Psyllid ID: psy6409
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1832 | 2.2.26 [Sep-21-2011] | |||||||
| Q9BUQ8 | 820 | Probable ATP-dependent RN | yes | N/A | 0.389 | 0.869 | 0.655 | 0.0 | |
| Q5RC67 | 820 | Probable ATP-dependent RN | yes | N/A | 0.389 | 0.869 | 0.653 | 0.0 | |
| Q1DMX8 | 820 | Pre-mRNA-splicing ATP-dep | N/A | N/A | 0.351 | 0.785 | 0.482 | 0.0 | |
| Q5BCU6 | 782 | Pre-mRNA-splicing ATP-dep | yes | N/A | 0.347 | 0.814 | 0.5 | 1e-180 | |
| Q53RK8 | 736 | DEAD-box ATP-dependent RN | yes | N/A | 0.316 | 0.788 | 0.542 | 1e-180 | |
| A1CHL3 | 798 | Pre-mRNA-splicing ATP-dep | N/A | N/A | 0.348 | 0.799 | 0.476 | 1e-179 | |
| A7EGG4 | 816 | Pre-mRNA-splicing ATP-dep | N/A | N/A | 0.349 | 0.784 | 0.470 | 1e-179 | |
| A1CX72 | 796 | Pre-mRNA-splicing ATP-dep | N/A | N/A | 0.343 | 0.790 | 0.481 | 1e-178 | |
| A2QIL2 | 810 | Pre-mRNA-splicing ATP-dep | yes | N/A | 0.348 | 0.787 | 0.474 | 1e-177 | |
| Q4WPE9 | 796 | Pre-mRNA-splicing ATP-dep | yes | N/A | 0.296 | 0.683 | 0.536 | 1e-176 |
| >sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/770 (65%), Positives = 614/770 (79%), Gaps = 57/770 (7%)
Query: 427 DRSKERDGKDR---REGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKG-AAA 482
D+ ++R+ KDR ++G+RR++ + +S S + +D + + + DEE++ G
Sbjct: 80 DKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSK--KDEEDEHGDKKP 137
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
K +PLSLEELLAKKKAEEEA +KPKFL+K ER AEAL++RQ EVEE ++ +EEERKKR++
Sbjct: 138 KAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 543 F------------TKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKER 590
F +E +R + D E +++ EEK DK +E AIKER
Sbjct: 198 FQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEK----DKSKELHAIKER 253
Query: 591 YLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQK 650
YLG +KK+RR R LNDRKFVF+WDASEDTS+DYN +YKERHQVQ GRG IAGID+K QK
Sbjct: 254 YLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQK 313
Query: 651 RDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIF 710
R+QS+FYG+++EKRRT EKEQE+ RL+K++K+E KQ+WDDRHW++K LDEMT+RDWRIF
Sbjct: 314 REQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIF 373
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
REDYSIT KGGK+P+P+R+WK++SLP ILE+I+K GY EPTPIQRQAIPIGLQNRDIIG
Sbjct: 374 REDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIG 433
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830
VAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPYAII+APTRELAQQIEEET KFG
Sbjct: 434 VAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGK 493
Query: 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890
PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLIDVLENRYLVL++CTY+VLDEADR
Sbjct: 494 PLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADR 553
Query: 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAV 949
MIDMGFEPDVQKILE+MPV+N KPDT++AED K+LAN+ S K KYRQTVMFTATMPPAV
Sbjct: 554 MIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAV 613
Query: 950 ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ 1009
ERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +KRKKL+ +L +G P+IIFVNQ
Sbjct: 614 ERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQ 673
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++LK G+KDILVATDVAGRGIDI+DV
Sbjct: 674 KKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDV 733
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAG 1129
SMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK+DS +FY+LKQ +
Sbjct: 734 SMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI---------- 783
Query: 1130 KEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
+ SPVS+CPPEL NHPDAQHKPGT++
Sbjct: 784 ------------------------LESPVSSCPPELANHPDAQHKPGTIL 809
|
Involved in pre-mRNA splicing and its phosphorylated form (by SRPK2) is required for spliceosomal B complex formation. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/770 (65%), Positives = 612/770 (79%), Gaps = 57/770 (7%)
Query: 427 DRSKERDGKDR---REGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKG-AAA 482
D+ ++R+ KDR ++G+RR++ + +S S + +D + + + DEE++ G
Sbjct: 80 DKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSK--KDEEDEHGDKKP 137
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
K +PLSLEELLAKKKAEEEA +KPKFL+K ER AEAL++RQ EVEE ++ +EEERKKR++
Sbjct: 138 KAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQ 197
Query: 543 F------------TKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKER 590
F +E +R + D E +++ EEK DK +E AIKER
Sbjct: 198 FQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREEK----DKSKELHAIKER 253
Query: 591 YLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQK 650
YLG +KK+RR R LNDRKFVF+WDASEDTS+DYN +YKERHQVQ GRG IAGID+K QK
Sbjct: 254 YLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQK 313
Query: 651 RDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIF 710
R+QS+FYG+++EKRRT EKEQE+ R +K++K+E KQ+WDDRHW++K LDEMT+RDWRIF
Sbjct: 314 REQSRFYGDLMEKRRTLEEKEQEEARFRKLRKKEAKQRWDDRHWSQKKLDEMTDRDWRIF 373
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
REDYSIT KGGK+P+P+R+WK++SLP ILE+I+K GY EPTPIQRQAIPIGLQNRDIIG
Sbjct: 374 REDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIG 433
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830
VAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPYAII+APTRELAQQIEEET KFG
Sbjct: 434 VAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGK 493
Query: 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890
PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLIDVLENRYLV ++CTY+VLDEADR
Sbjct: 494 PLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADR 553
Query: 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAV 949
MIDMGFEPDVQKILE+MPV+N KPDT++AED K+LAN+ S K KYRQTVMFTATMPPAV
Sbjct: 554 MIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAV 613
Query: 950 ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ 1009
ERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +KRKKL+ +L +G P+IIFVNQ
Sbjct: 614 ERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQ 673
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++LK G+KDILVATDVAGRGIDI+DV
Sbjct: 674 KKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDV 733
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAG 1129
SMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK+DS +FY+LKQ +
Sbjct: 734 SMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI---------- 783
Query: 1130 KEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
+ SPVS+CPPEL NHPDAQHKPGT++
Sbjct: 784 ------------------------LESPVSSCPPELANHPDAQHKPGTIL 809
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Involved in pre-mRNA splicing and its phosphorylated form (by SRPK2) is required for spliceosomal B complex formation. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis (strain RS) GN=PRP28 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/701 (48%), Positives = 457/701 (65%), Gaps = 57/701 (8%)
Query: 479 GAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRK------- 531
G++ PLS+EELL KKK +EA S+PKFLTK +R AL KR E+E R+
Sbjct: 83 GSSKSTTPLSVEELLRKKKEADEAASRPKFLTKSQREKLALEKRAKEIEHERRIRAASTN 142
Query: 532 --KMEEERKKRQEFTKEASFESKRENFDARLR---------------------RDREKKK 568
M + AS ++ +N + R R + K
Sbjct: 143 GSMMSDSNGGGGNSNGRASPTTRYDNVNGSSRTSIPTAPRALRGEIPTAPAAMRSSQAKN 202
Query: 569 EDPEE-KELNKDKEREGEA-----------IKERYLGL-------VKKKRRVRRLNDRKF 609
DP ++ D GE ++RY+G KKKRR R +RKF
Sbjct: 203 NDPRPGNKVPSDSAATGEKRTAPEDAQALLTRQRYMGADQTSSFSAKKKRR--RTTERKF 260
Query: 610 VFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAE 669
F+W+A EDTS DYN +Y+ R ++ FFGRG +AG +K Y + LE R EA
Sbjct: 261 NFEWNADEDTSPDYNPLYQNRSEMNFFGRGRLAGFSDDVVD-SAAKRYAKALEDRDLEAG 319
Query: 670 KEQEKVRLKKVKKREEKQKWD--DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPV 727
+ + L+ ++R E+ + D HW++K LD+M ERDWRIF+ED++I+ KGG +P+P+
Sbjct: 320 SARAREILEMERRRREEGGRNGLDLHWSQKRLDQMRERDWRIFKEDFNISTKGGSIPNPM 379
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
R+W E+ LP +LEII+K+GY +P+PIQR AIPI LQNRD+IGVA TGSGKT AFLLPLL
Sbjct: 380 RSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLL 439
Query: 788 VWIQSLPKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
V+I LP++ E GPYAII+APTRELAQQIE E KF PLG V +VGG S E
Sbjct: 440 VYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLE 499
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
EQ F LR G EI+IATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+
Sbjct: 500 EQSFSLRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDA 559
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
+PV+N KPDTE+AED + + K +YRQT+M+TATMP AVER+AR YLRRPA V IG
Sbjct: 560 LPVSNEKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIG 619
Query: 967 SVGKPTERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLG 1024
++G+ + +EQ V +S +DKRKK L ++L G + P+I+FVN K+ D +A+ ++++G
Sbjct: 620 NIGEAVDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMG 679
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
Y++ TLHG K QEQRE AL S++ G+ D+LVATD+AGRGID+ DVS+V+N++MA +IE Y
Sbjct: 680 YSSVTLHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESY 739
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
THRIGRTGRAGK G+A++F +D+ + YDLKQM++ S ++
Sbjct: 740 THRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSIS 780
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Coccidioides immitis (strain RS) (taxid: 246410) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp28 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust.
Identities = 340/680 (50%), Positives = 460/680 (67%), Gaps = 43/680 (6%)
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKK----------MEE 535
PLS+EEL+ KK+ + A ++PKF++K ER AL KR EV+ R++ M+
Sbjct: 70 PLSVEELVRKKREADAAAARPKFMSKAERERLALEKRAKEVDAQRRRTNGTPNGVDGMDL 129
Query: 536 ERKKRQEFTKEASFES------KRENFDA---------RLRRDREKKKEDPE-EKELNKD 579
+ R T S N D R R D K D + +K N++
Sbjct: 130 DTPSRGFRTPNGDSRSIPTGPRAMRNGDGPTPTGPAAMRSRNDSGTTKSDKKVDKRFNEE 189
Query: 580 KEREGEA--IKERYLGL-------VKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKER 630
E +A IK+RY+G KKKR+ R DRKF F+W+A EDTS DYN +Y+ R
Sbjct: 190 DEAAAQAALIKQRYMGADQTSNFSAKKKRK--RTTDRKFNFEWNAEEDTSGDYNPLYQHR 247
Query: 631 HQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAE--KEQEKVRLKKVKKREEKQK 688
H+ FFGRG +AG +K Y + LE R EA + +E + +++ ++ E +
Sbjct: 248 HEANFFGRGRLAGFGDDVAD-SVAKKYAKALEDRDREAGSIRAREILEMERRRREESTRN 306
Query: 689 WDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGY 748
D+HW+EK L+ M ERDWRIF+ED++I KGG VP+P+R+W E+ LP +LE+++++GY
Sbjct: 307 QLDKHWSEKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGY 366
Query: 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME-DADQGPY 807
EPTPIQR AIPI +Q+RD+IGVA TGSGKT AFLLPLL +I LP+I E + GPY
Sbjct: 367 KEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPY 426
Query: 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 867
AI++APTRELAQQIE E KF PLG V +VGG S EEQ + LR G EI+IATPGRL+
Sbjct: 427 AIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLV 486
Query: 868 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927
D +E R LVL+QC Y+++DEADRMID+GFE V KIL+ +PVTN KPDTE+AED + +
Sbjct: 487 DCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAEDSSAMSR 546
Query: 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK 987
+ SK +YRQT+M+TATMP AVER+AR YLRRPA V IGS G+ + +EQ V +++ +DK
Sbjct: 547 HLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDK 606
Query: 988 RKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045
RKK L E+L+ G + P+I+FVN K+ D +A+ +++ G+++ TLHG K QEQRE AL S
Sbjct: 607 RKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALAS 666
Query: 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
++ GS D+LVATD+AGRGID+ DVS+VIN++MA SIE YTHRIGRTGRAGK G+A++F
Sbjct: 667 VRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLG 726
Query: 1106 KDDSHLFYDLKQMMISSPVT 1125
+D+ + YDLKQM+I SP++
Sbjct: 727 NEDADVMYDLKQMLIKSPIS 746
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust.
Identities = 325/599 (54%), Positives = 421/599 (70%), Gaps = 19/599 (3%)
Query: 1243 EQDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDR-KFVFDWDASEDTSVDYNSI 1301
E+D EK +++E+E +AIKE+YLG K K+RV + +++ +F FDW+ +EDTS D NS+
Sbjct: 146 EKDRLEKMAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSL 205
Query: 1302 YKERHQVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEA----EKEQEKVRLKKVK 1356
Y+ H+ + +GRG +AGID + QK+ + E ++R +A E + V K+
Sbjct: 206 YQSPHEARLLYGRGFLAGIDRREQKKVAAAHEKETRAEQRRKAGLDDRPEDDAVDKKEAD 265
Query: 1357 KREEKQKWD---DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTE 1413
+ +D DRHWT+KSLDEMTERDWRIFRED++I+ KG KVP P+R W E+ L TE
Sbjct: 266 AAAKYDAFDMRVDRHWTQKSLDEMTERDWRIFREDFNISYKGSKVPRPMRKWSESKLGTE 325
Query: 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 1473
+L +EK GY EP+PIQ +IP+GLQ RD+IG+AETGSGKT AF+LP+L +I LP I+
Sbjct: 326 LLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISE 385
Query: 1474 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 1533
E+ +GPYA++MAPTRELAQQIEEET KF T LGI+ V +VGG S EEQGF++R GCE+
Sbjct: 386 -ENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEV 444
Query: 1534 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 1593
VIATPGRL+D LE RY VLNQC Y+VLDEADRMIDMGFEP V +L+ MP +NLKP+ ED
Sbjct: 445 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 504
Query: 1594 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 1653
E ++K YR T MF+ATMPPAVERLAR YLR P V IG+ GK T+ I Q
Sbjct: 505 EE--------LDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQN 556
Query: 1654 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713
V + E +K +L ++L KP I+F N KK AD AK L+K G+ TLHGGK QEQ
Sbjct: 557 VIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQ 616
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773
RE +L+ + +LVATDVAGRGIDI DV+ VINY+M SI+ YTHRIGRTGRAGK+G
Sbjct: 617 RETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKG 676
Query: 1774 LAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
LA SF T +++ +F+DLKQM+I S S PPEL H ++ KPG+V RR + ++A
Sbjct: 677 LATSFLTLENTDIFFDLKQMLIQSN-SPVPPELARHEASKFKPGSVPDRPPRRNDTVYA 734
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=prp28 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust.
Identities = 331/694 (47%), Positives = 458/694 (65%), Gaps = 56/694 (8%)
Query: 482 AKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQ 541
A PLS+EEL+ KK+ + A +KPKFL++ ER AL KR EV+ R+ E
Sbjct: 74 AAATPLSVEELVRKKREADAAAAKPKFLSRAERERLALEKRAKEVDADRRLKTERTANGA 133
Query: 542 EFTKEAS--FESKRENFDARL-------RRDREKKKEDPEEKELNK-------------- 578
+ + S +R N D R+ R+ E NK
Sbjct: 134 DSSSAQSTPVYPERPNSDKRVIPTGPRAMRNTEAPARSGPAATRNKNYDMTPPAPPKPMS 193
Query: 579 --------DKEREGE---------AIKERYLGLVK-----KKRRVRRLNDRKFVFDWDAS 616
D +R+ E IK+RY+G K K++ +R DRKF F+W+A
Sbjct: 194 FSLTDSKGDSKRQAEEDETVAQVALIKQRYMGEEKTSNFSAKKKRKRTTDRKFNFEWNAE 253
Query: 617 EDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAE--KEQEK 674
EDTS DYN +Y+ RH+ F+GRG +AG +K Y LE R EA + +E
Sbjct: 254 EDTSGDYNPLYQHRHEANFYGRGRLAGFGDDVAD-SLAKKYARALEDRDQEAGSIRAREM 312
Query: 675 VRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEAS 734
+ ++K ++ E + D+HW+EK L+ M ERDWRIF+ED++I+ KGG VP+P+R+W+E+
Sbjct: 313 LEMEKRRREESTRNQLDKHWSEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWEESG 372
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
LP +LE+++++GY EPTPIQR AIPI LQ+RD+IGVA TGSGKT +FLLPLLV+I LP
Sbjct: 373 LPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELP 432
Query: 795 KIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+I E + GPYAI++APTRELAQQIE E KF PLG V +VGG S EEQ + LR
Sbjct: 433 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLR 492
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
G EI+IATPGRL+D +E R LVL+QC YI++DEADRMID+GFE V KIL+ +PVTN K
Sbjct: 493 NGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALPVTNEK 552
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 973
PD+++AE+ + ++ +YRQT+M+TATMP AVER+AR YLRRPA V IGS G+ +
Sbjct: 553 PDSDEAENSAAMRSH-----RYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVD 607
Query: 974 RIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
+EQ V +++ +DKRKK L ++L+ G + P+I+FVN K+ D +A+ ++ +G+++ TLH
Sbjct: 608 TVEQRVELIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTLH 667
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G K Q+QRE AL S++ GS D+LVATD+AGRGID+ DVS+V+N++MA SIE YTHRIGRT
Sbjct: 668 GSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRT 727
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
GRAGK G+A++F +D+ + YDLKQM++ SP++
Sbjct: 728 GRAGKSGVAITFLGNEDADVMYDLKQMLMKSPIS 761
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 629 bits (1622), Expect = e-179, Method: Compositional matrix adjust.
Identities = 333/708 (47%), Positives = 455/708 (64%), Gaps = 68/708 (9%)
Query: 480 AAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEE--- 536
A K PLS+E++L KKK +EA +KPKFL+K R AL KR EVEE R+K E E
Sbjct: 76 GAPKPGPLSIEDILKKKKEADEAAAKPKFLSKAAREKLALEKRAKEVEEQRRKRESEQDN 135
Query: 537 ----------------------RKKRQEFTK-EASF-----ESKRENFDARLRRDREKKK 568
R +Q+ + ++SF + R R D+
Sbjct: 136 RIPVGTVNGNGYGAANGRDGYERSHQQDNARRDSSFVPTGPRAMRNGQQNRPSSDKPNDM 195
Query: 569 EDPE-------------------EKELNKDKEREGEAIKERYLGL--------VKKKRRV 601
E P EK ++ + I+ RY+G KKKRR
Sbjct: 196 EPPPKSAKPATTAAGSSKASVAGEKRPANAEDLQAALIRTRYMGAETNQSTFSAKKKRR- 254
Query: 602 RRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 661
R ++KF F+W+A EDTS DYN IY+ R + +GRG +AG A+ + Y + L
Sbjct: 255 -RTTEKKFNFEWNAEEDTSPDYNPIYQNRAEAGLYGRGRLAGF---AEDEAATLKYAKAL 310
Query: 662 EKRRTEA--EKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIK 719
E+R EA + +E V +++ +K + + D+HW+EK L+ M ERDWRIF+ED++I+ K
Sbjct: 311 EERDIEAGSARAREIVEMERRRKEDAGRNSLDKHWSEKKLEHMRERDWRIFKEDFNISTK 370
Query: 720 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKT 779
GG +P+P+R+W E+ LP +L++I ++GY EP+ +QR AIPI LQ RD+IGVA TGSGKT
Sbjct: 371 GGAIPNPMRSWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKT 430
Query: 780 LAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLV 839
AFLLPLLV+I LP + D GPYAII+APTRELAQQIE E KF TPLG V +
Sbjct: 431 AAFLLPLLVYISELPPLNEFTKND-GPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSI 489
Query: 840 VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 899
VGG S EEQ + LR G EI+IATPGRL+D +E R LVL QC YI++DEADRMID+GFE
Sbjct: 490 VGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEES 549
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
V KIL+ +PV+N KPDT+DAED + + K +YRQT+M+TATMPPAVE++A+ YLRR
Sbjct: 550 VNKILDALPVSNEKPDTDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRR 609
Query: 960 PATVYIGSVGKPTERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLA 1017
PA V IG++G+ E +EQ V ++ +DKRKK L E+L G + P+I+FVN K+ D +A
Sbjct: 610 PAIVTIGNIGEAVETVEQRVEFVAGEDKRKKRLNEILASGEFQPPIIVFVNIKRNCDAVA 669
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
+ ++ +G+ + TLHG K QEQRE AL S++ G+ ++LVATD+AGRGID+ DVS+V+N++M
Sbjct: 670 RDIKHMGFTSVTLHGSKTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNM 729
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
A +IE YTHRIGRTGRAGK G+A++F +D+ YDLKQM++ S ++
Sbjct: 730 ATNIESYTHRIGRTGRAGKSGVAITFLGNEDADTMYDLKQMLMKSSIS 777
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5' splice site duplex to permit an effective competition for the 5' splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5' splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 626 bits (1614), Expect = e-178, Method: Compositional matrix adjust.
Identities = 334/693 (48%), Positives = 462/693 (66%), Gaps = 64/693 (9%)
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE--F 543
PLS+EEL+ KK+ + A +KPKFL+K ER AL KR EVE R+ E +
Sbjct: 78 PLSVEELVRKKREADAAAAKPKFLSKAERERIALEKRAKEVEAGRRFKSEPSTNGTDRSG 137
Query: 544 TKEASFESKRENFD-------ARLRRDREKKKEDPEEKELNKD--------------KER 582
T+ S S+ N D R R+ E + N D +
Sbjct: 138 TQSPSVYSETPNGDERSIPTGPRAMRNSEVPTGPAAMRNKNYDMSPPPPPKPMSFSLTDG 197
Query: 583 EGEA---------------IKERYLGLVK-----KKRRVRRLNDRKFVFDWDASEDTSVD 622
+G++ IK++Y+G K K++ +R DRKF F+W+A EDTS D
Sbjct: 198 KGDSKRQAEEDEAAAQAALIKQKYMGTEKTSSFSAKKKRKRTTDRKFNFEWNAEEDTSGD 257
Query: 623 YNSIYKERHQVQFFGRGNIAGI-----DIKAQKRDQSKFYGEMLEKRRTEAE--KEQEKV 675
YN +Y++RH+ F+GRG +AG D AQK Y LE R EA + +E +
Sbjct: 258 YNPLYQQRHEANFYGRGRLAGFGDDVADTLAQK------YARALEDRDREAGSIRAREIL 311
Query: 676 RLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASL 735
+++ ++ E + D+HW+EK L+ M ERDWRIF+ED++I+ KGG VP+P+R+W+E+ L
Sbjct: 312 EMERRRREESTRNQLDKHWSEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWEESGL 371
Query: 736 PTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK 795
P +LE+++++GY EPTPIQR AIPI LQ+RD+IGVA TGSGKT +FLLPLLV+I LP+
Sbjct: 372 PKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPR 431
Query: 796 IARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
I E + GPYAI++APTRELAQQIE E KF PLG V +VGG S EEQ + LR
Sbjct: 432 IDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRN 491
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
G EI+IATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+ +PVTN KP
Sbjct: 492 GAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKP 551
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974
DTE+AE+ + ++ +YRQT+M+TATMP AVER+AR YLRRPA V IGS G+ +
Sbjct: 552 DTEEAENSAAMRSH-----RYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDT 606
Query: 975 IEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
+EQ V +++ +DKRKK L ++L+ G + P+I+FVN K+ D +A+ ++++G+++ TLHG
Sbjct: 607 VEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHG 666
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
K QEQRE AL S++ GS D+LVATD+AGRGID+ DVS+V+N++MA SIE YTHRIGRTG
Sbjct: 667 SKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTG 726
Query: 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
RAGK G+A++F +D+ + YDLKQM++ SP++
Sbjct: 727 RAGKSGVAITFLGNEDADVMYDLKQMLMKSPIS 759
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 623 bits (1607), Expect = e-177, Method: Compositional matrix adjust.
Identities = 330/695 (47%), Positives = 456/695 (65%), Gaps = 57/695 (8%)
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKK--RQEF 543
PLS+EEL+ KK+ + A +KPKFL+K+ER AL KR EV R+ E +
Sbjct: 81 PLSVEELVRKKREADAAAAKPKFLSKKEREKLALEKRAQEVAATRRLKSEHASNGVDRSA 140
Query: 544 TKEASFESKRENFDAR---------------------LRRDREKKKE-----DPEEKELN 577
T S S+ N DAR +R + K P K ++
Sbjct: 141 THSPSVSSEGPNGDARSIPTGPRAMRNSDAAPTAPAAMRHSQSHNKNYDLAPPPPPKSMS 200
Query: 578 ---------------KDKEREGEAIKERYLGL-----VKKKRRVRRLNDRKFVFDWDASE 617
+ + +K+RY+G K++ +R DRKF F+W+A E
Sbjct: 201 FGLTSGKGDSRFVDEDEAAAQAALVKQRYMGADQTSNFSAKKKRKRTTDRKFNFEWNAEE 260
Query: 618 DTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAE--KEQEKV 675
DTS DYN +Y+ RH+ FFGRG +AG + K Y LE R EA + +E +
Sbjct: 261 DTSGDYNPLYQHRHETNFFGRGRLAGFGDDVAESVAHK-YARALEDRDREAGSIRAREIL 319
Query: 676 RLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASL 735
+++ ++ E + D+HW+EK L+ M ERDWRIF+ED++I+ KGG VP+P+R+W E++L
Sbjct: 320 EMERRRREESTRNQLDKHWSEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWDESNL 379
Query: 736 PTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK 795
P ++E+I ++GY EPTPIQR AIPI +QNRD+IGVA TGSGKT AFLLPLL +I LP+
Sbjct: 380 PKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPR 439
Query: 796 IARME--DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
I E AD GPYAI++APTRELAQQIE E KF PLG V +VGG S EEQ + LR
Sbjct: 440 IDEFEWRKAD-GPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLR 498
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
G EI+IATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+ +PV+N K
Sbjct: 499 DGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 558
Query: 914 PDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 972
PD+EDAE+ + + N + +YRQT+M+TATMP AVER+AR YLRRPA V IGS G+
Sbjct: 559 PDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAV 618
Query: 973 ERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1030
+ +EQ V +++ +DKRKK L ++L+ G + P+I+FVN K+ D +A+ +++ G+++ TL
Sbjct: 619 DTVEQRVEMIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVTL 678
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090
HG K Q+QRE AL S++ G+ D+LVATD+AGRGID+ DVS+V+N++MA SIE YTHRIGR
Sbjct: 679 HGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGR 738
Query: 1091 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
TGRAGK G+A++F +D+ + YDLKQM++ SP++
Sbjct: 739 TGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPIS 773
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=prp28 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/570 (53%), Positives = 417/570 (73%), Gaps = 26/570 (4%)
Query: 1262 IKERYLGLVK-----KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNI 1316
IK++Y+G K K++ +R DRKF F+W+A EDTS DYN +Y++RH+ F+GRG +
Sbjct: 217 IKQKYMGTEKTSSFSAKKKRKRTTDRKFNFEWNAEEDTSGDYNPLYQQRHEANFYGRGRL 276
Query: 1317 AGI-----DIKAQKRDQSKFYGEMLEKRRTEAE--KEQEKVRLKKVKKREEKQKWDDRHW 1369
AG D AQK Y LE R EA + +E + +++ ++ E + D+HW
Sbjct: 277 AGFGDDVADTLAQK------YARALEDRDREAGSIRAREILEMERRRREESTRNQLDKHW 330
Query: 1370 TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPI 1429
+EK L+ M ERDWRIF+ED++I+ KGG VP+P+R+W+E+ LP +LE+++++GY EPTPI
Sbjct: 331 SEKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPI 390
Query: 1430 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME-DADQGPYAIIMAP 1488
QR AIPI LQ+RD+IGVA TGSGKT +FLLPLLV+I LP+I E + GPYAI++AP
Sbjct: 391 QRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAP 450
Query: 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
TRELAQQIE E KF PLG V +VGG S EEQ + LR G EI+IATPGRL+D +E R
Sbjct: 451 TRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERR 510
Query: 1549 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
LVL+QC Y+++DEADRMID+GFE V KIL+ +PVTN KPDTE+AE+ + ++
Sbjct: 511 LLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAENSAAMRSH----- 565
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK-LM 1667
+YRQT+M+TATMP AVER+AR YLRRPA V IGS G+ + +EQ V +++ +DKRKK L
Sbjct: 566 RYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLA 625
Query: 1668 EVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
++L+ G + P+I+FVN K+ D +A+ ++++G+++ TLHG K QEQRE AL S++ GS
Sbjct: 626 DILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQEQREAALASVRNGST 685
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
D+LVATD+AGRGID+ DVS+V+N++MA SIE YTHRIGRTGRAGK G+A++F +D+ +
Sbjct: 686 DVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGKSGVAITFLGNEDADV 745
Query: 1787 FYDLKQMMISSPVSTCPPELLNHPDAQHKP 1816
YDLKQM++ SP+S P EL H AQ KP
Sbjct: 746 MYDLKQMLMKSPISRVPEELRKHEAAQSKP 775
|
ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1832 | ||||||
| 332023103 | 789 | Putative ATP-dependent RNA helicase DDX2 | 0.360 | 0.836 | 0.798 | 0.0 | |
| 383854652 | 784 | PREDICTED: probable ATP-dependent RNA he | 0.358 | 0.838 | 0.796 | 0.0 | |
| 242022378 | 788 | pre-mRNA-splicing ATP-dependent RNA heli | 0.362 | 0.843 | 0.780 | 0.0 | |
| 350424960 | 784 | PREDICTED: probable ATP-dependent RNA he | 0.355 | 0.830 | 0.794 | 0.0 | |
| 190702284 | 796 | ATP-dependent RNA helicase [Glyptapantel | 0.368 | 0.847 | 0.763 | 0.0 | |
| 156545118 | 821 | PREDICTED: probable ATP-dependent RNA he | 0.406 | 0.907 | 0.719 | 0.0 | |
| 380021885 | 788 | PREDICTED: probable ATP-dependent RNA he | 0.354 | 0.824 | 0.791 | 0.0 | |
| 340724474 | 784 | PREDICTED: probable ATP-dependent RNA he | 0.354 | 0.829 | 0.792 | 0.0 | |
| 307181491 | 669 | Probable ATP-dependent RNA helicase DDX2 | 0.358 | 0.980 | 0.784 | 0.0 | |
| 194880138 | 816 | GG21122 [Drosophila erecta] gi|190657560 | 0.387 | 0.870 | 0.691 | 0.0 |
| >gi|332023103|gb|EGI63364.1| Putative ATP-dependent RNA helicase DDX23 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/699 (79%), Positives = 613/699 (87%), Gaps = 39/699 (5%)
Query: 481 AAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKR 540
A KKEPLSLEELLAKKKAEEEAR+KPKFL+KEERAA AL KRQ EVE +RK+ EEERK
Sbjct: 119 APKKEPLSLEELLAKKKAEEEARAKPKFLSKEERAALALEKRQQEVEAIRKQQEEERK-- 176
Query: 541 QEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRR 600
+ SK +D R R RE ++ E+ + +KDKE+E EAIKERYLGL+KKKRR
Sbjct: 177 --LLSHSDNTSKEREWDDRDSRRRESQRSRDEDIK-DKDKEKEVEAIKERYLGLIKKKRR 233
Query: 601 VRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEM 660
VRRLNDRKFVFDWD SEDTSVDYNSIYKERHQVQFFGRGN+AGIDIKAQKRDQSKFYGE+
Sbjct: 234 VRRLNDRKFVFDWDTSEDTSVDYNSIYKERHQVQFFGRGNLAGIDIKAQKRDQSKFYGEL 293
Query: 661 LEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKG 720
LEKRRTEAEKEQEK+RLKKVK++EEKQKWDDRHW+EK+L+EMTERDWRIFREDY+ITIKG
Sbjct: 294 LEKRRTEAEKEQEKMRLKKVKRKEEKQKWDDRHWSEKALNEMTERDWRIFREDYNITIKG 353
Query: 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTL 780
G++PDP+R+WKE+ P EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSGKTL
Sbjct: 354 GRIPDPIRSWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTL 413
Query: 781 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV 840
AFL+PLL+WI SLPKI R+E+ADQGPY+II+APTRELAQQIEEETNKFG PLGIRTV+VV
Sbjct: 414 AFLIPLLLWITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVV 473
Query: 841 GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 900
GGLSREEQGFRLR+GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV
Sbjct: 474 GGLSREEQGFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 533
Query: 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
QKILEYMPVTNLKPD EDAE+E KLLANYN+KKKYRQTVMFTATMPPAVERLAR+YLRRP
Sbjct: 534 QKILEYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRP 593
Query: 961 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 1020
A VYIGSVGKPTER EQIV+I+ E DKRKKLME+L+RGV+ PVIIFVNQKKGADVLA+GL
Sbjct: 594 AVVYIGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGL 653
Query: 1021 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
EKLGYNACTLHGGKGQEQRE AL SLK GSKDILVATDVAGRGIDIKDVSMVINYDMAK+
Sbjct: 654 EKLGYNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKT 713
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTK 1140
IEDYTHRIGRTGRAGK GLA+SFCTKDDSHLFYDLKQ ++
Sbjct: 714 IEDYTHRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTIL-------------------- 753
Query: 1141 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
+SP+STCPPELLNHPDAQHKPGTV+
Sbjct: 754 --------------ASPISTCPPELLNHPDAQHKPGTVV 778
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854652|ref|XP_003702834.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/697 (79%), Positives = 611/697 (87%), Gaps = 40/697 (5%)
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
KKEPLSLEELLAKKKAEEEAR+KPKFLTKE+RAA AL+KRQ EVE MRK+ EE RK
Sbjct: 117 KKEPLSLEELLAKKKAEEEARAKPKFLTKEQRAALALQKRQEEVEAMRKQQEEARKSF-- 174
Query: 543 FTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVR 602
F E + + + + R R + ++E+ + +KDKE+E EAIKERYLGLVKKKRRVR
Sbjct: 175 FHTENTGKDREWDDRDRRREGQRAREEEIK----DKDKEKEVEAIKERYLGLVKKKRRVR 230
Query: 603 RLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 662
RLNDRKFVFDWD SEDTSVDYNSIYKERHQVQFFGRGN+AGIDIKAQKRDQSKFYGE+LE
Sbjct: 231 RLNDRKFVFDWDTSEDTSVDYNSIYKERHQVQFFGRGNLAGIDIKAQKRDQSKFYGELLE 290
Query: 663 KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGK 722
KRRTEAEKEQEK+RLKKVK++EEKQKWDDRHW+EK+L EMTERDWRIFREDY+ITIKGG+
Sbjct: 291 KRRTEAEKEQEKMRLKKVKRKEEKQKWDDRHWSEKALHEMTERDWRIFREDYNITIKGGR 350
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
+PDP+R+WKE+ P EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSGKTLAF
Sbjct: 351 IPDPIRSWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 410
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
L+PLL+WI SLPKI R+E+ADQGPY+II+APTRELAQQIEEETNKFG PLGIRTV+VVGG
Sbjct: 411 LIPLLLWITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGG 470
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
LSREEQGFRLR+GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK
Sbjct: 471 LSREEQGFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 530
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
ILEYMPVTNLKPD EDAE+E KLLANYN+KKKYRQTVMFTATMPPAVERLAR+YLRRPA
Sbjct: 531 ILEYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAV 590
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
VYIGSVGKPTER EQIV+I+ E DKRKKLME+L+RGV+ PVIIFVNQKKGADVLA+GLEK
Sbjct: 591 VYIGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEK 650
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1082
LGYNACTLHGGKGQEQRE AL SLK GSKDILVATDVAGRGIDIKDVSMVINYDMAK+IE
Sbjct: 651 LGYNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIE 710
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDD 1142
DYTHRIGRTGR AGK GLA+SFCTKDD
Sbjct: 711 DYTHRIGRTGR----------------------------------AGKAGLAISFCTKDD 736
Query: 1143 SHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
SHLFYDLKQ +++SP+STCPPELLNHPDAQHKPGTV+
Sbjct: 737 SHLFYDLKQTILASPISTCPPELLNHPDAQHKPGTVV 773
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative [Pediculus humanus corporis] gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/721 (78%), Positives = 622/721 (86%), Gaps = 56/721 (7%)
Query: 481 AAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKR 540
A KKEPLSLEELL+KKKAEE ARSKP FL+K+ERAAEAL++RQ EVE++RKK EEERKKR
Sbjct: 91 AVKKEPLSLEELLSKKKAEEAARSKPVFLSKQERAAEALQRRQEEVEKLRKKQEEERKKR 150
Query: 541 QEFTKEASFESKRENFDAR-----------------LRRDREKKKEDPEEKELN-----K 578
EF+K A S+ + + RR +++ + D K+ + K
Sbjct: 151 IEFSKSAQSNSQNDKSERDRHDDFRRDKDIDRDKDSFRRGKDRSQNDSLSKKADLDESIK 210
Query: 579 DKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGR 638
DKE+E EAIKERYLG+VKKKRRVRRLNDRKFVFDWDA EDTS+DYN +YKERHQVQFFGR
Sbjct: 211 DKEKEAEAIKERYLGIVKKKRRVRRLNDRKFVFDWDAGEDTSLDYNPLYKERHQVQFFGR 270
Query: 639 GNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKS 698
GNIAGIDIKAQKRDQSKFYGE+LEKRRT+AEKEQEKVRLKK++K+EEKQKWDDRHW+EK+
Sbjct: 271 GNIAGIDIKAQKRDQSKFYGELLEKRRTDAEKEQEKVRLKKLRKKEEKQKWDDRHWSEKA 330
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
LDEMTERDWRIFREDY+ITIKGGK+PDP+RNWKEA +P EIL+IIE++GY E TPIQRQA
Sbjct: 331 LDEMTERDWRIFREDYNITIKGGKIPDPIRNWKEAKIPQEILDIIERVGYTEATPIQRQA 390
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
IPIGLQNRDIIGVAETGSGKTLAFL+PL++WIQSLPKI RMEDADQGPYAII+APTRELA
Sbjct: 391 IPIGLQNRDIIGVAETGSGKTLAFLIPLIMWIQSLPKIQRMEDADQGPYAIILAPTRELA 450
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQIEEETNKFG PLGIRTV+VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN
Sbjct: 451 QQIEEETNKFGNPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 510
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 938
QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE+AED+ LLANYNSKKKYRQT
Sbjct: 511 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDDKFLLANYNSKKKYRQT 570
Query: 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 998
VMFTATMPPAVERLAR+YLRRPA VYIGSVGKP ER+EQIV+I+SEQDKR+KL E+L RG
Sbjct: 571 VMFTATMPPAVERLARTYLRRPAVVYIGSVGKPVERVEQIVHIVSEQDKRRKLCELLARG 630
Query: 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058
V+ PVIIFVNQKKGADVLA+GLEKLGYNACTLHGGKGQEQRE AL+SLK G+KDILVATD
Sbjct: 631 VEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGGKGQEQREYALSSLKNGTKDILVATD 690
Query: 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
VAGRGIDIKDVSMVINYDMAK+IEDYTHRIGRTGR
Sbjct: 691 VAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGR------------------------- 725
Query: 1119 MISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTV 1178
AGK G+AVSFCTKDDS LFYDLKQ+++SSP+STCPPELLNHPDAQHKPGTV
Sbjct: 726 ---------AGKHGIAVSFCTKDDSGLFYDLKQLILSSPISTCPPELLNHPDAQHKPGTV 776
Query: 1179 M 1179
+
Sbjct: 777 V 777
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350424960|ref|XP_003493968.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/702 (79%), Positives = 612/702 (87%), Gaps = 51/702 (7%)
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
KKEPLSLEELLAKKKAEEEAR+KPKFLTKEER A AL+KRQ EVE +RK+ E+ RK
Sbjct: 118 KKEPLSLEELLAKKKAEEEARAKPKFLTKEERTALALQKRQEEVEAIRKQQEDIRK---- 173
Query: 543 FTKEASFES----KRENFDAR-LRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKK 597
SF S K + +D R RRD ++ +ED + +KDKE+E EAIKERYLGLVKK
Sbjct: 174 -----SFHSENVGKDKEWDERDRRRDGQRTREDEIK---DKDKEKEVEAIKERYLGLVKK 225
Query: 598 KRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFY 657
KRRVRRLNDRKFVFDWD SEDTSVDYN+IYKERHQVQFFGRGN AGIDIKAQKRDQSKFY
Sbjct: 226 KRRVRRLNDRKFVFDWDTSEDTSVDYNNIYKERHQVQFFGRGNFAGIDIKAQKRDQSKFY 285
Query: 658 GEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSIT 717
GE+LEKRRTEAEKEQEK+RLKKVK++EEKQKWDDRHW+EK+L EMTERDWRIFREDY+IT
Sbjct: 286 GELLEKRRTEAEKEQEKMRLKKVKRKEEKQKWDDRHWSEKALHEMTERDWRIFREDYNIT 345
Query: 718 IKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSG 777
IKGG++PDP+R+WKE+ P EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSG
Sbjct: 346 IKGGRIPDPIRSWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSG 405
Query: 778 KTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV 837
KTLAFL+PLL+WI SLPKI R+E+ADQGPY+II+APTRELAQQIEEETNKFG PLGIRTV
Sbjct: 406 KTLAFLIPLLLWITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTV 465
Query: 838 LVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897
+VVGGLSREEQGFRLR+GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE
Sbjct: 466 VVVGGLSREEQGFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 525
Query: 898 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957
PDVQKILEYMPVTNLKPD EDAE+E KLLANYN+KKKYRQTVMFTATMPPAVERLAR+YL
Sbjct: 526 PDVQKILEYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYL 585
Query: 958 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLA 1017
RRPA VYIGSVGKPTER EQIV+I+ E DKRKKLME+L+RGV+ PVIIFVNQKKGADVLA
Sbjct: 586 RRPAVVYIGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLA 645
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
+GLEKLGYNACTLHGGKGQEQRE AL SLK GSKDILVATDVAGRGIDIKDVSMVINYDM
Sbjct: 646 RGLEKLGYNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDM 705
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSF 1137
AK+IEDYTHRIGRTGR AGK GLA+SF
Sbjct: 706 AKTIEDYTHRIGRTGR----------------------------------AGKAGLAISF 731
Query: 1138 CTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
CTKDDSHLFYDLKQ +++SP+STCPPELLNHPDAQHKPGTV+
Sbjct: 732 CTKDDSHLFYDLKQTILASPISTCPPELLNHPDAQHKPGTVV 773
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|190702284|gb|ACE75181.1| ATP-dependent RNA helicase [Glyptapanteles flavicoxis] | Back alignment and taxonomy information |
|---|
Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/727 (76%), Positives = 615/727 (84%), Gaps = 52/727 (7%)
Query: 465 PTEQMVISDEEEDKGAAA------------KKEPLSLEELLAKKKAEEEARSKPKFLTKE 512
P+ VI DE + A A K+EPLSLEELLAKKKAEEEAR+KPKFLTKE
Sbjct: 99 PSPIFVIDDEPKKDFAEAQDKEDDEEEKKSKREPLSLEELLAKKKAEEEARAKPKFLTKE 158
Query: 513 ERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPE 572
ER A AL+KRQ EVE +RK+ E+RK + S + + R R E
Sbjct: 159 ERTALALKKRQEEVENLRKQQLEDRKNADVGGSKDSRDWDDRDNSRRRDSQRR------E 212
Query: 573 EKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQ 632
E+ +KDKE+E EAIKERYLGL+KKKRRVRRLNDRKFVFDWD SEDTSVDYN+IYKERHQ
Sbjct: 213 EENKDKDKEKEVEAIKERYLGLIKKKRRVRRLNDRKFVFDWDTSEDTSVDYNNIYKERHQ 272
Query: 633 VQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDR 692
VQFFGRGNIAGIDIKAQKRDQSKFYGE+LEKRRTEAEKEQEK+RLKKVK++EEKQKWDDR
Sbjct: 273 VQFFGRGNIAGIDIKAQKRDQSKFYGELLEKRRTEAEKEQEKMRLKKVKRKEEKQKWDDR 332
Query: 693 HWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 752
HW+EK+L+EMTERDWRIFREDY+ITIKGG++PDP+R+WKE+ P EIL+II+K+GY + T
Sbjct: 333 HWSEKALNEMTERDWRIFREDYNITIKGGRIPDPIRSWKESGFPKEILDIIDKVGYKDLT 392
Query: 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812
PIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+PLL+WI SLPKI R+E+ADQGPY+II+A
Sbjct: 393 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLPKIERLEEADQGPYSIILA 452
Query: 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 872
PTRELAQQIEEETNKFG PLGIRTV+VVGGLSREEQGFRLR+GCEIVIATPGRLIDVLEN
Sbjct: 453 PTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMGCEIVIATPGRLIDVLEN 512
Query: 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 932
RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD EDAE+E KLLANYN+K
Sbjct: 513 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDNEDAENEEKLLANYNTK 572
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
KKYRQTVMFTATMPPAVERLAR+YLRRPA VYIGSVGKPTER EQIV+I+ E DKR+KLM
Sbjct: 573 KKYRQTVMFTATMPPAVERLARTYLRRPAMVYIGSVGKPTERTEQIVHIMGEADKRRKLM 632
Query: 993 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
E+L+RGV+ PVIIFVNQKKGADVLA+GLEK+G+NACTLHGGKGQEQRE AL SLKGGSKD
Sbjct: 633 EILHRGVEPPVIIFVNQKKGADVLARGLEKIGFNACTLHGGKGQEQREYALASLKGGSKD 692
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112
ILVATDVAGRGIDIKDVSMVINYDMAK+IEDYTHRIGRTGR
Sbjct: 693 ILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGR------------------- 733
Query: 1113 YDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQ 1172
AGK GLA+SFCTKDDSHLFYDLKQ ++ SP+STCPPELLNHP+AQ
Sbjct: 734 ---------------AGKAGLAISFCTKDDSHLFYDLKQTILGSPISTCPPELLNHPEAQ 778
Query: 1173 HKPGTVM 1179
HKPGTV+
Sbjct: 779 HKPGTVV 785
|
Source: Glyptapanteles flavicoxis Species: Glyptapanteles flavicoxis Genus: Glyptapanteles Family: Braconidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156545118|ref|XP_001602070.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/803 (71%), Positives = 662/803 (82%), Gaps = 58/803 (7%)
Query: 377 RSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKD 436
R RSRE++ DR R+R+ DRSR+ + DR RD+ RD+SR+R
Sbjct: 66 RERSREKEIDRTRDREQDRSRE-KDLDRSRDK-GRDKSRDR------------------- 104
Query: 437 RREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKK 496
R E + + +++ S DK+ + + ++EE AA+KKEPLSLEELLAKK
Sbjct: 105 RDEKDNKNKDDKKHKPSPSADDDKKDNKNQTKKEEDEQEEQAKAASKKEPLSLEELLAKK 164
Query: 497 KAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENF 556
KAEEEAR+KPKFLTK+ERAA AL+KRQ EV MRK+ EE+RK + +S + RE
Sbjct: 165 KAEEEARAKPKFLTKQERAALALQKRQEEVAAMRKQQEEQRKLLPQTEGSSSSSNNREWD 224
Query: 557 DARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDAS 616
D RR+ ++ ++ E +KDKE+E EAIKERYLGL+KKKRRVRRLNDRKFVFDWD +
Sbjct: 225 DRDRRRENQRSRD---EDVKDKDKEKEVEAIKERYLGLIKKKRRVRRLNDRKFVFDWDTT 281
Query: 617 EDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVR 676
EDTSVDYN+IYKERHQVQFFGRGN+AGIDIKAQKRDQSKFYGE+LEKRRTEAEKEQEKVR
Sbjct: 282 EDTSVDYNNIYKERHQVQFFGRGNLAGIDIKAQKRDQSKFYGELLEKRRTEAEKEQEKVR 341
Query: 677 LKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLP 736
LKKVK++EEKQKWDDRHW+EK++DEMTERDWRIFREDY+ITIKGG++PDP+R+WKE+ P
Sbjct: 342 LKKVKRKEEKQKWDDRHWSEKAIDEMTERDWRIFREDYNITIKGGRIPDPIRSWKESGFP 401
Query: 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKI 796
EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+PLL+WI SLPKI
Sbjct: 402 KEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLPKI 461
Query: 797 ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC 856
R ++ DQGP++II+APTRELAQQIEEETNKFG PLGIRTV+VVGGLSREEQGFRLR+GC
Sbjct: 462 ERTDEVDQGPWSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRMGC 521
Query: 857 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDT 916
EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD
Sbjct: 522 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDN 581
Query: 917 EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIE 976
EDAE+E KLLANYNS+KKYRQTVMFTATMP AVERLAR+YLRRPA VYIGS+GKPTER E
Sbjct: 582 EDAENEEKLLANYNSRKKYRQTVMFTATMPAAVERLARTYLRRPAVVYIGSIGKPTERTE 641
Query: 977 QIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036
QIV+I+ E DKR+KLME+L+RGV+ PVIIFVNQKKGADVLA+GLEKLGYNACTLHGGKGQ
Sbjct: 642 QIVHIMGEADKRRKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGGKGQ 701
Query: 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
EQRE AL SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK+IEDYTHRIGRTGRAGK
Sbjct: 702 EQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGK 761
Query: 1097 EGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
G+A+SFCTKDDSHLFYDLKQ ++ +S
Sbjct: 762 AGVAISFCTKDDSHLFYDLKQTIL----------------------------------AS 787
Query: 1157 PVSTCPPELLNHPDAQHKPGTVM 1179
P+STCPPELLNHP+AQHKPGTV+
Sbjct: 788 PISTCPPELLNHPEAQHKPGTVV 810
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021885|ref|XP_003694787.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/695 (79%), Positives = 606/695 (87%), Gaps = 45/695 (6%)
Query: 487 LSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKE 546
LSLEELLAKKKAEEEAR+KPKFLTKEERAA AL+KRQ EVE ++K+ E+ RK
Sbjct: 126 LSLEELLAKKKAEEEARAKPKFLTKEERAALALQKRQEEVEAIKKQQEDIRK-------- 177
Query: 547 ASFESKR--ENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRL 604
SF S+ ++ + R R + E++ +KDKE+E EAIKERYLGLVKKKRRVRRL
Sbjct: 178 -SFHSENAGKDREWDDRDRRRDGQRTREDEIKDKDKEKEVEAIKERYLGLVKKKRRVRRL 236
Query: 605 NDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKR 664
NDRKFVFDWD SEDTSVDYNSIYKERHQVQFFGRGN+AGIDIKAQKRDQSKFYGE+LEKR
Sbjct: 237 NDRKFVFDWDTSEDTSVDYNSIYKERHQVQFFGRGNLAGIDIKAQKRDQSKFYGELLEKR 296
Query: 665 RTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVP 724
RTEAEKEQEK+RLKKVK++EEKQKWDDRHW+EK+L EMTERDWRIFREDY+ITIKGG++P
Sbjct: 297 RTEAEKEQEKMRLKKVKRKEEKQKWDDRHWSEKALHEMTERDWRIFREDYNITIKGGRIP 356
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
DP+R+WKE+ P EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+
Sbjct: 357 DPIRSWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLI 416
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
PLL+WI SLPKI R+E+ADQGPY+II+APTRELAQQIEEETNKFG PLGIRTV+VVGGLS
Sbjct: 417 PLLLWITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLS 476
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
REEQGFRLR+GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL
Sbjct: 477 REEQGFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 536
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
EYMPVTNLKPD EDAE+E KLLANYN+KKKYRQTVMFTATMPPAVERLAR+YLRRPA VY
Sbjct: 537 EYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVY 596
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
IGSVGKPTER EQIV+I+ E DKRKKLME+L+RGV+ PVIIFVNQKKGADVLA+GLEKLG
Sbjct: 597 IGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLG 656
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
YNACTLHGGKGQEQRE AL SLK GSKDILVATDVAGRGIDIKDVSMVINYDMAK+IEDY
Sbjct: 657 YNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDY 716
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSH 1144
THRIGRTGRAGK GLA+SFCTKDDSHLFYDLKQ ++
Sbjct: 717 THRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTIL------------------------ 752
Query: 1145 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
+SP+STCPPELLNHPDAQHKPGTV+
Sbjct: 753 ----------ASPISTCPPELLNHPDAQHKPGTVV 777
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724474|ref|XP_003400607.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 1113 bits (2878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/695 (79%), Positives = 606/695 (87%), Gaps = 45/695 (6%)
Query: 487 LSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKE 546
LSLEELLAKKKAEEEAR+KPKFLTKEERAA AL+KRQ EVE +RK+ E+ RK
Sbjct: 122 LSLEELLAKKKAEEEARAKPKFLTKEERAALALQKRQEEVEAIRKQQEDIRK-------- 173
Query: 547 ASFESKR--ENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRL 604
SF S+ ++ + R R + E++ +KDKE+E EAIKERYLGLVKKKRRVRRL
Sbjct: 174 -SFHSENVGKDREWDERDRRRDGQRTREDEIKDKDKEKEVEAIKERYLGLVKKKRRVRRL 232
Query: 605 NDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKR 664
NDRKFVFDWD SEDTSVDYNSIYKERHQVQFFGRGN+AGIDIKAQKRDQSKFYGE+LEKR
Sbjct: 233 NDRKFVFDWDTSEDTSVDYNSIYKERHQVQFFGRGNLAGIDIKAQKRDQSKFYGELLEKR 292
Query: 665 RTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVP 724
RTEAEKEQEK+RLKKVK++EEKQKWDDRHW+EK+L EMTERDWRIFREDY+ITIKGG++P
Sbjct: 293 RTEAEKEQEKMRLKKVKRKEEKQKWDDRHWSEKALHEMTERDWRIFREDYNITIKGGRIP 352
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
DP+R+WKE+ P EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+
Sbjct: 353 DPIRSWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLI 412
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
PLL+WI SLPKI R+E+ADQGPY+II+APTRELAQQIEEETNKFG PLGIRTV+VVGGLS
Sbjct: 413 PLLLWITSLPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLS 472
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
REEQGFRLR+GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL
Sbjct: 473 REEQGFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 532
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
EYMPVTNLKPD EDAE+E KLLANYN+KKKYRQTVMFTATMPPAVERLAR+YLRRPA VY
Sbjct: 533 EYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVY 592
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
IGSVGKPTER EQIV+I+ E DKRKKLME+L+RGV+ PVIIFVNQKKGADVLA+GLEKLG
Sbjct: 593 IGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLG 652
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
YNACTLHGGKGQEQRE AL SLK GSKDILVATDVAGRGIDIKDVSMVINYDMAK+IEDY
Sbjct: 653 YNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDY 712
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSH 1144
THRIGRTGR AGK GLA+SFCTKDDSH
Sbjct: 713 THRIGRTGR----------------------------------AGKAGLAISFCTKDDSH 738
Query: 1145 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
LFYDLKQ +++SP+STCPPELLNHPDAQHKPGTV+
Sbjct: 739 LFYDLKQTILASPISTCPPELLNHPDAQHKPGTVV 773
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307181491|gb|EFN69083.1| Probable ATP-dependent RNA helicase DDX23 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/697 (78%), Positives = 604/697 (86%), Gaps = 41/697 (5%)
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
KKEPLSLEELLAKKKAEEEAR+KPKFLTKEERAA AL KRQ EVE ++K+ EE+ K
Sbjct: 3 KKEPLSLEELLAKKKAEEEARAKPKFLTKEERAAIALEKRQQEVEAIKKQQEEDFKLFHS 62
Query: 543 FTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVR 602
+ E + +R RE + +KDKE+E EAIKERYLG++KKKRRVR
Sbjct: 63 DSSGKEREWDDRDRRRDGQRLREDDIK-------DKDKEKEVEAIKERYLGIIKKKRRVR 115
Query: 603 RLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 662
RLNDRKFVFDWD SEDTSVDYN+IYKERHQVQFFGRGN+AGIDIKAQKRDQSKFYGE+LE
Sbjct: 116 RLNDRKFVFDWDTSEDTSVDYNNIYKERHQVQFFGRGNLAGIDIKAQKRDQSKFYGELLE 175
Query: 663 KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGK 722
KRRTEAEKEQEK+RLKKVK++EEKQKWDDRHW+EK+L+EMTERDWRIFREDY+ITIKGG+
Sbjct: 176 KRRTEAEKEQEKMRLKKVKRKEEKQKWDDRHWSEKALNEMTERDWRIFREDYNITIKGGR 235
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
+PDP+R+WKE+ P EIL+II+K+GY + TPIQRQAIPIGLQNRDIIGVAETGSGKTLAF
Sbjct: 236 IPDPIRSWKESGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 295
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
L+PLL+WI +LPKI R+++ADQGPY+II+APTRELAQQIEEETNKFG PLGIRTV+VVGG
Sbjct: 296 LIPLLLWITNLPKIERLDEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGG 355
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
LSREEQGFRLR+GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK
Sbjct: 356 LSREEQGFRLRMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 415
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
ILEYMPVTNLKPD EDAE+E KLLANYN+KKKYRQTVMFTATMPPAVERLAR+YLRRPA
Sbjct: 416 ILEYMPVTNLKPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAV 475
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
VYIGSVGKPTER EQIV+I+ E DKRKKLME+L+RGV+ PVIIFVNQKKGADVLAKGLEK
Sbjct: 476 VYIGSVGKPTERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLAKGLEK 535
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1082
GYNACTLHGGKGQEQRE AL SLK GSKDILVATDVAGRGIDIKDVSMVINYDMAK+IE
Sbjct: 536 FGYNACTLHGGKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIE 595
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDD 1142
DYTHRIGRTGRAGK GLA+SFCTKDDSHLFYDLKQ ++
Sbjct: 596 DYTHRIGRTGRAGKAGLAISFCTKDDSHLFYDLKQTIL---------------------- 633
Query: 1143 SHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
+SP+STCPPELLNHPDAQHKPGTV+
Sbjct: 634 ------------ASPISTCPPELLNHPDAQHKPGTVV 658
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta] gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/794 (69%), Positives = 623/794 (78%), Gaps = 84/794 (10%)
Query: 416 EREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEE 475
ER+R R + R+RSKER G G + K++ G P + +++ DEE
Sbjct: 66 ERQR-PRDNVRERSKERVG---------------GGGVEKKAKMDSGDAPPKPLIVDDEE 109
Query: 476 EDKG--AAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKM 533
+ G A KKEPLSLEELL KKK EEEARSKP FLTKE+RA EA+++RQ EVE R
Sbjct: 110 QQDGKEAKLKKEPLSLEELLDKKKREEEARSKPVFLTKEQRALEAIKRRQEEVERQRAAH 169
Query: 534 EEERKKRQEFTK----------------------------EASFESKRENFDARLRRDRE 565
+ R++ +K E R + + R R +
Sbjct: 170 DAAREQMAAASKVSISMGTAMASGAPPPAIMAPPPKPDRRERGGGRDRGDRNDRGERGDD 229
Query: 566 KKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNS 625
K+ ED +KDKE+E EAI+ERYLG++KKKRRVRRLNDRKFVFDWDA EDTS+DYN+
Sbjct: 230 KRAEDL----THKDKEKELEAIRERYLGIIKKKRRVRRLNDRKFVFDWDAGEDTSIDYNN 285
Query: 626 IYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREE 685
+YKERH VQFFGRGN+AGIDIK QKR QSKFYG++LEKRRTEAEKEQEKVRLKK+K++E+
Sbjct: 286 LYKERHHVQFFGRGNVAGIDIKEQKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKED 345
Query: 686 KQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
KQKWDDRHW+EK DEMTERDWRIFREDY++TIKGG++P+P+R+W E+ P EI++II+K
Sbjct: 346 KQKWDDRHWSEKDNDEMTERDWRIFREDYNVTIKGGRIPNPIRSWSESGFPKEIIDIIDK 405
Query: 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805
+GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+PLL WIQSLPKI R+ED DQG
Sbjct: 406 VGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQG 465
Query: 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 865
PYAIIMAPTRELAQQIEEET KFG PLGIRTV+VVGGLSREEQGFRLRLGCEIVIATPGR
Sbjct: 466 PYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGR 525
Query: 866 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 925
LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE+AEDE KL
Sbjct: 526 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKL 585
Query: 926 LANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 985
+ N+ +KKKYRQTVMFTATMPPAVERLAR+YLRRPATVYIGSVGKPTER EQIVY++ E
Sbjct: 586 MENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGEN 645
Query: 986 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045
DKRKKLME+L+R + PVIIFVNQKKGADVLAKGLEKLGYN+CTLHGGKGQEQRE AL +
Sbjct: 646 DKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAA 705
Query: 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
LK G+KDILVATDVAGRGIDIKDVS+VINYDMAK+IEDYTHRIGRTGRAGK G A+SF T
Sbjct: 706 LKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVT 765
Query: 1106 KDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
KDDS LFYDLKQ C +SPVSTCPPEL
Sbjct: 766 KDDSALFYDLKQ--------------------CVS--------------ASPVSTCPPEL 791
Query: 1166 LNHPDAQHKPGTVM 1179
+NHP+AQHKPGTV+
Sbjct: 792 MNHPEAQHKPGTVV 805
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1832 | ||||||
| FB|FBgn0032690 | 822 | CG10333 [Drosophila melanogast | 0.320 | 0.714 | 0.780 | 4e-254 | |
| ZFIN|ZDB-GENE-030131-6215 | 807 | ddx23 "DEAD (Asp-Glu-Ala-Asp) | 0.321 | 0.729 | 0.725 | 2.1e-239 | |
| RGD|1308685 | 819 | Ddx23 "DEAD (Asp-Glu-Ala-Asp) | 0.321 | 0.719 | 0.714 | 1.2e-234 | |
| UNIPROTKB|A6QLB2 | 820 | DDX23 "Uncharacterized protein | 0.321 | 0.718 | 0.714 | 2.4e-234 | |
| UNIPROTKB|E2RTL6 | 820 | DDX23 "Uncharacterized protein | 0.321 | 0.718 | 0.714 | 6.5e-234 | |
| UNIPROTKB|Q9BUQ8 | 820 | DDX23 "Probable ATP-dependent | 0.321 | 0.718 | 0.714 | 6.5e-234 | |
| WB|WBGene00017162 | 730 | ddx-23 [Caenorhabditis elegans | 0.297 | 0.746 | 0.672 | 6.6e-210 | |
| UNIPROTKB|I3LNN1 | 801 | DDX23 "Uncharacterized protein | 0.209 | 0.479 | 0.668 | 6.8e-186 | |
| ASPGD|ASPL0000051195 | 782 | AN1634 [Emericella nidulans (t | 0.296 | 0.695 | 0.549 | 4.8e-158 | |
| TAIR|locus:2057640 | 733 | AT2G33730 [Arabidopsis thalian | 0.313 | 0.783 | 0.510 | 8.7e-159 |
| FB|FBgn0032690 CG10333 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2402 (850.6 bits), Expect = 4.0e-254, Sum P(2) = 4.0e-254
Identities = 460/589 (78%), Positives = 507/589 (86%)
Query: 1245 DPEEKEL-NKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIYK 1303
D ++L +KDKE+E EAI+E FDWDA EDTS+DYN++YK
Sbjct: 235 DKRAEDLTHKDKEKELEAIRERYLGIIKKKRRVRRLNDRKFVFDWDAGEDTSIDYNNLYK 294
Query: 1304 ERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXXX 1363
ERH VQFFGRGN+AGIDIK QKR QSKFYG++LEKRRTEA
Sbjct: 295 ERHHVQFFGRGNVAGIDIKEQKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKEDKQK 354
Query: 1364 WDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGY 1423
WDDRHW+EK DEMTERDWRIFREDY++TIKGG++P+P+R+W E+ P EI++II+K+GY
Sbjct: 355 WDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGY 414
Query: 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483
EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+PLL WIQSLPKI R+ED DQGPYA
Sbjct: 415 KEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYA 474
Query: 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
IIMAPTRELAQQIEEET KFG PLGIRTV+VVGGLSREEQGFRLRLGCEIVIATPGRLID
Sbjct: 475 IIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLID 534
Query: 1544 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603
VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE+AEDE KL+ N
Sbjct: 535 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMEN 594
Query: 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR 1663
+ +KKKYRQTVMFTATMPPAVERLAR+YLRRPATVYIGSVGKPTER EQIVY++ E DKR
Sbjct: 595 FYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKR 654
Query: 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723
KKLME+L+R + PVIIFVNQKKGADVLAKGLEKLGYN+CTLHGGKGQEQRE AL +LK
Sbjct: 655 KKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKS 714
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
G+KDILVATDVAGRGIDIKDVS+VINYDMAK+IEDYTHRIGRTGRAGK G A+SF TKDD
Sbjct: 715 GAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDD 774
Query: 1784 SHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
S LFYDLKQ + +SPVSTCPPEL+NHP+AQHKPGTV V KKRREEKIFA
Sbjct: 775 SALFYDLKQCVSASPVSTCPPELMNHPEAQHKPGTV-VTKKRREEKIFA 822
|
|
| ZFIN|ZDB-GENE-030131-6215 ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2259 (800.3 bits), Expect = 2.1e-239, Sum P(3) = 2.1e-239
Identities = 430/593 (72%), Positives = 492/593 (82%)
Query: 1243 EQDPEEKELN--KDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNS 1300
+ D E +++ KDK +E AIKE F+WDASEDTS+DYN
Sbjct: 216 DDDDERQKIREEKDKGKELVAIKERYLGGMKKRRRTRHLNDRKFVFEWDASEDTSIDYNP 275
Query: 1301 IYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXX 1360
IYKE+HQV +GRG IAGID+K QKRDQS+FYG+++EKRRT
Sbjct: 276 IYKEKHQVHLYGRGFIAGIDLKQQKRDQSRFYGDLMEKRRTNEEKEQEEQRLKKVRKKEA 335
Query: 1361 XXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+RNWKE SLP ILE+IEK
Sbjct: 336 KQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEK 395
Query: 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480
GY +PTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+ED+DQG
Sbjct: 396 CGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQG 455
Query: 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540
PYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGR
Sbjct: 456 PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGR 515
Query: 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 1600
LIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILEY+PVTN KPDT+DAED K+
Sbjct: 516 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAEDPEKM 575
Query: 1601 LANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE 1659
+ N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V ++SE
Sbjct: 576 MQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSE 635
Query: 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719
+KRKKL+EVL G + P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL+
Sbjct: 636 GEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 695
Query: 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779
+LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F
Sbjct: 696 NLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFL 755
Query: 1780 TKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
TK+DS +FYDLKQ ++ SPVSTCPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 756 TKEDSSVFYDLKQAILESPVSTCPPELANHPDAQHKPGTILT-KKRREETIFA 807
|
|
| RGD|1308685 Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 1.2e-234, Sum P(2) = 1.2e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 230 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 289
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 290 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 349
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 350 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 409
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 410 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 469
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 470 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 529
