 (408)
T ss_dssp             HHHHHSCGG---GCHHH----------HHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHH
T ss_pred             HHHHHcCcc---cchhH----------HHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHH
Confidence            65321 110   00111          124678999999888  9998653 221111 11122   223344444321 


Q ss_pred             ---cc-------------ccHHHHHHHHHhccCCCCCC----CCCCCC-------------CC-chhhhhhhhhhccc--
Q psy6404         188 ---TW-------------IDEERLLLSVLDTQHMTGGL----SKWSDT-------------QA-DILHTYLGEFFVRP--  231 (361)
Q Consensus       188 ---~~-------------~~~~~~~~~I~scQ~~dGGf----~~~p~~-------------~s-~~~~T~~ala~L~~--  231 (361)
                         ..             ..++++++||+++|..+||+    +.....             .| .+..|...|..|..  
T Consensus       227 ~~~~~~~~~~~~~r~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~  306 (408)
T d1r76a_         227 AGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIE  306 (408)
T ss_dssp             HTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSS
T ss_pred             HhccccccCCHHHHHHHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCC
Confidence               11             23578999999999999884    322110             01 11223333444432  


Q ss_pred             ccc---hhhHHHHHHHHHHhhc
Q psy6404         232 RII---KTQIESLKRWLIFRQR  250 (361)
Q Consensus       232 ~~~---~~~~~~l~~WL~~rQ~  250 (361)
                      ...   ...+++.+.||.+.|.
T Consensus       307 ~ps~~~~~aI~~av~Wl~~~~~  328 (408)
T d1r76a_         307 APSDAVKQAIRGGVAWLNTSVI  328 (408)
T ss_dssp             SCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CCChhHHHHHHHHHHHHHhccc
Confidence            111   2358899999998776

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00071  Score=60.13  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---Cccc-HHHHHHHHHhcCCCCCCCC
Q psy6404          30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMD-RARCLEFIFRSLSYDGAFG   96 (361)
Q Consensus        30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~-~~~~i~~i~~~q~~dGGF~   96 (361)
                      ++.++-|.+.|++||||+.. .+..++.+.|-+++..|......   .+.. .+....++.+.|+.+|-|-
T Consensus        57 ~~gi~rl~~~Q~~dGgf~~w-~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~  126 (294)
T d1c3da_          57 KKGYTQQLAFRQPSSAFAAF-VKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQ  126 (294)
T ss_dssp             HHHHHHHHTTBCTTSCBCSS-TTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBC
T ss_pred             HHHHHHHHHhcCCCCCcccC-CCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCcc
Confidence            34455577789999999987 45567888888888888776532   1222 3344456667788887764

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0006  Score=60.63  Aligned_cols=44  Identities=11%  Similarity=-0.090  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccc
Q psy6404          78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKL  121 (361)
Q Consensus        78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~  121 (361)
                      .++.++-|.+.|++||||+..++..++...|-+++-.|......
T Consensus        56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~   99 (294)
T d1c3da_          56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNL   99 (294)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHh
Confidence            45677778999999999999988888888888888888776653

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=96.86  E-value=0.00074  Score=61.37  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCC---------C----ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHh
Q psy6404          79 ARCLEFIFRSLSYDGAFGQGPC---------L----ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ  145 (361)
Q Consensus        79 ~~~i~~i~~~q~~dGGF~~~p~---------~----~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~  145 (361)
                      .+..++|++.|+++||+.-.-.         .    ..+-..|..+|..|+.+......     ..|          +..
T Consensus        26 ~~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d-----~~~----------~~A   90 (324)
T d1gxma_          26 ASRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGN-----TKY----------RDA   90 (324)
T ss_dssp             GGGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCC-----HHH----------HHH
T ss_pred             hhhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCC-----hhH----------HHH
Confidence            3467899999999999963310         0    11334577777766655431110     011          235


Q ss_pred             HHHHHHHHHHhc--CCccccC-CCCC-CCccchhH---HHHHHHHhhhh------------c-------cccHHHHHHHH
Q psy6404         146 IESLKRWLIFRQ--RSGFQGR-PNKP-VDTCYTFW---IGASLSILNAA------------T-------WIDEERLLLSV  199 (361)
Q Consensus       146 ~~~~~~~l~~~Q--dGgF~~~-~~~~-~D~~~ty~---a~~~L~ll~~~------------~-------~~~~~~~~~~I  199 (361)
                      +.+.++||+..|  +|||.-. |... -....||-   .+.++.+|...            +       ...++++++||
T Consensus        91 ~~Rgi~~LL~~Q~~nGGWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~l  170 (324)
T d1gxma_          91 VRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYI  170 (324)
T ss_dssp             HHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCCccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHH
Confidence            678999999988  9999643 2221 11222332   33344444321            0       12357899999


Q ss_pred             HhccCCCCCC
Q psy6404         200 LDTQHMTGGL  209 (361)
Q Consensus       200 ~scQ~~dGGf  209 (361)
                      +++|-.+||+
T Consensus       171 L~~Q~~~gg~  180 (324)
T d1gxma_         171 LKAQWKQNGV  180 (324)
T ss_dssp             HHHSCEETTE
T ss_pred             HHhhcccCCC
Confidence            9999998884