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 530 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 589
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 590 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 649
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 650 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 709
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 710 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 769
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 770 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 819
|
|
| UNIPROTKB|A6QLB2 DDX23 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 2.4e-234, Sum P(2) = 2.4e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 651 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 710
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 771 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 820
|
|
| UNIPROTKB|E2RTL6 DDX23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 651 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 710
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 771 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 820
|
|
| UNIPROTKB|Q9BUQ8 DDX23 "Probable ATP-dependent RNA helicase DDX23" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 651 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 710
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 771 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 820
|
|
| WB|WBGene00017162 ddx-23 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1995 (707.3 bits), Expect = 6.6e-210, Sum P(2) = 6.6e-210
Identities = 367/546 (67%), Positives = 448/546 (82%)
Query: 1286 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXX 1345
FDWDA EDTS DYN +Y+ RH++QFFGRG++AG D+ AQK++++ FY EM+E RRT
Sbjct: 184 FDWDAGEDTSQDYNKLYQSRHEIQFFGRGSVAGTDVNAQKKEKNSFYQEMMENRRTVDEK 243
Query: 1346 XXXXXXXXXXXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNW 1405
DDRHW K L EM++RDWRIFRED++I+IKGG+VP P+RNW
Sbjct: 244 EQEMHRLEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNW 303
Query: 1406 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 1465
+EA P E+ + +++IGY EPTPIQRQAIPIGLQNRD+IGVAETGSGKT AFLLPLLVWI
Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI 363
Query: 1466 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 1525
SLPK+ R E D GPYAIIMAPTRELAQQIEEETNKFG LGI+TV V+GG SRE+QG
Sbjct: 364 TSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGM 423
Query: 1526 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+LR+G E+VIATPGRL+DVLENRYL+LNQCTY++LDEADRM+DMGFEPDVQK+LEYMP T
Sbjct: 424 KLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDT 483
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 1645
N+K DT++ ++E L+ +++++KYRQTVMFTATM A+ERLAR YLRRPA V+IGS GK
Sbjct: 484 NMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGK 543
Query: 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705
PTER+EQ+VY++ E KRKKL+EVL + P+IIFVNQKKGAD+L+KGL KLG+ L
Sbjct: 544 PTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVL 603
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1765
HGGKGQ+QRE AL +LK G+ DILVATDVAGRGID+KDVS+V+NYDMAKSIEDYTHRIGR
Sbjct: 604 HGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGR 663
Query: 1766 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKR 1825
TGRAGK G A++F T DD+ +++DLKQ+++ SPVS+CPPEL NHPDAQ KPG V KKR
Sbjct: 664 TGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELANHPDAQSKPG-VFTSKKR 722
Query: 1826 REEKIF 1831
++E +F
Sbjct: 723 QDETLF 728
|
|
| UNIPROTKB|I3LNN1 DDX23 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1348 (479.6 bits), Expect = 6.8e-186, Sum P(3) = 6.8e-186
Identities = 258/386 (66%), Positives = 303/386 (78%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIR V V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERL 1627
N+ S K KYRQT+ +T PP RL
Sbjct: 591 NFESGKHKYRQTLPCLST-PPIPTRL 615
|
|
| ASPGD|ASPL0000051195 AN1634 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
Identities = 304/553 (54%), Positives = 394/553 (71%)
Query: 1286 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI-DIKAQKRDQSKFYGEMLEKRRTEAX 1344
F+W+A EDTS DYN +Y+ RH+ FFGRG +AG D A +K Y + LE R EA
Sbjct: 228 FEWNAEEDTSGDYNPLYQHRHEANFFGRGRLAGFGDDVADS--VAKKYAKALEDRDREAG 285
Query: 1345 XXXXXXXXXXXXXXXXXXXWD--DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPV 1402
+ D+HW+EK L+ M ERDWRIF+ED++I KGG VP+P+
Sbjct: 286 SIRAREILEMERRRREESTRNQLDKHWSEKKLEHMRERDWRIFKEDFNIATKGGSVPNPM 345
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
R+W E+ LP +LE+++++GY EPTPIQR AIPI +Q+RD+IGVA TGSGKT AFLLPLL
Sbjct: 346 RSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 1463 VWIQSLPKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
+I LP+I E + GPYAI++APTRELAQQIE E KF PLG V +VGG S E
Sbjct: 406 CYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFE 465
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
EQ + LR G EI+IATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+
Sbjct: 466 EQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDA 525
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
+PVTN KPDTE+AED + + + SK +YRQT+M+TATMP AVER+AR YLRRPA V IG
Sbjct: 526 LPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIG 585
Query: 1642 SVGKPTERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLG 1699
S G+ + +EQ V +++ +DKRKK L E+L+ G + P+I+FVN K+ D +A+ +++ G
Sbjct: 586 SAGEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWG 645
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
+++ TLHG K QEQRE AL S++ GS D+LVATD+AGRGID+ DVS+VIN++MA SIE Y
Sbjct: 646 FSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESY 705
Query: 1760 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTV 1819
THRIGRTGRAGK G+A++F +D+ + YDLKQM+I SP+S P EL H AQ KP T
Sbjct: 706 THRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSKP-TR 764
Query: 1820 MVPKKRREEKIFA 1832
KK E FA
Sbjct: 765 GAGKKIEEASGFA 777
|
|
| TAIR|locus:2057640 AT2G33730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1492 (530.3 bits), Expect = 8.7e-159, Sum P(3) = 8.7e-159
Identities = 303/593 (51%), Positives = 393/593 (66%)
Query: 1248 EKELNKDKEREGEAIKEXXXXXXXXXXXXXX-XXXXXXXFDWDASEDTSVDYNSIYKERH 1306
EK + ++KE+E +AIKE FDW+ +EDTS D N +Y+ H
Sbjct: 149 EKLVEREKEKELDAIKEQYLGGKKPKKRVIRPSEKFRFSFDWENTEDTSRDMNVLYQNPH 208
Query: 1307 QVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEK-RRTEAXXXXXXXXXXXXXXXXXXXXW 1364
+ Q FGRG AG+D + QK+ +K EM ++ R+ + +
Sbjct: 209 EAQLLFGRGFRAGMDRREQKKQAAKHEKEMRDEIRKKDGIVEKPEEAAAQRVREEAADTY 268
Query: 1365 D------DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEII 1418
D DRHW++K L+EMTERDWRIFRED++I+ KG ++P P+R+W+E+ L +E+L+ +
Sbjct: 269 DSFDMRVDRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAV 328
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478
E+ GY +P+PIQ AIP+GLQ RD+IG+AETGSGKT AF+LP+L +I LP ++ E+
Sbjct: 329 ERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSE-ENET 387
Query: 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 1538
+GPYA++MAPTRELAQQIEEET KF LG R +VGG S EEQG ++ GCEIVIATP
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATP 447
Query: 1539 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 1598
GRLID LE RY VLNQC Y+VLDEADRMIDMGFEP V +L+ MP +NLKP+ E+ E
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE--- 504
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 1658
+ KK YR T MF+ATMPP VERLAR YLR P V IG+ GK T+ I Q V ++
Sbjct: 505 -----LDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMK 559
Query: 1659 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718
E +K +L ++L+ +K I+FVN KK D +AK L+K GY TLHGGK QEQRE++L
Sbjct: 560 ESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISL 619
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778
+ ++LVATDV GRGIDI DV+ VINYDM K IE YTHRIGRTGRAGK G+A SF
Sbjct: 620 EGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSF 679
Query: 1779 CTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIF 1831
T D+ +FYDLKQM++ S S PPEL H ++ KPGTV R + ++
Sbjct: 680 LTLHDTEVFYDLKQMLVQSN-SAVPPELARHEASRFKPGTVPDRPPRHSDTVY 731
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P93008 | RH21_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.5421 | 0.3067 | 0.7667 | yes | N/A |
| Q5RC67 | DDX23_PONAB | 3, ., 6, ., 4, ., 1, 3 | 0.6532 | 0.3891 | 0.8695 | yes | N/A |
| Q4WPE9 | PRP28_ASPFU | 3, ., 6, ., 4, ., 1, 3 | 0.5368 | 0.2969 | 0.6834 | yes | N/A |
| Q53RK8 | RH21_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.5425 | 0.3165 | 0.7880 | yes | N/A |
| Q9BUQ8 | DDX23_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.6558 | 0.3891 | 0.8695 | yes | N/A |
| Q4I7F9 | PRP28_GIBZE | 3, ., 6, ., 4, ., 1, 3 | 0.5077 | 0.3018 | 0.7669 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.737 |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1832 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-117 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-117 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-117 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-116 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 6e-89 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-88 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 5e-86 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 1e-84 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-80 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-80 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-79 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-78 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-78 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 8e-74 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 2e-71 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-71 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 7e-71 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-70 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 2e-70 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 3e-69 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 3e-69 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 3e-67 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 3e-67 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 3e-67 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 3e-67 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 1e-60 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 1e-60 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-54 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-54 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-53 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-51 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-49 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-49 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 4e-48 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 3e-45 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 8e-45 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-44 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 7e-40 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-37 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-36 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-36 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-36 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-36 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-36 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 9e-34 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-31 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 5e-30 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-27 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-27 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 2e-27 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 3e-21 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 3e-21 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-16 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-16 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 4e-16 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 1e-15 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 5e-15 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 5e-15 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 8e-13 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 2e-11 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 1e-10 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 1e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-10 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-10 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 1e-09 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 1e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-09 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 8e-09 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 1e-08 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-08 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-08 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 4e-08 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 4e-08 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-08 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-08 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 7e-08 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 8e-08 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 2e-07 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 2e-07 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 2e-07 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 2e-07 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 2e-07 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 3e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 5e-07 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 6e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 6e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 1e-06 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 1e-06 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 1e-06 | |
| COG1110 | 1187 | COG1110, COG1110, Reverse gyrase [DNA replication, | 1e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-06 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 2e-06 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-06 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-06 | |
| COG1110 | 1187 | COG1110, COG1110, Reverse gyrase [DNA replication, | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 4e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-06 | |
| TIGR01622 | 457 | TIGR01622, SF-CC1, splicing factor, CC1-like famil | 5e-06 | |
| PRK09401 | 1176 | PRK09401, PRK09401, reverse gyrase; Reviewed | 6e-06 | |
| PRK09401 | 1176 | PRK09401, PRK09401, reverse gyrase; Reviewed | 6e-06 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 7e-06 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 1e-05 | |
| PLN03137 | 1195 | PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 | 1e-05 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| PLN03137 | 1195 | PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-05 | |
| TIGR01054 | 1171 | TIGR01054, rgy, reverse gyrase | 3e-05 | |
| TIGR01054 | 1171 | TIGR01054, rgy, reverse gyrase | 3e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 5e-05 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 6e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-05 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 8e-05 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 1e-04 | |
| pfam02029 | 431 | pfam02029, Caldesmon, Caldesmon | 1e-04 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-04 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-04 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-04 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-04 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-04 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-04 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-04 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 3e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-04 | |
| pfam12871 | 97 | pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 3 | 5e-04 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 6e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 6e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 6e-04 | |
| pfam08648 | 158 | pfam08648, DUF1777, Protein of unknown function (D | 8e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| pfam11671 | 146 | pfam11671, Apis_Csd, Complementary sex determiner | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.001 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.002 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 0.002 | |
| PRK10917 | 681 | PRK10917, PRK10917, ATP-dependent DNA helicase Rec | 0.002 | |
| PRK10917 | 681 | PRK10917, PRK10917, ATP-dependent DNA helicase Rec | 0.002 | |
| PRK10917 | 681 | PRK10917, PRK10917, ATP-dependent DNA helicase Rec | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 381 bits (980), Expect = e-117
Identities = 163/410 (39%), Positives = 237/410 (57%), Gaps = 37/410 (9%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ L E+L+ ++ +G+ EPTPIQ AIP+ L RD++G A+TG
Sbjct: 17 NVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTG 76
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GI 834
+GKT AFLLPLL KI + + A+I+APTRELA QI EE K G L G+
Sbjct: 77 TGKTAAFLLPLLQ------KILKSVERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGL 129
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R +V GG+S +Q L+ G +IV+ATPGRL+D+++ L L+ +VLDEADRM+DM
Sbjct: 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM 189
Query: 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
GF D++KIL+ +P RQT++F+ATMP + LAR
Sbjct: 190 GFIDDIEKILKALP-------------------------PDRQTLLFSATMPDDIRELAR 224
Query: 955 SYLRRPATVYIGS--VGKPTERIEQIVY-ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKK 1011
YL P + + + + ++I+Q + SE++K + L+++L + VI+FV K+
Sbjct: 225 RYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKR 284
Query: 1012 GADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1071
+ LA+ L K G+ LHG QE+R+ AL K G +LVATDVA RG+DI DVS
Sbjct: 285 LVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344
Query: 1072 VINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMI 1120
VINYD+ EDY HRIGRTGRAG++G+A+SF T++ + +++ +
Sbjct: 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLE 394
|
Length = 513 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 381 bits (980), Expect = e-117
Identities = 163/410 (39%), Positives = 237/410 (57%), Gaps = 37/410 (9%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ L E+L+ ++ +G+ EPTPIQ AIP+ L RD++G A+TG
Sbjct: 17 NVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTG 76
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GI 1509
+GKT AFLLPLL KI + + A+I+APTRELA QI EE K G L G+
Sbjct: 77 TGKTAAFLLPLLQ------KILKSVERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGL 129
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R +V GG+S +Q L+ G +IV+ATPGRL+D+++ L L+ +VLDEADRM+DM
Sbjct: 130 RVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM 189
Query: 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
GF D++KIL+ +P RQT++F+ATMP + LAR
Sbjct: 190 GFIDDIEKILKALP-------------------------PDRQTLLFSATMPDDIRELAR 224
Query: 1630 SYLRRPATVYIGS--VGKPTERIEQIVY-ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKK 1686
YL P + + + + ++I+Q + SE++K + L+++L + VI+FV K+
Sbjct: 225 RYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKR 284
Query: 1687 GADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746
+ LA+ L K G+ LHG QE+R+ AL K G +LVATDVA RG+DI DVS
Sbjct: 285 LVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344
Query: 1747 VINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMI 1795
VINYD+ EDY HRIGRTGRAG++G+A+SF T++ + +++ +
Sbjct: 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLE 394
|
Length = 513 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 382 bits (982), Expect = e-117
Identities = 196/437 (44%), Positives = 266/437 (60%), Gaps = 39/437 (8%)
Query: 1377 MTERDWRIFREDYSITIKGGK-VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 1435
++ ++ R++ ITI G+ VP PV +++ S P IL+ ++ G+ EPTPIQ Q P
Sbjct: 103 LSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWP 162
Query: 1436 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495
I L RD+IG+AETGSGKTLAFLLP +V I + P + R D GP +++APTRELA+Q
Sbjct: 163 IALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-RYGD---GPIVLVLAPTRELAEQ 218
Query: 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555
I E+ NKFG IR + GG+ + Q + LR G EI+IA PGRLID LE+ L +
Sbjct: 219 IREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRV 278
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 1615
TY+VLDEADRM+DMGFEP ++KI V+ ++PD RQT+M
Sbjct: 279 TYLVLDEADRMLDMGFEPQIRKI-----VSQIRPD--------------------RQTLM 313
Query: 1616 FTATMPPAVERLARSYLRR-PATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEVLNRG 1673
++AT P V+ LAR + P V +GS+ I+Q V+++ E +KR KL +L R
Sbjct: 314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRI 373
Query: 1674 VKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
++ ++IFV KKGAD L K L G+ A +HG K QE+R LN K G I++A
Sbjct: 374 MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIA 433
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
TDVA RG+D+KDV VIN+D IEDY HRIGRTGRAG +G + +F T D L DL
Sbjct: 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLV 493
Query: 1792 QMMISS--PVSTCPPEL 1806
+++ + PV PPEL
Sbjct: 494 KVLREAKQPV---PPEL 507
|
Length = 545 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 379 bits (975), Expect = e-116
Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 34/423 (8%)
Query: 702 MTERDWRIFREDYSITIKGGK-VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 760
++ ++ R++ ITI G+ VP PV +++ S P IL+ ++ G+ EPTPIQ Q P
Sbjct: 103 LSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWP 162
Query: 761 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
I L RD+IG+AETGSGKTLAFLLP +V I + P + R D GP +++APTRELA+Q
Sbjct: 163 IALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-RYGD---GPIVLVLAPTRELAEQ 218
Query: 821 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880
I E+ NKFG IR + GG+ + Q + LR G EI+IA PGRLID LE+ L +
Sbjct: 219 IREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRV 278
Query: 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940
TY+VLDEADRM+DMGFEP ++KI V+ ++PD RQT+M
Sbjct: 279 TYLVLDEADRMLDMGFEPQIRKI-----VSQIRPD--------------------RQTLM 313
Query: 941 FTATMPPAVERLARSYLRR-PATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEVLNRG 998
++AT P V+ LAR + P V +GS+ I+Q V+++ E +KR KL +L R
Sbjct: 314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRI 373
Query: 999 VKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
++ ++IFV KKGAD L K L G+ A +HG K QE+R LN K G I++A
Sbjct: 374 MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIA 433
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116
TDVA RG+D+KDV VIN+D IEDY HRIGRTGRAG +G + +F T D L DL
Sbjct: 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLV 493
Query: 1117 QMM 1119
+++
Sbjct: 494 KVL 496
|
Length = 545 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (764), Expect = 6e-89
Identities = 139/414 (33%), Positives = 206/414 (49%), Gaps = 46/414 (11%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
LP +L + ++GY E TPIQ Q++P L +D+I A+TGSGKT AF L LL Q L
Sbjct: 10 PLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL---QKL 66
Query: 1469 PKIARMEDADQ-GPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFR 1526
D + A+++ PTRELA Q+ +E + + I+ + + GG+ Q
Sbjct: 67 -------DVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS 119
Query: 1527 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 1586
L G I++ TPGR++D L L L+ +VLDEADRM+DMGF+ + I+ P
Sbjct: 120 LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP--- 176
Query: 1587 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV-GK 1645
RQT++F+AT P + +++ + R P V + S
Sbjct: 177 ----------------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDL 214
Query: 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV--IIFVNQKKGADVLAKGLEKLGYNAC 1703
P IEQ Y +S ++ L +L +P ++F N KK +A L G++A
Sbjct: 215 PA--IEQRFYEVSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSAL 270
Query: 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763
LHG Q R+ L S +LVATDVA RG+DIK + VINY++A+ E + HRI
Sbjct: 271 ALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRI 330
Query: 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCP-PELLNHPDAQHKP 1816
GRTGRAG +GLA+S ++ ++ + ++ P P L P
Sbjct: 331 GRTGRAGSKGLALSLVAPEEMQRANAIEDYL-GRKLNWEPLPSLSPLSGVPLLP 383
|
Length = 460 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = 1e-88
Identities = 135/391 (34%), Positives = 200/391 (51%), Gaps = 44/391 (11%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
LP +L + ++GY E TPIQ Q++P L +D+I A+TGSGKT AF L LL Q L
Sbjct: 10 PLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL---QKL 66
Query: 794 PKIARMEDADQ-GPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFR 851
D + A+++ PTRELA Q+ +E + + I+ + + GG+ Q
Sbjct: 67 -------DVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS 119
Query: 852 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 911
L G I++ TPGR++D L L L+ +VLDEADRM+DMGF+ + I+ P
Sbjct: 120 LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP--- 176
Query: 912 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV-GK 970
RQT++F+AT P + +++ + R P V + S
Sbjct: 177 ----------------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDL 214
Query: 971 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV--IIFVNQKKGADVLAKGLEKLGYNAC 1028
P IEQ Y +S ++ L +L +P ++F N KK +A L G++A
Sbjct: 215 PA--IEQRFYEVSPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSAL 270
Query: 1029 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1088
LHG Q R+ L S +LVATDVA RG+DIK + VINY++A+ E + HRI
Sbjct: 271 ALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRI 330
Query: 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
GRTGRAG +GLA+S ++ ++ +
Sbjct: 331 GRTGRAGSKGLALSLVAPEEMQRANAIEDYL 361
|
Length = 460 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 5e-86
Identities = 149/454 (32%), Positives = 244/454 (53%), Gaps = 38/454 (8%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
++ + R I +KG VP P+ ++ LP ++L +E GY PTPIQ QAIP
Sbjct: 95 LSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPA 154
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME-DADQGPYAIIMAPTRELAQQ 1495
L R ++ A+TGSGKT +FL+P+ I I + P A+++ PTREL Q
Sbjct: 155 ALSGRSLLVSADTGSGKTASFLVPI---ISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQ 211
Query: 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555
+E++ G L +T LVVGG + +Q +R++ G E+++ TPGRLID+L + L+
Sbjct: 212 VEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNV 271
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 1615
+ +VLDE D M++ GF V +I + + +P Q ++
Sbjct: 272 SVLVLDEVDCMLERGFRDQVMQIFQALS----QP----------------------QVLL 305
Query: 1616 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV- 1674
F+AT+ P VE+ A S + + IG+ +P + ++Q+ + + K++KL ++L
Sbjct: 306 FSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQH 365
Query: 1675 -KKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1732
K P ++FV+ + GAD+LA + + G A ++HG K ++R + S G ++VAT
Sbjct: 366 FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425
Query: 1733 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
V GRG+D+ V VI +DM +I++Y H+IGR R G++G A+ F ++D +LF +L
Sbjct: 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485
Query: 1793 MMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRR 1826
++ SS + P EL N G+ KK+R
Sbjct: 486 LLKSSGAAI-PRELANSRYL----GSGRKRKKKR 514
|
Length = 518 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 1e-84
Identities = 141/425 (33%), Positives = 233/425 (54%), Gaps = 33/425 (7%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
++ + R I +KG VP P+ ++ LP ++L +E GY PTPIQ QAIP
Sbjct: 95 LSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPA 154
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME-DADQGPYAIIMAPTRELAQQ 820
L R ++ A+TGSGKT +FL+P+ I I + P A+++ PTREL Q
Sbjct: 155 ALSGRSLLVSADTGSGKTASFLVPI---ISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQ 211
Query: 821 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880
+E++ G L +T LVVGG + +Q +R++ G E+++ TPGRLID+L + L+
Sbjct: 212 VEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNV 271
Query: 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940
+ +VLDE D M++ GF V +I + + +P Q ++
Sbjct: 272 SVLVLDEVDCMLERGFRDQVMQIFQALS----QP----------------------QVLL 305
Query: 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV- 999
F+AT+ P VE+ A S + + IG+ +P + ++Q+ + + K++KL ++L
Sbjct: 306 FSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQH 365
Query: 1000 -KKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1057
K P ++FV+ + GAD+LA + + G A ++HG K ++R + S G ++VAT
Sbjct: 366 FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425
Query: 1058 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
V GRG+D+ V VI +DM +I++Y H+IGR R G++G A+ F ++D +LF +L
Sbjct: 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485
Query: 1118 MMISS 1122
++ SS
Sbjct: 486 LLKSS 490
|
Length = 518 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 2e-80
Identities = 143/385 (37%), Positives = 218/385 (56%), Gaps = 28/385 (7%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L +IL + + GY EPTPIQ+QAIP L+ RD++ A+TG+GKT F LPLL Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL---QHLI 64
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+ A+I+ PTRELA QI E + L IR+++V GG+S Q +LR
Sbjct: 65 TRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG 124
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
G ++++ATPGRL+D+ + L+Q +VLDEADRM+DMGF D++++L +P
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK---- 180
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974
RQ ++F+AT ++ LA L P + + +E+
Sbjct: 181 ---------------------RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQ 219
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+ Q V+ + ++ KR+ L +++ +G + V++F K GA+ LA+ L K G + +HG K
Sbjct: 220 VTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNK 279
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
Q R AL K G +LVATD+A RG+DI+++ V+NY++ EDY HRIGRTGRA
Sbjct: 280 SQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339
Query: 1095 GKEGLAVSFCTKDDSHLFYDLKQMM 1119
G A+S D+ L D+++++
Sbjct: 340 AATGEALSLVCVDEHKLLRDIEKLL 364
|
Length = 456 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 2e-80
Identities = 143/385 (37%), Positives = 218/385 (56%), Gaps = 28/385 (7%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L +IL + + GY EPTPIQ+QAIP L+ RD++ A+TG+GKT F LPLL Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL---QHLI 64
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+ A+I+ PTRELA QI E + L IR+++V GG+S Q +LR
Sbjct: 65 TRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG 124
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
G ++++ATPGRL+D+ + L+Q +VLDEADRM+DMGF D++++L +P
Sbjct: 125 GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK---- 180
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649
RQ ++F+AT ++ LA L P + + +E+
Sbjct: 181 ---------------------RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQ 219
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+ Q V+ + ++ KR+ L +++ +G + V++F K GA+ LA+ L K G + +HG K
Sbjct: 220 VTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNK 279
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
Q R AL K G +LVATD+A RG+DI+++ V+NY++ EDY HRIGRTGRA
Sbjct: 280 SQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQMM 1794
G A+S D+ L D+++++
Sbjct: 340 AATGEALSLVCVDEHKLLRDIEKLL 364
|
Length = 456 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 272 bits (696), Expect = 2e-79
Identities = 145/548 (26%), Positives = 217/548 (39%), Gaps = 98/548 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ +G+ EPTPIQ AIP+ L RD++G A+TG+GKT AFLLPLL KI + +
Sbjct: 44 LKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQ------KILKSVER 97
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A+I+APTRELA QI EE K G L G+R +V GG+S +Q L+ G +IV+A
Sbjct: 98 KYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVA 156
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D+++ L L+ +VLDEADRM+DMGF D++KIL+ +P
Sbjct: 157 TPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------------- 203
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
RQT++F+A
Sbjct: 204 ------------PDRQTLLFSA-------------------------------------- 213
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS--VGKPTERIEQIVY-ILSEQDKRKKL 297
TMP + LAR YL P + + + + ++I+Q + SE++K + L
Sbjct: 214 ---------TMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELL 264
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+++L + VI+FV K+ + LA+ L K G+ LHG QE+R+ AL K G
Sbjct: 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGEL 324
Query: 358 DILMAGDRRSRSRSPPRKRR-----SRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
+L+A D +R P DY R R + E
Sbjct: 325 RVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVK 384
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVIS 472
+ + E+ + + R S K+
Sbjct: 385 KLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKK----------L 434
Query: 473 DEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKK 532
+ +L +LLA E + E E
Sbjct: 435 KSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPNSADDIEYILKGLS 494
Query: 533 MEEERKKR 540
E +
Sbjct: 495 YRAEERTA 502
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 1e-78
Identities = 102/234 (43%), Positives = 141/234 (60%), Gaps = 32/234 (13%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L E+L I +G+ +PTPIQ +AIP L RD+IG A+TGSGKT AFL+P+L
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
+ PK GP A+I+APTRELA QI E K G ++ V++ GG S ++Q
Sbjct: 61 LDPSPK-------KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQI 113
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
+L+ G IV+ATPGRL+D+LE L L++ Y+VLDEADRM+DMGFE +++IL+ +P
Sbjct: 114 RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP- 172
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
K RQT++F+ATMP V LAR +LR P +
Sbjct: 173 ------------------------KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 1e-78
Identities = 102/234 (43%), Positives = 141/234 (60%), Gaps = 32/234 (13%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L E+L I +G+ +PTPIQ +AIP L RD+IG A+TGSGKT AFL+P+L
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
+ PK GP A+I+APTRELA QI E K G ++ V++ GG S ++Q
Sbjct: 61 LDPSPK-------KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQI 113
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
+L+ G IV+ATPGRL+D+LE L L++ Y+VLDEADRM+DMGFE +++IL+ +P
Sbjct: 114 RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP- 172
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
K RQT++F+ATMP V LAR +LR P +
Sbjct: 173 ------------------------KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 8e-74
Identities = 145/371 (39%), Positives = 194/371 (52%), Gaps = 80/371 (21%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ G+ EPTPIQ Q PI L RD+IG+AETGSGKTLAFLLP +V I + P + R D
Sbjct: 145 LKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-RYGD- 202
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++APTRELA+QI E+ NKFG IR + GG+ + Q + LR G EI+IA
Sbjct: 203 --GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIAC 260
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRLID LE+ L + TY+VLDEADRM+DMGFEP ++KI V+ ++PD
Sbjct: 261 PGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKI-----VSQIRPD------- 308
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQT+M
Sbjct: 309 -------------RQTLM------------------------------------------ 313
Query: 242 RQTVMFTATMPPAVERLARSYLRR-PATVYIGSVG-KPTERIEQIVYILSEQDKRKKLME 299
++AT P V+ LAR + P V +GS+ I+Q V+++ E +KR KL
Sbjct: 314 -----WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKM 368
Query: 300 VLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+L R ++ ++IFV KKGAD L K L G+ A +HG K QE+R LN K G
Sbjct: 369 LLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS 428
Query: 358 DILMAGDRRSR 368
I++A D SR
Sbjct: 429 PIMIATDVASR 439
|
Length = 545 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-71
Identities = 144/431 (33%), Positives = 221/431 (51%), Gaps = 42/431 (9%)
Query: 1397 KVPDPVRNWK----------------EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
+ P P WK + +L E++ I +G+ TPIQ Q + L
Sbjct: 65 RKPKPASLWKLEDFVVEPQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAG 124
Query: 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500
D IG A+TG+GKT AFL+ ++ + P + P A+I+APTREL QI ++
Sbjct: 125 HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE--PRALIIAPTRELVVQIAKDA 182
Query: 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIV 1559
G+ + VGG+ ++Q +L C+I++ATPGRL+D + + L+ +V
Sbjct: 183 AALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242
Query: 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 1619
LDEADRM+DMGF P V++I+ P +K+ RQT++F+AT
Sbjct: 243 LDEADRMLDMGFIPQVRQIIRQTP-----------------------RKEERQTLLFSAT 279
Query: 1620 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVI 1679
V LA+ + PA V I ++ +EQ VY ++ DK K L ++ + + V+
Sbjct: 280 FTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVM 339
Query: 1680 IFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739
+F N+K + + L K G NA L G Q +R L + G +LVATDVAGRGI
Sbjct: 340 VFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399
Query: 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1799
I +S VIN+ + + +DY HRIGRTGRAG G+++SF +DD+ ++++++
Sbjct: 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459
Query: 1800 STCPPELLNHP 1810
PP L P
Sbjct: 460 CEMPPAELLKP 470
|
Length = 475 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 3e-71
Identities = 91/212 (42%), Positives = 128/212 (60%), Gaps = 33/212 (15%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I +G+ +PTPIQ +AIP L RD+IG A+TGSGKT AFL+P+L + PK
Sbjct: 14 IYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------- 66
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP A+I+APTRELA QI E K G ++ V++ GG S ++Q +L+ G IV+AT
Sbjct: 67 KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVAT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D+LE L L++ Y+VLDEADRM+DMGFE +++IL+ +P
Sbjct: 127 PGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP-------------- 172
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYM 213
K RQT++F+ATMP ++ +
Sbjct: 173 -----------KDRQTLLFSATMPK-EVRDLA 192
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 7e-71
Identities = 140/406 (34%), Positives = 211/406 (51%), Gaps = 42/406 (10%)
Query: 722 KVPDPVRNWK----------------EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 765
+ P P WK + +L E++ I +G+ TPIQ Q + L
Sbjct: 65 RKPKPASLWKLEDFVVEPQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAG 124
Query: 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825
D IG A+TG+GKT AFL+ ++ + P + P A+I+APTREL QI ++
Sbjct: 125 HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE--PRALIIAPTRELVVQIAKDA 182
Query: 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIV 884
G+ + VGG+ ++Q +L C+I++ATPGRL+D + + L+ +V
Sbjct: 183 AALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242
Query: 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 944
LDEADRM+DMGF P V++I+ P +K+ RQT++F+AT
Sbjct: 243 LDEADRMLDMGFIPQVRQIIRQTP-----------------------RKEERQTLLFSAT 279
Query: 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVI 1004
V LA+ + PA V I ++ +EQ VY ++ DK K L ++ + + V+
Sbjct: 280 FTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVM 339
Query: 1005 IFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064
+F N+K + + L K G NA L G Q +R L + G +LVATDVAGRGI
Sbjct: 340 VFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399
Query: 1065 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
I +S VIN+ + + +DY HRIGRTGRAG G+++SF +DD+
Sbjct: 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAF 445
|
Length = 475 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 1e-70
Identities = 167/531 (31%), Positives = 258/531 (48%), Gaps = 47/531 (8%)
Query: 743 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802
+E G+ TPIQ +P+ L D+ G A+TG+GKTLAFL+ ++ + S P +A +
Sbjct: 24 LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPE 83
Query: 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 862
D P A+I+APTRELA QI ++ KFG LG+R LV GG+ ++Q L+ G +++IAT
Sbjct: 84 D--PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIAT 141
Query: 863 PGRLIDVLENRYLV-LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 921
PGRLID ++ +V L+ C VLDEADRM D+GF D++ +L MP
Sbjct: 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP------------- 188
Query: 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 981
++ RQT++F+AT+ V LA ++ P + + + R+ Q +Y
Sbjct: 189 ----------ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYF 238
Query: 982 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041
++++K+ L+ +L+R ++FVN K + +A+ LE+ GY L G Q++RE
Sbjct: 239 PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRES 298
Query: 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1101
LN + G +ILVATDVA RG+ I V V NYD+ EDY HRIGRT R G+EG A+
Sbjct: 299 LLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358
Query: 1102 SFCTKDDSHLFYD----LKQMMISSPVTGR-----AGKEGLAVSFCTKDDSHLFYDLKQM 1152
SF + + D ++Q + PVT + V DD
Sbjct: 359 SFACERYAMSLPDIEAYIEQKIPVEPVTAELLTPLPRPPRVPVEGEEADDEA-------- 410
Query: 1153 MISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKK 1212
V T E A+ + +G SRS + R D + + ++
Sbjct: 411 --GDSVGTIFREAREQRAAEEQRRGGGRSGPGG-GSRSGSVGGGGRRDGAGADGKPRPRR 467
Query: 1213 SPQCEA-QSSRFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKEREGEAI 1262
P+ E + + P +++ D E + + R G +
Sbjct: 468 KPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGRPV 518
|
Length = 572 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 2e-70
Identities = 142/362 (39%), Positives = 210/362 (58%), Gaps = 26/362 (7%)
Query: 1418 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477
+E G+ TPIQ +P+ L D+ G A+TG+GKTLAFL+ ++ + S P +A +
Sbjct: 24 LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPE 83
Query: 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 1537
D P A+I+APTRELA QI ++ KFG LG+R LV GG+ ++Q L+ G +++IAT
Sbjct: 84 D--PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIAT 141
Query: 1538 PGRLIDVLENRYLV-LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 1596
PGRLID ++ +V L+ C VLDEADRM D+GF D++ +L MP
Sbjct: 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP------------- 188
Query: 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 1656
++ RQT++F+AT+ V LA ++ P + + + R+ Q +Y
Sbjct: 189 ----------ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYF 238
Query: 1657 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716
++++K+ L+ +L+R ++FVN K + +A+ LE+ GY L G Q++RE
Sbjct: 239 PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRES 298
Query: 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776
LN + G +ILVATDVA RG+ I V V NYD+ EDY HRIGRT R G+EG A+
Sbjct: 299 LLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358
Query: 1777 SF 1778
SF
Sbjct: 359 SF 360
|
Length = 572 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 3e-69
Identities = 135/379 (35%), Positives = 191/379 (50%), Gaps = 34/379 (8%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
+ E L +LE ++ GY PT IQ +AIP L RD++G A TG+GKT AFLLP L
Sbjct: 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL 60
Query: 788 VWIQSLPKIARMEDADQGPYAI-IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
+ P+ GP I I+ PTRELA Q+ ++ + + + GG++
Sbjct: 61 QHLLDFPR------RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYM 114
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
+IV+ATPGRL+ ++ ++LDEADRM+DMGF D++ I
Sbjct: 115 NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI--- 171
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP-PAVERLARSYLRRPATVYI 965
AE + +QT++F+AT+ AV+ A L P V
Sbjct: 172 -----------AAETRWR-----------KQTLLFSATLEGDAVQDFAERLLNDPVEVEA 209
Query: 966 GSVGKPTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
+ ++I Q Y + + K L +L + I+FV ++ LA L K G
Sbjct: 210 EPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG 269
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
N C L G Q +R A+ L G ++LVATDVA RGIDI DVS VIN+DM +S + Y
Sbjct: 270 INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTY 329
Query: 1085 THRIGRTGRAGKEGLAVSF 1103
HRIGRTGRAG++G A+S
Sbjct: 330 LHRIGRTGRAGRKGTAISL 348
|
Length = 434 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 3e-69
Identities = 135/379 (35%), Positives = 191/379 (50%), Gaps = 34/379 (8%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
+ E L +LE ++ GY PT IQ +AIP L RD++G A TG+GKT AFLLP L
Sbjct: 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPAL 60
Query: 1463 VWIQSLPKIARMEDADQGPYAI-IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
+ P+ GP I I+ PTRELA Q+ ++ + + + GG++
Sbjct: 61 QHLLDFPR------RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYM 114
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
+IV+ATPGRL+ ++ ++LDEADRM+DMGF D++ I
Sbjct: 115 NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI--- 171
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP-PAVERLARSYLRRPATVYI 1640
AE + +QT++F+AT+ AV+ A L P V
Sbjct: 172 -----------AAETRWR-----------KQTLLFSATLEGDAVQDFAERLLNDPVEVEA 209
Query: 1641 GSVGKPTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1699
+ ++I Q Y + + K L +L + I+FV ++ LA L K G
Sbjct: 210 EPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG 269
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
N C L G Q +R A+ L G ++LVATDVA RGIDI DVS VIN+DM +S + Y
Sbjct: 270 INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTY 329
Query: 1760 THRIGRTGRAGKEGLAVSF 1778
HRIGRTGRAG++G A+S
Sbjct: 330 LHRIGRTGRAGRKGTAISL 348
|
Length = 434 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 3e-67
Identities = 129/370 (34%), Positives = 186/370 (50%), Gaps = 25/370 (6%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
+L +++E +EK G+ TPIQ A+P+ L RD+ G A+TG+GKT+AFL ++ S
Sbjct: 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSH 73
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
P + P A+IMAPTRELA QI + G++ L GG ++Q L
Sbjct: 74 PAPE--DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE 131
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
G +I+I T GRLID + ++ L +VLDEADRM D+GF D++ + MP
Sbjct: 132 SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA--- 188
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 973
R ++F+AT+ V LA ++ P V + K
Sbjct: 189 --------------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGH 228
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
RI++ ++ S ++K + L ++ IIF N K + + L G+ L G
Sbjct: 229 RIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGD 288
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++R L G DILVATDVA RG+ I V+ V NYD+ EDY HRIGRTGR
Sbjct: 289 VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR 348
Query: 1094 AGKEGLAVSF 1103
AG G ++S
Sbjct: 349 AGASGHSISL 358
|
Length = 423 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 3e-67
Identities = 129/370 (34%), Positives = 186/370 (50%), Gaps = 25/370 (6%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
+L +++E +EK G+ TPIQ A+P+ L RD+ G A+TG+GKT+AFL ++ S
Sbjct: 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSH 73
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
P + P A+IMAPTRELA QI + G++ L GG ++Q L
Sbjct: 74 PAPE--DRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE 131
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
G +I+I T GRLID + ++ L +VLDEADRM D+GF D++ + MP
Sbjct: 132 SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA--- 188
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 1648
R ++F+AT+ V LA ++ P V + K
Sbjct: 189 --------------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGH 228
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
RI++ ++ S ++K + L ++ IIF N K + + L G+ L G
Sbjct: 229 RIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGD 288
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++R L G DILVATDVA RG+ I V+ V NYD+ EDY HRIGRTGR
Sbjct: 289 VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR 348
Query: 1769 AGKEGLAVSF 1778
AG G ++S
Sbjct: 349 AGASGHSISL 358
|
Length = 423 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 3e-67
Identities = 146/386 (37%), Positives = 208/386 (53%), Gaps = 35/386 (9%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L ILE + +GY +P+PIQ + IP L RD++G+A+TGSGKT AF LPLL +
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL 72
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 853
K P +++APTRELA Q+ E F + G+ V + GG + Q LR
Sbjct: 73 K---------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
G +IV+ TPGRL+D L+ L L++ + +VLDEAD M+ MGF DV+ I+ +P +
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH-- 181
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 973
QT +F+ATMP A+ R+ R +++ P V I S
Sbjct: 182 -----------------------QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP 218
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I Q + + K + L+ L IIFV K +A+ LE+ GYN+ L+G
Sbjct: 219 DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q RE L LK G DIL+ATDVA RG+D++ +S+V+NYD+ E Y HRIGRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQMM 1119
AG+ G A+ F + L ++++ M
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTM 364
|
Length = 629 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 3e-67
Identities = 146/386 (37%), Positives = 208/386 (53%), Gaps = 35/386 (9%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L ILE + +GY +P+PIQ + IP L RD++G+A+TGSGKT AF LPLL +
Sbjct: 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL 72
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 1528
K P +++APTRELA Q+ E F + G+ V + GG + Q LR
Sbjct: 73 K---------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
G +IV+ TPGRL+D L+ L L++ + +VLDEAD M+ MGF DV+ I+ +P +
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH-- 181
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 1648
QT +F+ATMP A+ R+ R +++ P V I S
Sbjct: 182 -----------------------QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP 218
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I Q + + K + L+ L IIFV K +A+ LE+ GYN+ L+G
Sbjct: 219 DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD 278
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q RE L LK G DIL+ATDVA RG+D++ +S+V+NYD+ E Y HRIGRTGR
Sbjct: 279 MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQMM 1794
AG+ G A+ F + L ++++ M
Sbjct: 339 AGRAGRALLFVENRERRLLRNIERTM 364
|
Length = 629 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 1e-60
Identities = 123/386 (31%), Positives = 201/386 (52%), Gaps = 37/386 (9%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+ V ++ L ++L I G+ +P+ IQ++ I L D IG A++G+GKT F+
Sbjct: 25 EIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFV- 83
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
I +L I +A Q A+I+APTRELAQQI++ G L +R VGG
Sbjct: 84 -----IAALQLIDYDLNACQ---ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTV 135
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
+ +L+ G +V+ TPGR+ D+++ R+L ++ +LDEAD M+ GF+ + +
Sbjct: 136 VRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVF 195
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
+ +P PD Q +F+ATMP + L ++R P +
Sbjct: 196 KKLP-----PDV--------------------QVALFSATMPNEILELTTKFMRDPKRIL 230
Query: 965 IGSVGKPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
+ E I Q Y+ E+++ K L ++ II+ N ++ D L K + +
Sbjct: 231 VKKDELTLEGIRQF-YVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE 289
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1082
+ +HG Q+ R+L + + GS +L+ TD+ RGID++ VS+VINYD+ S E
Sbjct: 290 RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPE 349
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDD 1108
+Y HRIGR+GR G++G+A++F T DD
Sbjct: 350 NYIHRIGRSGRFGRKGVAINFVTPDD 375
|
Length = 401 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 1e-60
Identities = 123/386 (31%), Positives = 201/386 (52%), Gaps = 37/386 (9%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+ V ++ L ++L I G+ +P+ IQ++ I L D IG A++G+GKT F+
Sbjct: 25 EIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFV- 83
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
I +L I +A Q A+I+APTRELAQQI++ G L +R VGG
Sbjct: 84 -----IAALQLIDYDLNACQ---ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTV 135
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
+ +L+ G +V+ TPGR+ D+++ R+L ++ +LDEAD M+ GF+ + +
Sbjct: 136 VRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVF 195
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
+ +P PD Q +F+ATMP + L ++R P +
Sbjct: 196 KKLP-----PDV--------------------QVALFSATMPNEILELTTKFMRDPKRIL 230
Query: 1640 IGSVGKPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1697
+ E I Q Y+ E+++ K L ++ II+ N ++ D L K + +
Sbjct: 231 VKKDELTLEGIRQF-YVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE 289
Query: 1698 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1757
+ +HG Q+ R+L + + GS +L+ TD+ RGID++ VS+VINYD+ S E
Sbjct: 290 RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPE 349
Query: 1758 DYTHRIGRTGRAGKEGLAVSFCTKDD 1783
+Y HRIGR+GR G++G+A++F T DD
Sbjct: 350 NYIHRIGRSGRFGRKGVAINFVTPDD 375
|
Length = 401 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 1e-54
Identities = 81/203 (39%), Positives = 113/203 (55%), Gaps = 36/203 (17%)
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ QAIP L +D++ A TGSGKTLAFLLP+L + GP A+++
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPIL---------QALLPKKGGPQALVL 51
Query: 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVL 870
APTRELA+QI EE K LG+R L+ GG S +EQ +L+ G +I++ TPGRL+D+L
Sbjct: 52 APTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL 111
Query: 871 ENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 929
L +L +VLDEA R++DMGF D+++IL +P
Sbjct: 112 RRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP--------------------- 150
Query: 930 NSKKKYRQTVMFTATMPPAVERL 952
RQ ++ +AT+P +E L
Sbjct: 151 ----PDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 1e-54
Identities = 81/203 (39%), Positives = 113/203 (55%), Gaps = 36/203 (17%)
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ QAIP L +D++ A TGSGKTLAFLLP+L + GP A+++
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPIL---------QALLPKKGGPQALVL 51
Query: 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVL 1545
APTRELA+QI EE K LG+R L+ GG S +EQ +L+ G +I++ TPGRL+D+L
Sbjct: 52 APTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL 111
Query: 1546 ENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 1604
L +L +VLDEA R++DMGF D+++IL +P
Sbjct: 112 RRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP--------------------- 150
Query: 1605 NSKKKYRQTVMFTATMPPAVERL 1627
RQ ++ +AT+P +E L
Sbjct: 151 ----PDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 4e-53
Identities = 79/197 (40%), Positives = 110/197 (55%), Gaps = 36/197 (18%)
Query: 11 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 70
TPIQ QAIP L +D++ A TGSGKTLAFLLP+L + GP A+++
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPIL---------QALLPKKGGPQALVL 51
Query: 71 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVL 129
APTRELA+QI EE K LG+R L+ GG S +EQ +L+ G +I++ TPGRL+D+L
Sbjct: 52 APTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL 111
Query: 130 ENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 188
L +L +VLDEA R++DMGF D+++IL +P
Sbjct: 112 RRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP--------------------- 150
Query: 189 NSKKKYRQTVMFTATMP 205
RQ ++ +AT+P
Sbjct: 151 ----PDRQILLLSATLP 163
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 3e-51
Identities = 115/367 (31%), Positives = 175/367 (47%), Gaps = 75/367 (20%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ + GY EPTPIQ+QAIP L+ RD++ A+TG+GKT F LPLL Q L
Sbjct: 16 VAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL---QHLITRQPHAKG 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+I+ PTRELA QI E + L IR+++V GG+S Q +LR G ++++AT
Sbjct: 73 RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVAT 132
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D+ + L+Q +VLDEADRM+DMGF D++++L +P
Sbjct: 133 PGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK------------ 180
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQ ++F+AT D+ K LA
Sbjct: 181 -------------RQNLLFSATF---------------------SDDIKALAE------- 199
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
L P + + +E++ Q V+ + ++ KR+ L +++
Sbjct: 200 -------------------KLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+G + V++F K GA+ LA+ L K G + +HG K Q R AL K G +L+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 362 AGDRRSR 368
A D +R
Sbjct: 301 ATDIAAR 307
|
Length = 456 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-49
Identities = 85/238 (35%), Positives = 122/238 (51%), Gaps = 39/238 (16%)
Query: 743 IEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801
IEK G+ P Q++AI L RD+I A TGSGKTLA LLP L ++
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------- 53
Query: 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVI 860
G +++ PTRELA+Q EE K G LG++ V + GG S+ EQ +L G +I++
Sbjct: 54 ---GGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILV 110
Query: 861 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 920
TPGRL+D+LEN L L+ ++LDEA R++D GF ++K+L+ +P
Sbjct: 111 TTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP------------ 158
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
K Q ++ +AT P +E L +L P + +G P E IEQ
Sbjct: 159 -------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGF--TPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 2e-49
Identities = 85/238 (35%), Positives = 122/238 (51%), Gaps = 39/238 (16%)
Query: 1418 IEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476
IEK G+ P Q++AI L RD+I A TGSGKTLA LLP L ++
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------- 53
Query: 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVI 1535
G +++ PTRELA+Q EE K G LG++ V + GG S+ EQ +L G +I++
Sbjct: 54 ---GGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILV 110
Query: 1536 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 1595
TPGRL+D+LEN L L+ ++LDEA R++D GF ++K+L+ +P
Sbjct: 111 TTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP------------ 158
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 1653
K Q ++ +AT P +E L +L P + +G P E IEQ
Sbjct: 159 -------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGF--TPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 4e-48
Identities = 102/365 (27%), Positives = 170/365 (46%), Gaps = 80/365 (21%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME-D 60
+E GY PTPIQ QAIP L R ++ A+TGSGKT +FL+P+ I I
Sbjct: 136 LETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPI---ISRCCTIRSGHPS 192
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ P A+++ PTREL Q+E++ G L +T LVVGG + +Q +R++ G E+++
Sbjct: 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVG 252
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLID+L + L+ + +VLDE D M++ GF V +I + + +P
Sbjct: 253 TPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS----QP------- 301
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
Q ++F+AT+
Sbjct: 302 ---------------QVLLFSATVS----------------------------------- 311
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
P VE+ A S + + IG+ +P + ++Q+ + + K++KL ++
Sbjct: 312 ------------PEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDI 359
Query: 301 LNRGV--KKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSK 357
L K P ++FV+ + GAD+LA + + G A ++HG K ++R + S G
Sbjct: 360 LKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEV 419
Query: 358 DILMA 362
+++A
Sbjct: 420 PVIVA 424
|
Length = 518 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-45
Identities = 103/368 (27%), Positives = 155/368 (42%), Gaps = 91/368 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY E TPIQ Q++P L +D+I A+TGSGKT AF L LL Q L D
Sbjct: 19 LNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLL---QKL-------DV 68
Query: 62 DQ-GPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ A+++ PTRELA Q+ +E + + I+ + + GG+ Q L G I++
Sbjct: 69 KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIV 128
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 179
TPGR++D L L L+ +VLDEADRM+DMGF+ + I+ P
Sbjct: 129 GTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP------------ 176
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
RQT++F
Sbjct: 177 -------------ARRQTLLF--------------------------------------- 184
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV-GKPTERIEQIVYILSEQDKRKKLM 298
+AT P + +++ + R P V + S P IEQ Y +S ++ L
Sbjct: 185 --------SATYPEGIAAISQRFQRDPVEVKVESTHDLPA--IEQRFYEVSPDERLPALQ 234
Query: 299 EVLNRGVKKPV--IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
+L +P ++F N KK +A L G++A LHG Q R+ L S
Sbjct: 235 RLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS 292
Query: 357 KDILMAGD 364
+L+A D
Sbjct: 293 CSVLVATD 300
|
Length = 460 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (436), Expect = 8e-45
Identities = 116/368 (31%), Positives = 184/368 (50%), Gaps = 73/368 (19%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E G+ TPIQ +P+ L D+ G A+TG+GKTLAFL+ ++ + S P +A +
Sbjct: 24 LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPE 83
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D P A+I+APTRELA QI ++ KFG LG+R LV GG+ ++Q L+ G +++IAT
Sbjct: 84 D--PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIAT 141
Query: 122 PGRLIDVLENRYLV-LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRLID ++ +V L+ C VLDEADRM D+GF D++ +L MP
Sbjct: 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMP------------- 188
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
++ RQT++F+AT+ ++LE
Sbjct: 189 ----------ERGTRQTLLFSATL-SHRVLE----------------------------- 208
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
LA ++ P + + + R+ Q +Y ++++K+ L+ +
Sbjct: 209 -----------------LAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGL 251
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
L+R ++FVN K + +A+ LE+ GY L G Q++RE LN + G +IL
Sbjct: 252 LSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311
Query: 361 MAGDRRSR 368
+A D +R
Sbjct: 312 VATDVAAR 319
|
Length = 572 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 37/208 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
IEK G+ P Q++AI L RD+I A TGSGKTLA LLP L ++
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------- 53
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVI 119
G +++ PTRELA+Q EE K G LG++ V + GG S+ EQ +L G +I++
Sbjct: 54 ---GGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILV 110
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 179
TPGRL+D+LEN L L+ ++LDEA R++D GF ++K+L+ +P
Sbjct: 111 TTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP------------ 158
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPA 207
K Q ++ +AT P
Sbjct: 159 -------------KNVQLLLLSATPPEE 173
|
Length = 201 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 7e-40
Identities = 107/368 (29%), Positives = 165/368 (44%), Gaps = 73/368 (19%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I +G+ TPIQ Q + L D IG A+TG+GKT AFL+ ++ + P
Sbjct: 102 IHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMG 161
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIA 120
+ P A+I+APTREL QI ++ G+ + VGG+ ++Q +L C+I++A
Sbjct: 162 E--PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVA 219
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D + + L+ +VLDEADRM+DMGF P V++I+ P
Sbjct: 220 TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP------------- 266
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+K+ RQT++F+AT T+D
Sbjct: 267 ----------RKEERQTLLFSATF-----------------TDD---------------- 283
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
V LA+ + PA V I ++ +EQ VY ++ DK K L +
Sbjct: 284 --------------VMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNL 329
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ + + V++F N+K + + L K G NA L G Q +R L + G +L
Sbjct: 330 VTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389
Query: 361 MAGDRRSR 368
+A D R
Sbjct: 390 VATDVAGR 397
|
Length = 475 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-37
Identities = 115/368 (31%), Positives = 164/368 (44%), Gaps = 82/368 (22%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ +GY +P+PIQ + IP L RD++G+A+TGSGKT AF LPLL + K
Sbjct: 21 LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELK------- 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
P +++APTRELA Q+ E F + G+ V + GG + Q LR G +IV+
Sbjct: 74 --APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVG 131
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D L+ L L++ + +VLDEAD M+ MGF DV+ I+ +P +
Sbjct: 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH---------- 181
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
QT +F+ATM
Sbjct: 182 ---------------QTALFSATM------------------------------------ 190
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
P A+ R+ R +++ P V I S I Q + + K + L+
Sbjct: 191 -----------PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
L IIFV K +A+ LE+ GYN+ L+G Q RE L LK G DIL
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 361 MAGDRRSR 368
+A D +R
Sbjct: 300 IATDVAAR 307
|
Length = 629 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 36/180 (20%)
Query: 25 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 84
RD++ A TGSGKTLA LLP+L + D+ +G +++APTRELA Q+ E
Sbjct: 1 RDVLLAAPTGSGKTLAALLPIL----------ELLDSLKGGQVLVLAPTRELANQVAERL 50
Query: 85 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 144
+ GI+ ++GG S ++Q L +IV+ TPGRL+D LE L L + ++L
Sbjct: 51 KELF-GEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLIL 109
Query: 145 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 204
DEA R+++ GF KIL K RQ ++ +AT
Sbjct: 110 DEAHRLLNQGFGLLGLKILLK-------------------------LPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 36/180 (20%)
Query: 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825
RD++ A TGSGKTLA LLP+L + D+ +G +++APTRELA Q+ E
Sbjct: 1 RDVLLAAPTGSGKTLAALLPIL----------ELLDSLKGGQVLVLAPTRELANQVAERL 50
Query: 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885
+ GI+ ++GG S ++Q L +IV+ TPGRL+D LE L L + ++L
Sbjct: 51 KELF-GEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLIL 109
Query: 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 945
DEA R+++ GF KIL K RQ ++ +AT
Sbjct: 110 DEAHRLLNQGFGLLGLKILLK-------------------------LPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 36/180 (20%)
Query: 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500
RD++ A TGSGKTLA LLP+L + D+ +G +++APTRELA Q+ E
Sbjct: 1 RDVLLAAPTGSGKTLAALLPIL----------ELLDSLKGGQVLVLAPTRELANQVAERL 50
Query: 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560
+ GI+ ++GG S ++Q L +IV+ TPGRL+D LE L L + ++L
Sbjct: 51 KELF-GEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLIL 109
Query: 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 1620
DEA R+++ GF KIL K RQ ++ +AT
Sbjct: 110 DEAHRLLNQGFGLLGLKILLK-------------------------LPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-36
Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 977 QIVYILSEQDKRKKLMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+ + E +K + L+E+L +KK V+IF KK D LA+ L K G LHG
Sbjct: 3 KQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
QE+RE L + G +LVATDV RGID+ +VS+VINYD+ S Y RIGR GRA
Sbjct: 63 SQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRA 122
Query: 1095 GKEGLAVSF 1103
G++G A+
Sbjct: 123 GQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-36
Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1652 QIVYILSEQDKRKKLMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+ + E +K + L+E+L +KK V+IF KK D LA+ L K G LHG
Sbjct: 3 KQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
QE+RE L + G +LVATDV RGID+ +VS+VINYD+ S Y RIGR GRA
Sbjct: 63 SQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRA 122
Query: 1770 GKEGLAVSF 1778
G++G A+
Sbjct: 123 GQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 9e-34
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 2/169 (1%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+EK G+ TPIQ A+P+ L RD+ G A+TG+GKT+AFL ++ S P +
Sbjct: 23 LEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--DRK 80
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P A+IMAPTRELA QI + G++ L GG ++Q L G +I+I T
Sbjct: 81 VNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGT 140
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
GRLID + ++ L +VLDEADRM D+GF D++ + MP N
Sbjct: 141 TGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN 189
|
Length = 423 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 4e-31
Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 7/162 (4%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ GY PT IQ +AIP L RD++G A TG+GKT AFLLP L + P+
Sbjct: 16 LQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------R 69
Query: 62 DQGPYAI-IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP I I+ PTRELA Q+ ++ + + + GG++ +IV+A
Sbjct: 70 KSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVA 129
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
TPGRL+ ++ ++LDEADRM+DMGF D++ I
Sbjct: 130 TPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI 171
|
Length = 434 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-30
Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 84/365 (23%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++ I L D IG A++G+GKT F+ I +L I +A Q
Sbjct: 47 GFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFV------IAALQLIDYDLNACQ-- 98
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+APTRELAQQI++ G L +R VGG + +L+ G +V+ TPGR+
Sbjct: 99 -ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRV 157
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
D+++ R+L ++ +LDEAD M+ GF+ + + + +P PD
Sbjct: 158 YDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP-----PDV---------- 202
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
Q +F+ATM P +ILE
Sbjct: 203 ----------QVALFSATM-PNEILE---------------------------------- 217
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK--KLMEVLNR 303
L ++R P + + E I Q Y+ E+++ K L ++
Sbjct: 218 ------------LTTKFMRDPKRILVKKDELTLEGIRQF-YVAVEKEEWKFDTLCDLYET 264
Query: 304 GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMAG 363
II+ N ++ D L K + + + +HG Q+ R+L + + GS +L+
Sbjct: 265 LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT 324
Query: 364 DRRSR 368
D +R
Sbjct: 325 DLLAR 329
|
Length = 401 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-27
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 1014 DVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI 1073
+ LA+ L++LG LHGG QE+RE L+ G +LVATDVA RG+D+ V +VI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 1074 NYDMAKSIEDYTHRIGRTGRAG 1095
YD+ S Y RIGR GRAG
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-27
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 1689 DVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI 1748
+ LA+ L++LG LHGG QE+RE L+ G +LVATDVA RG+D+ V +VI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 1749 NYDMAKSIEDYTHRIGRTGRAG 1770
YD+ S Y RIGR GRAG
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-27
Identities = 41/76 (53%), Positives = 49/76 (64%)
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
L K G LHGG QE+RE L + G +LVATDVAGRGID+ DV++VINYD+
Sbjct: 3 LRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPW 62
Query: 1080 SIEDYTHRIGRTGRAG 1095
+ Y RIGR GRAG
Sbjct: 63 NPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-27
Identities = 41/76 (53%), Positives = 49/76 (64%)
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
L K G LHGG QE+RE L + G +LVATDVAGRGID+ DV++VINYD+
Sbjct: 3 LRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPW 62
Query: 1755 SIEDYTHRIGRTGRAG 1770
+ Y RIGR GRAG
Sbjct: 63 NPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-21
Identities = 98/379 (25%), Positives = 161/379 (42%), Gaps = 63/379 (16%)
Query: 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803
+ GYA P Q++ I L +D + V TG GK+L + +P A + +
Sbjct: 11 QVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIP-----------ALLLE-- 57
Query: 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIV 859
G ++++P L + + + + GIR + LSREE+ +L+ G +++
Sbjct: 58 -GL-TLVVSPLISL-MKDQVDQLE---AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLL 111
Query: 860 IATPGRL-----IDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNL 912
+P RL +++L+ + L + +DEA + G F PD +++
Sbjct: 112 YISPERLMSPRFLELLKRLPISL-----VAIDEAHCISQWGHDFRPDYRRLG-------- 158
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVM-FTATMPPAVERLARSYLR-RPATVYIGSVGK 970
+L A V+ TAT P V R L + A ++ GS +
Sbjct: 159 -----------RLRAGLP-----NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR 202
Query: 971 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1030
P ++ + D+ L VL + K II+ +K + LA+ L K G +A
Sbjct: 203 PNLALKVVEK-GEPSDQLAFLATVLPQL-SKSGIIYCLTRKKVEELAEWLRKNGISAGAY 260
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090
H G E+RE + ++VAT+ G GID DV VI+YD+ SIE Y GR
Sbjct: 261 HAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGR 320
Query: 1091 TGRAGKEGLAVSFCTKDDS 1109
GR G A+ + +D
Sbjct: 321 AGRDGLPAEAILLYSPEDI 339
|
Length = 590 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-21
Identities = 98/379 (25%), Positives = 161/379 (42%), Gaps = 63/379 (16%)
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478
+ GYA P Q++ I L +D + V TG GK+L + +P A + +
Sbjct: 11 QVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIP-----------ALLLE-- 57
Query: 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIV 1534
G ++++P L + + + + GIR + LSREE+ +L+ G +++
Sbjct: 58 -GL-TLVVSPLISL-MKDQVDQLE---AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLL 111
Query: 1535 IATPGRL-----IDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNL 1587
+P RL +++L+ + L + +DEA + G F PD +++
Sbjct: 112 YISPERLMSPRFLELLKRLPISL-----VAIDEAHCISQWGHDFRPDYRRLG-------- 158
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVM-FTATMPPAVERLARSYLR-RPATVYIGSVGK 1645
+L A V+ TAT P V R L + A ++ GS +
Sbjct: 159 -----------RLRAGLP-----NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR 202
Query: 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705
P ++ + D+ L VL + K II+ +K + LA+ L K G +A
Sbjct: 203 PNLALKVVEK-GEPSDQLAFLATVLPQL-SKSGIIYCLTRKKVEELAEWLRKNGISAGAY 260
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1765
H G E+RE + ++VAT+ G GID DV VI+YD+ SIE Y GR
Sbjct: 261 HAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGR 320
Query: 1766 TGRAGKEGLAVSFCTKDDS 1784
GR G A+ + +D
Sbjct: 321 AGRDGLPAEAILLYSPEDI 339
|
Length = 590 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-16
Identities = 101/375 (26%), Positives = 160/375 (42%), Gaps = 49/375 (13%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
L + E K + TP QR AIP +++ +A TGSGKT A LP++ L
Sbjct: 7 ILDPRVREWF-KRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI---NEL 62
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIE----EETNKFGTPLGIRTVLVVGGLSREEQG 849
+ + + D G YA+ ++P + L I E + G + +R G + E+
Sbjct: 63 LSLGKGKLED-GIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRH----GDTPQSEKQ 117
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYL--VLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L+ I+I TP L +L + +L Y+++DE + + + VQ L
Sbjct: 118 KMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES--KRGVQLALSLE 175
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL---RRPATVY 964
+ L D Q + +AT+ P E +A+ +L P +
Sbjct: 176 RLRELAGDF--------------------QRIGLSATVGP-PEEVAK-FLVGFGDPCEIV 213
Query: 965 IGSVGKPTERIEQIV---YILSEQDKRKKLMEVLNRGVK--KPVIIFVNQKKGADVLAKG 1019
S K E I+ I ++ +++ L E + VK + +IF N + GA+ LA
Sbjct: 214 DVSAAKKLE-IKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFR 272
Query: 1020 LEKLGYNACTLHGGK-GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
L+KLG + +H G +E R LK G +VAT GIDI D+ +VI
Sbjct: 273 LKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSP 332
Query: 1079 KSIEDYTHRIGRTGR 1093
KS+ + RIGR G
Sbjct: 333 KSVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-16
Identities = 101/375 (26%), Positives = 160/375 (42%), Gaps = 49/375 (13%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
L + E K + TP QR AIP +++ +A TGSGKT A LP++ L
Sbjct: 7 ILDPRVREWF-KRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI---NEL 62
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIE----EETNKFGTPLGIRTVLVVGGLSREEQG 1524
+ + + D G YA+ ++P + L I E + G + +R G + E+
Sbjct: 63 LSLGKGKLED-GIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRH----GDTPQSEKQ 117
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYL--VLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L+ I+I TP L +L + +L Y+++DE + + + VQ L
Sbjct: 118 KMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES--KRGVQLALSLE 175
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL---RRPATVY 1639
+ L D Q + +AT+ P E +A+ +L P +
Sbjct: 176 RLRELAGDF--------------------QRIGLSATVGP-PEEVAK-FLVGFGDPCEIV 213
Query: 1640 IGSVGKPTERIEQIV---YILSEQDKRKKLMEVLNRGVK--KPVIIFVNQKKGADVLAKG 1694
S K E I+ I ++ +++ L E + VK + +IF N + GA+ LA
Sbjct: 214 DVSAAKKLE-IKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFR 272
Query: 1695 LEKLGYNACTLHGGK-GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
L+KLG + +H G +E R LK G +VAT GIDI D+ +VI
Sbjct: 273 LKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSP 332
Query: 1754 KSIEDYTHRIGRTGR 1768
KS+ + RIGR G
Sbjct: 333 KSVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 4e-16
Identities = 98/408 (24%), Positives = 158/408 (38%), Gaps = 88/408 (21%)
Query: 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803
G + P+Q + I L RD V TG GK+L + LP L I
Sbjct: 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC----SDGIT------ 54
Query: 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRLG-CEIV 859
++++P L +E++ + GI + S+E+Q L+ G +++
Sbjct: 55 -----LVISPLISL---MEDQVLQL-KASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLL 105
Query: 860 IATP------GRLIDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTN 911
TP RL+ LE R + T I +DEA + G F PD Y + +
Sbjct: 106 YVTPEKCSASNRLLQTLEERKGI----TLIAVDEAHCISQWGHDFRPD------YKALGS 155
Query: 912 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVYIGSVG 969
LK + + TAT P+V L + P ++ S
Sbjct: 156 LKQKFPNVP-----------------IMALTATASPSVREDILRQLNLKNP-QIFCTSFD 197
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-----PVIIFVNQKKGADVLAKGLEKLG 1024
+P + Y + K K++E L R ++K II+ +K ++ + L+ LG
Sbjct: 198 RP-----NLYYEVRR--KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG 250
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
A H G R+ + + ++VAT G GI+ DV VI+Y + KS+E Y
Sbjct: 251 IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESY 310
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYD------LKQMMISSPVTG 1126
GR GR G + HLFY L+++++ P
Sbjct: 311 YQESGRAGRDG---------LPSECHLFYAPADINRLRRLLMEEPDGQ 349
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-15
Identities = 98/406 (24%), Positives = 158/406 (38%), Gaps = 88/406 (21%)
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478
G + P+Q + I L RD V TG GK+L + LP L I
Sbjct: 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC----SDGIT------ 54
Query: 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRLG-CEIV 1534
++++P L +E++ + GI + S+E+Q L+ G +++
Sbjct: 55 -----LVISPLISL---MEDQVLQL-KASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLL 105
Query: 1535 IATP------GRLIDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTN 1586
TP RL+ LE R + T I +DEA + G F PD Y + +
Sbjct: 106 YVTPEKCSASNRLLQTLEERKGI----TLIAVDEAHCISQWGHDFRPD------YKALGS 155
Query: 1587 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVYIGSVG 1644
LK + + TAT P+V L + P ++ S
Sbjct: 156 LKQKFPNVP-----------------IMALTATASPSVREDILRQLNLKNP-QIFCTSFD 197
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-----PVIIFVNQKKGADVLAKGLEKLG 1699
+P + Y + K K++E L R ++K II+ +K ++ + L+ LG
Sbjct: 198 RP-----NLYYEVRR--KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG 250
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
A H G R+ + + ++VAT G GI+ DV VI+Y + KS+E Y
Sbjct: 251 IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESY 310
Query: 1760 THRIGRTGRAGKEGLAVSFCTKDDSHLFYD------LKQMMISSPV 1799
GR GR G + HLFY L+++++ P
Sbjct: 311 YQESGRAGRDG---------LPSECHLFYAPADINRLRRLLMEEPD 347
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 5e-15
Identities = 88/387 (22%), Positives = 148/387 (38%), Gaps = 74/387 (19%)
Query: 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL----VWIQSLPKIARMEDA 802
GY + P Q + I L RD++ V TG GK+L + +P L + + P I+ M
Sbjct: 10 GYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLM--K 67
Query: 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG----CEI 858
DQ Q+ G+ + LS +EQ + ++
Sbjct: 68 DQ-------------VDQLRA--------AGVAAAYLNSTLSAKEQQDIEKALVNGELKL 106
Query: 859 VIATPGRLIDVLENRYLVLNQCTYIVL---DEADRMIDMG--FEPDVQKILEYMPVTNLK 913
+ P RL ++ +L + Q I L DEA + G F P+ Q++ +
Sbjct: 107 LYVAPERL---EQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL---GSLAERF 160
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 973
P + TAT + R LR + +
Sbjct: 161 PQ--------------------VPRIALTATADAETRQDIRELLRLADANEFIT---SFD 197
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
R ++ + +K+K L++ L + + II+ + +K + LA+ LE G +A H G
Sbjct: 198 RPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAG 257
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
+ R ++VAT+ G GID +V VI+YDM ++E Y GR
Sbjct: 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ---EAGR 314
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQMMI 1120
AG++GL ++ L Y + +
Sbjct: 315 AGRDGL------PAEAILLYSPADIAL 335
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 5e-15
Identities = 88/387 (22%), Positives = 148/387 (38%), Gaps = 74/387 (19%)
Query: 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL----VWIQSLPKIARMEDA 1477
GY + P Q + I L RD++ V TG GK+L + +P L + + P I+ M
Sbjct: 10 GYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLM--K 67
Query: 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG----CEI 1533
DQ Q+ G+ + LS +EQ + ++
Sbjct: 68 DQ-------------VDQLRA--------AGVAAAYLNSTLSAKEQQDIEKALVNGELKL 106
Query: 1534 VIATPGRLIDVLENRYLVLNQCTYIVL---DEADRMIDMG--FEPDVQKILEYMPVTNLK 1588
+ P RL ++ +L + Q I L DEA + G F P+ Q++ +
Sbjct: 107 LYVAPERL---EQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL---GSLAERF 160
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 1648
P + TAT + R LR + +
Sbjct: 161 PQ--------------------VPRIALTATADAETRQDIRELLRLADANEFIT---SFD 197
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
R ++ + +K+K L++ L + + II+ + +K + LA+ LE G +A H G
Sbjct: 198 RPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAG 257
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
+ R ++VAT+ G GID +V VI+YDM ++E Y GR
Sbjct: 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ---EAGR 314
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQMMI 1795
AG++GL ++ L Y + +
Sbjct: 315 AGRDGL------PAEAILLYSPADIAL 335
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 8e-13
Identities = 45/96 (46%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHR 425
RSRSRSP R RR R R R DR RER +RSR R+RDR R R RS R R R R
Sbjct: 3 RSRSRSPRRSRR-RGRSRSRDR-RERRRERSRS---RERDRRRRSRSRSPHRSRRSRSPR 57
Query: 426 RDRSKERDGKDRREGYRRERREEEASGSKHKSRDKE 461
R RS+ R RR+ R+ R+++A K + R K
Sbjct: 58 RHRSRSRSPSRRRD--RKRERDKDAREPKKRERQKL 91
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 31/104 (29%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 366 RSRSRSPPRKR-RSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSRERER----- 419
R R R R R RS ER R R+R R R R R+R R R R R
Sbjct: 5 PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPR 64
Query: 420 --EKRHHRRDRSK-ERDGKDRREGYRRERREEEASGSKHKSRDK 460
RR R + R + R + RR + S S +D
Sbjct: 65 SLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDD 108
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 74/384 (19%), Positives = 127/384 (33%), Gaps = 66/384 (17%)
Query: 750 EPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805
E P Q +A+ R + V TG+GKT+ +
Sbjct: 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAA-----------EAIAE----LK 80
Query: 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 865
+++ PT+EL Q E KF + GG +E + + + +AT
Sbjct: 81 RSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY--GGGEKELEPAK------VTVAT--- 129
Query: 866 LIDVLENR----YLVLNQCTYIVLDEADRMIDMGFE------------------P---DV 900
+ L R + N+ I+ DE + + P D
Sbjct: 130 -VQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATPEREDG 188
Query: 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
+I + + + P + + + Y + KY + + T T E A+ R
Sbjct: 189 GRIGDLFDL--IGPIVYEVSLKELIDEGYLAPYKYVE-IKVTLTEDEEREY-AKESARFR 244
Query: 961 ATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKG 1019
+ + +I + + L+ RG +IF + + A +AK
Sbjct: 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARG--DKTLIFASDVEHAYEIAKL 302
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
G + G +E+RE L + G +LV V G+DI D ++I
Sbjct: 303 FLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG 361
Query: 1080 SIEDYTHRIGRTGRA--GKEGLAV 1101
S + R+GR R GKE
Sbjct: 362 SRRLFIQRLGRGLRPAEGKEDTLA 385
|
Length = 442 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 74/384 (19%), Positives = 127/384 (33%), Gaps = 66/384 (17%)
Query: 1425 EPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480
E P Q +A+ R + V TG+GKT+ +
Sbjct: 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAA-----------EAIAE----LK 80
Query: 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540
+++ PT+EL Q E KF + GG +E + + + +AT
Sbjct: 81 RSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY--GGGEKELEPAK------VTVAT--- 129
Query: 1541 LIDVLENR----YLVLNQCTYIVLDEADRMIDMGFE------------------P---DV 1575
+ L R + N+ I+ DE + + P D
Sbjct: 130 -VQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATPEREDG 188
Query: 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635
+I + + + P + + + Y + KY + + T T E A+ R
Sbjct: 189 GRIGDLFDL--IGPIVYEVSLKELIDEGYLAPYKYVE-IKVTLTEDEEREY-AKESARFR 244
Query: 1636 ATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKG 1694
+ + +I + + L+ RG +IF + + A +AK
Sbjct: 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARG--DKTLIFASDVEHAYEIAKL 302
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
G + G +E+RE L + G +LV V G+DI D ++I
Sbjct: 303 FLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG 361
Query: 1755 SIEDYTHRIGRTGRA--GKEGLAV 1776
S + R+GR R GKE
Sbjct: 362 SRRLFIQRLGRGLRPAEGKEDTLA 385
|
Length = 442 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (158), Expect = 3e-10
Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 24/298 (8%)
Query: 415 REREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDE 474
++ E K+ +++ D E + E + K + + E+ +DE
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
Query: 475 EEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTK---------EERAAEALRKRQAE 525
+ K KK+ L++ A KK +EA+ K + K E + A+ +K+ E
Sbjct: 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
Query: 526 ---VEEMRKKMEEERK-----------KRQEFTKEASFESKRENFDARLRRDREKKKEDP 571
EE +KK EE +K K+ + K+ + E+K++ +A+ + +KK ++
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
Query: 572 EEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERH 631
++ E K + +A + + KK ++ ++ K + +E+ + E
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Query: 632 QVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEK-EQEKVRLKKVKKREEKQK 688
+ + A +A+ + K Y E + + EA+K E+ K++ +++KK EE++K
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
Length = 2084 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 283 QIVYILSEQDKRKKLMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
+ + E +K + L+E+L +KK V+IF KK D LA+ L K G LHG
Sbjct: 3 KQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62
Query: 341 GQEQRELALNSLKGGSKDILMA 362
QE+RE L + G +L+A
Sbjct: 63 SQEEREEVLKDFREGEIVVLVA 84
|
Length = 131 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-09
Identities = 104/408 (25%), Positives = 163/408 (39%), Gaps = 94/408 (23%)
Query: 733 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 792
SL ++L+ E GY + P Q++ I L RD + V TG GK+L + +P LV +
Sbjct: 10 ESLAKQVLQ--ETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV-LDG 66
Query: 793 L-----PKIARMED-ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
L P I+ M+D DQ LA G+ + +RE
Sbjct: 67 LTLVVSPLISLMKDQVDQ-----------LLAN-------------GVAAACLNSTQTRE 102
Query: 847 EQGFRLRLGC-----EIVIATPGRLI--DVLENRYLVLNQCTYIVLDEADRMIDMG--FE 897
+Q + GC +++ P RL+ + LE+ L + +DEA + G F
Sbjct: 103 QQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEH--LAHWNPALLAVDEAHCISQWGHDFR 159
Query: 898 PD------VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951
P+ +++ +P L T A+D T V
Sbjct: 160 PEYAALGQLRQRFPTLPFMAL---TATADD---------------------TTRQDIVRL 195
Query: 952 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK-RKKLMEVLNRGVKKPVIIFVNQK 1010
L L P + I S +P I Y L E+ K +LM + K II+ N +
Sbjct: 196 LG---LNDP-LIQISSFDRP-----NIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSR 246
Query: 1011 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070
+ A L+ G +A H G + R + + I+VAT G GI+ +V
Sbjct: 247 AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306
Query: 1071 MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
V+++D+ ++IE Y TGRAG++GL ++ LFYD M
Sbjct: 307 FVVHFDIPRNIESYYQ---ETGRAGRDGLPA------EAMLFYDPADM 345
|
Length = 607 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-09
Identities = 104/408 (25%), Positives = 163/408 (39%), Gaps = 94/408 (23%)
Query: 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 1467
SL ++L+ E GY + P Q++ I L RD + V TG GK+L + +P LV +
Sbjct: 10 ESLAKQVLQ--ETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV-LDG 66
Query: 1468 L-----PKIARMED-ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
L P I+ M+D DQ LA G+ + +RE
Sbjct: 67 LTLVVSPLISLMKDQVDQ-----------LLAN-------------GVAAACLNSTQTRE 102
Query: 1522 EQGFRLRLGC-----EIVIATPGRLI--DVLENRYLVLNQCTYIVLDEADRMIDMG--FE 1572
+Q + GC +++ P RL+ + LE+ L + +DEA + G F
Sbjct: 103 QQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEH--LAHWNPALLAVDEAHCISQWGHDFR 159
Query: 1573 PD------VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 1626
P+ +++ +P L T A+D T V
Sbjct: 160 PEYAALGQLRQRFPTLPFMAL---TATADD---------------------TTRQDIVRL 195
Query: 1627 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK-RKKLMEVLNRGVKKPVIIFVNQK 1685
L L P + I S +P I Y L E+ K +LM + K II+ N +
Sbjct: 196 LG---LNDP-LIQISSFDRP-----NIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSR 246
Query: 1686 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745
+ A L+ G +A H G + R + + I+VAT G GI+ +V
Sbjct: 247 AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306
Query: 1746 MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
V+++D+ ++IE Y TGRAG++GL ++ LFYD M
Sbjct: 307 FVVHFDIPRNIESYYQ---ETGRAGRDGLPA------EAMLFYDPADM 345
|
Length = 607 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 4e-09
Identities = 44/219 (20%), Positives = 94/219 (42%), Gaps = 12/219 (5%)
Query: 377 RSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKD 436
+ + D ++ + + D+ + ++ + + + E ++ ++ ++ +D
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Query: 437 RREGYRR----ERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEEL 492
+ R+ ++ EE K ++E E+ ++E + K KK +++
Sbjct: 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
Query: 493 LAKKKAEEEARSKPKFLTKEE-----RAAEALRKRQAE---VEEMRKKMEEERKKRQEFT 544
KK E E + K + L K E +AAE +K + + EE +K E+E+K +
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Query: 545 KEASFESKRENFDARLRRDREKKKEDPEEKELNKDKERE 583
KEA K E + +++K +E + +E NK K E
Sbjct: 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 4e-09
Identities = 62/322 (19%), Positives = 139/322 (43%), Gaps = 13/322 (4%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
D+ R +++ + + + + + + + +++ + ++ E EK+
Sbjct: 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
Query: 424 HRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAK 483
+ + KE + K + E ++ E + ++ + +E + E+ ++E+E K A A
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
Query: 484 K----EPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKK 539
K E EEL KKK EE + + EE + + E EE +KK EE +K
Sbjct: 1695 KKEAEEAKKAEEL--KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
Query: 540 RQEFTKEASFESKRENFDARLRRDRE---KKKEDPEEKELNKDKEREGEAIKERYLGLVK 596
+E K A + + E +R+++E +++ D E+++ + +++ + I + + +++
Sbjct: 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
Query: 597 -KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQ--FFGRGNIAGIDIKAQKRDQ 653
K +ND K + D A ++ + N +E + F + N G D +
Sbjct: 1813 GGKEGNLVINDSKEMED-SAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFN 1871
Query: 654 SKFYGEMLEKRRTEAEKEQEKV 675
+ + ++ E E EK+
Sbjct: 1872 KEKDLKEDDEEEIEEADEIEKI 1893
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 4e-09
Identities = 73/392 (18%), Positives = 161/392 (41%), Gaps = 67/392 (17%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
K+++ ++ D ++ + + D + + + + + E +K + +++
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKK--EPLSLEEL 492
+ ++ ++ EE K K+ + + E + M + EE K A + E + L E
Sbjct: 1549 DELKKAEELKKAEE-----KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
Query: 493 LAKKKAE-----EEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEA 547
K KAE EEA+ K + L K E + + + + + E +KK EE +K +E +A
Sbjct: 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
Query: 548 SFESKRENFDAR----LRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRR 603
+ E+K+ D + ++ E +K+ E + ++ ++ E +K++ KK +++
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Query: 604 LNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEK 663
+ K +++K E +K
Sbjct: 1724 AEE---------------------------------------ENKIKAEEAKKEAEEDKK 1744
Query: 664 RRTEAEK-EQEKVRLKKVKKREEKQKWDDRHWTEKSLDE-----------MTERDWRIFR 711
+ EA+K E+EK ++ +KK EEK+ + R E ++E ++ +
Sbjct: 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEII 743
++++ I+GGK + V N + + I E+
Sbjct: 1805 DNFANIIEGGKEGNLVINDSKEMEDSAIKEVA 1836
|
Length = 2084 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 8e-09
Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHR 425
R R R + R R+ R D+ RER RS R RDR R RDR R R
Sbjct: 1 RYRDRE---RGRLRNDTRRSDKGRERSRRRS-----RSRDRSRRRRDRDYYRGRR----G 48
Query: 426 RDRSKERDGKDRREGYRRERREEEASGSK 454
R RS+ + R G R RR++ SG
Sbjct: 49 RSRSRSPNRYYRPRGDRSYRRDDRRSGRN 77
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
RR RSRS R+ R R R R R+ DR R R R R R R R R R +
Sbjct: 14 RRGRSRSRDRRERRRERSRS------RERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPS 67
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
RR K KD RE +RER++ D+E
Sbjct: 68 RRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEV 105
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 988 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG---------QEQ 1038
R+ L E L + VI+F + A+ + L+K+G A G+ Q++
Sbjct: 354 REILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKE 413
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
++ ++ + G ++LVAT V G+DI +V +VI Y+ S R GRTGR ++G
Sbjct: 414 QKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKG 472
Query: 1099 LAVSFCTKDDS 1109
V T+
Sbjct: 473 RVVVLVTEGTR 483
|
Length = 542 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 1663 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG---------QEQ 1713
R+ L E L + VI+F + A+ + L+K+G A G+ Q++
Sbjct: 354 REILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKE 413
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773
++ ++ + G ++LVAT V G+DI +V +VI Y+ S R GRTGR ++G
Sbjct: 414 QKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKG 472
Query: 1774 LAVSFCTKDDS 1784
V T+
Sbjct: 473 RVVVLVTEGTR 483
|
Length = 542 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (144), Expect = 2e-08
Identities = 54/263 (20%), Positives = 117/263 (44%), Gaps = 27/263 (10%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSRERER----- 419
+++ + + ++ D +++ + + +++ + + + E D++ +
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Query: 420 ---EKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEE 476
E R + E + K + E ++ EE ++ + +E + EQ+ + EE
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Query: 477 DKGAAAKK---EPLSLEELLAKKKAEEEARSKPKFLTKEE---RAAEALRKRQAE---VE 527
K A K E ++ KKAEE+ + + EE +AAEAL+K E E
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Query: 528 EMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAI 587
E++KK EE+KK +E K E + +++ + KK+ + ++K+ + K+ E E
Sbjct: 1706 ELKKKEAEEKKKAEELKKA---EEEN-----KIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Query: 588 KERYLGLVKKKRRVRRLNDRKFV 610
K +L ++K+ +++ V
Sbjct: 1758 KIAHLKKEEEKKAEEIRKEKEAV 1780
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 4e-08
Identities = 73/359 (20%), Positives = 145/359 (40%), Gaps = 65/359 (18%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
+ +R +R++ + D + ++ + + + + E +R+ E R+
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
Query: 425 RRDRSKERDGKDRREGYRR---------ERREEEASGSKHKSRDKEGYEPTEQMVISDEE 475
R R + E R+ +++ +EA ++ K + E + E+ +DE
Sbjct: 1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
Query: 476 EDKGAAAKKEPLSL----EELLAK---KKAEEEARSK------------PKFLTKEERAA 516
+ K AKK+ + EE KAE EA + K + ++ A
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
Query: 517 EALRKRQAEV---EEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEE 573
+A +K+ E +E +KK EE++KK E K A+ + K + ++ E+KK+ E
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD----EAKKKAEEKKKADEA 1436
Query: 574 KELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQV 633
K+ ++ ++ EA K+ ++ ++ + A E D E
Sbjct: 1437 KKKAEEAKKADEAKKK-----AEEAKKAEEAKKK-------AEEAKKADEAKKKAE---- 1480
Query: 634 QFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEK-EQEKVRLKKVKKREEKQKWDD 691
+A+K D++K E +K+ EA+K + K + + KK EE +K D+
Sbjct: 1481 -------------EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
|
Length = 2084 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-08
Identities = 24/101 (23%), Positives = 35/101 (34%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
A +R R+RR +R + R R R D R R++ RE
Sbjct: 160 AAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERG 219
Query: 422 RHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
R DR R +DRR+ + RE+ + G
Sbjct: 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
Length = 672 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 26/63 (41%), Positives = 31/63 (49%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
R R R+R R + R R RD DR+R DRDRDR +R RSR R R +
Sbjct: 35 RGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYDRSRSRSRSRSRDR 94
Query: 424 HRR 426
RR
Sbjct: 95 RRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-08
Identities = 85/380 (22%), Positives = 140/380 (36%), Gaps = 71/380 (18%)
Query: 755 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP--YAIIMA 812
Q A+ + + R+++ TGSGKT +FLLP+L + + P A+++
Sbjct: 75 QVDALRLIREGRNVVVTTGTGSGKTESFLLPIL------------DHLLRDPSARALLLY 122
Query: 813 PTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
PT LA E + P + G EE+ +R +I++ P D+L
Sbjct: 123 PTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP----DML 178
Query: 871 E-------NRYLVL-NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 922
+ +L L Y+V+DE +V + + L
Sbjct: 179 HYLLLRNHDAWLWLLRNLKYLVVDEL-HTYRGVQGSEV-----ALLLRRLL--------- 223
Query: 923 NKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-- 980
+ L Y S + T +AT+ E A R V + G P +
Sbjct: 224 -RRLRRYGSPLQIICT---SATLANPGE-FAEELFGRDFEVPVDEDGSPRGLRYFVRREP 278
Query: 981 ---ILSEQDKRKKLMEV-------LNRGVKKPVIIFVNQKKGADVLAKGL--------EK 1022
L+E +R L E+ + G++ ++F +K ++L K
Sbjct: 279 PIRELAESIRRSALAELATLAALLVRNGIQ--TLVFFRSRKQVELLYLSPRRRLVREGGK 336
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-AKSI 1081
L T G +E+R K G ++AT+ GIDI + VI Y S+
Sbjct: 337 LLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSV 396
Query: 1082 EDYTHRIGRTGRAGKEGLAV 1101
+ R GR GR G+E L +
Sbjct: 397 LSFRQRAGRAGRRGQESLVL 416
|
Length = 851 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-08
Identities = 85/380 (22%), Positives = 140/380 (36%), Gaps = 71/380 (18%)
Query: 1430 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP--YAIIMA 1487
Q A+ + + R+++ TGSGKT +FLLP+L + + P A+++
Sbjct: 75 QVDALRLIREGRNVVVTTGTGSGKTESFLLPIL------------DHLLRDPSARALLLY 122
Query: 1488 PTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
PT LA E + P + G EE+ +R +I++ P D+L
Sbjct: 123 PTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP----DML 178
Query: 1546 E-------NRYLVL-NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 1597
+ +L L Y+V+DE +V + + L
Sbjct: 179 HYLLLRNHDAWLWLLRNLKYLVVDEL-HTYRGVQGSEV-----ALLLRRLL--------- 223
Query: 1598 NKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-- 1655
+ L Y S + T +AT+ E A R V + G P +
Sbjct: 224 -RRLRRYGSPLQIICT---SATLANPGE-FAEELFGRDFEVPVDEDGSPRGLRYFVRREP 278
Query: 1656 ---ILSEQDKRKKLMEV-------LNRGVKKPVIIFVNQKKGADVLAKGL--------EK 1697
L+E +R L E+ + G++ ++F +K ++L K
Sbjct: 279 PIRELAESIRRSALAELATLAALLVRNGIQ--TLVFFRSRKQVELLYLSPRRRLVREGGK 336
Query: 1698 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-AKSI 1756
L T G +E+R K G ++AT+ GIDI + VI Y S+
Sbjct: 337 LLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSV 396
Query: 1757 EDYTHRIGRTGRAGKEGLAV 1776
+ R GR GR G+E L +
Sbjct: 397 LSFRQRAGRAGRRGQESLVL 416
|
Length = 851 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-08
Identities = 38/103 (36%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
RRSR RS R R RSRER Y R R DR R D R RSR+R R
Sbjct: 26 RRSRDRSRFRDRHRRSRERSY-REDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPR----- 79
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSKHKS---RDKEGYE 464
RR RS + RR R + K +S GYE
Sbjct: 80 RRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPGYE 122
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-08
Identities = 28/101 (27%), Positives = 36/101 (35%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
+ R R R + R R +R RD RDR R + DR ER R
Sbjct: 163 RTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRD 222
Query: 422 RHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
RR R + RD +D R RE R + + G
Sbjct: 223 GGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
|
Length = 672 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
+ R ++ + R R R R R R R R R RDRDR R R+R+R R
Sbjct: 24 EIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYDRS 83
Query: 424 HRRDRSKERDGKDR 437
R RS+ RD + R
Sbjct: 84 RSRSRSRSRDRRRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-07
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 720 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAI-PIGLQNRDIIGVAETGSGK 778
+ + + L +LEI++ G E Q++A+ L + +++ A TGSGK
Sbjct: 1 EIFMKEEKLATSKVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGK 60
Query: 779 TLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 838
TL LL + G + + P + LA++ EE ++ LGIR +
Sbjct: 61 TLIALL-----------AILSTLLEGGGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGI 108
Query: 839 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G +++ ++++ TP +L + R + + +V+DE
Sbjct: 109 STGDYDLDDERL---ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEI 155
|
Length = 766 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-07
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 1395 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAI-PIGLQNRDIIGVAETGSGK 1453
+ + + L +LEI++ G E Q++A+ L + +++ A TGSGK
Sbjct: 1 EIFMKEEKLATSKVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGK 60
Query: 1454 TLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 1513
TL LL + G + + P + LA++ EE ++ LGIR +
Sbjct: 61 TLIALL-----------AILSTLLEGGGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGI 108
Query: 1514 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G +++ ++++ TP +L + R + + +V+DE
Sbjct: 109 STGDYDLDDERL---ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEI 155
|
Length = 766 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-07
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 973 ERIEQIVYILSEQD----KRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLG 1024
R + V E D K +KL E++ + K +I+F + A+ + LEK G
Sbjct: 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG 389
Query: 1025 YNA------CTLHGGKGQEQRE--LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD 1076
A + G KG Q+E L+ + G ++LV+T VA G+DI V +VI Y+
Sbjct: 390 IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYE 449
Query: 1077 MA----KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
+SI+ R GRTGR +EG V K
Sbjct: 450 PVPSEIRSIQ----RKGRTGR-QEEGRVVVLIAKG 479
|
Length = 773 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-07
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 1648 ERIEQIVYILSEQD----KRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLG 1699
R + V E D K +KL E++ + K +I+F + A+ + LEK G
Sbjct: 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG 389
Query: 1700 YNA------CTLHGGKGQEQRE--LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD 1751
A + G KG Q+E L+ + G ++LV+T VA G+DI V +VI Y+
Sbjct: 390 IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYE 449
Query: 1752 MA----KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782
+SI+ R GRTGR +EG V K
Sbjct: 450 PVPSEIRSIQ----RKGRTGR-QEEGRVVVLIAKG 479
|
Length = 773 |
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 3e-07
Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 9/139 (6%)
Query: 381 RERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREG 440
R+ + DR RE+ R RD R +R R R R R R R++ R+RS D + R
Sbjct: 1 RDEEPDREREKSRGRDRD-RSSERPRRR---SRDRSRFRDRHRRSRERSYREDSRPRDRR 56
Query: 441 YRRERREEEASGSKH-KSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAE 499
R S +SRD+ + E+ + + P S + KK
Sbjct: 57 RYDSRSPRSLRYSSVRRSRDR---PRRRSRSVRSIEQHRRRLRDRSP-SNQWRKDDKKRS 112
Query: 500 EEARSKPKFLTKEERAAEA 518
P + A+A
Sbjct: 113 LWDIKPPGYELVTADQAKA 131
|
These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-07
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSR---ERE 418
R + + R R R R+ + +R R +R RD +RDR + +
Sbjct: 154 TEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGD 213
Query: 419 REKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
R + RRD R + RR+ + D EG
Sbjct: 214 RREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEG 257
|
Length = 672 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-07
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
G R R R + R RE+ R D D RGR R RDR + RE
Sbjct: 190 RGRREERGRDGDDRDRRDRREQGDRREERGRRDG-GDRRGRRRRRDRRDARGDDNREDRG 248
Query: 422 RHHRRDRSKERDGKDRREGYRRERREEEASG 452
D + RR R R G
Sbjct: 249 DRDGDDGEGRGGRRGRRFRDRDRRGRRGGDG 279
|
Length = 672 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-07
Identities = 30/115 (26%), Positives = 43/115 (37%)
Query: 339 GKGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRD 398
G+G EQ + + +RR R R+ + ER R RD D
Sbjct: 146 GEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR 205
Query: 399 DRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGS 453
R++ R ER R +R R RRDR R +R + R+ + E G
Sbjct: 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
|
Length = 672 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-07
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 4 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 63
K + TP QR AIP +++ +A TGSGKT A LP++ L + + + D
Sbjct: 17 KRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVI---NELLSLGKGKLED- 72
Query: 64 GPYAIIMAPTRELAQQIE----EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
G YA+ ++P + L I E + G + +R G + E+ L+ I+I
Sbjct: 73 GIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRH----GDTPQSEKQKMLKNPPHILI 128
Query: 120 ATPGRLIDVLENRYL--VLNQCTYIVLDEADRMID 152
TP L +L + +L Y+++DE + +
Sbjct: 129 TTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163
|
Length = 814 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (131), Expect = 6e-07
Identities = 64/329 (19%), Positives = 141/329 (42%), Gaps = 20/329 (6%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
+++ ++ + ++ + + + + + D + + + +++ + K+ + K +
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA 494
K E ++ ++A +K K+ E + EE K A K+ L++
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 495 KKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRE 554
KKKAEE +++ +A EA + +A +EE+ K EEE+K + E K+A E +
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA--EEAKI 1620
Query: 555 NFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLND--RKFVFD 612
+ + + EKKK + +K+ ++K++ E K +K ++ + +K
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Query: 613 WDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQ 672
A ED ++ KE + A+K ++ K EK++ E K+
Sbjct: 1681 KKAEEDEKKAAEALKKEAEE---------------AKKAEELKKKEAE-EKKKAEELKKA 1724
Query: 673 EKVRLKKVKKREEKQKWDDRHWTEKSLDE 701
E+ K ++ +++ + D + E DE
Sbjct: 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
Length = 2084 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 6e-07
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
A +RR R + R ++ E E D + +RD R DR + +
Sbjct: 127 ARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAE 186
Query: 422 RHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGY 463
R R R E G+D + RR+RRE+ + RD
Sbjct: 187 RGERGRR--EERGRDGDDRDRRDRREQGDRREERGRRDGGDR 226
|
Length = 672 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 6e-07
Identities = 62/344 (18%), Positives = 127/344 (36%), Gaps = 31/344 (9%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
KR+ + R + E + D +L+ + E + + + +E
Sbjct: 169 KRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLL 228
Query: 435 KDRREGYRRERR---------EEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKE 485
ER E+E S + +KE + + + EEE + ++E
Sbjct: 229 YLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK 545
L + + K+E L K ER ++ E E+ KK+E+E KK +E
Sbjct: 289 LKLLAKEEEELKSE---------LLKLERRKVDDEEKLKESEKELKKLEKELKKEKEE-- 337
Query: 546 EASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLN 605
E ++E + ++R+ E+++E+ EK K ++ E E + ++ L + +
Sbjct: 338 --IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 395
Query: 606 DRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 665
+ + + + E + S +E + + ++ + E + +
Sbjct: 396 EELELKNEEEKEAKLLLELSEQEEDL--------LKEEKKEELKIVEELEESLETKQGKL 447
Query: 666 TEAEKEQEKVRLKKVKKR-EEKQKWDDRHWTEKSLDEMTERDWR 708
TE ++E EK LK +K + E K+ D T+
Sbjct: 448 TEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLL 491
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (129), Expect = 9e-07
Identities = 67/350 (19%), Positives = 140/350 (40%), Gaps = 45/350 (12%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
R++ + R + + R+ + R ++ + D + E R E R+
Sbjct: 1134 RKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEEL 1193
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKK 484
R+ + R+ ER+ EEA ++ + + + E D EE K A ++
Sbjct: 1194 RKAEDARKAEAARK--AEEERKAEEARKAEDAKKAEAVKKAEE--AKKDAEEAKKAEEER 1249
Query: 485 EPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRK----------RQAE----VEEMR 530
+ + + A AR + +E R A+ L+K ++AE +E +
Sbjct: 1250 NNEEIRKFEEARMAHF-ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308
Query: 531 KKMEEER-----KKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKER--- 582
KK EE + KK+ E K+ + +K++ +A+ + K + + E +E+
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
Query: 583 ---EGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRG 639
+ E K++ KK ++ ++ K + D + + + K++
Sbjct: 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD------- 1421
Query: 640 NIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQE-KVRLKKVKKREEKQK 688
+A+K+ + K + +K+ EA+K E K + ++ KK EE +K
Sbjct: 1422 -------EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
Length = 2084 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-06
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSR 397
+ +E+RE + +G ++ G++ + R+ ERD ER R
Sbjct: 124 AAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERD-----ERRRRGDR 178
Query: 398 DDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKS 457
+DR + +R R R R+ + R R R + ++R +RR + +
Sbjct: 179 EDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDA 238
Query: 458 RDKEGYEPTEQMVISDEEEDKG 479
R + E D E G
Sbjct: 239 RGDDNREDRGDRDGDDGEGRGG 260
|
Length = 672 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-06
Identities = 82/357 (22%), Positives = 137/357 (38%), Gaps = 72/357 (20%)
Query: 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824
NR + G + GSGKTL L +L I++ G +MAPT LA+Q
Sbjct: 258 NRLLQG--DVGSGKTLVAALAMLAAIEA------------GYQVALMAPTEILAEQHYNS 303
Query: 825 TNKFGTPLGIRTVLVVGGL---SREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQC 880
PLGI L+ G L R+E + G +V+ T + + +E +
Sbjct: 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE-----FKRL 358
Query: 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940
+++DE R G E + K L ++
Sbjct: 359 ALVIIDEQHR---FGVE------------------------QRKKLREKGQGGFTPHVLV 391
Query: 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK 1000
+AT P LA + T I + + I ++ + D++ + E + +
Sbjct: 392 MSAT--PIPRTLALTVYGDLDTSIIDELPPGRKPITTVLI---KHDEKDIVYEFIEEEIA 446
Query: 1001 K--------PVI--IFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSLKG 1048
K P+I K A+ L + L+K YN LHG +++E + +
Sbjct: 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE 506
Query: 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI-GRTGRAGKEGLAVSFC 1104
G DILVAT V G+D+ + ++++ D + H++ GR GR + S+C
Sbjct: 507 GEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQ----SYC 559
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-06
Identities = 82/357 (22%), Positives = 137/357 (38%), Gaps = 72/357 (20%)
Query: 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499
NR + G + GSGKTL L +L I++ G +MAPT LA+Q
Sbjct: 258 NRLLQG--DVGSGKTLVAALAMLAAIEA------------GYQVALMAPTEILAEQHYNS 303
Query: 1500 TNKFGTPLGIRTVLVVGGL---SREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQC 1555
PLGI L+ G L R+E + G +V+ T + + +E +
Sbjct: 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE-----FKRL 358
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 1615
+++DE R G E + K L ++
Sbjct: 359 ALVIIDEQHR---FGVE------------------------QRKKLREKGQGGFTPHVLV 391
Query: 1616 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK 1675
+AT P LA + T I + + I ++ + D++ + E + +
Sbjct: 392 MSAT--PIPRTLALTVYGDLDTSIIDELPPGRKPITTVLI---KHDEKDIVYEFIEEEIA 446
Query: 1676 K--------PVI--IFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSLKG 1723
K P+I K A+ L + L+K YN LHG +++E + +
Sbjct: 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE 506
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI-GRTGRAGKEGLAVSFC 1779
G DILVAT V G+D+ + ++++ D + H++ GR GR + S+C
Sbjct: 507 GEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQ----SYC 559
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-06
Identities = 98/468 (20%), Positives = 162/468 (34%), Gaps = 96/468 (20%)
Query: 1383 RIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD 1442
RE ++ + R E E E +K P QR ++ +
Sbjct: 47 NALRERKTL----KNLEFFRRYLWEYE---EFEEFFKKATGFRPWSAQRVWAKRLVRGKS 99
Query: 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502
+A TG GKT F L + +++ A +G I+ PT L +Q+ E K
Sbjct: 100 FAIIAPTGVGKT-TFGLLMSLYL-----------AKKGKRVYIIVPTTTLVRQVYERLKK 147
Query: 1503 FGTPLGIRTVLVV--GGLS-REEQGFRLRL---GCEIVIATPGRLIDVLENRYLVLNQCT 1556
F G VLVV L +E++ R+ +I+I T L E L +
Sbjct: 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFD 205
Query: 1557 YIVLDEAD------RMID-----MGFEPDV---QKILEYMPVTNLKPDTEDAEDENKLLA 1602
+I +D+ D + +D +GF +V L + L + + AE + L
Sbjct: 206 FIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKL-RRKLYGE-KRAERVREELR 263
Query: 1603 -----NYNSKKKYRQTVMFTATMPPAVERLA-------------RSYLRRPATVYIGSVG 1644
++K V+ +AT P RL LR +Y+
Sbjct: 264 EVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYV---- 319
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADV---LAKGLEKLGYN 1701
+E +E++V ++ + L G +IFV G + LA+ L G N
Sbjct: 320 -ESESLEKVVELVKK----------LGDG----GLIFVPIDYGREKAEELAEYLRSHGIN 364
Query: 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDI-KDVSMVINYDMAK-- 1754
A +H K E AL + G D+LV V RG+D+ + + Y + K
Sbjct: 365 AELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419
Query: 1755 -SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVST 1801
+ R ++ + + + SP S
Sbjct: 420 FRLTLEESDPKRLLYLLSALSDREARSRLEGLAGRLRRIIRRLSPYSL 467
|
Length = 1187 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 2e-06
Identities = 60/330 (18%), Positives = 134/330 (40%), Gaps = 16/330 (4%)
Query: 374 RKRRSRSRERDYDRVRE-RDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKER 432
+ ++ D+D + R + + + G+ + + E ++ E + + ++ +
Sbjct: 1070 EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARK 1129
Query: 433 DGKDRR-EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEE 491
+ R+ E R+ +A +K ++ + + E+ K A A ++ + +
Sbjct: 1130 AEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRK 1189
Query: 492 LLAKKKAEEEARSKPKFLTKEERAAEALRKRQAE--------VEEMRKKMEEERKKRQEF 543
+KAE+ +++ +EER AE RK + EE +K EE +K +E
Sbjct: 1190 AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEER 1249
Query: 544 TKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRR 603
E + + RR K E+ + + K E + +A + + KK ++
Sbjct: 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK 1309
Query: 604 LNDRKFVFDW--DASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 661
+ D +E+ ++ K+ + + A + A + + ++ E
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
Query: 662 EKRRTEAEKEQEKVRLKKVKKREEKQKWDD 691
EK++ EA+K+ + + KK EEK+K D+
Sbjct: 1370 EKKKEEAKKKADAAK----KKAEEKKKADE 1395
|
Length = 2084 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRS---REREREKR 422
R R+ + R + RER R R RD R R DR R R R RS R R R
Sbjct: 9 RLRNDTR---RSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDR 65
Query: 423 HHRR-DRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYE 464
+RR DR R+ K+ R+ R K+R+++ YE
Sbjct: 66 SYRRDDRRSGRNTKEPLTEAERDDRTVFVLQLALKARERDLYE 108
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 353 KGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
D R R R RR R R R+R R D+R DRD + +
Sbjct: 197 GRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGE 256
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEE 449
R R +R RDR + R G D E RE++
Sbjct: 257 GRGGR-RGRRFRDRDR-RGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVR----ERDTDRSRDDRGRDRDRDRLERDRSRER 417
R R+ R R + R R +R +R R D G R R R R
Sbjct: 181 RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG 240
Query: 418 EREKRHHRRDRSKERDGKDRREGYRRERREE 448
+ + + +G+ R G R R+
Sbjct: 241 DDNREDRGDRDGDDGEGRGGRRGRRFRDRDR 271
|
Length = 672 |
| >gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-06
Identities = 92/403 (22%), Positives = 146/403 (36%), Gaps = 92/403 (22%)
Query: 708 RIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD 767
RE ++ + R E E E +K P QR ++ +
Sbjct: 47 NALRERKTL----KNLEFFRRYLWEYE---EFEEFFKKATGFRPWSAQRVWAKRLVRGKS 99
Query: 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827
+A TG GKT F L + +++ A +G I+ PT L +Q+ E K
Sbjct: 100 FAIIAPTGVGKT-TFGLLMSLYL-----------AKKGKRVYIIVPTTTLVRQVYERLKK 147
Query: 828 FGTPLGIRTVLVV--GGLS-REEQGFRLRL---GCEIVIATPGRLIDVLENRYLVLNQCT 881
F G VLVV L +E++ R+ +I+I T L E L +
Sbjct: 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFD 205
Query: 882 YIVLDEAD------RMID-----MGFEPDV---QKILEYMPVTNLKPDTEDAEDENKLLA 927
+I +D+ D + +D +GF +V L + L + + AE + L
Sbjct: 206 FIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKL-RRKLYGE-KRAERVREELR 263
Query: 928 -----NYNSKKKYRQTVMFTATMPPAVERLA-------------RSYLRRPATVYIGSVG 969
++K V+ +AT P RL LR +Y+
Sbjct: 264 EVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYV---- 319
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADV---LAKGLEKLGYN 1026
+E +E++V ++ + L G +IFV G + LA+ L G N
Sbjct: 320 -ESESLEKVVELVKK----------LGDG----GLIFVPIDYGREKAEELAEYLRSHGIN 364
Query: 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGID 1065
A +H K E AL + G D+LV V RG+D
Sbjct: 365 AELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLD 402
|
Length = 1187 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-06
Identities = 56/304 (18%), Positives = 114/304 (37%), Gaps = 38/304 (12%)
Query: 406 RDRLERDRSREREREKRHHRRDRS---KERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
E +EK R + ++ + E E + + E
Sbjct: 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE- 275
Query: 463 YEPTEQMVISDEEEDKGAAAKKEPLSLEELLAK-KKAEEEARSKPKFLTKEERAAEA-LR 520
E ++ I D E++ K++ LE +A +++ E + + + EA +
Sbjct: 276 -ELNKK--IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
Query: 521 KRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDK 580
K AE+EE+ +++EEERK+R + T+E + +E + E KE E ++ KD
Sbjct: 333 KLLAEIEELEREIEEERKRRDKLTEE--YAELKEELEDLRAELEEVDKEFAETRDELKDY 390
Query: 581 EREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGN 640
+ E +K L KR + RL + + +
Sbjct: 391 REKLEKLKREINEL---KRELDRLQEEL-------------------QRLSEELADLNAA 428
Query: 641 IAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLD 700
IAGI + ++ E +K ++E + +L + E++ +D + ++
Sbjct: 429 IAGI-----EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
Query: 701 EMTE 704
E+++
Sbjct: 484 ELSK 487
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-06
Identities = 26/112 (23%), Positives = 39/112 (34%)
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSR 397
G ++++ A +G ++ GD R R + R R R R R
Sbjct: 175 RGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRD 234
Query: 398 DDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEE 449
R D DR + + R R ++RD + RR G RE E
Sbjct: 235 RRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPE 286
|
Length = 672 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 4e-06
Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 12/264 (4%)
Query: 442 RRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEE 501
RR EEEA+GS+ K + KE + + + E K + AKK E
Sbjct: 155 RRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYY 214
Query: 502 ARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLR 561
+ L +E K E ++ +++ + ++ E + + E + E L+
Sbjct: 215 QLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIE-SSKQELEKEEEILAQVLK 273
Query: 562 RDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSV 621
++E++KE ++E K +E +E L+K +RR ++ SE
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKE---EEELKSELLKLERRKVDDEEKL-----KESEKELK 325
Query: 622 DYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVK 681
K+ + + ++IK + ++ + E LEK + + E+ +E++ KK
Sbjct: 326 KLEKELKKEKEEIEELEKELKELEIKREAEEEEE---EQLEKLQEKLEQLEEELLAKKKL 382
Query: 682 KREEKQKWDDRHWTEKSLDEMTER 705
+ E E L E+
Sbjct: 383 ESERLSSAAKLKEEELELKNEEEK 406
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 5e-06
Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 366 RSRSRSPPRKR-----RSRSRERDYDRV-RERDTDRSRDDRGRDRDRDRLERDRSRERER 419
R R R+ R+ RSR R R DR R RD D R RGR R R R R
Sbjct: 7 RGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRS 66
Query: 420 EKRHHRRDRSK-----ERDGKDRR 438
+R RR +D R
Sbjct: 67 YRRDDRRSGRNTKEPLTEAERDDR 90
|
This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457 |
| >gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-06
Identities = 88/369 (23%), Positives = 146/369 (39%), Gaps = 87/369 (23%)
Query: 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803
+K G +P +QR L +A TG GKT F L + +++ A
Sbjct: 75 KKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKT-TFGLVMSLYL-----------AK 121
Query: 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV---GGLSREEQGFRLRL---GCE 857
+G + I+ PTR L +Q+ E+ KFG +G ++ +E++ F RL +
Sbjct: 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFD 181
Query: 858 IVIATPGRLI---DVLENRYLVLNQCTYIVLDEAD------RMID-----MGF-EPDVQK 902
I++ T L D L + ++ +D+ D + ID +GF E D++K
Sbjct: 182 ILVTTSQFLSKNFDELPKKKF-----DFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEK 236
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM--FTATMPPAVERL-------- 952
+E + LK E+ ++ + L ++ K ++ V+ +AT P R+
Sbjct: 237 AMELI---RLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG 293
Query: 953 -----ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 1007
YLR YI + +E++V ++ L G +IFV
Sbjct: 294 FEVGSPVFYLRNIVDSYI----VDEDSVEKLVELVKR----------LGDG----GLIFV 335
Query: 1008 NQKKGADV---LAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA----TDVA 1060
KG + LA+ LE LG NA E + G D+LV V
Sbjct: 336 PSDKGKEYAEELAEYLEDLGINAELAI-----SGFERKFEKFEEGEVDVLVGVASYYGVL 390
Query: 1061 GRGIDIKDV 1069
RGID+ +
Sbjct: 391 VRGIDLPER 399
|
Length = 1176 |
| >gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-06
Identities = 88/369 (23%), Positives = 146/369 (39%), Gaps = 87/369 (23%)
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478
+K G +P +QR L +A TG GKT F L + +++ A
Sbjct: 75 KKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKT-TFGLVMSLYL-----------AK 121
Query: 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV---GGLSREEQGFRLRL---GCE 1532
+G + I+ PTR L +Q+ E+ KFG +G ++ +E++ F RL +
Sbjct: 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFD 181
Query: 1533 IVIATPGRLI---DVLENRYLVLNQCTYIVLDEAD------RMID-----MGF-EPDVQK 1577
I++ T L D L + ++ +D+ D + ID +GF E D++K
Sbjct: 182 ILVTTSQFLSKNFDELPKKKF-----DFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEK 236
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM--FTATMPPAVERL-------- 1627
+E + LK E+ ++ + L ++ K ++ V+ +AT P R+
Sbjct: 237 AMELI---RLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG 293
Query: 1628 -----ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 1682
YLR YI + +E++V ++ L G +IFV
Sbjct: 294 FEVGSPVFYLRNIVDSYI----VDEDSVEKLVELVKR----------LGDG----GLIFV 335
Query: 1683 NQKKGADV---LAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA----TDVA 1735
KG + LA+ LE LG NA E + G D+LV V
Sbjct: 336 PSDKGKEYAEELAEYLEDLGINAELAI-----SGFERKFEKFEEGEVDVLVGVASYYGVL 390
Query: 1736 GRGIDIKDV 1744
RGID+ +
Sbjct: 391 VRGIDLPER 399
|
Length = 1176 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-06
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 12 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 71
P Q L + +++ A TGSGKTL LL + G + +
Sbjct: 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALL-----------AILSTLLEGGGKVVYIV 83
Query: 72 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 131
P + LA++ EE ++ LGIR + G +++ ++++ TP +L +
Sbjct: 84 PLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDERL---ARYDVIVTTPEKLDSLTRK 139
Query: 132 RYLVLNQCTYIVLDEA 147
R + + +V+DE
Sbjct: 140 RPSWIEEVDLVVIDEI 155
|
Length = 766 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-05
Identities = 20/101 (19%), Positives = 33/101 (32%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
+ + + +++RER R + G ++ D + E E+
Sbjct: 109 RAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEE 168
Query: 422 RHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
R RR R D + E R RREE + R
Sbjct: 169 RDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRR 209
|
Length = 672 |
| >gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-05
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVA 1735
II+ + + +A+ L++ G+ A HG QR K SKD I+ AT
Sbjct: 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQ---KQWSKDEINIICATVAF 740
Query: 1736 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795
G GI+ DV VI++ + KSIE Y GR GR G+ V + + D + +K M+
Sbjct: 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD---YIRVKHMIS 797
Query: 1796 SSPVSTCP 1803
V P
Sbjct: 798 QGGVEQSP 805
|
Length = 1195 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 242 RQTVMFTATMP-PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD-KRKKLME 299
+QT++F+AT+ AV+ A L P V + ++I Q Y + + K L
Sbjct: 179 KQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+L + I+FV ++ LA L K G N C L G Q +R A+ L G ++
Sbjct: 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNV 298
Query: 360 LMAGDRRSR 368
L+A D +R
Sbjct: 299 LVATDVAAR 307
|
Length = 434 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (117), Expect = 2e-05
Identities = 64/331 (19%), Positives = 133/331 (40%), Gaps = 34/331 (10%)
Query: 370 RSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRS 429
+ + + ++ + + + ++ + + D + + E D+ + E +K + ++
Sbjct: 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
Query: 430 KE--RDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKK--- 484
E + +++++ +++ EEA + + E + E+ EE K AKK
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
Query: 485 EPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFT 544
E +E AKKKAEE + + E +A ++AE KK +E +K +
Sbjct: 1481 EAKKADE--AKKKAEEAKKKADEAKKAAEAKKKADEAKKAE---EAKKADEAKKAEEAKK 1535
Query: 545 KEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRL 604
+ + +++ + L++ E KK + ++K K E + + R KK R
Sbjct: 1536 ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
Query: 605 NDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQ---KRDQSKFYGEML 661
K E+ + K IKA+ K ++ K E L
Sbjct: 1596 EVMKLY-----EEEKKMKAEEAKKAEEA------------KIKAEELKKAEEEKKKVEQL 1638
Query: 662 EKRRTEAEKEQEKVR----LKKVKKREEKQK 688
+K+ E +K+ E+++ K+K EE +K
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
Length = 2084 |
| >gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-05
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVA 1060
II+ + + +A+ L++ G+ A HG QR K SKD I+ AT
Sbjct: 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQ---KQWSKDEINIICATVAF 740
Query: 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
G GI+ DV VI++ + KSIE Y GR GR G+
Sbjct: 741 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 776
|
Length = 1195 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 3e-05
Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 28/315 (8%)
Query: 393 TDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRE--RREEEA 450
D +D D D E +R+ E E + K GK E ++ E+A
Sbjct: 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDA 1127
Query: 451 SGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLT 510
++ + ++ + E D + + A ++ EE +KAE+ +++
Sbjct: 1128 RKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE---ARKAEDAKKAEAARKA 1184
Query: 511 KEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKED 570
+E R AE LRK E+ RK E RK E +R+ +AR D +K +
Sbjct: 1185 EEVRKAEELRK----AEDARK-AEAARK----------AEEERKAEEARKAEDAKKAEAV 1229
Query: 571 PEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKER 630
+ +E KD E +A +ER ++K R + + A E D +E+
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
Query: 631 HQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLK--------KVKK 682
+ + +A+K+ + + +K+ EA+K+ + + K + K
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Query: 683 REEKQKWDDRHWTEK 697
E + D+ E+
Sbjct: 1350 AEAEAAADEAEAAEE 1364
|
Length = 2084 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Query: 426 RDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKE 485
R + +++ + + +++ ++ K ++ ++ + EQ +++ + A K+
Sbjct: 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ 113
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK 545
++ + KA++ A +K K + E+ A+ K+QAE E K E +KK E K
Sbjct: 114 AEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173
Query: 546 EASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKER 590
+A E+K + +A+ + E+ K E + E +A E
Sbjct: 174 KAEAEAKAKA-EAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEA 217
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|233251 TIGR01054, rgy, reverse gyrase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 83/363 (22%), Positives = 147/363 (40%), Gaps = 59/363 (16%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797
E E +K +EP IQ+ L+ +A TG GKT F L + +++
Sbjct: 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKT-TFGLAMSLFL------- 117
Query: 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR----EEQGFRLR 853
A +G I+ PT L Q+ E+ + G+ TV + SR E++ F R
Sbjct: 118 ----AKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMER 173
Query: 854 L---GCEIVIATPGRL---IDVLENRYLVLNQCTYIVLDEAD------RMID-----MGF 896
+ +I+I T L D L ++ +I +D+ D + +D +GF
Sbjct: 174 IENGDFDILITTTMFLSKNYDELGPKF------DFIFVDDVDALLKASKNVDKLLKLLGF 227
Query: 897 -EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 955
E ++K + + LK + L KK ++ +AT P R R+
Sbjct: 228 SEELIEKAWKLIR-LRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRP---RGKRA 283
Query: 956 YLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGAD 1014
L R + VG ++ + +V + E +D ++ L+E++ + + I++V+ G +
Sbjct: 284 KLFRELLGF--EVGGGSDTLRNVVDVYVEDEDLKETLLEIVKK-LGTGGIVYVSIDYGKE 340
Query: 1015 V---LAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDIK 1067
+A+ LE G A H K +E E G D+L+ RG+D+
Sbjct: 341 KAEEIAEFLENHGVKAVAYHATKPKEDYEK----FAEGEIDVLIGVASYYGTLVRGLDLP 396
Query: 1068 DVS 1070
+
Sbjct: 397 ERV 399
|
This model describes reverse gyrase, found in both archaeal and bacterial thermophiles. This enzyme, a fusion of a type I topoisomerase domain and a helicase domain, introduces positive supercoiling to increase the melting temperature of DNA double strands. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA [DNA metabolism, DNA replication, recombination, and repair]. Length = 1171 |
| >gnl|CDD|233251 TIGR01054, rgy, reverse gyrase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-05
Identities = 83/363 (22%), Positives = 147/363 (40%), Gaps = 59/363 (16%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 1472
E E +K +EP IQ+ L+ +A TG GKT F L + +++
Sbjct: 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKT-TFGLAMSLFL------- 117
Query: 1473 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR----EEQGFRLR 1528
A +G I+ PT L Q+ E+ + G+ TV + SR E++ F R
Sbjct: 118 ----AKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMER 173
Query: 1529 L---GCEIVIATPGRL---IDVLENRYLVLNQCTYIVLDEAD------RMID-----MGF 1571
+ +I+I T L D L ++ +I +D+ D + +D +GF
Sbjct: 174 IENGDFDILITTTMFLSKNYDELGPKF------DFIFVDDVDALLKASKNVDKLLKLLGF 227
Query: 1572 -EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 1630
E ++K + + LK + L KK ++ +AT P R R+
Sbjct: 228 SEELIEKAWKLIR-LRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRP---RGKRA 283
Query: 1631 YLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGAD 1689
L R + VG ++ + +V + E +D ++ L+E++ + + I++V+ G +
Sbjct: 284 KLFRELLGF--EVGGGSDTLRNVVDVYVEDEDLKETLLEIVKK-LGTGGIVYVSIDYGKE 340
Query: 1690 V---LAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDIK 1742
+A+ LE G A H K +E E G D+L+ RG+D+
Sbjct: 341 KAEEIAEFLENHGVKAVAYHATKPKEDYEK----FAEGEIDVLIGVASYYGTLVRGLDLP 396
Query: 1743 DVS 1745
+
Sbjct: 397 ERV 399
|
This model describes reverse gyrase, found in both archaeal and bacterial thermophiles. This enzyme, a fusion of a type I topoisomerase domain and a helicase domain, introduces positive supercoiling to increase the melting temperature of DNA double strands. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA [DNA metabolism, DNA replication, recombination, and repair]. Length = 1171 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-05
Identities = 49/255 (19%), Positives = 105/255 (41%), Gaps = 14/255 (5%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
S + KR S +++R+ + E + + + L+ + + +
Sbjct: 649 SGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR 708
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKK 484
R+ ER ++ + E E S+ + ++E E E++ +E +++ ++
Sbjct: 709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEEL---EELQERLEELEE 765
Query: 485 EPLSLEELLAKKKAEEEARSKPKFLTKEERAA--EALRKRQAEVEEMRKKMEEERKKRQE 542
E SLEE LAK K E E + + +EE E L + + ++ + +++E ++R+
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
Query: 543 FTKEASF--------ESKRENFDARLRRDREKKKEDPEE-KELNKDKEREGEAIKERYLG 593
+E E K + + L ++ +E EE +EL +KE + +KE
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885
Query: 594 LVKKKRRVRRLNDRK 608
+ + +R L
Sbjct: 886 KEELEEELRELESEL 900
|
Length = 1163 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-05
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 14 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP--YAIIMA 71
Q A+ + + R+++ TGSGKT +FLLP+L + + P A+++
Sbjct: 75 QVDALRLIREGRNVVVTTGTGSGKTESFLLPIL------------DHLLRDPSARALLLY 122
Query: 72 PTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 129
PT LA E + P + G EE+ +R +I++ P D+L
Sbjct: 123 PTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP----DML 178
Query: 130 E-------NRYLVL-NQCTYIVLDEA 147
+ +L L Y+V+DE
Sbjct: 179 HYLLLRNHDAWLWLLRNLKYLVVDEL 204
|
Length = 851 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 320 DVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+ LA+ L++LG LHGG QE+RE L+ G +L+A
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVA 43
|
Length = 82 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 20/213 (9%)
Query: 385 YDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRE 444
Y+R +++ R + R + + E ++K+ ++R K+ + + +++
Sbjct: 64 YNRQQQQQKSAKRAEEQRKKKEQQQA-----EELQQKQAAEQERLKQLEKERLAAQEQKK 118
Query: 445 RREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARS 504
+ EE A + K + E + A A+ E A KKA EA+
Sbjct: 119 QAEEAAKQAALKQKQAE-------EAAAKAAAAAKAKAEAEAKRAAA--AAKKAAAEAKK 169
Query: 505 KPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDR 564
K + ++ AAEA K++AE E K E +KK + K+ + ++ A +
Sbjct: 170 KAEAEAAKKAAAEA--KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA 227
Query: 565 EK----KKEDPEEKELNKDKEREGEAIKERYLG 593
K K E+ K E+ A +
Sbjct: 228 AKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVD 260
|
Length = 387 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 8e-05
Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 16/208 (7%)
Query: 375 KRRSRSRERDYDRV-----RERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRS 429
+R +R ER +R R+++ + D+ R++ D E E + + +
Sbjct: 61 ERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESR 120
Query: 430 KERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSL 489
+ER+ + EG + ++ + E+ EEE+K E +
Sbjct: 121 EEREEVEETEGVTKSEQKND--------WRDAEECQKEEKEPEPEEEEKPKRGSLEENNG 172
Query: 490 EELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASF 549
E + K K E S+ + A + K + + +E ++EE +KKR+E K
Sbjct: 173 EFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEE 232
Query: 550 ES---KRENFDARLRRDREKKKEDPEEK 574
E K+E D + R + EK++ E +
Sbjct: 233 EEQRRKQEEADRKSREEEEKRRLKEEIE 260
|
Length = 431 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 380 SRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRRE 439
+ + E RD R R R RSR R+R ++ RR R ++R R+
Sbjct: 14 EESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRD 73
Query: 440 GYRRERREEEASGSKHKSRDKEGY 463
R+R + S S+ +SRD+
Sbjct: 74 DRDRDRYDRSRSRSRSRSRDRRRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 7/224 (3%)
Query: 370 RSPPRKRRSRSRERDY-DRVRERD---TDRSRDDRGRDRDRDRLERD-RSREREREKRHH 424
R R+ R R + +R +E TD+S + R D + E E+E+
Sbjct: 62 RLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESRE 121
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKK 484
R+ +E +G + E R EE + + +E +P + + E K
Sbjct: 122 EREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKH 181
Query: 485 EPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFT 544
+ A+ E + K K++ AA L + + + EE RK +EEE ++R++
Sbjct: 182 TENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQ-- 239
Query: 545 KEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIK 588
+EA +S+ E RL+ + E+++ + EK ++ E K
Sbjct: 240 EEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKK 283
|
Length = 431 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ TP QR AIP+ + ++++ + TGSGKTLA L + I L ++ R + + Y
Sbjct: 30 FGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAI---IDELFRLGREGELEDKVY 86
Query: 67 AIIMAPTRELAQQIE 81
+ ++P R L I
Sbjct: 87 CLYVSPLRALNNDIH 101
|
Length = 876 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807
+ TP QR AIP+ + ++++ + TGSGKTLA L + I L ++ R + + Y
Sbjct: 30 FGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAI---IDELFRLGREGELEDKVY 86
Query: 808 AIIMAPTRELAQQIE 822
+ ++P R L I
Sbjct: 87 CLYVSPLRALNNDIH 101
|
Length = 876 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
+ TP QR AIP+ + ++++ + TGSGKTLA L + I L ++ R + + Y
Sbjct: 30 FGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAI---IDELFRLGREGELEDKVY 86
Query: 1483 AIIMAPTRELAQQIE 1497
+ ++P R L I
Sbjct: 87 CLYVSPLRALNNDIH 101
|
Length = 876 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 15/206 (7%)
Query: 385 YDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRE 444
Y R++ + + + ++ R + + E+ + ++ R + E K+R + ++
Sbjct: 64 YGRIQSQQSSAKKGEQQR---KKKEEQVAEELKPKQAAEQERLKQLE---KERLKAQEQQ 117
Query: 445 RREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARS 504
++ EEA K E + EQ + E+ K A A K + E AK KA EA+
Sbjct: 118 KQAEEAE----KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEA--AKLKAAAEAKK 171
Query: 505 KPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDR 564
K + + +AAE + + +K E + ++ EA ++K E ++
Sbjct: 172 KAE---EAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Query: 565 EKKKEDPEEKELNKDKEREGEAIKER 590
++ + DK ER
Sbjct: 229 AAAEKKKAAAKAKADKAAAAAKAAER 254
|
Length = 387 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 83/386 (21%), Positives = 145/386 (37%), Gaps = 64/386 (16%)
Query: 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVW 789
E +P + ++++ G E P+Q A+ GL + +++ V+ T SGKTL
Sbjct: 197 DELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTL--------- 247
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
I L I R+ G + + P LA Q E+ + + LG++ + V G+S
Sbjct: 248 IGELAGIPRL--LSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRV-GMS----- 299
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
R++ E V+ D++ Y + D ++ G + + +
Sbjct: 300 -RIKTREEPVVVDTSPDADIIVGTY-----------EGIDYLLRTGKDLGDIGTVVIDEI 347
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS-------YLRRPAT 962
L+ D E + L+ Q + +AT+ E LA+ Y RP
Sbjct: 348 HTLE-DEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLYDERPV- 404
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--------GVKKPVIIFVNQKKGAD 1014
P ER +V+ +E +K + ++ R G + I+F ++
Sbjct: 405 --------PLER--HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCH 454
Query: 1015 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN 1074
LA L G A H G ++R+ + +V T G+D S VI
Sbjct: 455 ELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-ASQVIF 513
Query: 1075 YDMAKSIE-----DYTHRIGRTGRAG 1095
+A IE ++ +GR GR
Sbjct: 514 ESLAMGIEWLSVREFQQMLGRAGRPD 539
|
Length = 830 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 83/386 (21%), Positives = 145/386 (37%), Gaps = 64/386 (16%)
Query: 1406 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVW 1464
E +P + ++++ G E P+Q A+ GL + +++ V+ T SGKTL
Sbjct: 197 DELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTL--------- 247
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
I L I R+ G + + P LA Q E+ + + LG++ + V G+S
Sbjct: 248 IGELAGIPRL--LSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRV-GMS----- 299
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
R++ E V+ D++ Y + D ++ G + + +
Sbjct: 300 -RIKTREEPVVVDTSPDADIIVGTY-----------EGIDYLLRTGKDLGDIGTVVIDEI 347
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS-------YLRRPAT 1637
L+ D E + L+ Q + +AT+ E LA+ Y RP
Sbjct: 348 HTLE-DEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEE-LAKKLGAKLVLYDERPV- 404
Query: 1638 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--------GVKKPVIIFVNQKKGAD 1689
P ER +V+ +E +K + ++ R G + I+F ++
Sbjct: 405 --------PLER--HLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCH 454
Query: 1690 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN 1749
LA L G A H G ++R+ + +V T G+D S VI
Sbjct: 455 ELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFP-ASQVIF 513
Query: 1750 YDMAKSIE-----DYTHRIGRTGRAG 1770
+A IE ++ +GR GR
Sbjct: 514 ESLAMGIEWLSVREFQQMLGRAGRPD 539
|
Length = 830 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATV 269
K RQT++F+ATMP V LAR +LR P +
Sbjct: 173 KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
RRSRSRSP R RRSRS R R R R R RD R R+RD+ + ++RER+K
Sbjct: 39 RRRSRSRSPHRSRRSRSPRR--HRSRSRSPSRRRD---RKRERDK-DAREPKKRERQK 90
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-04
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRG-RDRDRDRLERDRSRERERE 420
A + + R+RR R R+ + R +R E + ER R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 421 KRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKE 461
R ER + RRE R+ + + + + +E
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE 216
|
Length = 672 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-04
Identities = 42/258 (16%), Positives = 92/258 (35%), Gaps = 27/258 (10%)
Query: 378 SRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSR---------EREREKRHHRRDR 428
E+ R+ E + + + + ++RLE + + E R
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788
Query: 429 SKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLS 488
++ + E E + + ++ E EQ + EEE + K + L
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
Query: 489 LEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEM-------RKKMEEERKKRQ 541
E +K+ EE + ++E + L++ + E EE+ ++ E +++ +
Sbjct: 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908
Query: 542 EFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKER--YLGLV---- 595
+ + + + E++ E+ E L + ERE E ++E LG V
Sbjct: 909 KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRA 968
Query: 596 -----KKKRRVRRLNDRK 608
+ + R L ++
Sbjct: 969 IEEYEEVEERYEELKSQR 986
|
Length = 1163 |
| >gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated hydrophilic C-term | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 374 RKRRSRSRERDYDRVRERDTDRSRDDRGRDRD---RDRLERDRSREREREKRHHRRDRSK 430
+ R ERD DR R R+R R + R R RDR R R R++ RDR
Sbjct: 22 DEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYD 81
Query: 431 ERDGKDRREGYRRERR 446
+ R R RR
Sbjct: 82 RSRSRSRSRSRDRRRR 97
|
This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known. Length = 97 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-04
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 247 FTATMPPAVERLARSYLR-RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV 305
TAT P V R L + A ++ GS +P ++ + D+ L VL +
Sbjct: 172 LTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEK-GEPSDQLAFLATVLPQL- 229
Query: 306 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
K II+ +K + LA+ L K G +A H G E+RE
Sbjct: 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERE 270
|
Length = 590 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 6e-04
Identities = 22/101 (21%), Positives = 36/101 (35%)
Query: 362 AGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREK 421
A + +P + RER R + +R+ E ER++
Sbjct: 112 AAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDE 171
Query: 422 RHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
R R DR + +R E RRE R + + R ++G
Sbjct: 172 RRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
|
Length = 672 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-04
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 3/144 (2%)
Query: 460 KEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEAL 519
+ G E +EEE + AK+E + A++ A EA + K AE
Sbjct: 26 ELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEA 85
Query: 520 RKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKD 579
+ A E + E+E + E A+ K + + + + KKK+ +
Sbjct: 86 AEAAAAAEAAARPAEDEAARPAE---AAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGK 142
Query: 580 KEREGEAIKERYLGLVKKKRRVRR 603
+ + G+ + R ++K++ ++
Sbjct: 143 RGKGGKGRRRRRGRRRRRKKKKKQ 166
|
Length = 746 |
| >gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 401 GRDRDRDR---LERDRSREREREKRHHRRDRSKERDGKDRREGYRRERRE-EEASGSKHK 456
GR R R R RSR R+R +R R RS+ERD + RR R R S +H+
Sbjct: 2 GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERD-RRRRSRSRSPHRSRRSRSPRRHR 60
Query: 457 SRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSK 505
SR + ++ D++ + +++ L EE L K EE K
Sbjct: 61 SRSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMMK 109
|
This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 0.001
Identities = 47/242 (19%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 353 KGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
K ++++ A + + + +K ++ + + E + + + + D+ + +
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVIS 472
+++ E +++ KE + + E +++ EE+ + K ++E E+
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
Query: 473 DEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEV--EEMR 530
EE+ K A EE KK EEE + +EE+ AE +RK + V EE+
Sbjct: 1739 AEEDKKKA---------EEA---KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
Query: 531 KKMEEERKKRQEFTKE--ASFESKRE-NFDARLRRDREKKKEDPEEKELNKDKEREGEAI 587
++ E+ R + + K+ +F + E + L + K+ ED KE+ K + E
Sbjct: 1787 EEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEA 1846
Query: 588 KE 589
Sbjct: 1847 DA 1848
|
Length = 2084 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 16/234 (6%)
Query: 360 LMAGDRRSRSRSPPRKRRSRSRERDYDRVRER--DTDRSRDDRGRDRDRDRLERDRSRER 417
M G R+ R + + R+RER R + R D +
Sbjct: 654 AMTGGSRAPRGGILFSRSEPAELQ---RLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
Query: 418 EREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEED 477
+ + KE + ++ E +ER EE ++ E + +E + E+
Sbjct: 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK-SELKELEARIEE 769
Query: 478 KGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEER 537
K +L +L EAR + + + L + + +E +++E++
Sbjct: 770 LEEDLHKLEEALNDL--------EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
Query: 538 KKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERY 591
+ ++ E + + + +E+ K +E E K+ E E E
Sbjct: 822 NRLTL--EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL 873
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 374 RKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSRERE 418
RKR SRSRER+ + ++ R + R+R RDR ER+RSRE +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
|
This family of proteins represents the complementary sex determiner in the honeybee. In the honeybee, the mechanism of sex determination depends on the csd gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development. Length = 146 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 8/207 (3%)
Query: 403 DRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
+R++ R E R +ERE+ +R +E D + +E +RE++++ + ++
Sbjct: 82 EREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQE--KREKQKKLREEIDEFNEERIE 139
Query: 463 YEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKR 522
+ E+ + EE+ + + E + + E K + + + E
Sbjct: 140 RK--EEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDE 197
Query: 523 QAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKER 582
+ E++E+R + +E +R+E KE KR L+R RE E EEKE +ER
Sbjct: 198 REELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRARE---EQIEEKEERLQEER 254
Query: 583 EGE-AIKERYLGLVKKKRRVRRLNDRK 608
E A +ER L + + + N K
Sbjct: 255 AEEEAERERMLEKQAEDEELEQENAEK 281
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 388 VRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERRE 447
+ + DR + R +R RDR+ R+ RD R+G++ RE RR RR+
Sbjct: 594 PKAEAKPERQQDRRKPRQNNR--RDRNERRDT------RDNRTRREGRENREENRRNRRQ 645
Query: 448 EEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPK 507
+ + ++R+ + E TE+ + +E+ + +++ +E K++A++EA K
Sbjct: 646 AQQQTA--ETRESQQAEVTEKAR-TQDEQQQAPRRERQRRRNDE---KRQAQQEA----K 695
Query: 508 FLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQ 541
L EE++ + E EE ++++ RK+RQ
Sbjct: 696 ALNVEEQSVQE-----TEQEERVQQVQPRRKQRQ 724
|
Length = 1068 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 65/368 (17%), Positives = 118/368 (32%), Gaps = 75/368 (20%)
Query: 9 EPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 64
E P Q +A+ R + V TG+GKT+ +
Sbjct: 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAA-----------EAIAE----LK 80
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
+++ PT+EL Q E KF + GG +E + + + +AT
Sbjct: 81 RSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY--GGGEKELEPAK------VTVAT--- 129
Query: 125 LIDVLENR----YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
+ L R + N+ I+ DE + + ++ILE ++ P
Sbjct: 130 -VQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRILEL--LSAAYP------- 175
Query: 181 ENKLLANYNSKKKYRQTVMFTATMP---PAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237
L TAT +I + + + P + + + Y +
Sbjct: 176 ---RLG-------------LTATPEREDGGRIGDLFDL--IGPIVYEVSLKELIDEGYLA 217
Query: 238 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKK 296
KY + + T T E A+ R + + +I + +
Sbjct: 218 PYKYVE-IKVTLTEDEEREY-AKESARFRELLRARGTLRAENEARRIAIASERKIAAVRG 275
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+ RG +IF + + A +AK G + G +E+RE L + G
Sbjct: 276 LLLKHARG--DKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332
Query: 357 KDILMAGD 364
+L+
Sbjct: 333 IKVLVTVK 340
|
Length = 442 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.002
Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 20/236 (8%)
Query: 482 AKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQ 541
AK++ + E EEA+ +E R AE +K+ + + + + E ++
Sbjct: 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKA 1142
Query: 542 EFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRV 601
E ++A E + AR + + +K E+ + E K E +A + R ++K
Sbjct: 1143 EEARKA--EDAKRVEIAR-KAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199
Query: 602 RRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 661
R+ + A E+ + ++ + + + A D + K+ + + E +
Sbjct: 1200 RKAEAAR-----KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEI 1254
Query: 662 EK----------RRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTE--KSLDEMTER 705
K RR A K +E + ++KK EEK+K D+ E K DE ++
Sbjct: 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK 1310
|
Length = 2084 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.002
Identities = 11/98 (11%), Positives = 29/98 (29%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
+ + + + + + R R + R + + +
Sbjct: 101 KAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADA 160
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEG 462
+E + RR G R +R+ E G + + ++
Sbjct: 161 AERTEEEERDERRRRGDREDRQAEAERGERGRREERGR 198
|
Length = 672 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 8/197 (4%)
Query: 414 SREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISD 473
+E + + + ++ K+ + ++++E+ K + +E E
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEK----KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Query: 474 EEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKM 533
E+E K + + + K+ + K K K++ E ++RQA E ++ K
Sbjct: 149 EKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKP 208
Query: 534 EEE---RKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKER 590
EE ++ +E E+ + + + L K A E
Sbjct: 209 EEPDVNEEREKEEDDGKDRETTTSPME-EDESRQSSEISRRSSSSLKKPDPSPSMASPET 267
Query: 591 YLGLVKKKRRVRRLNDR 607
+ + R R
Sbjct: 268 RESSKRTETRPRTSLRP 284
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 17/167 (10%)
Query: 444 ERREEEASGSKHKSRD----KEGYEPTEQMVISDEEEDKGAAAKK-EPLSLEELLAKKKA 498
+ ++E A +K ++R K G E ++ +E +K A K + +++EE AK++A
Sbjct: 9 DLKKEAARRAKEEARKRLVAKHGAEISKL---EEENREKEKALPKNDDMTIEE--AKRRA 63
Query: 499 EEEARSKPKFLTKEERAA-------EALRKRQAEVEEMRKKMEEERKKRQEFTKEASFES 551
A++K L K++R E + + + K K+++E T+E + E
Sbjct: 64 AAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEE 123
Query: 552 KRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKK 598
K + K ++K ++ E E ++ K
Sbjct: 124 KAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAA 170
|
Length = 430 |
| >gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.002
Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 34 GSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 92
GSGKT+ A L L + G A +MAPT LA+Q E K PLG
Sbjct: 292 GSGKTVVAALAALAA-------------IEAGYQAALMAPTEILAEQHYENLKKLLEPLG 338
Query: 93 IRTVLVVGGLS---REEQGFRLRLG-CEIVIAT 121
IR L+ G L R E + G +IVI T
Sbjct: 339 IRVALLTGSLKGKERREILEAIASGEADIVIGT 371
|
Length = 681 |
| >gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.002
Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 775 GSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 833
GSGKT+ A L L + G A +MAPT LA+Q E K PLG
Sbjct: 292 GSGKTVVAALAALAA-------------IEAGYQAALMAPTEILAEQHYENLKKLLEPLG 338
Query: 834 IRTVLVVGGLS---REEQGFRLRLG-CEIVIAT 862
IR L+ G L R E + G +IVI T
Sbjct: 339 IRVALLTGSLKGKERREILEAIASGEADIVIGT 371
|
Length = 681 |
| >gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.002
Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 1450 GSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 1508
GSGKT+ A L L + G A +MAPT LA+Q E K PLG
Sbjct: 292 GSGKTVVAALAALAA-------------IEAGYQAALMAPTEILAEQHYENLKKLLEPLG 338
Query: 1509 IRTVLVVGGLS---REEQGFRLRLG-CEIVIAT 1537
IR L+ G L R E + G +IVI T
Sbjct: 339 IRVALLTGSLKGKERREILEAIASGEADIVIGT 371
|
Length = 681 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.003
Identities = 45/259 (17%), Positives = 89/259 (34%), Gaps = 14/259 (5%)
Query: 350 NSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRL 409
++G KD + S R+ S E E S + +++
Sbjct: 624 KVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQ 683
Query: 410 ERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQM 469
E+ S + E + + K+ + +EE + +++DK E
Sbjct: 684 EKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLE 743
Query: 470 VISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEM 529
E+E++ ++ + EE ++ +E+ + EE K + E EE
Sbjct: 744 QKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELA-------EEEEKTEKLKVEEEKEEK 796
Query: 530 RKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKE 589
K EEE + +E E K E + +++E +E+EL + E K
Sbjct: 797 LKAQEEELRALEE-------ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKL 849
Query: 590 RYLGLVKKKRRVRRLNDRK 608
L + +R + +
Sbjct: 850 EKLAEEELERLEEEITKEE 868
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 7/236 (2%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHR 425
R P K + + ++ + R RE + R R + ++ ++++E + +
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196
Query: 426 RDRSKER-DGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKK 484
R ++E GK ER +EE G ++ E + + K
Sbjct: 197 RQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKP 256
Query: 485 EPLSLEELLAKK--KAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
+P + E R + R A A R A RK++ + Q
Sbjct: 257 DPSPSMASPETRESSKRTETRPRTSLRPPSARPASA---RPAPPRVKRKEIVTVLQDAQG 313
Query: 543 FTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKK 598
K S E + D E + + E+ GLV+K
Sbjct: 314 VGKIVS-NVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGGLVQKI 368
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 28/207 (13%)
Query: 418 EREKRHHRRDRSKERDGKDRREGYRR--ERREEEASGSKHKSRDKEGYEPTEQMVISDEE 475
E++K+ R + + E E + +E + + +K E +
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL----EELKEELESL 356
Query: 476 EDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQ-----AEVEEMR 530
E + + E LEEL ++ + EE + R+ A + Q E+E +
Sbjct: 357 EAELEELEAE---LEELESRLEELEEQL-------ETLRSKVAQLELQIASLNNEIERLE 406
Query: 531 KKME--EERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKE-----LNKDKERE 583
++E E+R++R + E + E L+ + E+ +E+ EE + L + E
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
Query: 584 GEAIKERYLGLVKKKRRVRRLNDRKFV 610
E ++E L +R + +L R
Sbjct: 467 REELEEAEQALDAAERELAQLQARLDS 493
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 43/249 (17%), Positives = 89/249 (35%), Gaps = 24/249 (9%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSR----EREREKRHHRRDRSK 430
R E+ +R+ + + + + + +RLE E E E+ + ++ K
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
Query: 431 ERDGKDRREG------YRRERREEEASGSKHKSRDKEGYEPTEQMVISDEE----EDKGA 480
E R E + +S ++ ++ +E+ +
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
Query: 481 AAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKR 540
+ E LEEL+ + E E + E A LR EE+ +++ E KR
Sbjct: 856 SLAAEIEELEELIEE--LESELEALLNERASLEEALALLRSEL---EELSEELRELESKR 910
Query: 541 QEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKK--- 597
E +E E + + LR + + + D ++ L+++ E + +
Sbjct: 911 SELRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
Query: 598 -KRRVRRLN 605
+RR++RL
Sbjct: 970 ARRRLKRLE 978
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1832 | |||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0951|consensus | 1674 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0952|consensus | 1230 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0339|consensus | 731 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0343|consensus | 758 | 100.0 | ||
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| KOG0347|consensus | 731 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0345|consensus | 567 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0346|consensus | 569 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0346|consensus | 569 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0327|consensus | 397 | 100.0 | ||
| KOG4284|consensus | 980 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| KOG4284|consensus | 980 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| KOG0952|consensus | 1230 | 100.0 | ||
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| KOG0349|consensus | 725 | 100.0 | ||
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| KOG0923|consensus | 902 | 100.0 | ||
| KOG0951|consensus | 1674 | 100.0 | ||
| KOG0349|consensus | 725 | 100.0 | ||
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| KOG0924|consensus | 1042 | 100.0 | ||
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| KOG0352|consensus | 641 | 100.0 | ||
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| KOG0351|consensus | 941 | 100.0 | ||
| KOG0351|consensus | 941 | 100.0 | ||
| KOG0354|consensus | 746 | 100.0 | ||
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| KOG0354|consensus | 746 | 100.0 | ||
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| KOG0352|consensus | 641 | 99.98 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.98 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.97 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.97 | |
| KOG0353|consensus | 695 | 99.97 | ||
| KOG0353|consensus | 695 | 99.97 | ||
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.96 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.96 | |
| KOG0922|consensus | 674 | 99.96 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.96 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.96 | |
| KOG0947|consensus | 1248 | 99.95 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.95 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.95 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.95 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.94 | |
| KOG0948|consensus | 1041 | 99.94 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.94 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| KOG0947|consensus | 1248 | 99.94 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.94 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.94 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.94 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.94 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.94 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.94 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.93 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.93 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.93 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.93 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.93 | |
| KOG0950|consensus | 1008 | 99.93 | ||
| KOG0948|consensus | 1041 | 99.92 | ||
| KOG0950|consensus | 1008 | 99.92 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.92 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.91 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.91 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.91 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.9 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.9 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.89 | |
| KOG0925|consensus | 699 | 99.89 | ||
| KOG0926|consensus | 1172 | 99.89 | ||
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.88 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.88 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.86 | |
| KOG0920|consensus | 924 | 99.86 | ||
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.83 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.83 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.83 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.82 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.82 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.82 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.81 | |
| KOG0949|consensus | 1330 | 99.8 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.8 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.8 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.79 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.78 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.78 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.77 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.76 | |
| KOG0949|consensus | 1330 | 99.76 | ||
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.76 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.76 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.76 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.75 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.75 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.74 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.74 | |
| KOG0922|consensus | 674 | 99.74 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.73 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.73 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.72 | |
| KOG4150|consensus | 1034 | 99.72 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.71 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.71 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.7 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.69 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.69 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.66 | |
| KOG0924|consensus | 1042 | 99.65 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.64 | |
| KOG0923|consensus | 902 | 99.64 | ||
| KOG4150|consensus | 1034 | 99.63 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.63 | |
| KOG0920|consensus | 924 | 99.62 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.62 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.61 | |
| KOG1123|consensus | 776 | 99.61 | ||
| KOG1123|consensus | 776 | 99.61 | ||
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.59 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.59 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.56 | |
| KOG0926|consensus | 1172 | 99.56 | ||
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.56 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.54 | |
| KOG0385|consensus | 971 | 99.53 | ||
| KOG0953|consensus | 700 | 99.53 | ||
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.53 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.51 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.5 | |
| KOG0925|consensus | 699 | 99.47 | ||
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.47 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.47 | |
| KOG0385|consensus | 971 | 99.46 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.46 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.43 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.42 | |
| KOG0953|consensus | 700 | 99.42 | ||
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.41 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.35 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.35 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.35 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.33 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.32 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.31 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.3 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.29 | |
| KOG0384|consensus | 1373 | 99.28 | ||
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.27 | |
| KOG0390|consensus | 776 | 99.27 | ||
| KOG0387|consensus | 923 | 99.26 | ||
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.23 | |
| KOG0390|consensus | 776 | 99.23 | ||
| KOG0387|consensus | 923 | 99.22 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.22 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.21 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.21 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.17 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.16 | |
| KOG0384|consensus | 1373 | 99.14 | ||
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.14 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.13 | |
| KOG1000|consensus | 689 | 99.11 | ||
| KOG0392|consensus | 1549 | 99.09 | ||
| KOG1000|consensus | 689 | 99.07 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.07 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.07 | |
| KOG0389|consensus | 941 | 98.98 | ||
| KOG0921|consensus | 1282 | 98.96 | ||
| KOG0389|consensus | 941 | 98.94 | ||
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.93 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.88 | |
| KOG2340|consensus | 698 | 98.85 | ||
| KOG0392|consensus | 1549 | 98.83 | ||
| KOG1002|consensus | 791 | 98.81 | ||
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.78 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.78 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.75 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.75 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.73 | |
| KOG4439|consensus | 901 | 98.71 | ||
| KOG1002|consensus | 791 | 98.7 | ||
| KOG2340|consensus | 698 | 98.66 | ||
| KOG4439|consensus | 901 | 98.66 | ||
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.6 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.59 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.59 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.53 | |
| KOG0386|consensus | 1157 | 98.53 | ||
| KOG0386|consensus | 1157 | 98.5 | ||
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.49 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.44 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.43 | |
| KOG0388|consensus | 1185 | 98.41 | ||
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.39 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.37 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.35 | |
| KOG0388|consensus | 1185 | 98.25 | ||
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.21 | |
| KOG0921|consensus | 1282 | 98.08 | ||
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 98.05 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.95 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.93 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.93 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.9 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.87 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.75 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.67 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.59 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.5 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.45 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.33 | |
| KOG1802|consensus | 935 | 97.25 | ||
| KOG1802|consensus | 935 | 97.24 | ||
| KOG1803|consensus | 649 | 97.22 | ||
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.22 | |
| KOG4676|consensus | 479 | 97.18 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.08 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.08 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.08 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.07 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.0 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.88 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.84 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.81 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.8 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.79 | |
| KOG1803|consensus | 649 | 96.78 | ||
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 96.77 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.61 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.6 | |
| TIGR01642 | 509 | U2AF_lg U2 snRNP auxilliary factor, large subunit, | 96.6 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.55 | |
| KOG2888|consensus | 453 | 96.46 | ||
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.45 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.43 | |
| KOG4676|consensus | 479 | 96.41 | ||
| KOG0391|consensus | 1958 | 96.4 | ||
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.4 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.33 | |
| KOG1805|consensus | 1100 | 96.27 | ||
| KOG0391|consensus | 1958 | 96.26 | ||
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.21 | |
| KOG1805|consensus | 1100 | 96.16 | ||
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.14 | |
| KOG0151|consensus | 877 | 96.13 | ||
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.1 | |
| KOG1132|consensus | 945 | 96.08 | ||
| KOG1132|consensus | 945 | 96.02 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 95.97 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.87 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.84 | |
| PRK06526 | 254 | transposase; Provisional | 95.84 | |
| KOG1015|consensus | 1567 | 95.78 | ||
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 95.76 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.75 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.7 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.66 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.65 | |
| KOG2888|consensus | 453 | 95.47 | ||
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 95.43 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.38 | |
| KOG0670|consensus | 752 | 95.35 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.29 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 95.19 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.04 | |
| KOG1015|consensus | 1567 | 95.03 | ||
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.02 | |
| TIGR01622 | 457 | SF-CC1 splicing factor, CC1-like family. A homolog | 95.01 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.83 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.83 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 94.78 | |
| PRK08181 | 269 | transposase; Validated | 94.68 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 94.62 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 94.6 | |
| KOG0147|consensus | 549 | 94.43 | ||
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 94.41 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.33 | |
| KOG4368|consensus | 757 | 94.31 | ||
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 94.26 | |
| KOG0151|consensus | 877 | 94.23 | ||
| KOG0835|consensus | 367 | 94.2 | ||
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.19 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 94.17 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 94.1 | |
| PRK06526 | 254 | transposase; Provisional | 94.06 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.04 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 93.95 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 93.89 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 93.87 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 93.73 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 93.63 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 93.63 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 93.61 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 93.5 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.46 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 93.31 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 93.22 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 93.12 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 93.08 | |
| PRK08181 | 269 | transposase; Validated | 93.0 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 92.88 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 92.88 | |
| KOG0701|consensus | 1606 | 92.84 | ||
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 92.79 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 92.75 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 92.73 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 92.73 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.71 | |
| KOG0796|consensus | 319 | 92.69 | ||
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 92.62 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.5 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.46 | |
| KOG0670|consensus | 752 | 92.45 | ||
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 92.32 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 92.29 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.26 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 92.25 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 92.21 | |
| KOG0733|consensus | 802 | 92.2 | ||
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 92.19 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 92.19 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 92.15 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 92.12 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 92.09 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 92.09 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 91.97 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 91.92 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 91.88 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 91.86 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.85 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 91.76 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.64 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 91.61 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 91.56 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 91.54 | |
| KOG0701|consensus | 1606 | 91.44 | ||
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 91.36 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.27 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 91.21 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.2 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 91.16 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 91.15 | |
| PRK08727 | 233 | hypothetical protein; Validated | 91.05 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 90.92 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 90.86 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 90.81 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 90.78 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 90.76 | |
| PRK08727 | 233 | hypothetical protein; Validated | 90.69 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 90.54 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 90.42 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 90.34 | |
| PRK12377 | 248 | putative replication protein; Provisional | 90.32 | |
| PRK08116 | 268 | hypothetical protein; Validated | 90.27 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 90.27 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 90.19 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 90.16 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 90.16 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 90.15 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 90.13 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 89.94 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 89.93 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 89.9 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 89.89 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 89.89 |
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-110 Score=967.57 Aligned_cols=567 Identities=72% Similarity=1.146 Sum_probs=549.9
Q ss_pred hhhhhHHHHHHhccccc-ccccccccCCCccccccCCCCcccccccccccccccccccCCCcccccchhhhhhhhhhhHH
Q psy6409 580 KEREGEAIKERYLGLVK-KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG 658 (1832)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 658 (1832)
.+++...++++|+|..+ +|||.++.++++|+||||+.|||+.++++||..+|..++||||+++|+|++.|++.+++ ++
T Consensus 97 ~~K~~~ai~~rylg~~k~kkkk~r~~~~~kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~-~~ 175 (673)
T KOG0333|consen 97 DEKEVRAIKERYLGEVKPKKKKGRRLNDKKFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSK-YG 175 (673)
T ss_pred HHHHHHHHHHHHhcccCccccccccccccceEEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhh-hh
Confidence 56889999999999888 66666777899999999999999999999999999999999999999999999999888 99
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhHHhhccccccCCChhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHH
Q psy6409 659 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTE 738 (1832)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~ 738 (1832)
++++++.++.+++++++..++..+++.+..|+++||+++.+++|+++||++|+++|+|.++|+.+|.|+++|++.+||..
T Consensus 176 ~~~e~r~t~~~ke~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e 255 (673)
T KOG0333|consen 176 EMMEKRRTEDEKEQEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLE 255 (673)
T ss_pred hHhhhhcchhhhhhHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
++++|.+.||..|||||++|||..++++|+|++|+||||||++|++|++.+|..+|.+........||+++||+|||+||
T Consensus 256 ~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLa 335 (673)
T KOG0333|consen 256 LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELA 335 (673)
T ss_pred HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChH
Q psy6409 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 898 (1832)
Q Consensus 819 ~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~ 898 (1832)
+||.++..+|+.++|++++.++||.+.++|...+..+|+|+|||||+|+|+|.+.++.+++|.+||+||||+|+|+||++
T Consensus 336 qqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~ 415 (673)
T KOG0333|consen 336 QQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP 415 (673)
T ss_pred HHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE
Q psy6409 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978 (1832)
Q Consensus 899 ~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~ 978 (1832)
++..|+..+|..+..|++...+....++.++.....++|+++||||||+.++.+++.||.+|+.++++..+.+.+.++|.
T Consensus 416 dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 416 DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 979 ~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
++.+.++.|...|.++|.....+|+|||+|+++.|+.||+.|.+.|+.++.+||+.+|++|+.++..|++|..+||||||
T Consensus 496 v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD 575 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD 575 (673)
T ss_pred EEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCccccccccccccccc
Q psy6409 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFC 1138 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~ 1138 (1832)
+++||||||+|++||||||++++++|+||||||||+|+.|+|++|+++.|
T Consensus 576 vAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d------------------------------ 625 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD------------------------------ 625 (673)
T ss_pred ccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccch------------------------------
Confidence 99999999999999999999999999999999999999999999999988
Q ss_pred ccCCchhHHHHHHhhhcCCCCCCchhhcCCCcccCCCCccccc
Q psy6409 1139 TKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMA 1181 (1832)
Q Consensus 1139 ~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1181 (1832)
..++|||++++.++..+.|||+|.+|++++.+++.+...
T Consensus 626 ----t~v~ydLkq~l~es~~s~~P~Ela~h~~a~~K~~~~~~k 664 (673)
T KOG0333|consen 626 ----TAVFYDLKQALRESVKSHCPPELANHPDAQFKPGTIKAK 664 (673)
T ss_pred ----hHHHHHHHHHHHHhhhccCChhhccChhhcccccccccc
Confidence 678999999999999999999999999999998866544
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-103 Score=909.00 Aligned_cols=576 Identities=72% Similarity=1.134 Sum_probs=560.5
Q ss_pred chHHHHHHHHHhcchhh-hhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccchhhhccchhhhHH
Q psy6409 1255 KEREGEAIKERYLGLVK-KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG 1333 (1832)
Q Consensus 1255 ~~~el~~l~~~~~~~~~-~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~f~~ 1333 (1832)
.++++..++++|+|..+ ++++.+++++.+|.|+|++.+||+.+++++|+.++..++||+|.++|+|+++|++.++. +.
T Consensus 97 ~~K~~~ai~~rylg~~k~kkkk~r~~~~~kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~-~~ 175 (673)
T KOG0333|consen 97 DEKEVRAIKERYLGEVKPKKKKGRRLNDKKFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSK-YG 175 (673)
T ss_pred HHHHHHHHHHHHhcccCccccccccccccceEEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhh-hh
Confidence 56899999999999988 77888999999999999999999999999999999999999999999999999999888 88
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhHHhhhcccCCCCChhhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHH
Q psy6409 1334 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTE 1413 (1832)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ 1413 (1832)
.+++.+..+.++++++....+..+.+.+..|+|.||+++.+.+|++++|++|+++++|.++|+.+|.|+++|++.+||..
T Consensus 176 ~~~e~r~t~~~ke~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e 255 (673)
T KOG0333|consen 176 EMMEKRRTEDEKEQEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLE 255 (673)
T ss_pred hHhhhhcchhhhhhHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHH
Confidence 88999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHH
Q psy6409 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493 (1832)
Q Consensus 1414 ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa 1493 (1832)
+++++.+.||..|+|||++|||.+++.+|+|++|.||||||++|++|++.+|..+|.+.+......||+++||+|||+||
T Consensus 256 ~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLa 335 (673)
T KOG0333|consen 256 LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELA 335 (673)
T ss_pred HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChH
Q psy6409 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1494 ~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
+||..+..+|+..+|++++.++||.+.+++.+.++.+|+|+||||++|+++|.+.++.+++|.+||+||||+|+|+||++
T Consensus 336 qqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~ 415 (673)
T KOG0333|consen 336 QQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP 415 (673)
T ss_pred HHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 1653 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~ 1653 (1832)
++..|+..||..+..+++........++.++.....++|+++||||||+.++.+++.||.+|..+.++..+.+.+.++|.
T Consensus 416 dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 416 DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheE
Confidence 99999999999999998888888888888888888999999999999999999999999999999999999999999999
Q ss_pred EEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1654 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1654 ~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
++.+.+..|...|..++......|+|||+|+++.|+.||+.|.+.|+.+..+||+.++++|+.+++.|++|..+||||||
T Consensus 496 v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD 575 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD 575 (673)
T ss_pred EEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCc
Q psy6409 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQ 1813 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~ 1813 (1832)
+++||||||+|++||||||++++++|+||||||||+|+.|+|++|+++.|...|++|++++..+..+++|++|.+|+.|+
T Consensus 576 vAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~ 655 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQ 655 (673)
T ss_pred ccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCccccccccccccccC
Q psy6409 1814 HKPGTVMVPKKRREEKIFA 1832 (1832)
Q Consensus 1814 ~~~gti~~~~~~~~~~~~~ 1832 (1832)
+++|+++.|+ ++.++|+|
T Consensus 656 ~K~~~~~~k~-~~~e~i~~ 673 (673)
T KOG0333|consen 656 FKPGTIKAKK-REPETIRY 673 (673)
T ss_pred cccccccccc-cCcccccC
Confidence 9999999776 89999886
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-78 Score=750.38 Aligned_cols=1004 Identities=18% Similarity=0.207 Sum_probs=714.1
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 732 ~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
-..+|.|-..++. |+..+++||..+.++++.+ .|+++|||||+|||+++++.||+.+..+... .+.......+++|
T Consensus 293 iselP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~-dgs~nl~~fKIVY 369 (1674)
T KOG0951|consen 293 ISELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE-DGSVNLAPFKIVY 369 (1674)
T ss_pred ecCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc-ccceecccceEEE
Confidence 3468888888885 7778999999999999986 6899999999999999999999988654331 1222345679999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---ccCCceeEEEec
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDE 887 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~---~l~~~~~lViDE 887 (1832)
++|+++|++.+...|.+...++||+|+..+|+.....+... +++|+|+||++| |.++++.- ..+-++++|+||
T Consensus 370 IAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qie---eTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDE 445 (1674)
T KOG0951|consen 370 IAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE---ETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDE 445 (1674)
T ss_pred EeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhh---cceeEEeccchh-hhhhcccCchhHHHHHHHHhhhh
Confidence 99999999999999999999999999999999987766554 799999999999 99988743 455789999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE-EEEc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIG 966 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~-v~~~ 966 (1832)
.| |++..++|.++.|+.++ .+.........+++++|||+|++.+ .+.....+|.. ++++
T Consensus 446 IH-LLhDdRGpvLESIVaRt------------------~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd 505 (1674)
T KOG0951|consen 446 IH-LLHDDRGPVLESIVART------------------FRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFD 505 (1674)
T ss_pred hh-hcccccchHHHHHHHHH------------------HHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccC
Confidence 99 66678999999999887 3444556677899999999998654 44444444433 4444
Q ss_pred ccCCCCcceEEEEEEcchhhHHHH--------HHHHHHcCCCCCEEEEEcccchHHHHHHHHHH----------------
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKK--------LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---------------- 1022 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~--------L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~---------------- 1022 (1832)
+...+ ..+.|.++.+.+...... .-.++......++||||++|+++..+|+.++.
T Consensus 506 ~syRp-vPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s 584 (1674)
T KOG0951|consen 506 SSYRP-VPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDS 584 (1674)
T ss_pred cccCc-CCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhccc
Confidence 44444 446666666654432222 22345555668999999999999999988752
Q ss_pred ---------------------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE----EcCC
Q psy6409 1023 ---------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYDM 1077 (1832)
Q Consensus 1023 ---------------------~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d~ 1077 (1832)
+.+++++||+||++.+|..+.+.|++|.++|||+|.+++||+|+|+.+++| .||+
T Consensus 585 ~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~p 664 (1674)
T KOG0951|consen 585 ASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDP 664 (1674)
T ss_pred chhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCc
Confidence 136789999999999999999999999999999999999999999999999 5766
Q ss_pred ------CCCHhHHHHHhcccccCCCC--cEEEEEecCC---------------CchHHHHHHHHHhcCCccccccccccc
Q psy6409 1078 ------AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD---------------DSHLFYDLKQMMISSPVTGRAGKEGLA 1134 (1832)
Q Consensus 1078 ------p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~---------------d~~~~~~l~~~l~~~~~~~~~~~~~~~ 1134 (1832)
+.++.+.+||+|||||.+.+ |.++++...+ +++++..+.+.+|++++.| +.+..++
T Consensus 665 ekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~ 743 (1674)
T KOG0951|consen 665 EKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDA 743 (1674)
T ss_pred ccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHH
Confidence 45899999999999998766 6666665554 6788888999999999999 9999999
Q ss_pred ccccccCCchhHHHHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCccccc
Q psy6409 1135 VSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSP 1214 (1832)
Q Consensus 1135 v~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1214 (1832)
+.|+.+++..+...-...+........+..+....+........... .......++..+....+..|+.++.
T Consensus 744 ~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~--------~~~li~yd~~s~~~~~telg~ias~ 815 (1674)
T KOG0951|consen 744 VDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLD--------KAGLIKYDRKSGAIQATELGRIASS 815 (1674)
T ss_pred HhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHh--------hcCccccccccCcccchhhccccce
Confidence 99998777655544444433221111122222222111110000000 0112223333444556678888888
Q ss_pred ccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHH----------------------HHhcch-
Q psy6409 1215 QCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIK----------------------ERYLGL- 1269 (1832)
Q Consensus 1215 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~----------------------~~~~~~- 1269 (1832)
||..+++ ...+-.+.+.+...++++.|+.+++|.-+.+|+++ .||..+. +.|.+.
T Consensus 816 yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~l 895 (1674)
T KOG0951|consen 816 YYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQL 895 (1674)
T ss_pred eeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhc
Confidence 8888888 45566778888889999999999999999999887 6777644 334333
Q ss_pred ---------------hhhhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccchhhhcc---chhhh
Q psy6409 1270 ---------------VKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKR---DQSKF 1331 (1832)
Q Consensus 1270 ---------------~~~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~f 1331 (1832)
+.++|++|+++++..+.+|++.+.-++++|+++..++|+.+-....++|+.....++ ....|
T Consensus 896 k~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~ 975 (1674)
T KOG0951|consen 896 KLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPW 975 (1674)
T ss_pred ccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcc
Confidence 225789999999999999999999999999999999999988888888875332211 22222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhh-------H---------------HhhhcccCCCC--------------------
Q psy6409 1332 YGEMLEKRRTEAEKEQEKVRLKKVKK-------R---------------EEKQKWDDRHW-------------------- 1369 (1832)
Q Consensus 1332 ~~~~~~~~~~~~~~~~~~~~~~~~~k-------~---------------~~~~~~~~~~~-------------------- 1369 (1832)
.........+..+.....+..+...+ . .+.....+..|
T Consensus 976 ~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dg 1055 (1674)
T KOG0951|consen 976 GRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDG 1055 (1674)
T ss_pred hhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCc
Confidence 22211111111111110000111110 0 00000011222
Q ss_pred ---------------------------ChhhhcccCHHHHHHHHhcccceecCCCCCCCcCC---cccC-CCCHHHHHHH
Q psy6409 1370 ---------------------------TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRN---WKEA-SLPTEILEII 1418 (1832)
Q Consensus 1370 ---------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~---~~e~-~L~~~ll~~l 1418 (1832)
++..+-.+-+..|..-....++.+.+..+|..... |-++ ++|..-+.+-
T Consensus 1056 e~il~~e~~~~~k~~~~v~ft~~~~~~pP~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~ 1135 (1674)
T KOG0951|consen 1056 EKILHHEFFLLKKKEHTVNFTVPLFEPPPQYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNP 1135 (1674)
T ss_pred cceeeeeeEEeccCceEEEEEeecCCCCCceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCc
Confidence 11222333444555555555555555554432221 2111 2222211111
Q ss_pred H-HcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1419 E-KIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1419 ~-~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
. .-=|...+|+|.|+++.+++. ++++++||+|||||+|+.++++. .....++++++|.-+.+..+
T Consensus 1136 ~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------------~~~~~~~vyi~p~~~i~~~~ 1202 (1674)
T KOG0951|consen 1136 SFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------------PDTIGRAVYIAPLEEIADEQ 1202 (1674)
T ss_pred chhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------------CccceEEEEecchHHHHHHH
Confidence 1 112345599999999999865 67999999999999999999874 23567899999999999877
Q ss_pred HHHHH-HhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH
Q psy6409 1497 EEETN-KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1497 ~~~~~-~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
+..|. +|....|..++.++|..+.+.. +....+|+|+||++|..+ + ..+++++.|.||+|.+. ..+++.+
T Consensus 1203 ~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~ig-g~~g~v~ 1273 (1674)
T KOG0951|consen 1203 YRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIG-GVYGAVY 1273 (1674)
T ss_pred HHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhc-ccCCceE
Confidence 76665 5667789999999998886644 445789999999999766 2 68899999999999554 4456666
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE-
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV- 1654 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~- 1654 (1832)
+.|++ +... ..+..+..+++.+|..+.+.-.. .++.....+++.+..++.+...++-
T Consensus 1274 evi~S-~r~i------------------a~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~ 1331 (1674)
T KOG0951|consen 1274 EVICS-MRYI------------------ASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQS 1331 (1674)
T ss_pred EEEee-HHHH------------------HHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEE
Confidence 66655 3211 01222556899999888776443 3344445555555555555443332
Q ss_pred -EEc-----chhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHH------------------------cCCcEE
Q psy6409 1655 -YIL-----SEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEK------------------------LGYNAC 1703 (1832)
Q Consensus 1655 -~~~-----~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~------------------------~~~~v~ 1703 (1832)
... ...+-...+.++.+.. ..+|.+||++++++|..++..|-. +..+|+
T Consensus 1332 ~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg 1411 (1674)
T KOG0951|consen 1332 VDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG 1411 (1674)
T ss_pred eccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc
Confidence 111 1122333444455443 678999999999999998876532 123444
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC------CCCCHHHHHHHhcccccCCCcc
Q psy6409 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD------MAKSIEDYTHRIGRTGRAGKEG 1773 (1832)
Q Consensus 1704 ~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d------~P~s~~~yiQRiGRaGR~g~~G 1773 (1832)
|-+++..+...+...|..|.++|+|...- .+|+-....-+||. || .+.++.+.+||+|+|.| .|
T Consensus 1412 --~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~ 1485 (1674)
T KOG0951|consen 1412 --HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AG 1485 (1674)
T ss_pred --ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---Cc
Confidence 99999999999999999999999999877 89998866555553 33 24469999999999988 68
Q ss_pred EEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCcccccc
Q psy6409 1774 LAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPK 1823 (1832)
Q Consensus 1774 ~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~~~~ 1823 (1832)
.|+++++..++.+|+++...+.|.+ +.+...|++++|++++.+||.+|+
T Consensus 1486 k~vi~~~~~~k~yykkfl~e~lPve-s~lq~~lhd~~n~ei~~~tienkq 1534 (1674)
T KOG0951|consen 1486 KCVIMCHTPKKEYYKKFLYEPLPVE-SHLQHCLHDNFNAEIVTKTIENKQ 1534 (1674)
T ss_pred cEEEEecCchHHHHHHhccCcCchH-HHHHHHHHhhhhHHHHHHHHHhHH
Confidence 9999999999999999999999997 999999999999999999999765
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-75 Score=647.07 Aligned_cols=459 Identities=37% Similarity=0.682 Sum_probs=413.8
Q ss_pred ccCCCh-hhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEE
Q psy6409 691 DRHWTE-KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769 (1832)
Q Consensus 691 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvI 769 (1832)
...|.. .-+..|++++.+..|..++|.+.|..+|.||.+|.++.+|..+++.|++.|+..|||||.+.+|.+++|||+|
T Consensus 132 ~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmI 211 (610)
T KOG0341|consen 132 KTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMI 211 (610)
T ss_pred hhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCcee
Confidence 356764 3577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC------CCeEEEEEcCC
Q psy6409 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL------GIRTVLVVGGL 843 (1832)
Q Consensus 770 v~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~------~i~v~~~~Gg~ 843 (1832)
++|-||||||++|+||++.+.++..-... -....||..||+||+||||.|++..+..+...+ .++.+.++||.
T Consensus 212 GIAfTGSGKTlvFvLP~imf~LeqE~~lP-f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~ 290 (610)
T KOG0341|consen 212 GIAFTGSGKTLVFVLPVIMFALEQEMMLP-FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGV 290 (610)
T ss_pred eEEeecCCceEEEeHHHHHHHHHHHhcCc-cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCc
Confidence 99999999999999999987654322111 134679999999999999999999998875433 47889999999
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHH
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 923 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~ 923 (1832)
+..+|...++.|.||+|+|||+|.|+|..+.+.|.-|+||++||||+|+|+||+.+++.|+..+.
T Consensus 291 ~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK--------------- 355 (610)
T KOG0341|consen 291 PVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK--------------- 355 (610)
T ss_pred cHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCE
Q psy6409 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003 (1832)
Q Consensus 924 ~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~v 1003 (1832)
..+|+++||||||..++.|+++-+..|+.+.++..+..+.++.|.+.++..++|+..|+++|+. ..+|+
T Consensus 356 ----------~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK-T~PpV 424 (610)
T KOG0341|consen 356 ----------GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK-TSPPV 424 (610)
T ss_pred ----------hhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc-CCCce
Confidence 3589999999999999999999999999999999999999999999999999999999999985 45689
Q ss_pred EEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhH
Q psy6409 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083 (1832)
Q Consensus 1004 IVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~ 1083 (1832)
||||..+..++.++++|-..|+.++.+|||..|++|...++.|+.|+.+||||||+++.|+|+|+|.||||||+|..+++
T Consensus 425 LIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIEN 504 (610)
T KOG0341|consen 425 LIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIEN 504 (610)
T ss_pred EEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCcccccccccccccccccCCchhHHHHHHhhhcCCCCCCch
Q psy6409 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPP 1163 (1832)
Q Consensus 1084 yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 1163 (1832)
|+||+|||||.|+.|.|.+|++...+ ..++.||+.+|.++. ..+||
T Consensus 505 YVHRIGRTGRsg~~GiATTfINK~~~---------------------------------esvLlDLK~LL~Eak-Q~vP~ 550 (610)
T KOG0341|consen 505 YVHRIGRTGRSGKTGIATTFINKNQE---------------------------------ESVLLDLKHLLQEAK-QEVPP 550 (610)
T ss_pred HHHHhcccCCCCCcceeeeeecccch---------------------------------HHHHHHHHHHHHHhh-ccCCH
Confidence 99999999999999999999998742 456788999998876 47899
Q ss_pred hhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCcccccccccCcccccccCCCccccchhH
Q psy6409 1164 ELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSACSLPRSHKSSSL 1237 (1832)
Q Consensus 1164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 (1832)
.|..+...... .....+ .|..+|.|||+.+|++.+||+++.+++..+
T Consensus 551 ~L~~L~~~~E~-~~~a~~--------------------------~~~kGCayCgGLGHRItdCPKle~~~~k~~ 597 (610)
T KOG0341|consen 551 VLAELAGPMEE-ETIADA--------------------------GGEKGCAYCGGLGHRITDCPKLEAQQNKQI 597 (610)
T ss_pred HHHHhCCCccc-cccccC--------------------------CCccccccccCCCcccccCchhhhhcchhh
Confidence 98776554332 111111 356899999999999999999999876554
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=705.39 Aligned_cols=874 Identities=19% Similarity=0.208 Sum_probs=600.0
Q ss_pred cCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
++|..++.+|+.++|.++. +.|+|||||||||||.+|+|.||+.|.+ +........++.+++||+||++||.++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~--~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE--HEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh--hccccccccCCceEEEEechHHHHHHHHHH
Confidence 5889999999999999996 6899999999999999999999999976 223344567889999999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc----ccCCceeEEEecchhhhcCCChHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----VLNQCTYIVLDEADRMIDMGFEPDV 900 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~----~l~~~~~lViDEaH~l~d~gf~~~i 900 (1832)
+.+.+.++|++|..++|++...+.... .|+|||+||++| |+++|+.. ..+.+.+|||||+| |+...++|.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei~---~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEIA---DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHHH---hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 999999999999999999998776533 799999999999 99988764 56789999999999 6677899999
Q ss_pred HHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC-cEEEEcccCCCCcceEEEE
Q psy6409 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIV 979 (1832)
Q Consensus 901 ~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p-~~v~~~~~~~~~~~i~q~~ 979 (1832)
+.|++++ ++.+++.+..+++|++|||+|+.. +++...-.+| ..++..+....+..+.+.+
T Consensus 259 EtiVaRt------------------lr~vessqs~IRivgLSATlPN~e-DvA~fL~vn~~~glfsFd~~yRPvpL~~~~ 319 (1230)
T KOG0952|consen 259 ETIVART------------------LRLVESSQSMIRIVGLSATLPNYE-DVARFLRVNPYAGLFSFDQRYRPVPLTQGF 319 (1230)
T ss_pred HHHHHHH------------------HHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCCCccceeeecccccccceeeeE
Confidence 9999987 667778888999999999999854 4665554442 3333333333444566666
Q ss_pred EEcchh-----------hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-----------------------CC
Q psy6409 980 YILSEQ-----------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-----------------------GY 1025 (1832)
Q Consensus 980 ~~~~~~-----------~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~-----------------------g~ 1025 (1832)
+..... .....+.+.+. .+.+++|||+++..+..+|+.|.+. ..
T Consensus 320 iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~ 397 (1230)
T KOG0952|consen 320 IGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQ 397 (1230)
T ss_pred EeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHh
Confidence 655433 12233444443 4678999999999999999998543 13
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE----EcCCCC------CHhHHHHHhcccccCC
Q psy6409 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYDMAK------SIEDYTHRIGRTGRAG 1095 (1832)
Q Consensus 1026 ~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d~p~------s~~~yvQr~GRaGR~g 1095 (1832)
+.+++|+||...+|..+.+.|..|.++|||||.+++||+|+|+..++| .||.-+ ++.+.+|.+|||||++
T Consensus 398 g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 398 GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 578899999999999999999999999999999999999999988887 466544 6889999999999976
Q ss_pred C--CcEEEEEecCC---------------CchHHHHHHHHHhcCCcccccccccccccccccCCchhHHHHHHhhhcCCC
Q psy6409 1096 K--EGLAVSFCTKD---------------DSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1158 (1832)
Q Consensus 1096 ~--~G~ai~~~~~~---------------d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~~~ 1158 (1832)
. .|.++++.+.+ |++++..|.++||+|+.+||+.++.+||.|+.+++..+.+.-.++.+.-..
T Consensus 478 Fd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~ 557 (1230)
T KOG0952|consen 478 FDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISY 557 (1230)
T ss_pred CCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhh
Confidence 4 49999999988 889999999999999999999999999999998887765544444332111
Q ss_pred --CCCchhhcCCCcc-c-CCCCcccccCCccccCCChhhhccccccccccccccCcccccccccCcc-cccccCCCcccc
Q psy6409 1159 --STCPPELLNHPDA-Q-HKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSS-RFSACSLPRSHK 1233 (1832)
Q Consensus 1159 --~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1233 (1832)
....|.+..|... | .+....... ...+.+........+.+||.++.||+.+.+ .+++.....++.
T Consensus 558 ~~l~~dp~l~s~~~~l~~~~~~~L~~~----------qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~s 627 (1230)
T KOG0952|consen 558 EELEPDPRLESHRRELCLVAAMELDKV----------QMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYS 627 (1230)
T ss_pred hcccCCchHHHHHHHHHHHHHHHhhhh----------heEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCC
Confidence 1122333322211 0 000000000 112222333445566789999999999999 666777778999
Q ss_pred chhHhhhhccCchhhhhhcccch-HHHHHHHHHhcchhh------------------------------------hhcce
Q psy6409 1234 SSSLLSRYSEQDPEEKELNKDKE-REGEAIKERYLGLVK------------------------------------KKRRV 1276 (1832)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~~~~~~~------------------------------------~~~~~ 1276 (1832)
..++|++.+.++||..+++|++| +||+.|...+++... .+|..
T Consensus 628 e~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ 707 (1230)
T KOG0952|consen 628 EDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRIS 707 (1230)
T ss_pred HHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccccchhHHHHHHhhhhccceeeeeeccCcccccccHHHHH
Confidence 99999999999999999999888 899988866443211 12334
Q ss_pred ecccCcceeeccCCCcCCccccchhhhcccccccccccccccc-chhhhccchhhhHHHHHHhhhhhHHHHHH-HHHHHH
Q psy6409 1277 RRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI-DIKAQKRDQSKFYGEMLEKRRTEAEKEQE-KVRLKK 1354 (1832)
Q Consensus 1277 ~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~ 1354 (1832)
+.+++..+.-.|.......+.+|+.++.++|..+.....+.+. .++.+... ....+... ..++.-.. ....+.
T Consensus 708 ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~~~~~~~~----~l~~L~~~-~~g~~w~~~~~~~k~ 782 (1230)
T KOG0952|consen 708 RALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLNRKERKKL----TLLLLRKD-ELGELWHNVPYGLKQ 782 (1230)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccchhhhhcc----hHHhhhhh-hhccccccCchhhhh
Confidence 4444555555666666666677777777777654333333222 11111000 00000000 00000000 000000
Q ss_pred hhh------------------HHhhhcccCCCCChhhhcc----------------------------------------
Q psy6409 1355 VKK------------------REEKQKWDDRHWTEKSLDE---------------------------------------- 1376 (1832)
Q Consensus 1355 ~~k------------------~~~~~~~~~~~~~~~~~~~---------------------------------------- 1376 (1832)
... +-....+.+..|.+.....
T Consensus 783 l~~ip~v~v~a~~~p~t~~vlri~~~~~~~f~w~~~~hg~~g~~i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipi 862 (1230)
T KOG0952|consen 783 LSGIPLVNVEALIQPITRNVLRIEVAITPDFEWNDGIHGKAGQPIFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPI 862 (1230)
T ss_pred hccCCceehhhhhccchhhhheeeeccCCceEEecccccccCceeEeecCCCCcceeeeeehhhhhhhhhhhheeEEeec
Confidence 000 0000111112221110000
Q ss_pred -----------cCHHHHHHHHhcccceecCCCCCCCcCCcccC-CCCHHHHHHHH----HcCCCCCcHHHHHHHHHHhc-
Q psy6409 1377 -----------MTERDWRIFREDYSITIKGGKVPDPVRNWKEA-SLPTEILEIIE----KIGYAEPTPIQRQAIPIGLQ- 1439 (1832)
Q Consensus 1377 -----------~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~-~L~~~ll~~l~----~~g~~~ptpiQ~~ai~~il~- 1439 (1832)
.....|..+..-..+.+....+|.......++ .+.+....+|. ..-+..++|+|.+.|..++.
T Consensus 863 s~pLps~~~~~~~s~~~l~~e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~t 942 (1230)
T KOG0952|consen 863 SDPLPSQIRHRAVSDNWLGAETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHT 942 (1230)
T ss_pred ccCCccceEEeeecccccCCceeccccccceeccccccccccccccCCCcchhhccccHHHhhcccCCccceEEEEEeec
Confidence 00011111111112222222223222222111 12222222222 22344778899998887774
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
..++++.+|||||||++|.++++..+... .+.+|+|++|.++|+....+.|.+.....|++++.++|+..
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~----------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~ 1012 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYY----------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVT 1012 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccC----------CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccC
Confidence 46899999999999999999998766553 35789999999999999888887765555999999999999
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhH
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 1597 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~ 1597 (1832)
++.... ..++|+|+||++|.++.++|. -.+++|+++|+||.| +++.+++|.++.|.+.+...+.
T Consensus 1013 pd~~~v---~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h-llg~~rgPVle~ivsr~n~~s~---------- 1078 (1230)
T KOG0952|consen 1013 PDVKAV---READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH-LLGEDRGPVLEVIVSRMNYISS---------- 1078 (1230)
T ss_pred CChhhe---ecCceEEcccccccCccccccchhhhccccceeecccc-cccCCCcceEEEEeeccccCcc----------
Confidence 874322 368999999999999998654 578999999999999 6677888999888877764221
Q ss_pred HHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceE-------EEEEEcchhhHHHHHHHHH
Q psy6409 1598 NKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIE-------QIVYILSEQDKRKKLMEVL 1670 (1832)
Q Consensus 1598 ~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~-------q~~~~~~~~~k~~~l~~~l 1670 (1832)
......+.+++|..+.+.- ++ ..|++-+..+...+...+.+... +++++.+..++.+.+..+.
T Consensus 1079 --------~t~~~vr~~glsta~~na~-dl-a~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik 1148 (1230)
T KOG0952|consen 1079 --------QTEEPVRYLGLSTALANAN-DL-ADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIK 1148 (1230)
T ss_pred --------ccCcchhhhhHhhhhhccH-HH-HHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHh
Confidence 1224466777766554432 22 33444333233322333332221 3566667778888888888
Q ss_pred HhCCCCcEEEEECchhHHHHHHHHHH
Q psy6409 1671 NRGVKKPVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1671 ~~~~~~~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
...+..|+|||+.++++....+..|.
T Consensus 1149 ~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1149 THSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred cCCCCCceEEEeecccccccchHhHH
Confidence 88899999999999999888777664
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=649.03 Aligned_cols=364 Identities=45% Similarity=0.769 Sum_probs=341.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhc-hhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-PKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~-~~~~~~~~~~~~~ 806 (1832)
..|++++|++.+..+++..||..|||||.++||.+++|+|+|++|.||||||++|+||++.++... +. .....+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~----~~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK----LSRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----ccCCCCC
Confidence 378889999999999999999999999999999999999999999999999999999999999752 22 2345799
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
.+|||+||||||.|+...+.+++..+++++.|++||.+...|...+.++++|+|||||||+|+++.+.+.|++|.|+|+|
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|+|+||+++++.|+..++. ..+|++++|||+|..+..++..|+.+|..+.++
T Consensus 247 EADrMldmGFe~qI~~Il~~i~~------------------------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIPR------------------------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcCC------------------------CcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 99999999999999999999952 235999999999999999999999999999998
Q ss_pred ccC--CCCcceEEEEEEcchhhHHHHHHHHHHcC---CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 967 SVG--KPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041 (1832)
Q Consensus 967 ~~~--~~~~~i~q~~~~~~~~~k~~~L~~~l~~~---~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 1041 (1832)
... ....++.|.+..+....|...|..+|... ..+++||||+|++.|+.|+..|...++++..|||+++|.+|..
T Consensus 303 ~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 303 NKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred chhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 654 66788999999999999998888888765 5679999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1042 il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
+++.|++|++.||||||+|+||||||+|++|||||+|.++++|+||+|||||+|+.|.|++|++..+......+.+.+
T Consensus 383 ~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 383 VLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred HHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777776654
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=597.78 Aligned_cols=362 Identities=40% Similarity=0.654 Sum_probs=346.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
...+|.++++.+.+++++.+.||+.||+||+++||.++.|+|+|+.|+||||||.+|+|||++.+.+.| ..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---------~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---------KL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---------CC
Confidence 456899999999999999999999999999999999999999999999999999999999999987643 34
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHH-ccccccCCceeEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLNQCTYIV 884 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~-~~~~~l~~~~~lV 884 (1832)
+++|||+||||||.||.+.|..++...|+++++++||++...|...+.+.+||||||||+|.+++. .+.+.+.+++++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999998 6778999999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
+||||+++|++|.+.+..|+..+| ..+|+++||||||..+.++....+.+|..+.
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip-------------------------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIP-------------------------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcC-------------------------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 999999999999999999999997 3489999999999999999999999999999
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
........+.+.|.+..++...|...|+.+++...+.++||||++...+..++-.|..+|+.+..+||.|++..|..+++
T Consensus 265 ~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~ 344 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALN 344 (476)
T ss_pred ccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
.|++|.++||||||+++||+|||.|++|||||+|.+..+|+||+||+||+|.+|.+|+|++.-|...+..|+..+-.
T Consensus 345 ~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 345 KFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGK 421 (476)
T ss_pred HHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888876543
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=625.87 Aligned_cols=381 Identities=45% Similarity=0.762 Sum_probs=357.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh-CchhhcccccCCCc
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS-LPKIARMEDADQGP 1481 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~-~p~~~~~~~~~~~~ 1481 (1832)
..|.+++|++.+..+++..||..|||||.++||.++.|+|++++|.||||||++|++|++.++.. .+.. ....+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~----~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKL----SRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccc----cCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999876 3322 345799
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
.+|||+||||||.|+...+..++..++++++|++||.+...|...+.++++|+|||||+|.+++..+.+.+++|.|+|+|
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|+++||+++++.|+..+|. ..+|++++|||+|..+..++..|+.+|..+.++
T Consensus 247 EADrMldmGFe~qI~~Il~~i~~------------------------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIPR------------------------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcCC------------------------CcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 99999999999999999999952 234899999999999999999999999999988
Q ss_pred ccC--CCCcceEEEEEEcchhhHHHHHHHHHHhC---CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1642 SVG--KPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1642 ~~~--~~~~~i~q~~~~~~~~~k~~~l~~~l~~~---~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
... ....++.|++..++...|...|..+|... ...++||||+|++.|+.|+..|...++++..+||+++|.+|..
T Consensus 303 ~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 303 NKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred chhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 664 56788999999999999999988888765 5678999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
+++.|++|+..||||||+++||||||+|++|||||+|.++++||||+|||||+|+.|.|++|++..+......+...+..
T Consensus 383 ~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331|consen 383 VLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred HHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCChhhcCCCCC
Q psy6409 1797 SPVSTCPPELLNHPDA 1812 (1832)
Q Consensus 1797 ~~~~~~~~~L~~h~~a 1812 (1832)
.+ +.+|+.|......
T Consensus 463 ~~-q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 463 AG-QTVPPDLLEYARV 477 (519)
T ss_pred cc-CCCChHHHHHHhh
Confidence 86 8999998766443
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=569.01 Aligned_cols=363 Identities=40% Similarity=0.655 Sum_probs=347.0
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
...+|.++++.+.+++++.+.||..||+||.++||.++.|+|+|+.|.||||||.+|+|||++.+...| ..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---------~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---------KL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---------CC
Confidence 456899999999999999999999999999999999999999999999999999999999999887755 35
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc-cccccCCceeEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIV 1559 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v~llV 1559 (1832)
+++|||+||||||.||...+..++..+|+++.++.||.+...+...+...++|||||||+|.+++.+ +.+.+.++.++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999999999984 678899999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
+||||+++++.|.+.+..|+..+| ..+|+++||||||..+..+....+.+|..+.
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip-------------------------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIP-------------------------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcC-------------------------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 999999999999999999999997 4579999999999999999999999999999
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.......+.+.|.|..++...|..+|+.+++.....++||||++..+++.++-.|..+|+.+..+||+|++..|..+++
T Consensus 265 ~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~ 344 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALN 344 (476)
T ss_pred ccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHH
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1797 (1832)
.|++|..+||||||+++||+|||.|++|||||+|.+..+||||+||+||+|..|.+++|++.-|.+.+..++..+-..
T Consensus 345 ~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkk 422 (476)
T KOG0330|consen 345 KFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKK 422 (476)
T ss_pred HHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988766543
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=582.89 Aligned_cols=360 Identities=39% Similarity=0.606 Sum_probs=335.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
..+|.+++|+..+++++..+||..|||||.++||.++-|+|+++||.||||||.+|+||+|..++--|. .....
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------~~~~T 253 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------KVAAT 253 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------cCcce
Confidence 458999999999999999999999999999999999999999999999999999999999998865443 23567
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lVi 885 (1832)
++|||+||||||.|++.++++++....|.++.++||.+...|...|+..++|||+|||+|+|+|.+. .+.++++.+|||
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999999999765 578999999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||+|++.||..++..|+..+| +.+|+++|||||+..+..++...|+.|+.+++
T Consensus 334 DEADRMLeegFademnEii~lcp-------------------------k~RQTmLFSATMteeVkdL~slSL~kPvrifv 388 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLCP-------------------------KNRQTMLFSATMTEEVKDLASLSLNKPVRIFV 388 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-------------------------ccccceeehhhhHHHHHHHHHhhcCCCeEEEe
Confidence 99999999999999999999987 45899999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEEcc---hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILS---EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~---~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~i 1042 (1832)
+........+.|.+.-+. +..+...|..++.......+|||+.|++.|..+.-.|-.+|++++-+||.++|.+|...
T Consensus 389 d~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 389 DPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred CCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 998888888888776543 34566677777777788899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
++.|++++++||||||+++|||||++|.+||||++|.++..|+||+|||+|+|+.|.+++|+..+|..++..+..
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999887776654
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=557.23 Aligned_cols=395 Identities=43% Similarity=0.699 Sum_probs=353.1
Q ss_pred hhhhhhccHHHHHHHH-hhccceecC------CCCCCcccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCc
Q psy6409 696 EKSLDEMTERDWRIFR-EDYSITIKG------GKVPDPVRNWKE-ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD 767 (1832)
Q Consensus 696 ~~~~~~~~~~~~~~~~-~~~~i~~~~------~~~p~p~~~f~~-~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grd 767 (1832)
......|++.+...++ +.++|.+.. ..+|+|..+|++ ++-.+++++.|++.||.+|||||++|||.+++|.|
T Consensus 180 ~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~D 259 (629)
T KOG0336|consen 180 SNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGID 259 (629)
T ss_pred CchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcc
Confidence 3455667877776555 567887642 358999999976 57788999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
+|++|.||+|||++|++|-+.+|...|... ....+|.+|++.|||+||.|+.-+..++.. -|.+.+|++||.+..+
T Consensus 260 liGVAQTgtgKtL~~L~pg~ihi~aqp~~~---~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 260 LIGVAQTGTGKTLAFLLPGFIHIDAQPKRR---EQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNE 335 (629)
T ss_pred eEEEEecCCCcCHHHhccceeeeeccchhh---hccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchh
Confidence 999999999999999999998887655432 256789999999999999999999988743 4889999999999999
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~ 927 (1832)
|...++.+.+|+++|||+|.++...+.++|..+.||||||||+|+||||+|++..|+--+.
T Consensus 336 qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------- 396 (629)
T KOG0336|consen 336 QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------- 396 (629)
T ss_pred HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999986553
Q ss_pred hhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCC-cceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEE
Q psy6409 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVII 1005 (1832)
Q Consensus 928 ~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~-~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIV 1005 (1832)
+++|+++.|||+|+.+..++..|+.+|..++++...... ..+.|.+....+..|...+..++... ...++||
T Consensus 397 ------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIi 470 (629)
T KOG0336|consen 397 ------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVII 470 (629)
T ss_pred ------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEE
Confidence 458999999999999999999999999999999887643 56788886667777777666666653 5678999
Q ss_pred EEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHH
Q psy6409 1006 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yv 1085 (1832)
||.++..|+.|...|...|+.+..+||+-.|.+|+.+++.|++|+++||||||+++||||+|+|+||+|||+|.+++.|+
T Consensus 471 Fv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYV 550 (629)
T KOG0336|consen 471 FVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYV 550 (629)
T ss_pred EEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1086 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1086 Qr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||+||+||+|+.|++++|++.+|..+...|-+.|
T Consensus 551 HRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred HHhcccccCCCCcceEEEEehhhHHHHHHHHHHH
Confidence 9999999999999999999999977777766654
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=562.83 Aligned_cols=415 Identities=40% Similarity=0.726 Sum_probs=383.6
Q ss_pred CCCCh-hhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEE
Q psy6409 1367 RHWTE-KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445 (1832)
Q Consensus 1367 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii 1445 (1832)
..|.+ ..+..|++++....+..+.|.+.|..+|+|+.+|.++.+|..+++.|++.|+.+|||||.|.+|.+++|+|+|+
T Consensus 133 T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIG 212 (610)
T KOG0341|consen 133 TAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIG 212 (610)
T ss_pred hccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceee
Confidence 46754 56778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCC------CCeEEEEECCcc
Q psy6409 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL------GIRTVLVVGGLS 1519 (1832)
Q Consensus 1446 ~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~------g~~v~~l~gg~~ 1519 (1832)
+|-||||||++|.+|++-..++.... -.-....||..|||||+||||.|+++.+..++..+ .++...+.||.+
T Consensus 213 IAfTGSGKTlvFvLP~imf~LeqE~~-lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 213 IAFTGSGKTLVFVLPVIMFALEQEMM-LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred EEeecCCceEEEeHHHHHHHHHHHhc-CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 99999999999999998665542211 11234679999999999999999999998875433 478889999999
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHH
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK 1599 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~ 1599 (1832)
..++...++.|.+|+|+|||+|.++|....+.+.-|.|+++||||+|+++||.+.+..|++++.
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK---------------- 355 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK---------------- 355 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEE
Q psy6409 1600 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVI 1679 (1832)
Q Consensus 1600 l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vI 1679 (1832)
..+|+++||||||..++.+++.-+..|+.++++..+..+.++.|-+.++....|..+|++.|.+. ..|+|
T Consensus 356 ---------~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT-~PpVL 425 (610)
T KOG0341|consen 356 ---------GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVL 425 (610)
T ss_pred ---------hhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC-CCceE
Confidence 45899999999999999999999999999999999999988888888899999999999988754 57899
Q ss_pred EEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHH
Q psy6409 1680 IFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759 (1832)
Q Consensus 1680 VFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~y 1759 (1832)
|||..+..++.+.++|--.|..+..+|||..|++|...++.|+.|+-+||||||+++.|+|+|++.+|||||||..+++|
T Consensus 426 IFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENY 505 (610)
T KOG0341|consen 426 IFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENY 505 (610)
T ss_pred EEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcCCCCCCChhhcCC
Q psy6409 1760 THRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPELLNH 1809 (1832)
Q Consensus 1760 iQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~~L~~h 1809 (1832)
+|||||+||.|+.|.|.+|++.. +...+-+|+.++.+.. +.+||.|...
T Consensus 506 VHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~Eak-Q~vP~~L~~L 555 (610)
T KOG0341|consen 506 VHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAK-QEVPPVLAEL 555 (610)
T ss_pred HHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhh-ccCCHHHHHh
Confidence 99999999999999999999986 6789999999999986 8999998643
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=621.69 Aligned_cols=363 Identities=44% Similarity=0.701 Sum_probs=338.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
..|++++|++.++++|.+.||..|||||.++||.++.|+|++++|+||||||++|+||+++.|.... .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~- 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVS- 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCc-
Confidence 7899999999999999999999999999999999999999999999999999999999999875310 011112
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+|||+||||||.|+++.+..++... ++++++++||.+...|...+..+++|||||||||+|++.++.+.++.+.++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999999988 799999999999999999999899999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|+++||.+++..|+..+|. .+|+++||||+|..+..+++.++.+|..+.+.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~-------------------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~ 236 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPP-------------------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVS 236 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCc-------------------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEc
Confidence 99999999999999999999972 48999999999999999999999999988888
Q ss_pred ccCC--CCcceEEEEEEcchhh-HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 967 SVGK--PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 967 ~~~~--~~~~i~q~~~~~~~~~-k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
.... ....+.|.++.+.... |...|..++......++||||+++..|+.|+..|...|+.+..+||+|+|.+|..++
T Consensus 237 ~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 237 VEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred cccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 5544 7788999999998766 999999999988777899999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHHhcC
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~ 1122 (1832)
+.|++|.++||||||+++||||||+|++|||||+|.+.++|+||+|||||+|..|.+++|+++. |...+..+...+...
T Consensus 317 ~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 317 EKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 888888888875443
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=563.55 Aligned_cols=396 Identities=42% Similarity=0.687 Sum_probs=371.8
Q ss_pred ChhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecC
Q psy6409 695 TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 774 (1832)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apT 774 (1832)
+..++..|+..+...++..+++.+.|...|.|+.+|+.+|+.+.|+.++.+..|.+|||||.+++|.++.|+|||.+|.|
T Consensus 190 e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAkt 269 (731)
T KOG0339|consen 190 EHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKT 269 (731)
T ss_pred ChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeec
Confidence 34567778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhc
Q psy6409 775 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854 (1832)
Q Consensus 775 GSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~ 854 (1832)
|||||.+|+.|++.+|...+.+. ...||.+||+||||+||.||+.++++|++.+|++++++|||.+..+|...|..
T Consensus 270 gSgktaAfi~pm~~himdq~eL~----~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~ 345 (731)
T KOG0339|consen 270 GSGKTAAFIWPMIVHIMDQPELK----PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE 345 (731)
T ss_pred cCcchhHHHHHHHHHhcchhhhc----CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc
Confidence 99999999999999998766543 36799999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccc
Q psy6409 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 934 (1832)
Q Consensus 855 ~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~ 934 (1832)
++.|||||||||++++.-+.+++.+++||||||||+|+++||+++++.|..++. +
T Consensus 346 g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir-------------------------p 400 (731)
T KOG0339|consen 346 GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR-------------------------P 400 (731)
T ss_pred CCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC-------------------------C
Confidence 999999999999999999999999999999999999999999999999998874 4
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHc-CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNR-GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~ 1012 (1832)
.+|+++||||++..++.+++.+|.+|+.+..+..+..+..|+|.+.++. +..|+..|+.-|-. ...+++||||..+..
T Consensus 401 drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 401 DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKAD 480 (731)
T ss_pred cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCC
Confidence 5899999999999999999999999999999999999999999998885 45677777766554 356789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccc
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaG 1092 (1832)
++.++..|...++++..+||+|.|.+|.+++..|+.+...||||||+++||+|||++..|||||+..+++.|+||+||+|
T Consensus 481 ~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 481 AEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred HHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1093 R~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|+|..|.+++++|+.|..+.-.|.+.|
T Consensus 561 Rag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 561 RAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred cccccceeeEEechhhHHHhhHHHHHH
Confidence 999999999999999988877777654
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=618.14 Aligned_cols=396 Identities=47% Similarity=0.759 Sum_probs=359.3
Q ss_pred ChhhhhhccHHHHHHHHhhcccee-cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEec
Q psy6409 695 TEKSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 773 (1832)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~ap 773 (1832)
....+..|++++++.+++..+|.+ .|..+|.|+.+|++++||+.++++|.+.||.+|||||.++||.+++|+|+|++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~Ap 175 (545)
T PTZ00110 96 EHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAE 175 (545)
T ss_pred CChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeC
Confidence 345677889999999999998886 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh
Q psy6409 774 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853 (1832)
Q Consensus 774 TGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~ 853 (1832)
||||||++|+||++.++...+. .....+|.+|||+||||||.|+...+.+++...++++.+++||.....+...+.
T Consensus 176 TGSGKTlaylLP~l~~i~~~~~----~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~ 251 (545)
T PTZ00110 176 TGSGKTLAFLLPAIVHINAQPL----LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR 251 (545)
T ss_pred CCChHHHHHHHHHHHHHHhccc----ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH
Confidence 9999999999999988754322 123458999999999999999999999999999999999999999988888888
Q ss_pred cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhcccc
Q psy6409 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 933 (1832)
Q Consensus 854 ~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~ 933 (1832)
.+++|+|+||++|++++.++...+..+++|||||||+|++++|.+++..|+..++
T Consensus 252 ~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------- 306 (545)
T PTZ00110 252 RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------- 306 (545)
T ss_pred cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC-------------------------
Confidence 9999999999999999999888999999999999999999999999999998774
Q ss_pred ccceEEEEEecCChHHHHHHHHhcC-CCcEEEEcccC-CCCcceEEEEEEcchhhHHHHHHHHHHcC--CCCCEEEEEcc
Q psy6409 934 KYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQ 1009 (1832)
Q Consensus 934 ~~~q~v~~SATl~~~v~~~~~~~l~-~p~~v~~~~~~-~~~~~i~q~~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s 1009 (1832)
..+|+++||||+|..+..++..++. .|..+.++... .....+.+.+..+....|...|..++... ...++||||++
T Consensus 307 ~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t 386 (545)
T PTZ00110 307 PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVET 386 (545)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecC
Confidence 2479999999999999999998886 57777776654 34466888888888888888888888764 46799999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhc
Q psy6409 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089 (1832)
Q Consensus 1010 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~G 1089 (1832)
++.|+.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||+|++|||||+|.++++|+||+|
T Consensus 387 ~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiG 466 (545)
T PTZ00110 387 KKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIG 466 (545)
T ss_pred hHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1090 RaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||||+|..|.|++|+++++......|.+.+
T Consensus 467 RtGR~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 467 RTGRAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred ccccCCCCceEEEEECcchHHHHHHHHHHH
Confidence 999999999999999999877766666554
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=550.42 Aligned_cols=408 Identities=43% Similarity=0.693 Sum_probs=369.1
Q ss_pred hhhcccCHHHHHHHH-hcccceecC------CCCCCCcCCcccC-CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcE
Q psy6409 1372 KSLDEMTERDWRIFR-EDYSITIKG------GKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDI 1443 (1832)
Q Consensus 1372 ~~~~~~~~~~~~~~~-~~~~i~~~~------~~~p~p~~~~~e~-~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dv 1443 (1832)
+....|+......++ +.+.|.+.. ..+|+|..+|++. +-.+++++.+++.||.+|||||.||||.+++|.|+
T Consensus 181 ~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~Dl 260 (629)
T KOG0336|consen 181 NETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDL 260 (629)
T ss_pred chhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcce
Confidence 445567766655554 566776542 3589999999885 78899999999999999999999999999999999
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH
Q psy6409 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523 (1832)
Q Consensus 1444 ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~ 1523 (1832)
|++|.||+|||++|++|-+.++...|... ....+|.+|+++||++||.|+.-+..++. ..|.+.+|++||.+..++
T Consensus 261 iGVAQTgtgKtL~~L~pg~ihi~aqp~~~---~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eq 336 (629)
T KOG0336|consen 261 IGVAQTGTGKTLAFLLPGFIHIDAQPKRR---EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQ 336 (629)
T ss_pred EEEEecCCCcCHHHhccceeeeeccchhh---hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhH
Confidence 99999999999999999998887766543 35678999999999999999999998874 568899999999999999
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhh
Q psy6409 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603 (1832)
Q Consensus 1524 ~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~ 1603 (1832)
...+..+.+|+|+||++|.++...+.+++..+.|||+||||+|+++||++++.+|+--+.
T Consensus 337 ie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR-------------------- 396 (629)
T KOG0336|consen 337 IEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR-------------------- 396 (629)
T ss_pred HHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC--------------------
Confidence 999999999999999999999999999999999999999999999999999999986553
Q ss_pred hccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCC-CcceEEEEEEcchhhHHHHHHHHHHh-CCCCcEEEE
Q psy6409 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP-TERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIF 1681 (1832)
Q Consensus 1604 ~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~-~~~i~q~~~~~~~~~k~~~l~~~l~~-~~~~~vIVF 1681 (1832)
+.+|+++.|||+|+.+..++..|+.+|..+++++.+.. ...+.|.+..-.+..|...+..++.. ....++|||
T Consensus 397 -----PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiF 471 (629)
T KOG0336|consen 397 -----PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIF 471 (629)
T ss_pred -----CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEE
Confidence 45899999999999999999999999999999987754 46788888777777888777776654 377899999
Q ss_pred ECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1682 VNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
|.++..|+.|...|.-.|+.+..+||+-+|.+|+..++.|++|+++||||||+++||+|+|+|.||+|||+|.+++.|+|
T Consensus 472 v~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVH 551 (629)
T KOG0336|consen 472 VSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVH 551 (629)
T ss_pred EechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCC
Q psy6409 1762 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1809 (1832)
Q Consensus 1762 RiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h 1809 (1832)
|+||+||+|..|.+++|++..|..++..|.+.|..++ +.||.+|...
T Consensus 552 RvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ae-QevPdeL~~m 598 (629)
T KOG0336|consen 552 RVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAE-QEVPDELVRM 598 (629)
T ss_pred HhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhh-hhCcHHHHHH
Confidence 9999999999999999999999999999999999997 8999999754
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=615.91 Aligned_cols=396 Identities=44% Similarity=0.749 Sum_probs=368.8
Q ss_pred ChhhhhhccHHHHHHHHhhc-cceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEec
Q psy6409 695 TEKSLDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 773 (1832)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~ap 773 (1832)
..+.+..|+..++..++... +|.++|..+|.|+.+|.+.|++..++..++++||.+|+|||.+|||+|++|+|||++|.
T Consensus 331 e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvak 410 (997)
T KOG0334|consen 331 EVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAK 410 (997)
T ss_pred cchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeec
Confidence 35678889999999999877 59999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh
Q psy6409 774 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853 (1832)
Q Consensus 774 TGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~ 853 (1832)
||||||++|+||++.++...+... ...||.+|||+|||+||.||.+.+++|+..++++++++|||....++...++
T Consensus 411 TgSGKT~af~LPmirhi~dQr~~~----~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelk 486 (997)
T KOG0334|consen 411 TGSGKTLAFLLPMIRHIKDQRPLE----EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELK 486 (997)
T ss_pred cCCccchhhhcchhhhhhcCCChh----hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHh
Confidence 999999999999999887665543 3569999999999999999999999999999999999999999999999999
Q ss_pred cCCceeecCHHHHHHHHHcc---ccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhc
Q psy6409 854 LGCEIVIATPGRLIDVLENR---YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 930 (1832)
Q Consensus 854 ~~~~IlV~TP~rL~d~l~~~---~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~ 930 (1832)
+++.|+|+|||+++|++... ..++..+.|||+||||+|+++||.|++..|+..++
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr---------------------- 544 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR---------------------- 544 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc----------------------
Confidence 99999999999999998543 34677778999999999999999999999998874
Q ss_pred cccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcC-CCCCEEEEEc
Q psy6409 931 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRG-VKKPVIIFVN 1008 (1832)
Q Consensus 931 ~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~-~~~~vIVFv~ 1008 (1832)
..+|+++||||+|..++.++...+..|+.+.++........+.|.+.++. +..|+..|+++|... ...++||||.
T Consensus 545 ---pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 545 ---PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVD 621 (997)
T ss_pred ---hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 45899999999999999999999999999999988888899999999998 899999999999753 5789999999
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHh
Q psy6409 1009 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1088 (1832)
Q Consensus 1009 s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~ 1088 (1832)
....|+.+.+.|...|+.+..+||+.++.+|..+++.|++|.+++||||+++++|||++++.+|||||+|...++|+||.
T Consensus 622 ~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred CchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1089 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|||||+|+.|.|++|+++++..+...|.+.+
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999999998876666665544
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=610.09 Aligned_cols=391 Identities=35% Similarity=0.647 Sum_probs=356.5
Q ss_pred hccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHH
Q psy6409 701 EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTL 780 (1832)
Q Consensus 701 ~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTl 780 (1832)
.|+..+++.|++.++|.++|...|.|+.+|++++|++.++++|.+.||..|||+|.+|||.++.|+|+|++||||||||+
T Consensus 94 ~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTl 173 (518)
T PLN00206 94 GLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTA 173 (518)
T ss_pred cCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceee
Q psy6409 781 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 860 (1832)
Q Consensus 781 a~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV 860 (1832)
+|++|++.++...... ......++++|||+||||||.|+.+.++.++..+++++..++||.....+...+..+++|+|
T Consensus 174 ayllPil~~l~~~~~~--~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV 251 (518)
T PLN00206 174 SFLVPIISRCCTIRSG--HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIV 251 (518)
T ss_pred HHHHHHHHHHHhhccc--cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEE
Confidence 9999999887542211 01123678999999999999999999999999899999999999998888888888999999
Q ss_pred cCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEE
Q psy6409 861 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940 (1832)
Q Consensus 861 ~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~ 940 (1832)
+|||+|.+++.++.+.++++.+|||||||+|+++||++++..|+..++ ..|+++
T Consensus 252 ~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~--------------------------~~q~l~ 305 (518)
T PLN00206 252 GTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS--------------------------QPQVLL 305 (518)
T ss_pred ECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC--------------------------CCcEEE
Confidence 999999999999888999999999999999999999999999987763 268999
Q ss_pred EEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHH
Q psy6409 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAK 1018 (1832)
Q Consensus 941 ~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~ 1018 (1832)
||||+|+.++.++..++.++..+.++....+...+.+.+..+....+...|.+++... ..+++||||+++..|+.++.
T Consensus 306 ~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 306 FSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred EEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHH
Confidence 9999999999999999999999988877777778888888888888888888888753 34689999999999999999
Q ss_pred HHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC
Q psy6409 1019 GLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1097 (1832)
Q Consensus 1019 ~L~~-~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~ 1097 (1832)
.|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.++.+|+||+|||||+|..
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 9975 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCchHHHHHHHHH
Q psy6409 1098 GLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1098 G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|.|++|++.++..++..+.+.+
T Consensus 466 G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 466 GTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred eEEEEEEchhHHHHHHHHHHHH
Confidence 9999999998866666555543
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=608.64 Aligned_cols=411 Identities=46% Similarity=0.747 Sum_probs=375.2
Q ss_pred CChhhhcccCHHHHHHHHhccccee-cCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEc
Q psy6409 1369 WTEKSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 1447 (1832)
Q Consensus 1369 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~A 1447 (1832)
.....+..|+.+++..++....|.+ .|..+|.|+.+|++++|++.++++|.++||..|||+|.++||.+++|+|+|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~A 174 (545)
T PTZ00110 95 KEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIA 174 (545)
T ss_pred cCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3445677899999999999998886 788999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh
Q psy6409 1448 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 1527 (1832)
Q Consensus 1448 pTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l 1527 (1832)
|||||||++|++|++.++...+.. ....++.+|||+||+|||.|+...+.+++...++++++++||.+...+...+
T Consensus 175 pTGSGKTlaylLP~l~~i~~~~~~----~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 175 ETGSGKTLAFLLPAIVHINAQPLL----RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred CCCChHHHHHHHHHHHHHHhcccc----cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 999999999999999887654321 2345889999999999999999999999998999999999999998888888
Q ss_pred hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccc
Q psy6409 1528 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 1607 (1832)
Q Consensus 1528 ~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 1607 (1832)
..+++|+|+||++|.+++..+...+.++.+|||||||+|++++|.+++..|+..++
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------ 306 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------ 306 (545)
T ss_pred HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------
Confidence 89999999999999999999888999999999999999999999999999998774
Q ss_pred cCcceEEEEEccCChHHHHHHHHhcC-CCcEEEEcccC-CCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEEC
Q psy6409 1608 KKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVN 1683 (1832)
Q Consensus 1608 ~~~~q~v~~SATl~~~~~~~~~~~l~-~p~~v~i~~~~-~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~ 1683 (1832)
..+|+++||||+|..+..++..++. .|..+.++... .....+.+.+..+....|...|..++... ...++||||+
T Consensus 307 -~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~ 385 (545)
T PTZ00110 307 -PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVE 385 (545)
T ss_pred -CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEec
Confidence 3479999999999999999988876 57777776554 33456788888888888888888888764 4679999999
Q ss_pred chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHh
Q psy6409 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRi 1763 (1832)
++..|+.|+..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||+|++|||||+|.++++|+||+
T Consensus 386 t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRi 465 (545)
T PTZ00110 386 TKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRI 465 (545)
T ss_pred ChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCC
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1809 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h 1809 (1832)
|||||+|+.|.|++|++++|...+.++.+.+.... +.+|++|.+.
T Consensus 466 GRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~-q~vp~~l~~~ 510 (545)
T PTZ00110 466 GRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK-QPVPPELEKL 510 (545)
T ss_pred cccccCCCCceEEEEECcchHHHHHHHHHHHHHcc-CCCCHHHHHH
Confidence 99999999999999999999999999999999996 8999999876
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-60 Score=604.99 Aligned_cols=415 Identities=34% Similarity=0.618 Sum_probs=377.6
Q ss_pred CCChhhhc-ccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEE
Q psy6409 1368 HWTEKSLD-EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446 (1832)
Q Consensus 1368 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ 1446 (1832)
++.+..+. .|+.+++..+++.++|.+.|...|+|+.+|.+++|++.++++|...||..|||+|.++||.++.|+|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ 164 (518)
T PLN00206 85 YVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVS 164 (518)
T ss_pred CccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 33334443 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH
Q psy6409 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 1526 (1832)
Q Consensus 1447 ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~ 1526 (1832)
||||||||++|++|++.++...... ......++++|||+||+|||.|+++.++.++..++++++.++||.....+...
T Consensus 165 ApTGSGKTlayllPil~~l~~~~~~--~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~ 242 (518)
T PLN00206 165 ADTGSGKTASFLVPIISRCCTIRSG--HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR 242 (518)
T ss_pred ecCCCCccHHHHHHHHHHHHhhccc--cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH
Confidence 9999999999999999877542210 01123678999999999999999999999998889999999999998888888
Q ss_pred hhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhcc
Q psy6409 1527 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS 1606 (1832)
Q Consensus 1527 l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~ 1606 (1832)
+..+++|+|+||++|.+++..+.+.+.++.+|||||||+|+++||.+.+..|+..++
T Consensus 243 l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~----------------------- 299 (518)
T PLN00206 243 IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS----------------------- 299 (518)
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-----------------------
Confidence 888999999999999999999888999999999999999999999999999887664
Q ss_pred ccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECc
Q psy6409 1607 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQ 1684 (1832)
Q Consensus 1607 ~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s 1684 (1832)
.+|+++||||+++.++.++..++.++..+.++....+...+.+.+..+....+...+.+++... ...++||||++
T Consensus 300 ---~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 300 ---QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred ---CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCC
Confidence 2589999999999999999999999998888877777778888888888888888888888754 34689999999
Q ss_pred hhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHh
Q psy6409 1685 KKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRi 1763 (1832)
+..|+.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++.+|+||+
T Consensus 377 ~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRi 456 (518)
T PLN00206 377 RLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQI 456 (518)
T ss_pred chhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhc
Confidence 9999999999975 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCC
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPD 1811 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~ 1811 (1832)
|||||+|..|.|++|++++|...+.++.+.+...+ +.+|++|.+++.
T Consensus 457 GRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~-~~vp~~l~~~~~ 503 (518)
T PLN00206 457 GRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG-AAIPRELANSRY 503 (518)
T ss_pred cccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC-CCCCHHHHhChh
Confidence 99999999999999999999999999999999986 899999999984
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=518.83 Aligned_cols=366 Identities=31% Similarity=0.551 Sum_probs=344.1
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
..-+++.+|+++||.+++++++...||++|+.||+.|||.++.|+|+|+.|..|+|||.+|.+-+++.+. .
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d---------~ 91 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD---------I 91 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc---------c
Confidence 4456788999999999999999999999999999999999999999999999999999999998886542 2
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
.....++|||.||||||.|+.+.+..++.++++.+..++||.+..+....+..|.+++.+|||++++++.++.+....++
T Consensus 92 ~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 92 SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccccee
Confidence 34567899999999999999999999999999999999999999999988989999999999999999999999999999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+||+||||.|++.||..++-.|++++| +..|++++|||+|..+......|+.+|+
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp-------------------------~~~Qvv~~SATlp~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLP-------------------------PGAQVVLVSATLPHEILEMTEKFMTDPV 226 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCC-------------------------CCceEEEEeccCcHHHHHHHHHhcCCce
Confidence 999999999999999999999999997 3479999999999999999999999999
Q ss_pred EEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 962 TVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
.+.+.....+...+.|++..+.. +.|+..|.++.....-.+++|||||+..++.|.+.|+..++.+..+||+|++++|.
T Consensus 227 rilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd 306 (400)
T KOG0328|consen 227 RILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERD 306 (400)
T ss_pred eEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHH
Confidence 99999988888889998887755 45999999988877778899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHh
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
.++..|++|+.+||++||+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.+|.|+..+|...+..++++..
T Consensus 307 ~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 307 KIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred HHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred c
Q psy6409 1121 S 1121 (1832)
Q Consensus 1121 ~ 1121 (1832)
.
T Consensus 387 t 387 (400)
T KOG0328|consen 387 T 387 (400)
T ss_pred h
Confidence 3
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=569.12 Aligned_cols=383 Identities=42% Similarity=0.717 Sum_probs=351.0
Q ss_pred ceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchh
Q psy6409 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK 795 (1832)
Q Consensus 716 i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~ 795 (1832)
+.+.|.++|.++..|++..+.+.+..+++..||..|||||+.+||.+..|+|+++||+||||||.+|++|++.++.....
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred hhhccccC-CCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc
Q psy6409 796 IARMEDAD-QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 874 (1832)
Q Consensus 796 ~~~~~~~~-~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~ 874 (1832)
........ ..|.+|||+||||||.|++.+.+++....+++++.+|||.+...+...+..+|+|+|+|||+|.+++..+.
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 33322222 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH
Q psy6409 875 LVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 953 (1832)
Q Consensus 875 ~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~ 953 (1832)
+.|+.|+||||||||+|+| ++|+|+++.|+.++... ....+|++|||||+|..+..++
T Consensus 222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~---------------------~~~~~qt~mFSAtfp~~iq~l~ 280 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP---------------------PKNNRQTLLFSATFPKEIQRLA 280 (482)
T ss_pred eehhhCcEEEecchHHhhhhccccccHHHHhcccCCC---------------------CccceeEEEEeccCChhhhhhH
Confidence 9999999999999999999 99999999999887421 1346899999999999999999
Q ss_pred HHhcCC-CcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCC----CC-----CEEEEEcccchHHHHHHHHHHc
Q psy6409 954 RSYLRR-PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV----KK-----PVIIFVNQKKGADVLAKGLEKL 1023 (1832)
Q Consensus 954 ~~~l~~-p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~----~~-----~vIVFv~s~~~~~~l~~~L~~~ 1023 (1832)
..|+.+ .+++.++..+....++.|.+.++.+..|...|+++|.... .. .++|||.+++.|..++.+|...
T Consensus 281 ~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 281 ADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred HHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 999886 7888999999999999999999999999999999997533 22 6999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
++++..+||..++.+|...++.|++|.+.|||||+|++||||||+|.||||||+|.++.+|+||||||||+|..|.++.|
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHH
Q psy6409 1104 CTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~~l 1119 (1832)
+...+......|.+.|
T Consensus 441 ~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 441 FNEKNQNIAKALVEIL 456 (482)
T ss_pred eccccchhHHHHHHHH
Confidence 9977755555555544
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=555.72 Aligned_cols=361 Identities=39% Similarity=0.597 Sum_probs=334.4
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
..+|.+++|+..+++++..+||..|||||.++||.++.|+|++.||.||||||.||++|+|..+.-.|. .....
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------~~~~T 253 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------KVAAT 253 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------cCcce
Confidence 458999999999999999999999999999999999999999999999999999999999998876564 24567
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llVi 1560 (1832)
+||||+||||||.|++...++++.+..+.++.++||.+...|...|+..+||||+|||+|++++.+.. +.+.++.++|+
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999998864 78999999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|++.||.+++..|+..+| ..+|+++|||||+..+..++...|+.|+.+.+
T Consensus 334 DEADRMLeegFademnEii~lcp-------------------------k~RQTmLFSATMteeVkdL~slSL~kPvrifv 388 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLCP-------------------------KNRQTMLFSATMTEEVKDLASLSLNKPVRIFV 388 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-------------------------ccccceeehhhhHHHHHHHHHhhcCCCeEEEe
Confidence 99999999999999999999997 56899999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEE-c--chhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYI-L--SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~-~--~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~i 1717 (1832)
.+.......+.|-+.. . .+..+...|..++.......+|||+.|++.|..+--.|--+|+.++.+||.++|.+|...
T Consensus 389 d~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 389 DPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred CCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 8877777666665432 2 344566677788887888899999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1718 l~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
++.|++++++||||||+++||+||+.|.+||||+||.++..|+||+||++|+|..|.+|+|+.++|..+++.+...
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888777654
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=543.40 Aligned_cols=412 Identities=41% Similarity=0.666 Sum_probs=386.4
Q ss_pred CChhhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcC
Q psy6409 1369 WTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 1448 (1832)
Q Consensus 1369 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~Ap 1448 (1832)
-...++..|+..+...++..+++.+.|...|.|+.+|.+.++...++.++++..|.+|||+|.+++|..+.|+||+.+|.
T Consensus 189 ~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAk 268 (731)
T KOG0339|consen 189 EEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAK 268 (731)
T ss_pred cChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheee
Confidence 34456677777777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh
Q psy6409 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528 (1832)
Q Consensus 1449 TGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~ 1528 (1832)
||||||.||+.|++.++...|.+. ...+|..||+|||++||.|++.++++|++..|+++++++||.+.++|...|.
T Consensus 269 tgSgktaAfi~pm~~himdq~eL~----~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk 344 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPELK----PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK 344 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhhc----CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh
Confidence 999999999999999998877654 3689999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhcccc
Q psy6409 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608 (1832)
Q Consensus 1529 ~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 1608 (1832)
.++.|||||||||++++.-+.+++.++.||||||||+|+++||.+++..|...+.
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------- 399 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------- 399 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC-------------------------
Confidence 9999999999999999999999999999999999999999999999999998885
Q ss_pred CcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHh-CCCCcEEEEECchh
Q psy6409 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNR-GVKKPVIIFVNQKK 1686 (1832)
Q Consensus 1609 ~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~-~~~~~vIVFv~s~~ 1686 (1832)
+.+|+++||||++..++.+++.+|.+|+.+..+..+..+..|.|.+.++.. ..|..+|+.-|-. ...+++||||..+.
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 558999999999999999999999999999999999999999999988865 5566777665544 35679999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhccc
Q psy6409 1687 GADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766 (1832)
Q Consensus 1687 ~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRa 1766 (1832)
.++.++..|.-.+++|..+||+|.|.+|.+++..|+.+...||||||++++|+|||++..|||||+-.+++.|+||+||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCC
Q psy6409 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1810 (1832)
Q Consensus 1767 GR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~ 1810 (1832)
||+|.+|++++|+++.|..+.-.|.+.|.... ++||++|.+..
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~ag-QnVP~~l~dla 602 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG-QNVPDELMDLA 602 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhcc-ccCChHHHHHH
Confidence 99999999999999999999999999999886 89999998763
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-59 Score=590.73 Aligned_cols=363 Identities=44% Similarity=0.702 Sum_probs=337.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..|.+++|++.++++|.+.||..|||||.++||.++.|+|+++.|+||||||+||++|++..+...+ .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~- 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVS- 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCc-
Confidence 6799999999999999999999999999999999999999999999999999999999999875320 011112
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+|||+||||||.|+++.+..++... +++++.++||.+...+...+..+++||||||||+++++.++.+.+.++.++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999999988 799999999999999998888899999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|+++||.+++..|+..+| ..+|+++||||+|..+..+.+.++.+|..+.+.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p-------------------------~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~ 236 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALP-------------------------PDRQTLLFSATMPDDIRELARRYLNDPVEIEVS 236 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCC-------------------------cccEEEEEecCCCHHHHHHHHHHccCCcEEEEc
Confidence 9999999999999999999997 247999999999999999999999999988888
Q ss_pred ccCC--CCcceEEEEEEcchhh-HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 1642 SVGK--PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718 (1832)
Q Consensus 1642 ~~~~--~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il 1718 (1832)
.... ....+.|.+..+.... |...|..++......++||||+|+..|+.|+..|...|+.+..+||+|+|.+|..++
T Consensus 237 ~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 237 VEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred cccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 5554 7788999999998765 999999999988777899999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcC
Q psy6409 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1719 ~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~ 1797 (1832)
+.|++|+++||||||+++||||||+|++|||||+|.+.++|+||+|||||+|..|.|++|+++. +...+..+...+...
T Consensus 317 ~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 317 EKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 888888888876443
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=503.76 Aligned_cols=374 Identities=30% Similarity=0.549 Sum_probs=348.6
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1398 ~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
--.++.+|++++|.+++++.+..+||..|+.+|..|++.++.|+|||+.|..|+|||.+|.+.+|+.+.. .
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~---------~ 92 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI---------S 92 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---------c
Confidence 3456789999999999999999999999999999999999999999999999999999998888754422 2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCcee
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~l 1557 (1832)
.....+|||.||||||.|+.+.+..++.++++.+..+.||.+..+....+..|.+++.+|||+++++++++.+....+.+
T Consensus 93 ~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkm 172 (400)
T KOG0328|consen 93 VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKM 172 (400)
T ss_pred cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeE
Confidence 34578999999999999999999999999999999999999988888888889999999999999999999999999999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
+|+||||.|++.||..++-.|+.++| +..|++++|||+|..+.+....|+.+|..
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp-------------------------~~~Qvv~~SATlp~eilemt~kfmtdpvr 227 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLP-------------------------PGAQVVLVSATLPHEILEMTEKFMTDPVR 227 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCC-------------------------CCceEEEEeccCcHHHHHHHHHhcCCcee
Confidence 99999999999999999999999998 45799999999999999999999999999
Q ss_pred EEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1638 VYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1638 v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
+.+...+.+...++|++..+.. ..|...|+++.....-.+++|||||++.+++|.+.|+..++.|..+||+|.+++|..
T Consensus 228 ilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~ 307 (400)
T KOG0328|consen 228 ILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDK 307 (400)
T ss_pred EEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHH
Confidence 9999999898889998877655 459999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
++..|++|+.+|||+||+.+||+|+|.|++|||||+|.+.+.|+||+||.||+|.+|.|+.|+..+|...+.++.+++..
T Consensus 308 im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 308 IMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred HHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCChhh
Q psy6409 1797 SPVSTCPPEL 1806 (1832)
Q Consensus 1797 ~~~~~~~~~L 1806 (1832)
. +..+|-.+
T Consensus 388 ~-i~emp~nv 396 (400)
T KOG0328|consen 388 Q-IDEMPMNV 396 (400)
T ss_pred h-cccccchh
Confidence 5 35555543
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-59 Score=553.47 Aligned_cols=398 Identities=41% Similarity=0.694 Sum_probs=367.9
Q ss_pred ccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhC
Q psy6409 1389 YSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468 (1832)
Q Consensus 1389 ~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~ 1468 (1832)
..+.+.|..+|.++..|.+..+...+..+++..||..|||+|+.+||.+..|+|+++||+||||||.||++|++.++...
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred chhhccc-ccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc
Q psy6409 1469 PKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 1547 (1832)
Q Consensus 1469 p~~~~~~-~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~ 1547 (1832)
....... .....|.+|||+||||||.|++.+.+++....+++++.++||.+...+...+..+|+|+|||||+|.+++..
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~ 219 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER 219 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc
Confidence 3322222 222479999999999999999999999998899999999999998888888899999999999999999999
Q ss_pred cccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHH
Q psy6409 1548 RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 1626 (1832)
Q Consensus 1548 ~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~ 1626 (1832)
+.+.+++|.+||+||||+|++ ++|+|+++.|+....... ...+|++|||||+|..+..
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---------------------~~~~qt~mFSAtfp~~iq~ 278 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---------------------KNNRQTLLFSATFPKEIQR 278 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC---------------------ccceeEEEEeccCChhhhh
Confidence 999999999999999999999 999999999998775221 2568999999999999999
Q ss_pred HHHHhcCC-CcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCC----CC-----cEEEEECchhHHHHHHHHHH
Q psy6409 1627 LARSYLRR-PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV----KK-----PVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1627 ~~~~~l~~-p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~----~~-----~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
++..++.+ ...+.++..+....++.|.+.++.+..|...|+++|.... .. .++|||++++.|..++..|.
T Consensus 279 l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 279 LAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred hHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 99888886 7788889999999999999999999999999999997543 22 79999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEE
Q psy6409 1697 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776 (1832)
Q Consensus 1697 ~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai 1776 (1832)
..++++..+||..++.+|...++.|++|++.|||||++++||+|||+|.+|||||+|.++.+|+||||||||.|+.|.++
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHhhcCCCCCCChhhcC
Q psy6409 1777 SFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808 (1832)
Q Consensus 1777 ~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~ 1808 (1832)
.|+...+....+.|.+.+.+++ +.+|+||..
T Consensus 439 sf~n~~~~~i~~~L~~~l~ea~-q~vP~wl~~ 469 (482)
T KOG0335|consen 439 SFFNEKNQNIAKALVEILTEAN-QEVPQWLSE 469 (482)
T ss_pred EEeccccchhHHHHHHHHHHhc-ccCcHHHHh
Confidence 9999999999999999999997 899999988
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=520.18 Aligned_cols=363 Identities=34% Similarity=0.517 Sum_probs=326.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
....|+.+||++|+.+.|+.+|+++|||||..+||.|+.|+|+|+||.||||||++|.||||+.+... ..|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed---------P~g 75 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED---------PYG 75 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC---------CCc
Confidence 35689999999999999999999999999999999999999999999999999999999999987653 357
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc----ccccCCce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR----YLVLNQCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~----~~~l~~~~ 881 (1832)
..++|+.||||||.|+.+.|..+++.+++++..++||++.-.|...|...+|+||+|||++.+++... ...++++.
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 89999999999999999999999999999999999999999998999999999999999999999775 24688999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
++||||||+|++..|...++.+...+|. .+|+++||||+.+.+..+...-...+.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~-------------------------~RQtLlfSATitd~i~ql~~~~i~k~~ 210 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPK-------------------------PRQTLLFSATITDTIKQLFGCPITKSI 210 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCC-------------------------ccceEEEEeehhhHHHHhhcCCccccc
Confidence 9999999999999999999999998872 379999999998777654433333322
Q ss_pred --EEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC---CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 962 --TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 962 --~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~---~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
.+...+....+..+.|.+..++...+...|..+|... ..+.++||+|+..+|+.|+..|..+++.+..+||.|+|
T Consensus 211 a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q 290 (442)
T KOG0340|consen 211 AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQ 290 (442)
T ss_pred ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchH
Confidence 2222233455677888899999999999999988753 35689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
.+|...+.+|+++.++||||||+++||+|||.|.+|||||.|.++.+|+||+||++|+|..|.+++|+++.|..++..++
T Consensus 291 ~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 291 KERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcC
Q psy6409 1117 QMMISS 1122 (1832)
Q Consensus 1117 ~~l~~~ 1122 (1832)
+-.+..
T Consensus 371 ~~igkK 376 (442)
T KOG0340|consen 371 EEIGKK 376 (442)
T ss_pred HHHhcc
Confidence 876543
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=541.13 Aligned_cols=362 Identities=37% Similarity=0.583 Sum_probs=332.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...|++..|++..+++|+++||.++|++|+.+||.++.|+|+++.|-||||||+||+||+++.+...+... ..+.
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-----r~~~ 155 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-----RNGT 155 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-----CCCe
Confidence 45678889999999999999999999999999999999999999999999999999999999987755432 3678
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 884 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lV 884 (1832)
.+||++||||||+|++.+++++.... ++.+..++||.........+..+++|+|||||+|+|++.+.. +....++++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 89999999999999999999999888 999999999999888888888899999999999999998754 4566778999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC-CcEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATV 963 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~-p~~v 963 (1832)
+||||+++++||+.+++.|+..+| ..+|+++||||+|+.|++++...+.. |.++
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lp-------------------------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v 290 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILP-------------------------KQRQTLLFSATQPSKVKDLARGALKRDPVFV 290 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhcc-------------------------ccceeeEeeCCCcHHHHHHHHHhhcCCceEe
Confidence 999999999999999999999987 35899999999999999999988775 6666
Q ss_pred EEcccC--CCCcceEEEEEEcchhhHHHHHHHHHHcCCC-CCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 964 YIGSVG--KPTERIEQIVYILSEQDKRKKLMEVLNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 964 ~~~~~~--~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~-~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
...+.+ .....+.|.+.++....++..+..+|+.+.. .++||||+|...+..+++.|....++|..+||+++|..|.
T Consensus 291 ~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 291 NVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 655443 3456788988888888888999999988766 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
.++..|+..+.-|||||||++||+|+|+|++||+||+|.++++|+||+|||||.|+.|.+++|+.+.|..|+++|++.
T Consensus 371 ~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 371 STFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred hHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999954
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=518.06 Aligned_cols=359 Identities=34% Similarity=0.589 Sum_probs=338.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
.|+++.|..+++..+.+.||+.|+|||.++||.++.|+|+++-|..|+|||.+|.+|+|..|. .....-.+
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid---------~~~~~IQ~ 156 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID---------PKKNVIQA 156 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC---------ccccceeE
Confidence 699999999999999999999999999999999999999999999999999999999998763 23456789
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
+|++||||||.|+...+..+++.+|+++...+||.+..+....+...+|++|+||||++|++..+...+++|.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|.|++..|.+.++.++..+| +.+|++++|||+|-.+..|...++.+|..+..-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP-------------------------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~- 290 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLP-------------------------KERQILLYSATFPLTVKGFMDRHLKKPYEINLME- 290 (459)
T ss_pred hhhhchhhhhHHHHHHHhCC-------------------------ccceeeEEecccchhHHHHHHHhccCcceeehhh-
Confidence 99999999999999999997 3589999999999999999999999998886643
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 969 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
......+.|++.++.+.+|+..|..++....-.+.|||||+...++.+|+.+.++|+.+.++|+.|.|+.|..++..|++
T Consensus 291 eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 291 ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred hhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 34456789999999999999999998888777889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|.++.|||||++.||||+++|++|||||+|++.++|+||+||+||.|.-|.||.|++.+|...++.+++-+-.+
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999898888766444
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=528.46 Aligned_cols=361 Identities=35% Similarity=0.553 Sum_probs=325.5
Q ss_pred cCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 728 RNWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 728 ~~f~~~~--L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
.+|++++ |++++++++...||...||+|..+||.++.++||++-|+||||||+||++|++..|..... ......
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~----~~~~~~ 79 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREA----KTPPGQ 79 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhcc----CCCccc
Confidence 3677775 4599999999999999999999999999999999999999999999999999998843111 111123
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCC-CCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccC--Cce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLN--QCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~-~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~--~~~ 881 (1832)
.-+|||+||||||.||.+++..|... .++++.+++||.+..+....+. .+++|+|||||||.+++.+....++ .+.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 57999999999999999999999877 6889999999999888877765 4689999999999999998665555 999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+|||||||+++|+||...++.|++.+| +.+++-+||||+...+.+++...+++|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~LP-------------------------KQRRTGLFSATq~~~v~dL~raGLRNpv 214 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFLP-------------------------KQRRTGLFSATQTQEVEDLARAGLRNPV 214 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhcc-------------------------cccccccccchhhHHHHHHHHhhccCce
Confidence 999999999999999999999999998 4578999999999999999999999999
Q ss_pred EEEEcccCC--CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHH
Q psy6409 962 TVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQE 1037 (1832)
Q Consensus 962 ~v~~~~~~~--~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~ 1037 (1832)
.+.+..... .+..+.-.+..|....|...|+++|......++|||..|...++..+..|... ...+..+||.|.+.
T Consensus 215 ~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~ 294 (567)
T KOG0345|consen 215 RVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQK 294 (567)
T ss_pred eeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcch
Confidence 999887765 55567777888999999999999999988899999999999999999988765 67899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
.|..+++.|++-.-.||+|||+++||||||+|++||+||+|.++..|+||+|||||+|..|.|++|+.+.+..++..+.-
T Consensus 295 ~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 295 ARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 99999999999888999999999999999999999999999999999999999999999999999999998888777654
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=572.94 Aligned_cols=371 Identities=35% Similarity=0.534 Sum_probs=337.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
-.+|++++|++.++++|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++.+...+... .....++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--~~~~~~~ 84 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--DRKVNQP 84 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc--ccccCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999886533211 1123578
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++|||+||+|||.|+++.+..++..+++++..++||.....+...+..+++|+|+||++|.+++..+.+.++.+++||||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 99999999999999999999999999999999999999888888888889999999999999999888899999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|...+..++..++.. ..++.++||||++..+..++..++.+|..+.+.
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~-----------------------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~ 221 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPA-----------------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVE 221 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCc-----------------------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEc
Confidence 999999999999999999888621 235789999999999999999999999888887
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
........+.+.+.......|...|..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|
T Consensus 222 ~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F 301 (423)
T PRK04837 222 PEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEF 301 (423)
T ss_pred CCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHH
Confidence 66666667777777777788888899988877778999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
++|+++|||||++++||||+|+|++|||||+|.+..+|+||+|||||+|..|.|++|+++++...+..+.+.+..+
T Consensus 302 ~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 302 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred HcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988888887766544
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-58 Score=529.83 Aligned_cols=362 Identities=33% Similarity=0.522 Sum_probs=335.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
.+..|++++|+..++++|++.+|..||.||+++||.++.|+|||+.|.||||||+||++|+|+.|.... +....|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-----Ws~~DG 141 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-----WSPTDG 141 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-----CCCCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999886532 345678
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCceeEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIV 884 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lV 884 (1832)
.-+|||.||||||.|+++++.+++...++.++.++||.........+. ..+|+|||||||+.+|... .+..+++.+||
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 899999999999999999999999999999999999999776665554 6999999999999999654 56888999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
+||||+|+||||...+..|+..+| ..+|+++||||-...+..+++..+.+|.++.
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP-------------------------~~RQTLLFSATqt~svkdLaRLsL~dP~~vs 275 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKDPVYVS 275 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCC-------------------------hhheeeeeecccchhHHHHHHhhcCCCcEEE
Confidence 999999999999999999999997 3489999999999999999999999999988
Q ss_pred Ecc--cCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHH
Q psy6409 965 IGS--VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 965 ~~~--~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~ 1040 (1832)
+.. ....+.++.|.++.+....|+..|..++..+...++|||+.|.+.+..+++.+..+ |+++..+||.|+|..|.
T Consensus 276 vhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 276 VHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred EeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 863 24567789999999999999999999999999999999999999999999999876 88999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC-chHHHHHHHH
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYDLKQM 1118 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d-~~~~~~l~~~ 1118 (1832)
.++..|-....-||+|||+++||||+|+|++||++|+|.++.+|+||+||++|.+..|.+++++++++ ..++..|...
T Consensus 356 ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 356 EVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred HHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 6677777654
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=564.38 Aligned_cols=367 Identities=38% Similarity=0.656 Sum_probs=335.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
+|++++|+++++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 68999999999999999999999999999999999999999999999999999999999987542211 011234689
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
|||+||++||.|+.+.+..++..+++++..++||.+...+...+..+++|+|+||++|++++....+.++++++||||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 99999999999999999999999999999999999998888888888999999999999999888889999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|+|++++|...+..++..++ ...|+++||||+++.+..++..++.+|..+.+...
T Consensus 159 h~ll~~~~~~~i~~il~~l~-------------------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 213 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLP-------------------------AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213 (456)
T ss_pred HHHhccccHHHHHHHHHhCC-------------------------ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc
Confidence 99999999999999988775 23689999999999999999999999988887766
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 969 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
......+.+.+..+....+...+..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|++
T Consensus 214 ~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 214 NTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293 (456)
T ss_pred cccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 66667788888888888888888888877777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCC
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1123 (1832)
|+++|||||+++++|||||+|++||||++|.+..+|+||+|||||+|..|.|++|++.+|..++..++..+..++
T Consensus 294 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 294 GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred CCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=575.05 Aligned_cols=363 Identities=40% Similarity=0.646 Sum_probs=335.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
..+|.+++|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|++..+.. ...++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~---------~~~~~ 75 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP---------ELKAP 75 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------ccCCC
Confidence 346999999999999999999999999999999999999999999999999999999999987632 23468
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
++|||+||++||.|++..+..+...+ ++.++.++||.+...+...+..+++|||+||++|++++.++.+.++++.+|||
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 99999999999999999999987665 79999999999988888888889999999999999999999889999999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||+|++++|...+..|+..+| ...|+++||||+|..+..++..|+.+|..+.+
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp-------------------------~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i 210 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIP-------------------------EGHQTALFSATMPEAIRRITRRFMKEPQEVRI 210 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCC-------------------------CCCeEEEEEccCChhHHHHHHHHcCCCeEEEc
Confidence 99999999999999999998886 24789999999999999999999999988887
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.........+.+.+..+....|...|..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.
T Consensus 211 ~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~ 290 (629)
T PRK11634 211 QSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 (629)
T ss_pred cCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHH
Confidence 76666666788888888888899999999987777899999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCC
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1123 (1832)
|++|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++.|..++..+.+.+...+
T Consensus 291 Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 291 LKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred HhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999888998888765544
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=570.78 Aligned_cols=370 Identities=39% Similarity=0.630 Sum_probs=334.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.+.||..|||||.++||.++.|+|+|++||||||||++|++|+++.+...+... .....+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~--~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA--DRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 4699999999999999999999999999999999999999999999999999999999999886432111 11223689
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lViD 886 (1832)
+|||+||+|||.|+++.+.+++..+++++..++||.....+...+..+++|||+||++|++++.+. .+.+..+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999999999999999999999988888788888999999999999998765 4678999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|...+..|+..++. ....|+++||||++..+..++..++.+|..+.+.
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~-----------------------~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPE-----------------------RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhccc-----------------------ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 99999999999999999988852 1246999999999999999999999999887776
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
........+.+.++......+...|..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 224 ~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 224 TETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 65556667888888888888999999999877788999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
++|+++|||||+++++|||||+|++|||||+|.+..+|+||+|||||.|..|.|++|+++.+...+..+.+.+...
T Consensus 304 r~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 304 QKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred HcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888887766544
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-56 Score=565.07 Aligned_cols=359 Identities=36% Similarity=0.576 Sum_probs=331.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++.+.. ...+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~---------~~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---------KRFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---------ccCCce
Confidence 57999999999999999999999999999999999999999999999999999999999987632 123568
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+|||+||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+|||+|.+++.++.+.++++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 9999999999999999999987654 789999999999988888888899999999999999999988889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|...+..++..+| ..+|+++||||+|+.+..++..++.+|..+.+.
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~-------------------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAP-------------------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCC-------------------------cccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999998886 246999999999999999999999999888876
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
... ....+.+.++.+....|...+..++....+.++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 210 ~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 210 STH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred cCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 544 3445888888888888999999999887788999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
++|.++|||||+++++|||+|+|++|||||+|.+..+|+||+|||||+|..|.|++|++++|...+..+.+.+..
T Consensus 289 ~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 289 ANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred HcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999998888888776543
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-58 Score=499.89 Aligned_cols=368 Identities=33% Similarity=0.584 Sum_probs=344.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
.|++..|.++++..+.+.||..|+|+|.++||.++.|+|+++-|..|+|||.||++|+|..+.. ....-.+
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~---------~~~~IQ~ 156 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP---------KKNVIQA 156 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc---------cccceeE
Confidence 5888999999999999999999999999999999999999999999999999999999987632 3456779
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
+|++||||||.|+...++.+++.+++.++..+||.+..+....+....+++|+|||+++++...+...+++|.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|.|++..|.+.++.+++.+| +.+|++++|||+|-.+..+...++.+|..++.-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP-------------------------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~- 290 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLP-------------------------KERQILLYSATFPLTVKGFMDRHLKKPYEINLME- 290 (459)
T ss_pred hhhhchhhhhHHHHHHHhCC-------------------------ccceeeEEecccchhHHHHHHHhccCcceeehhh-
Confidence 99999999999999999998 5689999999999999999999999998876533
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1644 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
......+.|+|.++.+..|...|-.++.+..-...||||||...++.||+.+..+|+++.++|+.|-|+.|..++..|++
T Consensus 291 eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 291 ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred hhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 34556788999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCP 1803 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~ 1803 (1832)
|.++.|||||++.||||+++|++|||||+|++.++|+||+||+||+|..|.|+.+++-+|...++.+++.+-.. ++.+|
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE-I~pip 449 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE-IKPIP 449 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc-cccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988544 67777
Q ss_pred hhhc
Q psy6409 1804 PELL 1807 (1832)
Q Consensus 1804 ~~L~ 1807 (1832)
+.+.
T Consensus 450 ~~iD 453 (459)
T KOG0326|consen 450 SNID 453 (459)
T ss_pred CcCC
Confidence 6544
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=498.47 Aligned_cols=360 Identities=34% Similarity=0.538 Sum_probs=327.3
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
...+|..+||++|+.+.|+.+|+..|||+|..+||.++.|+|+|++|.||||||++|.+|+|+.+...| .|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP---------~g 75 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP---------YG 75 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC---------Cc
Confidence 346799999999999999999999999999999999999999999999999999999999998887654 58
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc----ccccCCce
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR----YLVLNQCT 1556 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~----~~~l~~v~ 1556 (1832)
-.++|+.||||||.|+.+.|..+++.+++++..++||.+.-.+...|...+||||+|||++.+++.++ ...++++.
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 89999999999999999999999999999999999999999999999999999999999999999876 35688999
Q ss_pred eEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCc
Q psy6409 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 1636 (1832)
Q Consensus 1557 llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~ 1636 (1832)
++|+||||+|++..|.+.++.|.+.+| ..+|+++||||+.+.+..+.......+.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP-------------------------~~RQtLlfSATitd~i~ql~~~~i~k~~ 210 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLP-------------------------KPRQTLLFSATITDTIKQLFGCPITKSI 210 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCC-------------------------CccceEEEEeehhhHHHHhhcCCccccc
Confidence 999999999999999999999999887 3479999999999888765544444422
Q ss_pred E--EEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC---CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 1637 T--VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1711 (1832)
Q Consensus 1637 ~--v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~---~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~ 1711 (1832)
. +...+.......+.|.+..++...+..+|+.+|... ..+.++||+|+..+|+.|+..|..+++.+..+||.|+|
T Consensus 211 a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q 290 (442)
T KOG0340|consen 211 AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQ 290 (442)
T ss_pred ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchH
Confidence 2 222233445567888899999999999999998754 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHH
Q psy6409 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1712 ~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1791 (1832)
.+|...+.+|+++.++|||||||++||+|||.|++|||||+|.++.+|+||+||++|+|..|.+++|+++.|.+.+..++
T Consensus 291 ~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 291 KERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHh
Q psy6409 1792 QMM 1794 (1832)
Q Consensus 1792 ~~l 1794 (1832)
+.+
T Consensus 371 ~~i 373 (442)
T KOG0340|consen 371 EEI 373 (442)
T ss_pred HHH
Confidence 765
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=553.41 Aligned_cols=368 Identities=35% Similarity=0.538 Sum_probs=335.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|++++|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|++..+...+... .....+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--~~~~~~~~ 85 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--DRKVNQPR 85 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 5799999999999999999999999999999999999999999999999999999999998886543211 11235689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+|||+||++||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.+..+.+.++.+|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999999999999999999988887777788899999999999999999889999999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
||+|++++|...+..++..++.. ..++.++||||++..+..+...++.+|..+.+..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~-----------------------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~ 222 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPA-----------------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP 222 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCc-----------------------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC
Confidence 99999999999999999888621 2357899999999999999999999998888776
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhh
Q psy6409 1643 VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK 1722 (1832)
Q Consensus 1643 ~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~ 1722 (1832)
.......+.+.+.......|...+..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 223 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~ 302 (423)
T PRK04837 223 EQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT 302 (423)
T ss_pred CCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH
Confidence 66666677777777777888888999988777789999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1723 GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1723 ~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
+|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++.+...+..+.+++.
T Consensus 303 ~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 303 RGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred cCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888876654
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=517.21 Aligned_cols=364 Identities=37% Similarity=0.580 Sum_probs=333.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
...|++..|++..+++|+.+||...|++|..+|+.++.|+|+++.|.||||||+||++|+++++...+... .++.
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-----r~~~ 155 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-----RNGT 155 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-----CCCe
Confidence 34678889999999999999999999999999999999999999999999999999999999988765433 3678
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 1559 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llV 1559 (1832)
.||||+||||||.|++.+++++.... ++.+..++||.........+..+++|+|||||+|++++.+.. +...++.++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 89999999999999999999998887 899999999999888888888899999999999999998854 4566779999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC-CcEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATV 1638 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~-p~~v 1638 (1832)
+||||+++++||+..++.|+..+| ..+|+++||||.+..+++++...+.. |..+
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lp-------------------------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v 290 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILP-------------------------KQRQTLLFSATQPSKVKDLARGALKRDPVFV 290 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhcc-------------------------ccceeeEeeCCCcHHHHHHHHHhhcCCceEe
Confidence 999999999999999999999997 45899999999999999999988875 6666
Q ss_pred EEcccC--CCCcceEEEEEEcchhhHHHHHHHHHHhCCC-CcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 1639 YIGSVG--KPTERIEQIVYILSEQDKRKKLMEVLNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715 (1832)
Q Consensus 1639 ~i~~~~--~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~ 1715 (1832)
.+...+ .....+.|.+.+++...+...++.+|+++.. .++||||+|...+..++..|+...++|..+||+++|..|.
T Consensus 291 ~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 291 NVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 554433 3446788988888888888999999988765 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1716 ~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
.+...|++.+.-|||||||++||+|+|+|++||+||+|.+.++||||+|||||.|+.|.+++|+.+.+..|+..|+..+.
T Consensus 371 ~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl 450 (543)
T KOG0342|consen 371 STFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPL 450 (543)
T ss_pred hHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985543
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=517.10 Aligned_cols=360 Identities=33% Similarity=0.521 Sum_probs=332.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+..|.+++|+..+++.|++.+|..||.+|.++||.++.|+|||+.|.||||||+||++|+|..+.... +....|.
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-----Ws~~DGl 142 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-----WSPTDGL 142 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-----CCCCCCc
Confidence 44688999999999999999999999999999999999999999999999999999999999886643 4556889
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-ccccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llVi 1560 (1832)
-+|||.||||||.|++..+.+++...++.+..++||.........+. +.+|+|||||+|+.++... .+...++.+||+
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 99999999999999999999999999999999999999877666654 6899999999999999765 467889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|+++||...+..|++.+| ..+|+++||||....+.++++..+.+|..+.+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP-------------------------~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCC-------------------------hhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 99999999999999999999998 55899999999999999999999999999888
Q ss_pred ccc--CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHH
Q psy6409 1641 GSV--GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1641 ~~~--~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~ 1716 (1832)
... ...+.++.|.|..+....|+..|..++..+...++|||++|++++..+++.|..+ |+++..+||.|+|..|..
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 732 4556788999999999999999999999999999999999999999999999986 788999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCC-hhHHHHHHH
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYDLKQ 1792 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~~~l~~ 1792 (1832)
++..|...+.-||+|||+++||+|+|.|++||++|+|.++++||||+||++|.+..|.+++++++++ ..++..|..
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 455555544
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=515.79 Aligned_cols=379 Identities=31% Similarity=0.500 Sum_probs=323.6
Q ss_pred cccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 726 PVRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
.-..|.++||++-+...|+. +++..||.+|.++||.+++|+|++|-|+||||||++|+||+++.|..++.. .....
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k---i~Rs~ 210 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK---IQRSD 210 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc---ccccC
Confidence 34579999999999999975 899999999999999999999999999999999999999999998765432 12568
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCe-EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCCcee
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTY 882 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~-v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~~ 882 (1832)
|+.+||||||||||.|+++.++++..++..- .+.+.||.....+...|+.|++|+|+|||||+|+|.+ ..+.++++++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 9999999999999999999999999887654 4778999999999999999999999999999999976 4678999999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++++.||+.++..|+..+....... .....-....|.+++||||...+..++..-+.+|..
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e------------~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~ 358 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAE------------CKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVY 358 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchh------------cccccccHHHHhHhhhhhhHHHHHHHhhccccCcee
Confidence 99999999999999999999999884211000 000011124789999999999999999999999988
Q ss_pred EEEcc-----------------c--------CCCCcceEEEEEEcchhhHHHHHHHHHHc----CCCCCEEEEEcccchH
Q psy6409 963 VYIGS-----------------V--------GKPTERIEQIVYILSEQDKRKKLMEVLNR----GVKKPVIIFVNQKKGA 1013 (1832)
Q Consensus 963 v~~~~-----------------~--------~~~~~~i~q~~~~~~~~~k~~~L~~~l~~----~~~~~vIVFv~s~~~~ 1013 (1832)
+..+. . ...+..+.|.+..++..-++..|..+|.. ....++|||+.+.+.+
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 76211 0 12334556677777777777777776654 3456899999999999
Q ss_pred HHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCE
Q psy6409 1014 DVLAKGLEKL----------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1071 (1832)
Q Consensus 1014 ~~l~~~L~~~----------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~ 1071 (1832)
+.-+..|... +..+.-+||+|+|++|..+++.|....-.||.||||++||||+|+|.+
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9888877532 356788999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1072 VINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1072 VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||.||+|.+.++|+||+|||+|+|..|.+++|+.+.|..+++.|+.+.
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999888887753
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=558.88 Aligned_cols=407 Identities=44% Similarity=0.733 Sum_probs=375.6
Q ss_pred ChhhhcccCHHHHHHHHhccc-ceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcC
Q psy6409 1370 TEKSLDEMTERDWRIFREDYS-ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 1448 (1832)
Q Consensus 1370 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~Ap 1448 (1832)
....+..|+..+...++.... |.++|...|.|+.+|...|++..++..++++||..|+|||.+|||+++.|+|||++|.
T Consensus 331 e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvak 410 (997)
T KOG0334|consen 331 EVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAK 410 (997)
T ss_pred cchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeec
Confidence 345667777777777776665 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh
Q psy6409 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528 (1832)
Q Consensus 1449 TGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~ 1528 (1832)
||||||++|+|||+.++...|... ...||.+||++||++||.||++++++|+..+++++++++||.....+...++
T Consensus 411 TgSGKT~af~LPmirhi~dQr~~~----~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelk 486 (997)
T KOG0334|consen 411 TGSGKTLAFLLPMIRHIKDQRPLE----EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELK 486 (997)
T ss_pred cCCccchhhhcchhhhhhcCCChh----hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHh
Confidence 999999999999999988766543 4569999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCHHHHHHHHHccc---cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhc
Q psy6409 1529 LGCEIVIATPGRLIDVLENRY---LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 1605 (1832)
Q Consensus 1529 ~~~~IiVaTP~rl~~~l~~~~---~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~ 1605 (1832)
+++.|+|||||++++++-.+. .++.++.+||+||||+|++++|.|++..|+..++
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr---------------------- 544 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR---------------------- 544 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc----------------------
Confidence 999999999999999986543 4566777999999999999999999999998885
Q ss_pred cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHhC-CCCcEEEEEC
Q psy6409 1606 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRG-VKKPVIIFVN 1683 (1832)
Q Consensus 1606 ~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~-~~~~vIVFv~ 1683 (1832)
..+|+++||||+|..++.++...+..|..+.++........+.|.+.++. +..|+..|.++|... ...++||||.
T Consensus 545 ---pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 545 ---PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVD 621 (997)
T ss_pred ---hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 45899999999999999999999999999999988888899999999998 899999999999764 6789999999
Q ss_pred chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHh
Q psy6409 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRi 1763 (1832)
+...|..+...|.+.|+.+..+||+.++.+|..+++.|++|.+++||||+++++|+|++++.+|||||+|...++|+||+
T Consensus 622 ~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred CchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhh
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L 1806 (1832)
|||||+|..|.|++|+++.+.....+|...+..++ ..+|..|
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~-~~~P~~l 743 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK-QPVPKLL 743 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHHHHHHHhcc-CCCchHH
Confidence 99999999999999999988888888888776664 5666543
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=526.83 Aligned_cols=381 Identities=31% Similarity=0.483 Sum_probs=318.6
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhc--
Q psy6409 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM-- 799 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~-- 799 (1832)
-+..++.|..++||..++.+|..+||..||+||+.+||++..| .||++.|.||||||+||.|||+..+.........
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456788999999999999999999999999999999999999 7999999999999999999999855432221111
Q ss_pred --cccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--
Q psy6409 800 --EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-- 875 (1832)
Q Consensus 800 --~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-- 875 (1832)
......+.+||++||||||.|+...+..++...++++..++||.+...|...|+..++|||||||||+.++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1112334599999999999999999999999999999999999999999999999999999999999999976654
Q ss_pred -ccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHH-----
Q psy6409 876 -VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV----- 949 (1832)
Q Consensus 876 -~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v----- 949 (1832)
.+.++++||+||||+|++.|+...+..|+..+. -++....+|++.||||+.-..
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~--------------------e~~~~~qrQTlVFSATlt~~~~~~~~ 395 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLN--------------------EEQKNRQRQTLVFSATLTLVLQQPLS 395 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhh--------------------hhhcccccceEEEEEEeehhhcChhH
Confidence 577889999999999999999999999998773 123345689999999985322
Q ss_pred ----------------HHHHHH--hcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccc
Q psy6409 950 ----------------ERLARS--YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKK 1011 (1832)
Q Consensus 950 ----------------~~~~~~--~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~ 1011 (1832)
+.+.+. |...|.++...+.......+....+.|....|-..|..+|. ..++++|||||++.
T Consensus 396 ~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId 474 (731)
T KOG0347|consen 396 SSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSID 474 (731)
T ss_pred HhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHH
Confidence 222222 23456666555544444444444444544444444444444 35678999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhccc
Q psy6409 1012 GADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091 (1832)
Q Consensus 1012 ~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRa 1091 (1832)
.+..|+-+|..++++...+|+.|.|.+|...+++|++....||||||||+||||||+|.|||||..|.+.+-|+||.|||
T Consensus 475 ~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRT 554 (731)
T KOG0347|consen 475 CVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRT 554 (731)
T ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEecCCCchHHHHHHHHHhcCCc
Q psy6409 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1124 (1832)
Q Consensus 1092 GR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1124 (1832)
+|++..|..+.|+.+.+...+..|...|+....
T Consensus 555 ARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 555 ARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred ccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 999999999999999998888888887765433
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=546.89 Aligned_cols=363 Identities=37% Similarity=0.588 Sum_probs=329.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
+|++++|++.++++|.+.||..||++|.++||.++.|+|+|++||||||||++|++|+++++...+. ....++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-----~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-----RKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCceE
Confidence 6999999999999999999999999999999999999999999999999999999999998865321 12345799
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
|||+||++||.|+.+.+..++..+++.+..++||.....+...+..+++|+|+|||+|++++..+.+.+..+++||||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 99999999999999999999999999999999999988888788888999999999999999998888999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-HHHHHHHHhcCCCcEEEEcc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~v~~~~~~~l~~p~~v~~~~ 967 (1832)
|+|++++|...+..|...++ ...|+++||||++. .+..+...++.+|..+....
T Consensus 157 h~~l~~~~~~~~~~i~~~~~-------------------------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 211 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAETR-------------------------WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP 211 (434)
T ss_pred HHHhCCCcHHHHHHHHHhCc-------------------------cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC
Confidence 99999999999999987664 23689999999985 58888999999998887776
Q ss_pred cCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 968 VGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 968 ~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
.......+.+.+..+. ...+...|..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|
T Consensus 212 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 212 SRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred CcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 6655666777766654 466777888888766778999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
++|+++|||||+++++|||+|+|++|||||+|.+...|+||+|||||+|..|.|++|++.+|..++..+.+++..
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998888888876644
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=546.72 Aligned_cols=364 Identities=39% Similarity=0.663 Sum_probs=332.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
+|++++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 58899999999999999999999999999999999999999999999999999999999887542211 111234689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|||+||++||.|+.+.+..++..+++++..++||.+...+...+..+++|+|+||++|++++....+.++++++||||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 99999999999999999999999999999999999998888888888999999999999999988889999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|+|++++|...+..++..++ ...|+++||||++..+..+...++.+|..+.+...
T Consensus 159 h~ll~~~~~~~i~~il~~l~-------------------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 213 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLP-------------------------AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213 (456)
T ss_pred HHHhccccHHHHHHHHHhCC-------------------------ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc
Confidence 99999999999999988775 34689999999999999999999999988877666
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1644 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
......+.+.+..+....+...+..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 214 ~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 214 NTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293 (456)
T ss_pred cccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 55666788888888887888888888877777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
|+++|||||+++++|||+|+|++||||++|.+..+|+||+|||||+|..|.|++|+...|...+..+.+.+.
T Consensus 294 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 294 GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred CCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998887764
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=500.16 Aligned_cols=354 Identities=36% Similarity=0.564 Sum_probs=317.2
Q ss_pred CcccC--CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1404 NWKEA--SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1404 ~~~e~--~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
.|+++ +|++++++++...||...||+|..+||.++.++||++-|+||||||+||++|++..+...... ......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~----~~~~~v 80 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK----TPPGQV 80 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC----CCccce
Confidence 56665 466999999999999999999999999999999999999999999999999999988442211 011124
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCC-CCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccc--cccCCcee
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRY--LVLNQCTY 1557 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~-~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~--~~l~~v~l 1557 (1832)
-+|||+||||||.||...+..|... .++++.+++||.+..+....+. .++.|+|||||+|.+++.+.. +.+..+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 6999999999999999999998776 6789999999998887766664 468899999999999998854 44569999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
||+||||+++++||...++.|++.+| +.+++-+||||....+.++....+++|..
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LP-------------------------KQRRTGLFSATq~~~v~dL~raGLRNpv~ 215 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLP-------------------------KQRRTGLFSATQTQEVEDLARAGLRNPVR 215 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhcc-------------------------cccccccccchhhHHHHHHHHhhccCcee
Confidence 99999999999999999999999998 56789999999999999999999999999
Q ss_pred EEEcccCC--CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHH
Q psy6409 1638 VYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1638 v~i~~~~~--~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~ 1713 (1832)
+.+..... .+..+.-.|..|....|...++++|.....+++|||.+|...++..+..|... ...+..+||.|++..
T Consensus 216 V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 216 VSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred eeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 98877665 55567778888999999999999999988999999999999999999998875 678999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhH
Q psy6409 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786 (1832)
Q Consensus 1714 R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~ 1786 (1832)
|..+++.|++..-.||+|||+++||||||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.+..+
T Consensus 296 R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 296 RAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred HHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 9999999999889999999999999999999999999999999999999999999999999999999965433
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=554.42 Aligned_cols=368 Identities=39% Similarity=0.631 Sum_probs=332.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|.+++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|++..+...+... .....+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~--~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA--DRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 3699999999999999999999999999999999999999999999999999999999998876533211 11223689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-ccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llViD 1561 (1832)
+|||+||++||.|+++.+.+++..+++++..++|+.....+...+..+++|||+||++|++++.++ .+.+..+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999999999999999999999998887778888999999999999999765 4678999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|++++|...+..|+..++.. ...|+++||||++..+..+...++..|..+.+.
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~-----------------------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPER-----------------------GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccc-----------------------cCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 999999999999999999888621 246999999999999999999999998877776
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
........+.+.+.......+...+..++......++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|
T Consensus 224 ~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 224 TETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 65555667788888888888899999999877788999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++|+++|||||+++++|||+|+|++|||||+|.++.+|+||+|||||.|..|.|++|+.+.+...+.++.+.+.
T Consensus 304 r~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 304 QKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred HcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888877643
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=546.80 Aligned_cols=358 Identities=36% Similarity=0.578 Sum_probs=329.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|.+++|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|++..+.. ....++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~---------~~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---------KRFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---------ccCCce
Confidence 47999999999999999999999999999999999999999999999999999999999987642 123568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+|||+||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 9999999999999999999987654 789999999999988888888899999999999999999988899999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|++++|...+..++..+| ..+|+++||||+|+.+..+...++.+|..+.+.
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~-------------------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAP-------------------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCC-------------------------cccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999998886 346999999999999999999999999888776
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
... ....+.+.++.+....+...+..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|
T Consensus 210 ~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 210 STH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred cCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 544 3455788888888888999999999888888999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++|+++|||||+++++|||+|++++|||||+|.+..+|+||+|||||+|..|.|++|+.+.|...+..+.+.+.
T Consensus 289 ~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 289 ANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred HcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877653
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-54 Score=554.04 Aligned_cols=359 Identities=40% Similarity=0.658 Sum_probs=330.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
..+|.+++|++.++++|.++||.+|+|+|.++||.++.|+|+|++||||||||+||++|++..+.. ...++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~---------~~~~~ 75 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP---------ELKAP 75 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------ccCCC
Confidence 346999999999999999999999999999999999999999999999999999999999987643 22467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
++|||+||++||.|++..+..+...+ ++.++.++||.+...+...+..+++|||+||++|.+++.+..+.++++.+|||
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 89999999999999999999987655 78999999999988888888889999999999999999998899999999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|++++|...+..|+..+| ...|+++||||+|..+..+...|+.+|..+.+
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp-------------------------~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i 210 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIP-------------------------EGHQTALFSATMPEAIRRITRRFMKEPQEVRI 210 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCC-------------------------CCCeEEEEEccCChhHHHHHHHHcCCCeEEEc
Confidence 99999999999999999998886 34689999999999999999999999988887
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
.........+.+.+..+....|...|..++......++||||+|+..|..|+..|...++.+..+||+|++.+|..+++.
T Consensus 211 ~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~ 290 (629)
T PRK11634 211 QSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 (629)
T ss_pred cCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHH
Confidence 76666666778888888888888999999987777899999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+++.+...+..+...+
T Consensus 291 Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~ 364 (629)
T PRK11634 291 LKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 (629)
T ss_pred HhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998877777776553
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=541.07 Aligned_cols=372 Identities=37% Similarity=0.590 Sum_probs=333.1
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
.....|.+++|++.++++|.+.||..||++|.++|+.+++|+|+|++||||||||++|++|++..+...+... .....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~--~~~~~ 161 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK--ERYMG 161 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--ccccC
Confidence 3456899999999999999999999999999999999999999999999999999999999999886533211 11123
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccCCceeE
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYI 883 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~l 883 (1832)
.+++|||+||++||.|+.+.++.+...+++.+..++||.+...+...+. ..++|+|+||++|++++.++...++.+++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 6899999999999999999999999999999999999988777766654 468999999999999998888899999999
Q ss_pred EEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
||||||++++++|.+.+..|+..++. ....|++++|||++..+..++..++.+|..+
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~-----------------------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v 298 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPR-----------------------KEERQTLLFSATFTDDVMNLAKQWTTDPAIV 298 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCC-----------------------CCCceEEEEEeecCHHHHHHHHHhccCCEEE
Confidence 99999999999999999999887752 1236999999999999999999999999888
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 964 ~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
.+.........+.+.+..+....+...|..++......++||||+++..|+.+++.|...++.+..+||++++.+|..++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 378 (475)
T PRK01297 299 EIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTL 378 (475)
T ss_pred EeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 77766666666778888877888888888888877778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
+.|++|+++|||||+++++|||||+|++||+||+|.++.+|+||+|||||.|..|.+++|++++|..++..++.++..
T Consensus 379 ~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~ 456 (475)
T PRK01297 379 EGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGR 456 (475)
T ss_pred HHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888776543
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=532.44 Aligned_cols=362 Identities=37% Similarity=0.590 Sum_probs=328.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
+|++++|++.++++|..+||..|+|+|.++|+.++.|+|++++||||||||++|++|++.++...+. ....++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-----~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-----RKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCceE
Confidence 5899999999999999999999999999999999999999999999999999999999998865432 12245789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|||+||++||.|+++.+..++..+++++..++||.....+...+..+++|+|+||++|.+++....+.+.++++||||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 99999999999999999999999999999999999988887777888999999999999999998888999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHHHHHHhcCCCcEEEEcc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
|+|++++|...+..|...++ ...|+++||||++. .+..+...++.+|..+.+..
T Consensus 157 h~~l~~~~~~~~~~i~~~~~-------------------------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 211 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAETR-------------------------WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP 211 (434)
T ss_pred HHHhCCCcHHHHHHHHHhCc-------------------------cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC
Confidence 99999999999999887664 33689999999985 57888888888998887776
Q ss_pred cCCCCcceEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1643 VGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1643 ~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
.......+.+.+..+. ...+...|..++......++||||+++.+|+.++..|...++.+..+||+|++.+|..+++.|
T Consensus 212 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 212 SRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred CcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 6666666777766655 466778888888766778999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++|+++|||||+++++|||+|+|++|||||+|.+...|+||+|||||+|..|.|++|++..|...+..+..++.
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887654
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=490.97 Aligned_cols=364 Identities=32% Similarity=0.518 Sum_probs=329.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|.+.+++++.+.||..||-||+.|||.++.|+|+++.|.||||||++|+||+++.|....... ....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---DGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---cccccce
Confidence 5899999999999999999999999999999999999999999999999999999999999987644322 3567999
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCC--CeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 884 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~--i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lV 884 (1832)
++||+||||||+|++..+.++...++ ++++-+..+++.......|...++|||+||++++.++..+. ..+..+.++|
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999999999999999876654 67777777787777777888889999999999999998887 6889999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
+||||.|+..||+.++..|...+|. ..|++++|||+..++..+-+.++.+|+.+.
T Consensus 176 vDEADLllsfGYeedlk~l~~~LPr-------------------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLk 230 (569)
T KOG0346|consen 176 VDEADLLLSFGYEEDLKKLRSHLPR-------------------------IYQCFLMSATLSDDVQALKKLFLHNPVILK 230 (569)
T ss_pred echhhhhhhcccHHHHHHHHHhCCc-------------------------hhhheeehhhhhhHHHHHHHHhccCCeEEE
Confidence 9999999999999999999999983 369999999999999999999999999987
Q ss_pred EcccCCC-CcceEEEEEEcchhhHHHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 965 IGSVGKP-TERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 965 ~~~~~~~-~~~i~q~~~~~~~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~i 1042 (1832)
+.....+ ...+.|+...|.+.+|+..+..+++- .-.+++|||||+.+.|..|--+|+..|++.+++.|.|+...|..+
T Consensus 231 l~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHI 310 (569)
T ss_pred eccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhH
Confidence 7665544 46789999999999999888888763 357789999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEeccc-----------------------------------ccccCCCcCcCEEEEcCCCCCHhHHHHH
Q psy6409 1043 LNSLKGGSKDILVATDV-----------------------------------AGRGIDIKDVSMVINYDMAKSIEDYTHR 1087 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv-----------------------------------~~rGlDip~v~~VI~~d~p~s~~~yvQr 1087 (1832)
++.|..|-++||||||. .+||||+.+|+.|||||+|.+..+|+||
T Consensus 311 i~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHR 390 (569)
T KOG0346|consen 311 IEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHR 390 (569)
T ss_pred HHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHh
Confidence 99999999999999992 3599999999999999999999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
+|||+|++++|.+++|+.+.+..-...|+..+
T Consensus 391 vGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 391 VGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred ccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 99999999999999999999877666666654
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=530.87 Aligned_cols=386 Identities=36% Similarity=0.573 Sum_probs=339.8
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
....|.+++|++.++++|.++||..|+|+|.++|+.++.|+|+|++||||||||++|++|++..+...+... ......
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~--~~~~~~ 162 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK--ERYMGE 162 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--ccccCC
Confidence 345788899999999999999999999999999999999999999999999999999999998876543211 011235
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llV 1559 (1832)
+++|||+||++||.|+++.++.+...+++++..++||.+...+...+. ..++|||+||++|.+++..+...++++++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 799999999999999999999999889999999999988776665554 4689999999999999999889999999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
|||||++++++|.+.+..|+..++.. ...|++++|||++..+..+...++.+|..+.
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~-----------------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~ 299 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRK-----------------------EERQTLLFSATFTDDVMNLAKQWTTDPAIVE 299 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCC-----------------------CCceEEEEEeecCHHHHHHHHHhccCCEEEE
Confidence 99999999999999999998877521 2368999999999999999999999998887
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.........+.+.+..+....+...+..++......++||||+++.+|+.++..|...++.+..+||++++.+|..+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~ 379 (475)
T PRK01297 300 IEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLE 379 (475)
T ss_pred eccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 77666666667777777777888888888888777789999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCC-
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP- 1798 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~- 1798 (1832)
.|++|+++|||||+++++|||||+|++||+|++|.|+.+|+||+|||||.|..|.+++|++++|...+..+.+++....
T Consensus 380 ~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 380 GFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred HHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888877764332
Q ss_pred CCCCChhhcCCCC
Q psy6409 1799 VSTCPPELLNHPD 1811 (1832)
Q Consensus 1799 ~~~~~~~L~~h~~ 1811 (1832)
..-.|.+|+.+..
T Consensus 460 ~~~~~~~~~~~~~ 472 (475)
T PRK01297 460 CEMPPAELLKPVP 472 (475)
T ss_pred ccCCcHHHhhhhh
Confidence 2345556776543
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=504.74 Aligned_cols=379 Identities=31% Similarity=0.496 Sum_probs=319.3
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhc-c--
Q psy6409 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR-M-- 1474 (1832)
Q Consensus 1399 p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~-~-- 1474 (1832)
+..+..|..++||..++.+|..+||..|||||..++|+++.| .|+++.|.||||||+||.+||+..+........ .
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 345678999999999999999999999999999999999999 799999999999999999999985443222111 1
Q ss_pred -cccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc---
Q psy6409 1475 -EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--- 1550 (1832)
Q Consensus 1475 -~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~--- 1550 (1832)
......+.+||++||||||.|+...+..++...++++..++||.+...|...++..++|||||||||+.++.....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 1112234599999999999999999999999999999999999999999999999999999999999999977554
Q ss_pred ccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHH------
Q psy6409 1551 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV------ 1624 (1832)
Q Consensus 1551 ~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~------ 1624 (1832)
.+.++.+||+||||+|++.|+...+..|+..+.. .+....+|++.||||+.-..
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e--------------------~~~~~qrQTlVFSATlt~~~~~~~~~ 396 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE--------------------EQKNRQRQTLVFSATLTLVLQQPLSS 396 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh--------------------hhcccccceEEEEEEeehhhcChhHH
Confidence 6788999999999999999999999999988751 22345679999999985332
Q ss_pred ---------------HHHHHH--hcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhH
Q psy6409 1625 ---------------ERLARS--YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1625 ---------------~~~~~~--~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~ 1687 (1832)
+.++.. +...|..+...+.......+......|+...|-.+|+.+|..+ ++++|||||++..
T Consensus 397 ~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~ 475 (731)
T KOG0347|consen 397 SRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDC 475 (731)
T ss_pred hhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHH
Confidence 122222 2235555655554444444444444555555655665566544 5789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccc
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaG 1767 (1832)
+..|+-+|..++++...+|+.|.|.+|...++.|++....|||||||++||+|||+|+|||||.+|.+.+.|+||.|||+
T Consensus 476 vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTA 555 (731)
T KOG0347|consen 476 VKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTA 555 (731)
T ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeCCChhHHHHHHHHhhcCC
Q psy6409 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1798 (1832)
Q Consensus 1768 R~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1798 (1832)
|+++.|..++||.+.+...|..|..-|..-+
T Consensus 556 RA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 556 RANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred cccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 9999999999999999999999988776654
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-53 Score=488.58 Aligned_cols=377 Identities=31% Similarity=0.502 Sum_probs=319.0
Q ss_pred cCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
-..|.++||++-+...|+. +++..||.+|.++||.+++|+|++|-|+||||||++|++|+++.+..++..- ....|
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki---~Rs~G 211 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI---QRSDG 211 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc---cccCC
Confidence 3568899999999999985 8999999999999999999999999999999999999999999988754321 24679
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCe-EEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-ccccCCceeE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYI 1558 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~-v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~ll 1558 (1832)
+++||||||||||.|+|+.++++...+..- .+.+.||-....+...++.|++|+|+|||||+++|.+. .+.++++.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 999999999999999999999998776643 35678888888888899999999999999999999884 5778999999
Q ss_pred EEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v 1638 (1832)
||||||+|++.||+..+..|+..+...... .+.........|.+++|||+...+..++...|.+|..+
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~------------e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I 359 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNA------------ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYI 359 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccch------------hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceee
Confidence 999999999999999999999988532110 01111122347899999999999999999999999887
Q ss_pred EEccc-------------------------CCCCcceEEEEEEcchhhHHHHHHHHHHhC----CCCcEEEEECchhHHH
Q psy6409 1639 YIGSV-------------------------GKPTERIEQIVYILSEQDKRKKLMEVLNRG----VKKPVIIFVNQKKGAD 1689 (1832)
Q Consensus 1639 ~i~~~-------------------------~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~----~~~~vIVFv~s~~~a~ 1689 (1832)
..... ...+..+.|.|..++..-++..|..+|... ...++|||+++.+.++
T Consensus 360 ~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 360 SLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred eccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 62110 112234456677777777777777776543 5568999999999999
Q ss_pred HHHHHHHHc----------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEE
Q psy6409 1690 VLAKGLEKL----------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMV 1747 (1832)
Q Consensus 1690 ~l~~~L~~~----------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~V 1747 (1832)
.-|..|... +..+.-+||+|+|++|..+++.|....-.||.||||++||+|+|+|.+|
T Consensus 440 FHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~v 519 (708)
T KOG0348|consen 440 FHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLV 519 (708)
T ss_pred HHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeE
Confidence 988877542 3457789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1748 I~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|.||+|.++++|+||+||++|+|.+|.+++|+.+.+.+++..+...
T Consensus 520 VQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 520 VQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred EEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999877666543
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=515.05 Aligned_cols=363 Identities=32% Similarity=0.556 Sum_probs=325.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
...+|++++|++.++++|.++||..|+|+|.+||+.+++|+|++++||||||||++|++|++..+.. ...+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~---------~~~~ 96 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY---------DLNA 96 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------CCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999987632 1346
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
+++|||+||++||.|+.+.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.++++++|||
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 78999999999999999999999888889999999999888777778888999999999999999988888999999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||++++.+|...+..++..++ ...|++++|||+|+.+..+...++.+|..+.+
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 231 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLP-------------------------PDVQVALFSATMPNEILELTTKFMRDPKRILV 231 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCC-------------------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999988888887664 34799999999999999999999998887766
Q ss_pred cccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
.........+.+.+..+.. ..+...+..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~ 311 (401)
T PTZ00424 232 KKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMR 311 (401)
T ss_pred CCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHH
Confidence 5544444556666555543 446667777777666778999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|..|.|++|+++++...+..+.++++.+
T Consensus 312 ~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 312 EFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred HHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888877554
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=467.12 Aligned_cols=364 Identities=30% Similarity=0.497 Sum_probs=326.0
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
..+++|++++|.|++++.|..++|..|+.||..|+|.++.. +|+|.++..|+|||.||+|.+|..+ ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv---------d~~ 157 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV---------DPD 157 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc---------Ccc
Confidence 45788999999999999999999999999999999999985 8999999999999999999999765 234
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCCce
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCT 881 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~ 881 (1832)
...|.++||+||||||.|+.+.+.++++..++...+.+-|.....- -.-..+|+|+|||.+.|++.. +.+.++.++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 5689999999999999999999999999999988888777621111 011368999999999999988 888999999
Q ss_pred eEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 882 YIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 882 ~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
.+|+||||.|++ .||+++-..|...+| ...|+++||||+...+..|+...+.+|
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP-------------------------~~~QllLFSATf~e~V~~Fa~kivpn~ 289 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLP-------------------------RNQQLLLFSATFVEKVAAFALKIVPNA 289 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcC-------------------------CcceEEeeechhHHHHHHHHHHhcCCC
Confidence 999999999987 679988888887776 347999999999999999999999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 961 ATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039 (1832)
Q Consensus 961 ~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 1039 (1832)
..+.+.........+.|++..|. ..+|+..|.++.....-++.||||.++..|.+|+..|...|+.|..+||+|.-.+|
T Consensus 290 n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 290 NVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR 369 (477)
T ss_pred ceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH
Confidence 99999999999999999888775 56788888887766677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC------CHhHHHHHhcccccCCCCcEEEEEecCCCc-hHH
Q psy6409 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS-HLF 1112 (1832)
Q Consensus 1040 ~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~-~~~ 1112 (1832)
..+++.|+.|..+|||+|++++||||++.|++|||||+|. +.+.|+||+|||||+|+.|.+|.|+...++ ..+
T Consensus 370 ~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 370 AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred HHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 9999999999999999999999999999999999999996 789999999999999999999999998765 567
Q ss_pred HHHHHHHhcCCcc
Q psy6409 1113 YDLKQMMISSPVT 1125 (1832)
Q Consensus 1113 ~~l~~~l~~~~~~ 1125 (1832)
+.|.++++..+..
T Consensus 450 n~iq~~F~~~i~~ 462 (477)
T KOG0332|consen 450 NKIQKHFNMKIKR 462 (477)
T ss_pred HHHHHHHhhccee
Confidence 7888888765443
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-52 Score=470.62 Aligned_cols=367 Identities=32% Similarity=0.521 Sum_probs=329.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|++++|.+.+++++.+.||..||-||..|||.+++|+|+++.|.||||||.||++|+++.+...... .....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t---~~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT---NDGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhc---ccccccce
Confidence 579999999999999999999999999999999999999999999999999999999999988764332 24567999
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCC--CeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 1559 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g--~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llV 1559 (1832)
++|||||+|||+|++..+.++....+ ++++-+.++.+.......+...++|||+||++++.++..+. ..+..+.++|
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999999999999998755443 56667776777666667788889999999999999998887 6788999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
+||||.|+..||.+.+..|.+.+| +..|.+++|||+...+..+-+.++.+|..+.
T Consensus 176 vDEADLllsfGYeedlk~l~~~LP-------------------------r~~Q~~LmSATl~dDv~~LKkL~l~nPviLk 230 (569)
T KOG0346|consen 176 VDEADLLLSFGYEEDLKKLRSHLP-------------------------RIYQCFLMSATLSDDVQALKKLFLHNPVILK 230 (569)
T ss_pred echhhhhhhcccHHHHHHHHHhCC-------------------------chhhheeehhhhhhHHHHHHHHhccCCeEEE
Confidence 999999999999999999999998 4479999999999999999999999999987
Q ss_pred EcccCCC-CcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 1640 IGSVGKP-TERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1640 i~~~~~~-~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~i 1717 (1832)
+.....+ ...+.|++..|.+.+|...++.+++-. -.+++|||||++..|..|-..|...|+..++++|.|+...|..+
T Consensus 231 l~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHI 310 (569)
T ss_pred eccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhH
Confidence 7665444 467889999999999999888887643 56889999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEccc-----------------------------------ccccCCCCCCCEEEEeCCCCCHHHHHHH
Q psy6409 1718 LNSLKGGSKDILVATDV-----------------------------------AGRGIDIKDVSMVINYDMAKSIEDYTHR 1762 (1832)
Q Consensus 1718 l~~F~~g~~~VLVATdv-----------------------------------l~~GIDip~v~~VI~~d~P~s~~~yiQR 1762 (1832)
+++|..|-++|+||||. .+||||+.+|+.|||||+|.++.+||||
T Consensus 311 i~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHR 390 (569)
T KOG0346|consen 311 IEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHR 390 (569)
T ss_pred HHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHh
Confidence 99999999999999992 4699999999999999999999999999
Q ss_pred hcccccCCCccEEEEEeeCCChhHHHHHHHHhhcC
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1797 (1832)
+|||+|+++.|.+++|+.+.+......+...+...
T Consensus 391 vGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 391 VGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred ccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 99999999999999999999877666676666543
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=506.15 Aligned_cols=370 Identities=32% Similarity=0.560 Sum_probs=327.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
..+|++++|++.++++|..+||..|+|+|.++|+.++.|+|++++||||||||++|++|++..+.. ...+.
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~---------~~~~~ 97 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY---------DLNAC 97 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------CCCCc
Confidence 567999999999999999999999999999999999999999999999999999999999977632 12467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++|||+||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+...++++++||||
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 89999999999999999999998888888999999988877777777789999999999999999888889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++++.+|...+..++..++ ...|++++|||+|+.+..+...++..|..+.+.
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 232 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLP-------------------------PDVQVALFSATMPNEILELTTKFMRDPKRILVK 232 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCC-------------------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999888888877664 346899999999999998888999888877665
Q ss_pred ccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1642 SVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
........+.+.+..+.. ..+...+..++......++||||+++.+|+.++..|...++.+..+||++++.+|..+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~ 312 (401)
T PTZ00424 233 KDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMRE 312 (401)
T ss_pred CCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHH
Confidence 544444556666555543 4566777777777677889999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCC
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS 1800 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~ 1800 (1832)
|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++++...+..+.+.+... ..
T Consensus 313 f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~-~~ 391 (401)
T PTZ00424 313 FRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ-IE 391 (401)
T ss_pred HHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887766533 34
Q ss_pred CCChhh
Q psy6409 1801 TCPPEL 1806 (1832)
Q Consensus 1801 ~~~~~L 1806 (1832)
.+++..
T Consensus 392 ~~~~~~ 397 (401)
T PTZ00424 392 EMPMEV 397 (401)
T ss_pred ccCcch
Confidence 455443
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=486.11 Aligned_cols=385 Identities=34% Similarity=0.520 Sum_probs=342.7
Q ss_pred HHHhhccceecCCCCCCcccCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHH
Q psy6409 709 IFREDYSITIKGGKVPDPVRNWKE----ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 709 ~~~~~~~i~~~~~~~p~p~~~f~~----~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ll 784 (1832)
..|+.+.+.+.|.++|+|+.+|.+ ....+.+++.+...||..|+|+|.+|+|.++.++|++.|||||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 457778899999999999999997 4689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc--CCCCCeEEEEEcCCc-hHHHHHHHhcCCceeec
Q psy6409 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLS-REEQGFRLRLGCEIVIA 861 (1832)
Q Consensus 785 pil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~--~~~~i~v~~~~Gg~~-~~~~~~~l~~~~~IlV~ 861 (1832)
|++.+|..+.. .....|-+++|+.|||+||.|++.++.++. ...++++........ ...........++|+|+
T Consensus 193 Pil~~L~~~~~----~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 193 PILQHLKDLSQ----EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred HHHHHHHHhhc----ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 99999865432 234568899999999999999999999998 666666665544422 22233333446899999
Q ss_pred CHHHHHHHHHccc--cccCCceeEEEecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceE
Q psy6409 862 TPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 938 (1832)
Q Consensus 862 TP~rL~d~l~~~~--~~l~~~~~lViDEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~ 938 (1832)
||-++..++..+. +.+..+.++|+||||++++. +|..++..|+..+.. +...+
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s------------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS------------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC------------------------cchhh
Confidence 9999999998775 68999999999999999998 899999999887742 33567
Q ss_pred EEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHH
Q psy6409 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLA 1017 (1832)
Q Consensus 939 v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~ 1017 (1832)
-+||||++.+++.++.....++..+.++........+.|...++ ++..|+..+.+++..+..+|+|||+.+.+.|..|+
T Consensus 325 a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 325 ALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 79999999999999999999999999999888888888865554 67889999999999999999999999999999999
Q ss_pred HHH-HHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1018 KGL-EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1018 ~~L-~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
..| .-.++++.++||..++.+|..++++|+.|+++|||||++++||||+-+|++|||||+|.+..+|+||+||+||+|+
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 999 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1097 EGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1097 ~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
.|.|++||+..|..++..+...+..
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHH
Confidence 9999999999999999999887754
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=461.61 Aligned_cols=360 Identities=32% Similarity=0.571 Sum_probs=333.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+.+|++++|++.|+..|...||++|+.||+.||+.+..|.|+++.+++|+|||.+|.+++++.+. ......
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD---------~~~ke~ 95 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID---------MSVKET 95 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC---------cchHHH
Confidence 34899999999999999999999999999999999999999999999999999999999998762 123456
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH-hcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l-~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
.|++++|||+||+|+.+....++..++.++..++||.....+...+ ..+++|+|+|||++.+.+.+..+....+.++|+
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 7999999999999999999999999999999999999877554444 446999999999999999999888889999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||.|+..||.+++..|+..+| ...|++++|||+|+++..+.+.|+.+|..+.+
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp-------------------------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~v 230 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELP-------------------------SDVQVVLLSATMPSDVLEVTKKFMREPVRILV 230 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcC-------------------------cchhheeecccCcHHHHHHHHHhccCceEEEe
Confidence 99999999999999999999997 23599999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.........+.|++..+...+|+..|..+.. .-.+.+||||++..+..+...|...++.+..+||.|.+.+|..++..
T Consensus 231 kk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~e 308 (397)
T KOG0327|consen 231 KKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMRE 308 (397)
T ss_pred cchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHH
Confidence 8888888889999998888889999999888 56679999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|+.|..+|||.|++++||+|+-.+++||||++|...++|+||+||+||+|.+|.++.|++.++...+..+.++.+..
T Consensus 309 f~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~ 385 (397)
T KOG0327|consen 309 FRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP 385 (397)
T ss_pred hhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888766543
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=448.48 Aligned_cols=360 Identities=30% Similarity=0.506 Sum_probs=320.5
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
....+|++++|.|++++.|..++|..|+.||..|+|.++.. +|+|.++..|+|||.||.|.||..+ ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv---------d~~ 157 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV---------DPD 157 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc---------Ccc
Confidence 45778999999999999999999999999999999999975 8999999999999999999998654 223
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc-cccccCCce
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCT 1556 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v~ 1556 (1832)
...|.+++|+||+|||.|+...+.+.|+..++.+...+-|....... .-..+|+|+|||.+.+++.. ..+.++.+.
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 46789999999999999999999999999888877766555211110 01258999999999999987 788899999
Q ss_pred eEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1557 YIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1557 llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
.+|+||||.|++ .||.++-..|...+| +..|+++||||+...+..++...+.++
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP-------------------------~~~QllLFSATf~e~V~~Fa~kivpn~ 289 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLP-------------------------RNQQLLLFSATFVEKVAAFALKIVPNA 289 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcC-------------------------CcceEEeeechhHHHHHHHHHHhcCCC
Confidence 999999999987 679998888887776 457999999999999999999999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R 1714 (1832)
..+.+.........|.|++..|. ..+|...|+++.....-++.||||.++++|.+|+..|...|+.|.++||.|+-.+|
T Consensus 290 n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 290 NVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR 369 (477)
T ss_pred ceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH
Confidence 99999999999999999887775 56788999998777778899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC------CHHHHHHHhcccccCCCccEEEEEeeCCC-hhHH
Q psy6409 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLF 1787 (1832)
Q Consensus 1715 ~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~ 1787 (1832)
..+++.|+.|..+|||+|++++||||++.|++|||||+|. +.+.|+||||||||+|+.|.++.|+++.+ ...+
T Consensus 370 ~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 370 AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred HHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 9999999999999999999999999999999999999995 78999999999999999999999999875 5666
Q ss_pred HHHHHHhhc
Q psy6409 1788 YDLKQMMIS 1796 (1832)
Q Consensus 1788 ~~l~~~l~~ 1796 (1832)
..+.+++..
T Consensus 450 n~iq~~F~~ 458 (477)
T KOG0332|consen 450 NKIQKHFNM 458 (477)
T ss_pred HHHHHHHhh
Confidence 666665533
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=461.69 Aligned_cols=365 Identities=35% Similarity=0.565 Sum_probs=341.4
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
-.+|..+||...++++|.+.||..|||||++.||.+++++|++..|-||||||.||+||+++.+..+. ..|.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--------~~g~ 91 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--------QTGL 91 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------cccc
Confidence 45799999999999999999999999999999999999999999999999999999999999886532 4578
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+++++.|||+||.|+.+.++.++...++++.+++||.+..+|...+..+++||+||||+++.+.-.-.+.|+.+.|||+|
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999987776666789999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+++.+||.+++..++.++| ..+|+++||||+|..+..|++..+.+|..+.++
T Consensus 172 Eadrlfemgfqeql~e~l~rl~-------------------------~~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLP-------------------------ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCC-------------------------CcceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 9999999999999999999997 236999999999999999999999999999988
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
-.......++..+..+...+|...|+.++... .+.+++|||.++.+++.+...|...|+.+..++|.|.+..|..-+..
T Consensus 227 vetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 227 VETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred hhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 77888888888999999999999999999764 45689999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCc
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1124 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1124 (1832)
|+.++..+||.||+++||+|||-.+.|||||+|.+..-|+||+||+.|+|..|.++.|+++.+..++.+|.-++....+
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888776655433
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=470.15 Aligned_cols=398 Identities=33% Similarity=0.514 Sum_probs=352.6
Q ss_pred HHHhcccceecCCCCCCCcCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q psy6409 1384 IFREDYSITIKGGKVPDPVRNWKEA----SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1384 ~~~~~~~i~~~~~~~p~p~~~~~e~----~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~l 1459 (1832)
..++.+.+.+.|..+|+|+.+|.++ ...+.+++.+...+|..|+|+|.+|+|.++.++|++.|||||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 3466788999999999999999984 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc--CCCCCeEEEEECCcch-HHHHHHhhcCCcEEEe
Q psy6409 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSR-EEQGFRLRLGCEIVIA 1536 (1832)
Q Consensus 1460 pil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~--~~~g~~v~~l~gg~~~-~~~~~~l~~~~~IiVa 1536 (1832)
|++.++..... .....|-+++|++||++||.|++.++.++. ...+.++........+ ....+.....++|+|+
T Consensus 193 Pil~~L~~~~~----~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 193 PILQHLKDLSQ----EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred HHHHHHHHhhc----ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 99998876432 233568899999999999999999999998 5666666655544332 2333444556899999
Q ss_pred CHHHHHHHHHccc--cccCCceeEEEccchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceE
Q psy6409 1537 TPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 1613 (1832)
Q Consensus 1537 TP~rl~~~l~~~~--~~l~~v~llViDEaH~ll~~-gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~ 1613 (1832)
||-++..++.... +.+..|.++|+||||++++. +|..++..|++.+.. +...+
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s------------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS------------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC------------------------cchhh
Confidence 9999999998876 67899999999999999998 899999999987752 23456
Q ss_pred EEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE-EEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHH
Q psy6409 1614 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV-YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLA 1692 (1832)
Q Consensus 1614 v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~-~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~ 1692 (1832)
-+||||++..+++++.....++..+.++........+.|.. +...+..|+..+.+++.....+|+|||+.+.+.|..|+
T Consensus 325 a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 325 ALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 78999999999999999999999999998888888888764 45567889999999999999999999999999999999
Q ss_pred HHH-HHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC
Q psy6409 1693 KGL-EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1693 ~~L-~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~ 1771 (1832)
..| .-.++.+.++||..++.+|..+++.|+.|+++|||||++++||+|+-+|++|||||+|.+..+|+||+||+||+|+
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 999 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCC
Q psy6409 1772 EGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1810 (1832)
Q Consensus 1772 ~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~ 1810 (1832)
.|.|++|+++.|......+.+.+..+. ..||.++....
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~sG-~evpe~~m~~~ 522 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQSG-CEVPEKIMGIK 522 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHHcC-CcchHHHHhhh
Confidence 999999999999999999999988875 79999877654
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=454.44 Aligned_cols=376 Identities=27% Similarity=0.421 Sum_probs=312.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHc---------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 736 PTEILEIIEKIGYAEPTPIQRQAIPIGLQ---------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 736 ~~~l~~~l~~~g~~~pt~iQ~~ai~~il~---------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...+..++.++++...+|+|.+++|.++. .+||+|.||||||||++|.|||++.+..-+ .+.-
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~--------v~~L 216 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP--------VKRL 216 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC--------ccce
Confidence 34566779999999999999999999863 589999999999999999999999875422 2457
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcC-----CceeecCHHHHHHHHH-ccccccCCc
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-----CEIVIATPGRLIDVLE-NRYLVLNQC 880 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~-----~~IlV~TP~rL~d~l~-~~~~~l~~~ 880 (1832)
++|||+||++||.|++..|.+++...|+.|+.+.|-.+...+...|... .+|+|+|||||+|+|. .+.+.|+++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~L 296 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHL 296 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhc
Confidence 8999999999999999999999999999999999999988887777643 3899999999999998 567899999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCC-------C-C-chhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP-------D-T-EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~-------~-~-~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
+|+||||||+|++..|..++-.++..+....... . . ........++..+.......+.+.||||+.....+
T Consensus 297 rfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K 376 (620)
T KOG0350|consen 297 RFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK 376 (620)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH
Confidence 9999999999999998888888777664331100 0 0 01111222222222334556789999999988888
Q ss_pred HHHHhcCCCcEEEEc----ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHH----Hc
Q psy6409 952 LARSYLRRPATVYIG----SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE----KL 1023 (1832)
Q Consensus 952 ~~~~~l~~p~~v~~~----~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~----~~ 1023 (1832)
+...-+..|..+.+. .....+..+.+....+...-+...+..++....-.++|+|+++...+..++..|. ..
T Consensus 377 l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~ 456 (620)
T KOG0350|consen 377 LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSD 456 (620)
T ss_pred HhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccc
Confidence 888888888554443 3445556677777777777788888888888888899999999999999999887 23
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
.+++..+.|+++...|...++.|..|.++||||||+++||||+.+|+.|||||+|.+...|+||+|||||+|..|.|+++
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tl 536 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITL 536 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEe
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHH
Q psy6409 1104 CTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~~l 1119 (1832)
++..+...+..+-+-.
T Consensus 537 l~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKT 552 (620)
T ss_pred eccccchHHHHHHHHh
Confidence 9999988877765543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-48 Score=505.85 Aligned_cols=353 Identities=21% Similarity=0.277 Sum_probs=283.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 734 ~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
.|++.+.++|++.||++|+++|.+|||.+++|+|+|++||||||||+||+||+++.+.. ..++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~----------~~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD----------DPRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh----------CCCcEEEEEcC
Confidence 48899999999999999999999999999999999999999999999999999988743 23678999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc----ccccCCceeEEEecch
Q psy6409 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR----YLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 814 treLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~----~~~l~~~~~lViDEaH 889 (1832)
|||||.|+...++.++ ..++++..+.|+.+.. +...+..+++|||+||++|...+... ...++++++|||||||
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 9999999999999987 4578888888887744 44556678999999999997544321 1247899999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 969 (1832)
Q Consensus 890 ~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~ 969 (1832)
+|.+ .|+..+..++.++.. +. .......|+++||||+++..+ ++..++..|..+ +....
T Consensus 168 ~~~g-~fg~~~~~il~rL~r---------------i~---~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~ 226 (742)
T TIGR03817 168 SYRG-VFGSHVALVLRRLRR---------------LC---ARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG 226 (742)
T ss_pred hccC-ccHHHHHHHHHHHHH---------------HH---HhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC
Confidence 9976 599998888877631 11 112345799999999998765 677777777544 33222
Q ss_pred CCCcceEEEEEEcc-----------------hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--------C
Q psy6409 970 KPTERIEQIVYILS-----------------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--------G 1024 (1832)
Q Consensus 970 ~~~~~i~q~~~~~~-----------------~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--------g 1024 (1832)
.+...... ..+.. ...+...+..++.. ..++||||+|++.|+.++..|... +
T Consensus 227 ~~~~~~~~-~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~ 303 (742)
T TIGR03817 227 SPRGARTV-ALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLA 303 (742)
T ss_pred CCcCceEE-EEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 22222221 11111 12344555555553 568999999999999999998764 5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1025 ~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
..+..+||++++++|..+++.|++|++++||||+++++|||||++++|||||+|.++.+|+||+|||||.|..|.+++++
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC--CchHHHHHHHHHhcC
Q psy6409 1105 TKD--DSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1105 ~~~--d~~~~~~l~~~l~~~ 1122 (1832)
+.+ |..++..+...+...
T Consensus 384 ~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred CCChHHHHHHhCHHHHhcCC
Confidence 743 555566565555443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=443.56 Aligned_cols=367 Identities=31% Similarity=0.572 Sum_probs=336.2
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+.+|++++|++.+++.+..+||..|+.||..||..+..|.|+++.+.+|+|||.+|.+++++.+-- .....
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---------~~ke~ 95 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---------SVKET 95 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc---------chHHH
Confidence 348999999999999999999999999999999999999999999999999999999999987621 22456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh-hcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l-~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
.||+++||++||.|+.+....++...+.++..++||.+...+...+ ..+++|+|+|||++.+++....+....+.++|+
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 7999999999999999999999999999999999988876444444 446899999999999999999888889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||.|+..||.+++..|+..+| ...|++++|||+|.++....+.++.+|..+.+
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp-------------------------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~v 230 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELP-------------------------SDVQVVLLSATMPSDVLEVTKKFMREPVRILV 230 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcC-------------------------cchhheeecccCcHHHHHHHHHhccCceEEEe
Confidence 99999999999999999999998 34699999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
...+.....+.|++..+....|...|+++.. .....+||||+++.+..+...|...++.+..+||.|.+.+|..++..
T Consensus 231 kk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~e 308 (397)
T KOG0327|consen 231 KKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMRE 308 (397)
T ss_pred cchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHH
Confidence 9888888889999888888889999999988 55679999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCC
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS 1800 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~ 1800 (1832)
|++|..+|||.|+.++||+|+-++++||||++|.+.++|+||+||+||.|.+|.++.|+++.|...++++.+.+.-. +.
T Consensus 309 f~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~-i~ 387 (397)
T KOG0327|consen 309 FRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP-IE 387 (397)
T ss_pred hhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCc-ce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766433 45
Q ss_pred CCChh
Q psy6409 1801 TCPPE 1805 (1832)
Q Consensus 1801 ~~~~~ 1805 (1832)
.+|..
T Consensus 388 e~p~~ 392 (397)
T KOG0327|consen 388 ELPSN 392 (397)
T ss_pred ecccc
Confidence 55544
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=460.80 Aligned_cols=353 Identities=31% Similarity=0.478 Sum_probs=323.1
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
..|.-...|+++.|...++..|+..+|..||+||..|||.++.+-|+||.|..|+|||++|.+.+++.+. .
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---------~ 89 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---------S 89 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---------c
Confidence 3455667899999999999999999999999999999999999999999999999999999988876542 2
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCC-CCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~-~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
....+.++||+||||||.||.+.+.+++.. .|.+|...+||.........++ .++|+||||||+..++..+.++.+++
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccce
Confidence 346789999999999999999999999875 4899999999999877766665 58899999999999999999999999
Q ss_pred eeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 881 TYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 881 ~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+++||||||.|++ ..|..++.-|+..+| ..+|++.||||.|..+..++..|+++
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP-------------------------~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLP-------------------------QIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcc-------------------------hhheeeEEeccCchhHHHHHHHHhcc
Confidence 9999999999999 569999999999997 34899999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchh--------hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEc
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILSEQ--------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~~~--------~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lh 1031 (1832)
|..+...........+.|+++.+... .|+..|-+++...+-.+.||||+....|+-++.+|...|+.|.++.
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~IS 303 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFIS 303 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEec
Confidence 99999888777777888888765432 4677788888888888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|.|+|.+|..+++.++.-.++|||+||+.+||||-|+|++|||.|+|.+.++|.||||||||+|..|.+++|+.....
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998754
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=448.17 Aligned_cols=374 Identities=27% Similarity=0.426 Sum_probs=309.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
.+..++..+++...+|+|.+++|+++ .++|+++.||||||||+||.|||++.+...| ....++
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~--------v~~LRa 218 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP--------VKRLRA 218 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC--------ccceEE
Confidence 34456888999999999999999996 3589999999999999999999999886643 245789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcC-----CcEEEeCHHHHHHHHHc-cccccCCcee
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-----CEIVIATPGRLIDVLEN-RYLVLNQCTY 1557 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~-----~~IiVaTP~rl~~~l~~-~~~~l~~v~l 1557 (1832)
|||+||++|+.|+++.|.+++...|+.|+.+.|..+...+...|... .||+|+|||||.+++.+ ..+.|+++.|
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceE
Confidence 99999999999999999999999999999999999988877777653 48999999999999985 5689999999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCC-------CC--chhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKP-------DT--EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~-------~~--~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
+||||||+|++..|...+-.++..+....... .. ........++..+.....+.+.+.+|||+......+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 99999999999999988888877765331100 00 0011112222222223445678999999998888888
Q ss_pred HHhcCCCcEEEEcc----cCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHH----HcCC
Q psy6409 1629 RSYLRRPATVYIGS----VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE----KLGY 1700 (1832)
Q Consensus 1629 ~~~l~~p~~v~i~~----~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~----~~~~ 1700 (1832)
..-+..|..+.+.. ....+..+.+....+....+...+..++....-.++|+|++|..++..++..|. ...+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 88888886655442 223344455666666667788888999988888899999999999999998886 3467
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1701 ~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
.+..+.|+++...|...++.|..|+++||||||+++||||+.+|+.|||||+|.+..+|+||+||+||+|+.|.|+++++
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHh
Q psy6409 1781 KDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1781 ~~d~~~~~~l~~~l 1794 (1832)
..+...|.++....
T Consensus 539 ~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKT 552 (620)
T ss_pred cccchHHHHHHHHh
Confidence 99988887776544
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=440.08 Aligned_cols=362 Identities=36% Similarity=0.568 Sum_probs=338.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
.-.|..++|+..++++|.+-||..|||||+..+|.+++++|++..|-||||||.||++||++.+.... ..|.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--------~~g~ 91 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--------QTGL 91 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------cccc
Confidence 35799999999999999999999999999999999999999999999999999999999999876532 3578
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+++++.||++||.|..+..+.++...+.++++++||.+..++...+..++|||+|||+++..+.-.-.+.++.+.|||||
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999988877767889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|+++||.+++..+++.+| ..+|+++||||+|..+-.+++..+.+|..+.+.
T Consensus 172 Eadrlfemgfqeql~e~l~rl~-------------------------~~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLP-------------------------ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCC-------------------------CcceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 9999999999999999999997 346999999999999999999999999999887
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
........++..++.+...+|..+|+.++... ...+++|||.++.+++.+...|...|+.+..+.|.|.+..|..-+..
T Consensus 227 vetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 227 VETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred hhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 77777888888889999999999999999765 45689999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
|..++..+||.||+++||+|||-.+.|||||+|.+..-|+||+||+.|+|..|.++.|+.+.+..++-+|.-.+-.
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888766544
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-48 Score=452.93 Aligned_cols=353 Identities=31% Similarity=0.479 Sum_probs=322.9
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccc
Q psy6409 1397 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476 (1832)
Q Consensus 1397 ~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~ 1476 (1832)
..|.-...|+++.|...++..|+..+|..||++|..|||.++.+-|+||.|..|+|||++|.+.++..+. .
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---------~ 89 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---------S 89 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---------c
Confidence 4455667899999999999999999999999999999999999999999999999999999888876542 2
Q ss_pred cCCCcEEEEEcCcHHHHHHHHHHHHHhcCC-CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCc
Q psy6409 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555 (1832)
Q Consensus 1477 ~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~-~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v 1555 (1832)
....+.++|++||||||.|+.+.+.+++.. .|++|...+||.........+. .++|+|+|||++..++..+.++++++
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccce
Confidence 345788999999999999999999999864 5899999999998877666655 58899999999999999999999999
Q ss_pred eeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC
Q psy6409 1556 TYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634 (1832)
Q Consensus 1556 ~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~ 1634 (1832)
+++|+||||.|++ ..|..++..|+..|| ..+|++.||||.|..+.+.+..|+.+
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP-------------------------~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLP-------------------------QIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcc-------------------------hhheeeEEeccCchhHHHHHHHHhcc
Confidence 9999999999999 669999999999998 45799999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcch--------hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEc
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILSE--------QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~~--------~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lH 1706 (1832)
|..+.....+...-.|.|+++.... ..|...|..+++..+-..+||||+....|+.++.+|..-|+.|.++.
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~IS 303 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFIS 303 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEec
Confidence 9999988877777788888766543 24778888899988889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1707 g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|.|+|.+|..+++.++.-.++|||+||+.+||||-|+|++|||.|.|.+.++|.||||||||+|..|.+++|+.+...
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988743
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=493.83 Aligned_cols=350 Identities=20% Similarity=0.268 Sum_probs=280.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
.|++.+.++|.+.||..|+|+|.+||+.++.|+|++++||||||||+||++|++..+... .++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----------CCcEEEEEcC
Confidence 489999999999999999999999999999999999999999999999999999887542 3678999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccch
Q psy6409 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1489 treLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH 1564 (1832)
|+|||.|+...++.++ ..++++..+.|+.+.. +...+..+++|||+||++|...+.. +...++++++|||||||
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 9999999999999997 4578888888887754 4455667899999999998754322 22358899999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~ 1644 (1832)
.|.+ .|+..+..++..+.. ........+|++++|||+++..+ ++..++..|..+ +....
T Consensus 168 ~~~g-~fg~~~~~il~rL~r------------------i~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~ 226 (742)
T TIGR03817 168 SYRG-VFGSHVALVLRRLRR------------------LCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG 226 (742)
T ss_pred hccC-ccHHHHHHHHHHHHH------------------HHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC
Confidence 9976 488888887776531 01112345799999999998865 566677766443 33333
Q ss_pred CCCcceEEEEEEcc-----------------hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--------C
Q psy6409 1645 KPTERIEQIVYILS-----------------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--------G 1699 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~-----------------~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--------~ 1699 (1832)
.+...... ..+.. ...+...+..++.. ..++||||+|++.|+.++..|... +
T Consensus 227 ~~~~~~~~-~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~ 303 (742)
T TIGR03817 227 SPRGARTV-ALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLA 303 (742)
T ss_pred CCcCceEE-EEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 33222222 11111 12344455555553 578999999999999999988764 5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEe
Q psy6409 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779 (1832)
Q Consensus 1700 ~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~ 1779 (1832)
..+..|||++++++|..+++.|++|++++||||+++++|||||++++||||++|.++.+|+||+|||||.|+.|.+++++
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC--ChhHHHHHHHHh
Q psy6409 1780 TKD--DSHLFYDLKQMM 1794 (1832)
Q Consensus 1780 ~~~--d~~~~~~l~~~l 1794 (1832)
.++ |..++..+...+
T Consensus 384 ~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALF 400 (742)
T ss_pred CCChHHHHHHhCHHHHh
Confidence 754 444455444433
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=478.24 Aligned_cols=340 Identities=23% Similarity=0.323 Sum_probs=265.5
Q ss_pred CcccCCCC--HHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 729 NWKEASLP--TEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 729 ~f~~~~L~--~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
.|...++| ..+...++. +||..++|+|.++|+.++.|+|+|+++|||+|||+||+||++.. +
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------------~ 500 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------------P 500 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------C
Confidence 46654444 445555554 79999999999999999999999999999999999999999841 3
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh------cCCceeecCHHHHH--HHHHcccc--
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR------LGCEIVIATPGRLI--DVLENRYL-- 875 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~------~~~~IlV~TP~rL~--d~l~~~~~-- 875 (1832)
+.+|||+|+++|+.++...+.. .|+.+..+.|+....++...+. ..++|||+||++|. +.+.+...
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5799999999999866655554 4899999999998777655443 35899999999986 22322211
Q ss_pred -ccCCceeEEEecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH
Q psy6409 876 -VLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952 (1832)
Q Consensus 876 -~l~~~~~lViDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~ 952 (1832)
....+.+|||||||++++|| |++.+..|-... ......++++||||++..+...
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr-----------------------~~fp~vPilALTATAT~~V~eD 633 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK-----------------------QKFPNIPVLALTATATASVKED 633 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHH-----------------------HhCCCCCeEEEEecCCHHHHHH
Confidence 23458999999999999998 889887652111 0112367899999999988875
Q ss_pred HHHhcCCC-cEEEEcccCCCCcceEEEEEEcchh-hHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEE
Q psy6409 953 ARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029 (1832)
Q Consensus 953 ~~~~l~~p-~~v~~~~~~~~~~~i~q~~~~~~~~-~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~ 1029 (1832)
+...+... ..+.......++ +... .+... .....+..++... .....||||++++.|+.++..|...|+.+..
T Consensus 634 I~~~L~l~~~~vfr~Sf~RpN--L~y~--Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~ 709 (1195)
T PLN03137 634 VVQALGLVNCVVFRQSFNRPN--LWYS--VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAF 709 (1195)
T ss_pred HHHHcCCCCcEEeecccCccc--eEEE--EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeee
Confidence 55554432 223333333332 2222 22222 2234566666543 4568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1030 lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+||+|++.+|..+++.|..|+++|||||++++||||+|+|++||||++|.+++.|+||+|||||+|..|.|++|++..|.
T Consensus 710 YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 710 YHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred eeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred hHHHH
Q psy6409 1110 HLFYD 1114 (1832)
Q Consensus 1110 ~~~~~ 1114 (1832)
..+..
T Consensus 790 ~~~~~ 794 (1195)
T PLN03137 790 IRVKH 794 (1195)
T ss_pred HHHHH
Confidence 44433
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=465.10 Aligned_cols=342 Identities=23% Similarity=0.309 Sum_probs=266.0
Q ss_pred CcccCCC--CHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1404 NWKEASL--PTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1404 ~~~e~~L--~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
.|...++ ...+...++. +||..|+|+|.++|+.++.|+|+|+++|||+|||+||++|++. .+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---------------~~ 500 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---------------CP 500 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---------------cC
Confidence 4664443 4455555554 8999999999999999999999999999999999999999984 14
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh------cCCcEEEeCHHHHHH--HHHccc---
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR------LGCEIVIATPGRLID--VLENRY--- 1549 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~------~~~~IiVaTP~rl~~--~l~~~~--- 1549 (1832)
..+|||+|+++|+.++...+.. .|+.+..+.|+....++...+. ..++|||+||++|.. .+.+..
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5799999999999876666655 3788999999988776654333 357999999999862 222221
Q ss_pred cccCCceeEEEccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHH
Q psy6409 1550 LVLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627 (1832)
Q Consensus 1550 ~~l~~v~llViDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~ 1627 (1832)
.....+.+|||||||++++|| |++.+..+-.... .....++++||||++..+...
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~-----------------------~fp~vPilALTATAT~~V~eD 633 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ-----------------------KFPNIPVLALTATATASVKED 633 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHH-----------------------hCCCCCeEEEEecCCHHHHHH
Confidence 123458999999999999998 8888876522110 012357899999999988765
Q ss_pred HHHhcCCC-cEEEEcccCCCCcceEEEEEEcchhh-HHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEE
Q psy6409 1628 ARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQD-KRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704 (1832)
Q Consensus 1628 ~~~~l~~p-~~v~i~~~~~~~~~i~q~~~~~~~~~-k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~ 1704 (1832)
+...+... ..+......+++ +. +..+.... ....+..++... ...+.||||+|++.|+.++..|...|+.+..
T Consensus 634 I~~~L~l~~~~vfr~Sf~RpN--L~--y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~ 709 (1195)
T PLN03137 634 VVQALGLVNCVVFRQSFNRPN--LW--YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAF 709 (1195)
T ss_pred HHHHcCCCCcEEeecccCccc--eE--EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeee
Confidence 55554422 223333333332 22 22222222 234566666543 4668999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1705 lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||+|++.+|..+++.|..|+++|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|+...|.
T Consensus 710 YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 710 YHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred eeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hHHHHHH
Q psy6409 1785 HLFYDLK 1791 (1832)
Q Consensus 1785 ~~~~~l~ 1791 (1832)
..+..+.
T Consensus 790 ~~~~~lI 796 (1195)
T PLN03137 790 IRVKHMI 796 (1195)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=491.44 Aligned_cols=462 Identities=22% Similarity=0.251 Sum_probs=332.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.|++++||+.+++++.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|++..+. .+.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------------~~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------------RGGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------------cCCc
Confidence 478899999999999999999999999999998 678999999999999999999999998762 3668
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+|||+||++||.|++..++++. .+|+++..++|+...... ....++|+|+||++|..++.++...++++++||+||
T Consensus 70 al~i~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999999999999999875 458999999998765443 223689999999999877776656688999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC--------
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-------- 959 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~-------- 959 (1832)
||++.+.++++.++.++.++.. .....|++++|||+++. ..++. |+..
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~----------------------~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~r 201 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRR----------------------LNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWR 201 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHh----------------------cCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCC
Confidence 9999999999999999887631 11347999999999863 34443 3321
Q ss_pred CcEEEEcccCCCCcc--eEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-------------
Q psy6409 960 PATVYIGSVGKPTER--IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------- 1023 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~--i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------- 1023 (1832)
|..+..+........ -.+..... ........+.+.+. .++++||||++++.|+.++..|...
T Consensus 202 pv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 279 (737)
T PRK02362 202 PIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAEL 279 (737)
T ss_pred CCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 111111000000000 00000000 11223333444443 5678999999999999998887542
Q ss_pred -----------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC
Q psy6409 1024 -----------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD 1076 (1832)
Q Consensus 1024 -----------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d 1076 (1832)
..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||+ ||
T Consensus 280 ~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd 359 (737)
T PRK02362 280 AELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYD 359 (737)
T ss_pred HHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeec
Confidence 147899999999999999999999999999999999999999999999997 76
Q ss_pred -----CCCCHhHHHHHhcccccCCCC--cEEEEEecCCC------------------chH--HHHHHHHHhcCCcccccc
Q psy6409 1077 -----MAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD------------------SHL--FYDLKQMMISSPVTGRAG 1129 (1832)
Q Consensus 1077 -----~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d------------------~~~--~~~l~~~l~~~~~~~~~~ 1129 (1832)
.|.+..+|+||+|||||+|.+ |.|++++...+ +.+ -..+.+++++++.++++.
T Consensus 360 ~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~ 439 (737)
T PRK02362 360 GGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFAR 439 (737)
T ss_pred CCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccC
Confidence 588999999999999999976 99999997642 111 124677888999999999
Q ss_pred cccccccccccCCchhHH----HHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccc
Q psy6409 1130 KEGLAVSFCTKDDSHLFY----DLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYD 1205 (1832)
Q Consensus 1130 ~~~~~v~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1205 (1832)
+..++++|+..+...... .+.+.+.. .+.. +...+.+... ......
T Consensus 440 ~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~--------~l~~----L~~~~~i~~~------------------~~~~~~ 489 (737)
T PRK02362 440 TRDGLLEFLEATFYATQTDDTGRLERVVDD--------VLDF----LERNGMIEED------------------GETLEA 489 (737)
T ss_pred CHHHHHHHHHhChHHhhccchHHHHHHHHH--------HHHH----HHHCCCeeec------------------CCeEeE
Confidence 999999998654422111 01111100 0000 0001111000 011234
Q ss_pred cccCcccccccccCccc--ccccCCCc-cccchhHhhhhccCchhhhhhcccch-HHHHHH
Q psy6409 1206 RRFKRKKSPQCEAQSSR--FSACSLPR-SHKSSSLLSRYSEQDPEEKELNKDKE-REGEAI 1262 (1832)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l 1262 (1832)
..+|+..+.+|..+.+. +..+.... ..+...+|...+.+.+|+.+.+|..| +.+..+
T Consensus 490 t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~ 550 (737)
T PRK02362 490 TELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEY 550 (737)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHH
Confidence 56788888888877662 22222111 12456788888889999998877555 444443
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=457.24 Aligned_cols=326 Identities=25% Similarity=0.333 Sum_probs=258.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+||..|+|+|.++|+.++.|+|++++||||||||++|++|++. .+..+|||+||++|+.|+...
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------------~~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------------SDGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------------cCCcEEEEecHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999973 145699999999999999888
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHH---HHh-cCCceeecCHHHHHHHH-Hcccc-ccCCceeEEEecchhhhcCC--C
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGF---RLR-LGCEIVIATPGRLIDVL-ENRYL-VLNQCTYIVLDEADRMIDMG--F 896 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l~-~~~~IlV~TP~rL~d~l-~~~~~-~l~~~~~lViDEaH~l~d~g--f 896 (1832)
+..+ |+.+..+.|+....++.. .+. ...+|+|+||+++.... ....+ ....+++|||||||++++|| |
T Consensus 71 l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~f 146 (470)
T TIGR00614 71 LKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDF 146 (470)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccccc
Confidence 8764 778888888877554332 222 34899999999985322 11122 56789999999999999987 7
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc--CCCcEEEEcccCCCCcc
Q psy6409 897 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVYIGSVGKPTER 974 (1832)
Q Consensus 897 ~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l--~~p~~v~~~~~~~~~~~ 974 (1832)
++.+..|..... ..+..+++++|||+++.+.......+ .+|..+ ......++
T Consensus 147 r~~~~~l~~l~~-----------------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~r~n-- 200 (470)
T TIGR00614 147 RPDYKALGSLKQ-----------------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFDRPN-- 200 (470)
T ss_pred HHHHHHHHHHHH-----------------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCCCCC--
Confidence 787766532110 11246799999999998765554443 344433 23222222
Q ss_pred eEEEEEEcchhhHHHHHHHHHH-cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~-~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
+...+.. ........+..++. ...+..+||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 201 l~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~v 279 (470)
T TIGR00614 201 LYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQV 279 (470)
T ss_pred cEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcE
Confidence 2222211 11234556667665 345556799999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
||||+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|+++.|...+..+.
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=485.38 Aligned_cols=374 Identities=25% Similarity=0.335 Sum_probs=291.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.|++++||+.+++++...||..|+|+|.+|++. +++|+|++++||||||||++|++|++..+. .+.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------------~~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------------RGGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------------cCCc
Confidence 477889999999999999999999999999998 678999999999999999999999998763 2568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+|||+|+++||.|++..|++++ .+|+++..++|+....... ...++|+|+||++|..+++++...++++++||+||
T Consensus 70 al~i~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~~---l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDEW---LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCccccc---cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999999999999999875 4589999999998765432 23689999999999999987766789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
||++.+.++++.++.++..+... ....|++++|||+++.. .+.. |+.... +..
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~----------------------~~~~qii~lSATl~n~~-~la~-wl~~~~---~~~ 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRL----------------------NPDLQVVALSATIGNAD-ELAD-WLDAEL---VDS 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhc----------------------CCCCcEEEEcccCCCHH-HHHH-HhCCCc---ccC
Confidence 99999889999999988776421 13479999999998753 3332 332111 000
Q ss_pred cCCCCcceEEEE-----------EEcc---hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc----------
Q psy6409 1643 VGKPTERIEQIV-----------YILS---EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------- 1698 (1832)
Q Consensus 1643 ~~~~~~~i~q~~-----------~~~~---~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~---------- 1698 (1832)
..++.......+ .... .......+.+.+. ..+++||||+|++.|+.++..|...
T Consensus 199 ~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~ 276 (737)
T PRK02362 199 EWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAER 276 (737)
T ss_pred CCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 011111000000 0011 1122233333333 5679999999999999998887542
Q ss_pred --------------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE---
Q psy6409 1699 --------------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN--- 1749 (1832)
Q Consensus 1699 --------------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~--- 1749 (1832)
..++++|||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+
T Consensus 277 ~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~ 356 (737)
T PRK02362 277 AELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYR 356 (737)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecce
Confidence 247999999999999999999999999999999999999999999999997
Q ss_pred -eC-----CCCCHHHHHHHhcccccCCCc--cEEEEEeeCCC-h-hHHHHHH-HHhhcCCCCCC--ChhhcCCCCCcCCC
Q psy6409 1750 -YD-----MAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD-S-HLFYDLK-QMMISSPVSTC--PPELLNHPDAQHKP 1816 (1832)
Q Consensus 1750 -~d-----~P~s~~~yiQRiGRaGR~g~~--G~ai~~~~~~d-~-~~~~~l~-~~l~~~~~~~~--~~~L~~h~~a~~~~ 1816 (1832)
|| .|.++.+|+||+|||||+|.. |.|++++...+ . .+|..+. ..+.+.+ |.+ +..|.+|.+|+|+.
T Consensus 357 ~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~-S~l~~~~~l~~~lla~I~~ 435 (737)
T PRK02362 357 RYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVR-SKLATEPALRTHVLSTIAS 435 (737)
T ss_pred eecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCcee-ecCCChhhHHHHHHHHHHh
Confidence 76 688999999999999998865 99999997753 2 2333333 2333443 555 45699999999999
Q ss_pred Ccccccc
Q psy6409 1817 GTVMVPK 1823 (1832)
Q Consensus 1817 gti~~~~ 1823 (1832)
|++.+++
T Consensus 436 ~~~~~~~ 442 (737)
T PRK02362 436 GFARTRD 442 (737)
T ss_pred CccCCHH
Confidence 9998654
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=445.80 Aligned_cols=325 Identities=25% Similarity=0.331 Sum_probs=257.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+||..|+|+|.++|+.++.|+|++++||||||||+||++|++. .+..+|||+||++|+.|+...
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------------~~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------------SDGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------------cCCcEEEEecHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999973 245699999999999999988
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHH---Hh-hcCCcEEEeCHHHHHHHH-Hcccc-ccCCceeEEEccchhhhcCC--C
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGF---RL-RLGCEIVIATPGRLIDVL-ENRYL-VLNQCTYIVLDEADRMIDMG--F 1571 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~---~l-~~~~~IiVaTP~rl~~~l-~~~~~-~l~~v~llViDEaH~ll~~g--f 1571 (1832)
+..+ |+.+..+.|+....+... .+ ...++|+++||+++.... ....+ ...++++|||||||++++|| |
T Consensus 71 l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~f 146 (470)
T TIGR00614 71 LKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDF 146 (470)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccccc
Confidence 8764 677888888877653322 12 234799999999975432 11112 56889999999999999987 7
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc--CCCcEEEEcccCCCCcc
Q psy6409 1572 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVYIGSVGKPTER 1649 (1832)
Q Consensus 1572 ~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l--~~p~~v~i~~~~~~~~~ 1649 (1832)
++.+..+..... ..+..+++++|||+++.+.......+ ..|..+ ..+...++
T Consensus 147 r~~~~~l~~l~~-----------------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~r~n-- 200 (470)
T TIGR00614 147 RPDYKALGSLKQ-----------------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFDRPN-- 200 (470)
T ss_pred HHHHHHHHHHHH-----------------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCCCCC--
Confidence 777766532211 01235799999999998765554443 344433 23333322
Q ss_pred eEEEEEEcchhhHHHHHHHHHH-hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~-~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
+...+... .......+..++. ......+||||+|++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|
T Consensus 201 l~~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~v 279 (470)
T TIGR00614 201 LYYEVRRK-TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQV 279 (470)
T ss_pred cEEEEEeC-CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222111 1134455666665 345567799999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
||||+++++|||+|+|++||||++|.|+++|+||+|||||.|..|.|++|+++.|...+..+
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887655544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=473.54 Aligned_cols=452 Identities=19% Similarity=0.241 Sum_probs=327.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.|+++++++.+.+.+++.||.+|+|+|.+||+. ++.|+|++++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----------~~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----------EGGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----------cCCe
Confidence 578899999999999999999999999999996 7789999999999999999999999987632 3568
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+|||+|+++||.|+++.+..+. .+|+++..++|+....... ...++|+|+||++|..++.++...++++++||+||
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcC
Confidence 9999999999999999998864 5789999999998754332 24689999999999887776666789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
+|.+.+.++++.++.++.+++ ...|++++|||+++ ...++. |+..+... .
T Consensus 147 ~H~l~~~~rg~~le~il~~l~-------------------------~~~qiI~lSATl~n-~~~la~-wl~~~~~~---~ 196 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHML-------------------------GRAQILGLSATVGN-AEELAE-WLNAELVV---S 196 (720)
T ss_pred cCccCCccchHHHHHHHHhcC-------------------------cCCcEEEEEccCCC-HHHHHH-HhCCcccc---C
Confidence 999999999999999988764 23689999999987 455665 44433211 1
Q ss_pred cCCCCcc----eEEEEEEcch-------hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH--------------
Q psy6409 968 VGKPTER----IEQIVYILSE-------QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-------------- 1022 (1832)
Q Consensus 968 ~~~~~~~----i~q~~~~~~~-------~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~-------------- 1022 (1832)
...+... +.+.+..... ......+.+.+. .+.++||||++++.|+.++..|..
T Consensus 197 ~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 274 (720)
T PRK00254 197 DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRAL 274 (720)
T ss_pred CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 1111111 1111111111 111223334444 457899999999999888766632
Q ss_pred -------------------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE-------cC
Q psy6409 1023 -------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN-------YD 1076 (1832)
Q Consensus 1023 -------------------~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~-------~d 1076 (1832)
...++.+|||+|++++|..+++.|++|.++|||||+++++|||+|++.+||. |+
T Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~ 354 (720)
T PRK00254 275 KELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFG 354 (720)
T ss_pred HHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCC
Confidence 1346999999999999999999999999999999999999999999999993 56
Q ss_pred CCC-CHhHHHHHhcccccCC--CCcEEEEEecCCCc-hHH------------------HHHHHHHhcCCccccccccccc
Q psy6409 1077 MAK-SIEDYTHRIGRTGRAG--KEGLAVSFCTKDDS-HLF------------------YDLKQMMISSPVTGRAGKEGLA 1134 (1832)
Q Consensus 1077 ~p~-s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~-~~~------------------~~l~~~l~~~~~~~~~~~~~~~ 1134 (1832)
+|. ++.+|+||+|||||.| ..|.|+++++.++. .++ ..+.+++++++..+.+.+..++
T Consensus 355 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~ 434 (720)
T PRK00254 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKEL 434 (720)
T ss_pred ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHH
Confidence 654 6789999999999976 45999999987542 111 2345677888888999999999
Q ss_pred ccccccCCchh----HHHHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCc
Q psy6409 1135 VSFCTKDDSHL----FYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKR 1210 (1832)
Q Consensus 1135 v~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1210 (1832)
++|++.+.... ++.+...+... + ..|.. .+.+.... .+....+.+|+
T Consensus 435 ~~~l~~Tf~~~~~~~~~~~~~~v~~~----l-~~L~~-------~~~i~~~~-----------------~~~~~~t~lG~ 485 (720)
T PRK00254 435 VNFLERTFYAHQRKDLYSLEEKAKEI----V-YFLLE-------NEFIDIDL-----------------EDRFIPLPLGI 485 (720)
T ss_pred HHHHHhCHHHHhhcChHhHHHHHHHH----H-HHHHH-------CCCeEEcC-----------------CCCEeeChHHH
Confidence 99987554321 11111111100 0 00100 00000000 01123455788
Q ss_pred ccccccccCccc--ccccCCC--ccccchhHhhhhccCchhhhhhcccch
Q psy6409 1211 KKSPQCEAQSSR--FSACSLP--RSHKSSSLLSRYSEQDPEEKELNKDKE 1256 (1832)
Q Consensus 1211 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 (1832)
..+.+|..+.+. +..+... ...+...+|+..+.+.+|+.+..|..|
T Consensus 486 ~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e 535 (720)
T PRK00254 486 RTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKE 535 (720)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhh
Confidence 888888877662 2112111 134567799999999999999887655
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=453.98 Aligned_cols=334 Identities=23% Similarity=0.331 Sum_probs=264.8
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 735 LPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 735 L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
++....+.|++ +||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.. +..+|||+|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVisP 73 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVSP 73 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEec
Confidence 33444555654 79999999999999999999999999999999999999999842 346999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHH---Hh-cCCceeecCHHHHHHHHHccccccCCceeEEEecch
Q psy6409 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---LR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 814 treLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~---l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH 889 (1832)
+++|+.|+...+..+ |+.+.++.++....+.... +. ...+|+|+||++|........+...++++|||||||
T Consensus 74 l~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH 149 (607)
T PRK11057 74 LISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcc
Confidence 999999999988875 6778888888776554322 22 247899999999873222223445678999999999
Q ss_pred hhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh--cCCCcEEEE
Q psy6409 890 RMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY--LRRPATVYI 965 (1832)
Q Consensus 890 ~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~--l~~p~~v~~ 965 (1832)
++++|| |++.+..|.... ...+..+++++|||+++.+....... +.+|. +.+
T Consensus 150 ~i~~~G~~fr~~y~~L~~l~-----------------------~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~~ 205 (607)
T PRK11057 150 CISQWGHDFRPEYAALGQLR-----------------------QRFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205 (607)
T ss_pred ccccccCcccHHHHHHHHHH-----------------------HhCCCCcEEEEecCCChhHHHHHHHHhCCCCeE-EEE
Confidence 999987 788776653211 01124679999999998876544333 33443 333
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.....++ +. +..+....+...+..++....+.++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.
T Consensus 206 ~~~~r~n--l~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~ 281 (607)
T PRK11057 206 SSFDRPN--IR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEA 281 (607)
T ss_pred CCCCCCc--ce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 3333322 21 1222333455667777777777899999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
|+.|.++|||||+++++|||+|+|++|||||+|.|.++|+||+|||||.|..|.|++|+++.|...+..+
T Consensus 282 F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred HHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999886554443
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=464.05 Aligned_cols=372 Identities=21% Similarity=0.258 Sum_probs=286.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.|.++++++.+.+.+++.||..|+|+|.++++. +++|+|++++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----------~~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----------EGGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----------cCCe
Confidence 467889999999999999999999999999996 7899999999999999999999999987643 3568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+|||+|+++|+.|++..|..+. .+|+++..++|+....... ...++|+|+||++|..++......++++++||+||
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcC
Confidence 9999999999999999999864 4689999999998765432 24689999999999999887666789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
+|.+.+.++++.++.++..++ ...|++++|||+++. ..+.. |+..+.. ..
T Consensus 147 ~H~l~~~~rg~~le~il~~l~-------------------------~~~qiI~lSATl~n~-~~la~-wl~~~~~---~~ 196 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHML-------------------------GRAQILGLSATVGNA-EELAE-WLNAELV---VS 196 (720)
T ss_pred cCccCCccchHHHHHHHHhcC-------------------------cCCcEEEEEccCCCH-HHHHH-HhCCccc---cC
Confidence 999999899999999988774 236899999999874 44444 4443221 11
Q ss_pred cCCCCcc----eEEEEEEcch-------hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH--------------
Q psy6409 1643 VGKPTER----IEQIVYILSE-------QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-------------- 1697 (1832)
Q Consensus 1643 ~~~~~~~----i~q~~~~~~~-------~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~-------------- 1697 (1832)
..++... +.+.+..... ......+.+.+. ..+++||||+|++.|+.++..|..
T Consensus 197 ~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 274 (720)
T PRK00254 197 DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRAL 274 (720)
T ss_pred CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 1122111 1111111111 111223334444 357899999999999988766632
Q ss_pred -------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE-------eC
Q psy6409 1698 -------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN-------YD 1751 (1832)
Q Consensus 1698 -------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~-------~d 1751 (1832)
...++++|||+|++++|..+++.|++|.++|||||+++++|||+|++.+||. ++
T Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~ 354 (720)
T PRK00254 275 KELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFG 354 (720)
T ss_pred HHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCC
Confidence 2347999999999999999999999999999999999999999999999994 55
Q ss_pred CCC-CHHHHHHHhcccccCC--CccEEEEEeeCCCh-hHHHHHHH-HhhcCCCCC--CChhhcCCCCCcCCCCcccccc
Q psy6409 1752 MAK-SIEDYTHRIGRTGRAG--KEGLAVSFCTKDDS-HLFYDLKQ-MMISSPVST--CPPELLNHPDAQHKPGTVMVPK 1823 (1832)
Q Consensus 1752 ~P~-s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~-~~~~~l~~-~l~~~~~~~--~~~~L~~h~~a~~~~gti~~~~ 1823 (1832)
+|. ++.+|+||+|||||.| ..|.+++|+...+. .++..+.. .+.+.. +. .++.|.+|.+++++.|++.+++
T Consensus 355 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~-s~l~~es~l~~~ll~~i~~~~~~~~~ 432 (720)
T PRK00254 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLF-SMLSNESAFRSQVLALITNFGVSNFK 432 (720)
T ss_pred ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhh-ccCCchHHHHHHHHHHHHhCCCCCHH
Confidence 544 5789999999999975 67999999987653 33333221 111111 22 3456889999999999987553
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=446.22 Aligned_cols=335 Identities=23% Similarity=0.328 Sum_probs=265.2
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1409 SLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1409 ~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
+++....+.|++ +||..|+|+|.++|+.++.|+|+++++|||||||+||++|++.. +..+|||+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVis 72 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVS 72 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEe
Confidence 344555566655 79999999999999999999999999999999999999999831 34699999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH---hh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---LR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~---l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|+++|+.|+...++.+ |+.+.++.++.+....... +. ...+|+++||+++........+...++++||||||
T Consensus 73 Pl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 73 PLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEA 148 (607)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCc
Confidence 9999999999998875 6777778887766543221 22 24789999999987422222344567999999999
Q ss_pred hhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc--CCCcEEE
Q psy6409 1564 DRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVY 1639 (1832)
Q Consensus 1564 H~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l--~~p~~v~ 1639 (1832)
|++.+|| |++.+..+..... ..+..+++++|||++..+.......+ .+|. +.
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~-----------------------~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~ 204 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQ-----------------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQ 204 (607)
T ss_pred cccccccCcccHHHHHHHHHHH-----------------------hCCCCcEEEEecCCChhHHHHHHHHhCCCCeE-EE
Confidence 9999987 7777765532211 11246799999999988765443333 3443 33
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.....++ + .+.......+...+..++......++||||+|+++|+.++..|...|+.+..+||+|++.+|..+++
T Consensus 205 ~~~~~r~n--l--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 205 ISSFDRPN--I--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred ECCCCCCc--c--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 33333332 2 1222233344566777777777789999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
.|+.|+++|||||+++++|||+|+|++|||||+|.|+++|+||+|||||.|..|.|++|+++.|...+..+
T Consensus 281 ~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 281 AFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred HHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886655443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=447.46 Aligned_cols=328 Identities=25% Similarity=0.386 Sum_probs=267.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.|++ +||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------------~g~~lVisPl~sL~~ 67 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------------KGLTVVISPLISLMK 67 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------------CCcEEEEcCCHHHHH
Confidence 34544 89999999999999999999999999999999999999999731 346899999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH----hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l----~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g 895 (1832)
|+...++.+ |+.+..+.|+.+..+....+ ....+|+++||++|........+....+++|||||||++.+||
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999988875 78888888888766543322 2358999999999975444444566789999999999999987
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC--CCcEEEEcccCCC
Q psy6409 896 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVYIGSVGKP 971 (1832)
Q Consensus 896 --f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~--~p~~v~~~~~~~~ 971 (1832)
|++.+..|..... ..+..+++++|||+++.+.......+. ++.. .+.....+
T Consensus 144 ~~frp~y~~l~~l~~-----------------------~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~ 199 (591)
T TIGR01389 144 HDFRPEYQRLGSLAE-----------------------RFPQVPRIALTATADAETRQDIRELLRLADANE-FITSFDRP 199 (591)
T ss_pred CccHHHHHHHHHHHH-----------------------hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe-EecCCCCC
Confidence 8888877654321 011245999999999988766665554 3332 23322222
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 972 ~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
. + .+.......+...+.+.+....+.++||||++++.|+.+++.|...|+++..+||+|+.++|..+++.|.+|.+
T Consensus 200 n--l--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~ 275 (591)
T TIGR01389 200 N--L--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV 275 (591)
T ss_pred C--c--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 2 2 22223344567778888877677899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
+|||||+++++|||+|+|++||||++|.|+++|+|++|||||.|..|.|++|++..|...+..+
T Consensus 276 ~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 276 KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999886655544
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=443.37 Aligned_cols=326 Identities=25% Similarity=0.392 Sum_probs=265.9
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1416 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1416 ~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
+.|++ +||.+|+|+|.++|+.++.|+|++++||||+|||+||++|++. .+..+|||+|+++|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------------~~g~~lVisPl~sL~~ 67 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------------LKGLTVVISPLISLMK 67 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------------cCCcEEEEcCCHHHHH
Confidence 34544 8999999999999999999999999999999999999999973 1346899999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHH---h-hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---L-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~---l-~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g 1570 (1832)
|+...++.+ |+.+..+.++.+..+.... + ....+|+++||+++........+...++++|||||||++.+||
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999998885 6778888888876654322 2 2458999999999875444444566789999999999999887
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--CCcEEEEcccCCC
Q psy6409 1571 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVYIGSVGKP 1646 (1832)
Q Consensus 1571 --f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~--~p~~v~i~~~~~~ 1646 (1832)
|++.+..+...... ....+++++|||++..+...+..++. .+.. .+.....+
T Consensus 144 ~~frp~y~~l~~l~~~-----------------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~ 199 (591)
T TIGR01389 144 HDFRPEYQRLGSLAER-----------------------FPQVPRIALTATADAETRQDIRELLRLADANE-FITSFDRP 199 (591)
T ss_pred CccHHHHHHHHHHHHh-----------------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe-EecCCCCC
Confidence 88888776543321 01234899999999988766666554 3332 23333332
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1647 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1647 ~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
+ + .+.......+...+.+++......++||||+|++.|+.++..|...|+++..+||+|++++|..+++.|.+|++
T Consensus 200 n--l--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~ 275 (591)
T TIGR01389 200 N--L--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV 275 (591)
T ss_pred C--c--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 2 2 22233344566778888887777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
+|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|++|+++.|...+.
T Consensus 276 ~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 276 KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887754443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=455.92 Aligned_cols=345 Identities=23% Similarity=0.317 Sum_probs=260.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|++.+.+.+++ +|..|||+|.+|||.+++|+|+|++||||||||++|++|++..+...... .....++++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 67777777665 79999999999999999999999999999999999999999887542211 111357889999999
Q ss_pred hhHHHHHHHHHHH-------h----cCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--ccCCc
Q psy6409 815 RELAQQIEEETNK-------F----GTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--VLNQC 880 (1832)
Q Consensus 815 reLa~Qi~~~~~~-------~----~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--~l~~~ 880 (1832)
++||.|++..+.. + +..+ ++++...+|+.+..++...+...++|+|+||++|..++....+ .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999876552 2 2344 7889999999988877777778899999999999877765433 57899
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC-
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR- 959 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~- 959 (1832)
++|||||||.|.+..++..+..++.++... .....|++++|||+++ .+.++......
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l---------------------~~~~~q~IglSATl~~-~~~va~~L~~~~ 231 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEEL---------------------AGGEFVRIGLSATIEP-LEEVAKFLVGYE 231 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHh---------------------cCCCCeEEEEecccCC-HHHHHHHhcCcc
Confidence 999999999999988998888877765310 1235789999999986 34444333221
Q ss_pred ----CcE-EEEcccCCCCcceEEE-----EEEcch----hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--
Q psy6409 960 ----PAT-VYIGSVGKPTERIEQI-----VYILSE----QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-- 1023 (1832)
Q Consensus 960 ----p~~-v~~~~~~~~~~~i~q~-----~~~~~~----~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~-- 1023 (1832)
+.. ..+.........+... ...... ......+.+++. ...++||||||+..|+.++..|...
T Consensus 232 ~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 232 DDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 211 1111111111111100 000111 112233344443 3468999999999999999999873
Q ss_pred ----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC-CCCc
Q psy6409 1024 ----GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKEG 1098 (1832)
Q Consensus 1024 ----g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~-g~~G 1098 (1832)
+..+.+|||+|++++|..+++.|++|.++|||||+++++|||+|+|++||+|+.|.++.+|+||+|||||. |..+
T Consensus 310 ~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~ 389 (876)
T PRK13767 310 EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVS 389 (876)
T ss_pred hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999986 4445
Q ss_pred EEEEEecCC
Q psy6409 1099 LAVSFCTKD 1107 (1832)
Q Consensus 1099 ~ai~~~~~~ 1107 (1832)
.+++++...
T Consensus 390 ~g~ii~~~~ 398 (876)
T PRK13767 390 KGRIIVVDR 398 (876)
T ss_pred cEEEEEcCc
Confidence 555555543
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=447.66 Aligned_cols=345 Identities=23% Similarity=0.313 Sum_probs=258.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
|++.+.+.++. +|..|||+|.+||+.+++|+|++++||||||||+||++|++..+...+.. .....+.++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 67777777665 79999999999999999999999999999999999999999887643211 111357889999999
Q ss_pred HHHHHHHHHHHHH-------h----cCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc--ccCCc
Q psy6409 1490 RELAQQIEEETNK-------F----GTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--VLNQC 1555 (1832)
Q Consensus 1490 reLa~Qi~~~~~~-------~----~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~--~l~~v 1555 (1832)
++|+.|+++.+.. + +..+ ++++...+|+.+.......+...++|+|+||++|..++.+..+ .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999876542 2 2334 7788999999998877667777899999999999888865443 57899
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-- 1633 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~-- 1633 (1832)
++|||||||.|.+..++..+..++.++... .....|++++|||+++. ..+......
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l---------------------~~~~~q~IglSATl~~~-~~va~~L~~~~ 231 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEEL---------------------AGGEFVRIGLSATIEPL-EEVAKFLVGYE 231 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHh---------------------cCCCCeEEEEecccCCH-HHHHHHhcCcc
Confidence 999999999999888888877776665311 02457899999999874 333322211
Q ss_pred ---CCcEEE-EcccCCCCcceEEEE-----EEcchh----hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--
Q psy6409 1634 ---RPATVY-IGSVGKPTERIEQIV-----YILSEQ----DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-- 1698 (1832)
Q Consensus 1634 ---~p~~v~-i~~~~~~~~~i~q~~-----~~~~~~----~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~-- 1698 (1832)
.+..+. +.........+.... ...... .....+..++. ..+++||||||+..|+.++..|...
T Consensus 232 ~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 232 DDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 121111 111110110111000 001111 11233333343 3468999999999999999999873
Q ss_pred ----CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC-CCcc
Q psy6409 1699 ----GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKEG 1773 (1832)
Q Consensus 1699 ----~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~-g~~G 1773 (1832)
+.++..|||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+|+.|.++.+|+||+|||||. |..+
T Consensus 310 ~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~ 389 (876)
T PRK13767 310 EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVS 389 (876)
T ss_pred hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999986 4445
Q ss_pred EEEEEeeCC
Q psy6409 1774 LAVSFCTKD 1782 (1832)
Q Consensus 1774 ~ai~~~~~~ 1782 (1832)
.+++++...
T Consensus 390 ~g~ii~~~~ 398 (876)
T PRK13767 390 KGRIIVVDR 398 (876)
T ss_pred cEEEEEcCc
Confidence 565555543
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=373.24 Aligned_cols=323 Identities=32% Similarity=0.578 Sum_probs=282.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
--+.|.++-|.|+++.+|-..||+.|+.+|.++||.+.-|-|++..|..|.|||.+|+|.-|+.| +.....
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqi---------epv~g~ 110 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI---------EPVDGQ 110 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhc---------CCCCCe
Confidence 34568888899999999999999999999999999999999999999999999999999998765 233446
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lV 884 (1832)
..+|++|.|||||.||.++..+|.+.+ ++++...+||.+.......+++.++|+|+|||+++.++.++.+.|++++..|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceee
Confidence 789999999999999999999998876 5899999999999998889988999999999999999999999999999999
Q ss_pred Eecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 885 LDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 885 iDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
+||||.|++ .+.+.+++.|....| ...|+++||||++..+...++.|+.+|..+
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp-------------------------~~KQvmmfsatlskeiRpvC~kFmQdPmEi 245 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCHKFMQDPMEI 245 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCc-------------------------ccceeeeeeeecchhhHHHHHhhhcCchhh
Confidence 999999886 356778888887776 347999999999999999999999999999
Q ss_pred EEcccCC-CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 964 YIGSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 964 ~~~~~~~-~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~i 1042 (1832)
+++.... ....++|++..+.+..|...+.++|....-.+++||+.+... | +
T Consensus 246 ~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~------- 297 (387)
T KOG0329|consen 246 FVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S------- 297 (387)
T ss_pred hccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h-------
Confidence 9887654 345577788888888888888888887777889999988654 0 0
Q ss_pred HHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHH
Q psy6409 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQ 1117 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~ 1117 (1832)
| ..+ ||||++++||+||..|+.|||||+|.+..+|+||+|||||.|..|.+|+|++.. +...+..+.+
T Consensus 298 ---f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 298 ---F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred ---h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 2 223 899999999999999999999999999999999999999999999999999976 4455555544
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=447.08 Aligned_cols=373 Identities=20% Similarity=0.231 Sum_probs=282.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
.|.+++|++.+++.+...+|. |+|+|.++++.+.+|+|++++||||||||++|.++++..+.. +.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------------~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------------GLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------------CCcE
Confidence 366788999999999999996 999999999999999999999999999999999999877632 5679
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|||+|+++||.|+++.|.++. .+|+++...+|+...... ....++|+|+||+++..++.++...++++++||+|||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred EEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 999999999999999999864 578899999998765433 2246899999999999999888777999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|++.+.++++.++.++..+... ....|++++|||+++. .++.. |+..+.. ...
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~----------------------~~~~riI~lSATl~n~-~~la~-wl~~~~~---~~~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYV----------------------NPDARILALSATVSNA-NELAQ-WLNASLI---KSN 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhc----------------------CcCCcEEEEeCccCCH-HHHHH-HhCCCcc---CCC
Confidence 9999888999999888765421 1347899999999875 44443 4432211 111
Q ss_pred CCCCcceEEEE----EEcchh-hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHc------------------
Q psy6409 1644 GKPTERIEQIV----YILSEQ-DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL------------------ 1698 (1832)
Q Consensus 1644 ~~~~~~i~q~~----~~~~~~-~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~------------------ 1698 (1832)
..+........ ...... .....+..++.. ...+++||||++++.|+.++..|...
T Consensus 198 ~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 277 (674)
T PRK01172 198 FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYD 277 (674)
T ss_pred CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence 11111100000 001000 011112223322 24678999999999999999888653
Q ss_pred -------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC---------CCCHHHHHHH
Q psy6409 1699 -------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM---------AKSIEDYTHR 1762 (1832)
Q Consensus 1699 -------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~---------P~s~~~yiQR 1762 (1832)
..++++|||+|++++|..+++.|++|.++|||||+++++|||+|+.. ||+++. |.++.+|.||
T Consensus 278 ~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm 356 (674)
T PRK01172 278 DSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQM 356 (674)
T ss_pred HHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHH
Confidence 24689999999999999999999999999999999999999999865 444443 5589999999
Q ss_pred hcccccCCC--ccEEEEEeeCCC-hhHHHHHH-HHhhcCCCCCCChhhcCCCC--CcCCCCccccc
Q psy6409 1763 IGRTGRAGK--EGLAVSFCTKDD-SHLFYDLK-QMMISSPVSTCPPELLNHPD--AQHKPGTVMVP 1822 (1832)
Q Consensus 1763 iGRaGR~g~--~G~ai~~~~~~d-~~~~~~l~-~~l~~~~~~~~~~~L~~h~~--a~~~~gti~~~ 1822 (1832)
+|||||.|. .|.+++|+...+ ...+.++. ..+.+.+ |.+...+..+.+ +++..|++.++
T Consensus 357 ~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~-S~l~~~~~~~~~~l~~i~~g~~~~~ 421 (674)
T PRK01172 357 IGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVI-SYMGSQRKVRFNTLAAISMGLASSM 421 (674)
T ss_pred hhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCcee-ecCCCcccHHHHHHHHHHhcccCCH
Confidence 999999884 678888877654 44444443 3344443 566655556655 89999988754
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=426.47 Aligned_cols=318 Identities=20% Similarity=0.218 Sum_probs=251.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE-EccchhHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII-MAPTRELAQQIEE 823 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~gr-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li-laPtreLa~Qi~~ 823 (1832)
.||. |||||.++||.++.|+ +++++||||||||.+|+++++.. ......++.|| ++|||+||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~----------~~~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV----------EIGAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc----------cccccccceEEEeCchHHHHHHHHH
Confidence 5998 9999999999999998 57778999999999776555521 01123455555 7799999999999
Q ss_pred HHHHhcCCC-----------------------CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-----
Q psy6409 824 ETNKFGTPL-----------------------GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----- 875 (1832)
Q Consensus 824 ~~~~~~~~~-----------------------~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~----- 875 (1832)
.+.++++.+ ++++..++||.+...|+..+..+++|||||+ |++.++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccc
Confidence 999988755 4889999999999999999999999999995 66655554
Q ss_pred -----------ccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec
Q psy6409 876 -----------VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 944 (1832)
Q Consensus 876 -----------~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT 944 (1832)
.++++++||||||| ++++|...+..|+..+... .....+|+++||||
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp--------------------~~~rprQtLLFSAT 214 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP--------------------PDFLPLRVVELTAT 214 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC--------------------cccccceEEEEecC
Confidence 27889999999999 7899999999999865200 00123699999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH---HcCCCCCEEEEEcccchHHHHHHHHH
Q psy6409 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 945 l~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l---~~~~~~~vIVFv~s~~~~~~l~~~L~ 1021 (1832)
+|..+..++..++.+|..+.+.........+.+. +.+....+...+...+ .....+++||||||++.|+.+++.|.
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~ 293 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP 293 (844)
T ss_pred CCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH
Confidence 9998888888888888766655444444455554 3334444443333322 12355789999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHH-----HHHHHHhC----CC-------CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHH
Q psy6409 1022 KLGYNACTLHGGKGQEQRE-----LALNSLKG----GS-------KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1022 ~~g~~v~~lhg~~~~~~R~-----~il~~F~~----G~-------~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yv 1085 (1832)
..++ ..+||+|++.+|. .+++.|++ |. ..|||||+++++||||+. ++||++.+| .++|+
T Consensus 294 ~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyI 368 (844)
T TIGR02621 294 KEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQ 368 (844)
T ss_pred hcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHH
Confidence 8876 8999999999999 88999987 54 689999999999999986 889998776 68999
Q ss_pred HHhcccccCCCC-cEEEEEecC
Q psy6409 1086 HRIGRTGRAGKE-GLAVSFCTK 1106 (1832)
Q Consensus 1086 Qr~GRaGR~g~~-G~ai~~~~~ 1106 (1832)
||+||+||.|.. |.++++++.
T Consensus 369 QRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 369 QRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHhcccCCCCCCCCceEEEEee
Confidence 999999999986 445777655
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=365.25 Aligned_cols=334 Identities=31% Similarity=0.551 Sum_probs=287.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..|.++-|.|++++++-..||.+|+.+|.++||...-|-|+++.|..|.|||.+|+++.|+.+. .......
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---------pv~g~vs 112 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---------PVDGQVS 112 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---------CCCCeEE
Confidence 4566777999999999999999999999999999999999999999999999999999886542 2334567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+|++|+|||||.|+.++..+|.+.+ ++++...+||.++......+.+.++|+|+|||+++.+.+++.++++++..+|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 9999999999999999999998776 588999999999988888888889999999999999999999999999999999
Q ss_pred cchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1562 EADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1562 EaH~ll~~-gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
|||.|+++ ..+..++.|....| ...|+++||||+++.+...++.++.+|..+++
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp-------------------------~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v 247 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV 247 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCc-------------------------ccceeeeeeeecchhhHHHHHhhhcCchhhhc
Confidence 99998864 45667777776665 45799999999999999999999999999888
Q ss_pred cccCC-CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1641 GSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1641 ~~~~~-~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
..... ....++|+|..+.+..|...+.++|....-.+++||+.|... | +
T Consensus 248 DdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~--------- 297 (387)
T KOG0329|consen 248 DDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S--------- 297 (387)
T ss_pred cchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h---------
Confidence 76543 445677888888899999999999988878899999998655 0 0
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1799 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1799 (1832)
| ..+ ||||++++||+||..++.|||||+|.+..+|+||+|||||.|..|.|++|+...+....-.-.+.-+..++
T Consensus 298 -f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i 372 (387)
T KOG0329|consen 298 -F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNI 372 (387)
T ss_pred -h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccH
Confidence 2 122 89999999999999999999999999999999999999999999999999998754444344445555666
Q ss_pred CCCChh
Q psy6409 1800 STCPPE 1805 (1832)
Q Consensus 1800 ~~~~~~ 1805 (1832)
+.+|.+
T Consensus 373 ~eLpde 378 (387)
T KOG0329|consen 373 KELPDE 378 (387)
T ss_pred hhcCcc
Confidence 777766
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=440.59 Aligned_cols=367 Identities=20% Similarity=0.270 Sum_probs=277.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
.|++++||+.+++.+...||. |+|+|.++++.+.+|+|++++||||||||++|.++++..+. .+.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------------~~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------------AGLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------------hCCcE
Confidence 477899999999999999997 99999999999999999999999999999999999987653 25689
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||++|+++||.|+++.+.++. .+|+++...+|+...... ....++|+|+||+++..++.+....++++++||+|||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred EEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 999999999999999999864 578999999998764332 2246899999999998777776667899999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|++.+.++++.++.++..+... ....|++++|||+++ ...++. |+..+.. ...
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~----------------------~~~~riI~lSATl~n-~~~la~-wl~~~~~---~~~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYV----------------------NPDARILALSATVSN-ANELAQ-WLNASLI---KSN 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhc----------------------CcCCcEEEEeCccCC-HHHHHH-HhCCCcc---CCC
Confidence 9999999999999988765311 134789999999987 455655 4433221 111
Q ss_pred CCCCcceEEEEE-----Ecc-hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc-----------------
Q psy6409 969 GKPTERIEQIVY-----ILS-EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL----------------- 1023 (1832)
Q Consensus 969 ~~~~~~i~q~~~-----~~~-~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~----------------- 1023 (1832)
..+.+ +...+. ... .......+..++.. ..++++||||++++.|+.++..|...
T Consensus 198 ~r~vp-l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 276 (674)
T PRK01172 198 FRPVP-LKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVY 276 (674)
T ss_pred CCCCC-eEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 11111 111000 110 00011112222222 24678999999999999999888653
Q ss_pred --------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC---------CCCHhHHHH
Q psy6409 1024 --------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM---------AKSIEDYTH 1086 (1832)
Q Consensus 1024 --------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~---------p~s~~~yvQ 1086 (1832)
..++.+|||+|++++|..+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.|
T Consensus 277 ~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Q 355 (674)
T PRK01172 277 DDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQ 355 (674)
T ss_pred cHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHH
Confidence 13588999999999999999999999999999999999999999975555 332 568899999
Q ss_pred HhcccccCCC--CcEEEEEecCCCc-hHHHH------------------HHHHHhcCCcccccccccccccccccC
Q psy6409 1087 RIGRTGRAGK--EGLAVSFCTKDDS-HLFYD------------------LKQMMISSPVTGRAGKEGLAVSFCTKD 1141 (1832)
Q Consensus 1087 r~GRaGR~g~--~G~ai~~~~~~d~-~~~~~------------------l~~~l~~~~~~~~~~~~~~~v~~~~~~ 1141 (1832)
|+|||||.|. .|.+++++...+. ..+.. +..++.+++..+.+.+..++++|++.+
T Consensus 356 m~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~t 431 (674)
T PRK01172 356 MIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNET 431 (674)
T ss_pred HhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhh
Confidence 9999999985 4778888765432 11111 111234677778888888888887543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=423.20 Aligned_cols=319 Identities=21% Similarity=0.216 Sum_probs=250.6
Q ss_pred HHHHHH-HHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 738 EILEII-EKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 738 ~l~~~l-~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
.+++.+ ..++| +|||+|.+||+.++.+ .|+++|||||||||.+|++|++..+. .+++++|
T Consensus 439 ~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------------~g~qvlv 505 (926)
T TIGR00580 439 EWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------------DGKQVAV 505 (926)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------------hCCeEEE
Confidence 344444 55799 5999999999999975 79999999999999999999987652 3578999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH---HHhc-CCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||++||.|++..|++++..+++++..++|+.+..++.. .+.. .++||||||..+ .+.+.+.++++||||
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVID 580 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIID 580 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEee
Confidence 9999999999999999998889999999999887544332 3334 489999999432 345678999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|+|++ +......+..++ ...|+++||||+++....++...+.++..+...
T Consensus 581 Eahrf-----gv~~~~~L~~~~-------------------------~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~ 630 (926)
T TIGR00580 581 EEQRF-----GVKQKEKLKELR-------------------------TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATP 630 (926)
T ss_pred ccccc-----chhHHHHHHhcC-------------------------CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecC
Confidence 99974 223333333332 347899999998776666666666666655443
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
.... ..+.+.+.......-...+...+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++
T Consensus 631 p~~R--~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~ 706 (926)
T TIGR00580 631 PEDR--LPVRTFVMEYDPELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVML 706 (926)
T ss_pred CCCc--cceEEEEEecCHHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHH
Confidence 2221 224444332222211222333332 4578999999999999999999985 789999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
.|++|+++|||||+++++|||+|++++||++++|. +..+|+||+||+||.|+.|.|++|+.+.+
T Consensus 707 ~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 707 EFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred HHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 99999999999999999999999999999999976 68899999999999999999999997653
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=412.17 Aligned_cols=318 Identities=20% Similarity=0.213 Sum_probs=249.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE-EEEcCcHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA-IIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~-dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v-LiLaPtreLa~Qi~~ 1498 (1832)
.||. |||||.++++.++.|+ ++++.||||||||.+|.++++... .....++. +|++|||+||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~----------~~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE----------IGAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc----------ccccccceEEEeCchHHHHHHHHH
Confidence 5897 9999999999999998 577789999999997765554211 11234444 557799999999999
Q ss_pred HHHHhcCCC-----------------------CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-----
Q psy6409 1499 ETNKFGTPL-----------------------GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----- 1550 (1832)
Q Consensus 1499 ~~~~~~~~~-----------------------g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~----- 1550 (1832)
.+.++++.+ ++++..++||.+.+.++..+..+++|||+|+ +++.++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccc
Confidence 999988755 4889999999999999999989999999995 45555444
Q ss_pred -----------ccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc
Q psy6409 1551 -----------VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 1619 (1832)
Q Consensus 1551 -----------~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT 1619 (1832)
.+.++.+||||||| ++++|.+.+..|+..+... ....++|+++||||
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp--------------------~~~rprQtLLFSAT 214 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP--------------------PDFLPLRVVELTAT 214 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC--------------------cccccceEEEEecC
Confidence 27889999999999 6789999999999865200 00123699999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH---HhCCCCcEEEEECchhHHHHHHHHHH
Q psy6409 1620 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1620 l~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l---~~~~~~~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
++..+..+...++.++..+.+.........+.+++ ......+...++..+ .....+++||||||+..|+.++..|.
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~ 293 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP 293 (844)
T ss_pred CCccHHHHHHHHccCCceeecccccccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH
Confidence 99988888878887776665544434444555543 333444443333322 12345789999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHH-----HHHHHhhC----CC-------CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHH
Q psy6409 1697 KLGYNACTLHGGKGQEQRE-----LALNSLKG----GS-------KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760 (1832)
Q Consensus 1697 ~~~~~v~~lHg~ls~~~R~-----~il~~F~~----g~-------~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yi 1760 (1832)
..++ ..+||+|++.+|. .+++.|++ |+ ..|||||+++++||||+. ++||++..| +++|+
T Consensus 294 ~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyI 368 (844)
T TIGR02621 294 KEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQ 368 (844)
T ss_pred hcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHH
Confidence 8876 8999999999999 88999987 54 789999999999999986 899998877 79999
Q ss_pred HHhcccccCCCc-cEEEEEeeC
Q psy6409 1761 HRIGRTGRAGKE-GLAVSFCTK 1781 (1832)
Q Consensus 1761 QRiGRaGR~g~~-G~ai~~~~~ 1781 (1832)
||+||+||+|.. +.++++++.
T Consensus 369 QRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 369 QRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHhcccCCCCCCCCceEEEEee
Confidence 999999999885 455777654
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=404.30 Aligned_cols=371 Identities=23% Similarity=0.310 Sum_probs=292.0
Q ss_pred HcCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~-g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
-++|..++.+|..++|.++. ..|+|||||||||||.+|+|.||+.+.+ +........++.++|||+|+++||.++++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~--~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE--HEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh--hccccccccCCceEEEEechHHHHHHHHH
Confidence 46888999999999999995 5799999999999999999999999876 22223334567899999999999999999
Q ss_pred HHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc---cccCCceeEEEccchhhhcCCChHHH
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY---LVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~---~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
.|.+-+..+|+.|..++|+......... .++|||+||++|.-+-+.+. ..++.+.+|||||+| |+....++.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~tei~---~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTEIA---DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHHHH---hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 9999888999999999999886655422 69999999999965544432 346789999999999 7777899999
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC--CcE-EEEcccCCCCcceEE
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR--PAT-VYIGSVGKPTERIEQ 1652 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~--p~~-v~i~~~~~~~~~i~q 1652 (1832)
+.|+.++.. .........++|++|||+|+..+ ++. ||+- +.. +.+...-+|. .+.+
T Consensus 259 EtiVaRtlr------------------~vessqs~IRivgLSATlPN~eD-vA~-fL~vn~~~glfsFd~~yRPv-pL~~ 317 (1230)
T KOG0952|consen 259 ETIVARTLR------------------LVESSQSMIRIVGLSATLPNYED-VAR-FLRVNPYAGLFSFDQRYRPV-PLTQ 317 (1230)
T ss_pred HHHHHHHHH------------------HHHhhhhheEEEEeeccCCCHHH-HHH-HhcCCCccceeeeccccccc-ceee
Confidence 999987631 11223345789999999998754 333 3332 233 3333333333 3444
Q ss_pred EEEEcchh---h--------HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc-----------------------
Q psy6409 1653 IVYILSEQ---D--------KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL----------------------- 1698 (1832)
Q Consensus 1653 ~~~~~~~~---~--------k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~----------------------- 1698 (1832)
.+.-.... . ....+.+.+. .+.+++|||.++..+...|+.|.+.
T Consensus 318 ~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 318 GFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred eEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 44433222 1 1222233332 4689999999999999999988653
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eCCCC------CHHHHHHHhccccc
Q psy6409 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDMAK------SIEDYTHRIGRTGR 1768 (1832)
Q Consensus 1699 ~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d~P~------s~~~yiQRiGRaGR 1768 (1832)
..+.++||+||...+|..+.+.|..|.++||+||.+++||+|+|+..++|. ||.-. .+-+.+|..|||||
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGR 475 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGR 475 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCC
Confidence 246789999999999999999999999999999999999999998766663 44433 57899999999999
Q ss_pred C--CCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCccc
Q psy6409 1769 A--GKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1769 ~--g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~ 1820 (1832)
. ++.|.++++-+.+..++|..|..--.+.+ |.+-+.|.+|.||||.-|||.
T Consensus 476 PqFd~~G~giIiTt~dkl~~Y~sLl~~~~piE-S~~~~~L~dnLnAEi~LgTVt 528 (1230)
T KOG0952|consen 476 PQFDSSGEGIIITTRDKLDHYESLLTGQNPIE-SQLLPCLIDNLNAEISLGTVT 528 (1230)
T ss_pred CCCCCCceEEEEecccHHHHHHHHHcCCChhH-HHHHHHHHHhhhhheeeceee
Confidence 4 67899999999888999999988888887 899999999999999999998
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=408.80 Aligned_cols=341 Identities=27% Similarity=0.360 Sum_probs=280.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|++.+.+.+++. |.+|||.|.+|||.+.+|+|++++||||||||+++.||++..|.... ......+..+|||.|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCcH
Confidence 789999999988 99999999999999999999999999999999999999999987642 1123467899999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--ccCCceeEEEecchhhh
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--VLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--~l~~~~~lViDEaH~l~ 892 (1832)
|+|+..+...+...+..+|+.+...+|+++..+.....++.+||+|+||+.|.-++..+.+ .|.++++|||||.|.+.
T Consensus 83 kALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 9999999999999999999999999999998888888889999999999999777765433 68999999999999999
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC--CcEEEEcccCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR--PATVYIGSVGK 970 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~--p~~v~~~~~~~ 970 (1832)
+...+.++.--+.++.. +. ...|.|++|||..+ .+..++..... +..+.......
T Consensus 163 ~sKRG~~Lsl~LeRL~~-------------------l~---~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k 219 (814)
T COG1201 163 ESKRGVQLALSLERLRE-------------------LA---GDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK 219 (814)
T ss_pred ccccchhhhhhHHHHHh-------------------hC---cccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC
Confidence 88888888777766631 11 15899999999975 44466555544 33332222111
Q ss_pred CCcceEEEEEE-------cchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHH
Q psy6409 971 PTERIEQIVYI-------LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 971 ~~~~i~q~~~~-------~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~i 1042 (1832)
...+.-.... .........+.++++.+. .+|||+||+..++.++..|...+ ..+..|||+++.+.|..+
T Consensus 220 -~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 220 -KLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred -cceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence 1111111100 011234566666666544 79999999999999999999887 899999999999999999
Q ss_pred HHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhccccc-CCCCcEEEEEecC
Q psy6409 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR-AGKEGLAVSFCTK 1106 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR-~g~~G~ai~~~~~ 1106 (1832)
.+.|++|+.+++|||+.++-|||+.+|++||+|+.|+++..++||+||+|+ .|....++.+...
T Consensus 297 E~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 297 EERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999999999999999997 4555677777776
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=404.93 Aligned_cols=342 Identities=27% Similarity=0.355 Sum_probs=278.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
-|++.+.+.++.. |..|||.|.+|||.+.+|+|++++||||||||+|+.||++..+.... ......+-.+|||.|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCc
Confidence 3789999999988 99999999999999999999999999999999999999999887642 112345789999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhh
Q psy6409 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1489 treLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~l 1566 (1832)
.|+|..++...+...+..+|+.+..-+|+++..+....+.+.+||+|+|||.|.-++.... -.+.++.+||+||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 9999999999999999999999999999999998888888899999999999988886643 36899999999999999
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC--CcEEEEcccC
Q psy6409 1567 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR--PATVYIGSVG 1644 (1832)
Q Consensus 1567 l~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~--p~~v~i~~~~ 1644 (1832)
.+.-.+.++.--+.++... ....|.+++|||..+.. ..++..... +..+......
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l----------------------~~~~qRIGLSATV~~~~-~varfL~g~~~~~~Iv~~~~~ 218 (814)
T COG1201 162 AESKRGVQLALSLERLREL----------------------AGDFQRIGLSATVGPPE-EVAKFLVGFGDPCEIVDVSAA 218 (814)
T ss_pred hccccchhhhhhHHHHHhh----------------------CcccEEEeehhccCCHH-HHHHHhcCCCCceEEEEcccC
Confidence 8877777666655554311 12579999999998653 334333332 3333222221
Q ss_pred CCCcceEEEEEEcc--------hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcC-CcEEEEcCCCCHHHHH
Q psy6409 1645 KPTERIEQIVYILS--------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKGQEQRE 1715 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~--------~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~-~~v~~lHg~ls~~~R~ 1715 (1832)
. ...+.-. .+.. .......+.++++++ ..+|||+||+..|+.++..|...+ ..+..|||+++.+.|.
T Consensus 219 k-~~~i~v~-~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~ 294 (814)
T COG1201 219 K-KLEIKVI-SPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRL 294 (814)
T ss_pred C-cceEEEE-ecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHH
Confidence 1 1111111 1111 123445566666655 489999999999999999999887 8999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhccccc-CCCccEEEEEeeCC
Q psy6409 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR-AGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1716 ~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR-~g~~G~ai~~~~~~ 1782 (1832)
.+++.|++|+.+++|||+.++.|||+.+|++||+|+.|.++..++||+||+|+ .|....++++..+.
T Consensus 295 ~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 295 EVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred HHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999998 46668888887773
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=392.59 Aligned_cols=334 Identities=28% Similarity=0.399 Sum_probs=271.9
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
..|+. +||..++|-|.++|..+++|+|+|++.|||+||++||.||.+.. ...+|||.|..+|..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44544 69999999999999999999999999999999999999999842 236999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH---hcC-CceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---RLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l---~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g 895 (1832)
.+...+... |+.+.++.+..+..+....+ ..+ .++++-+|++|..--....+.-..+.++|||||||+++||
T Consensus 72 DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 72 DQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 999998886 78899999887776654433 333 7999999999975443344446678999999999999998
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC-CCcEEEEcccCCCC
Q psy6409 896 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPT 972 (1832)
Q Consensus 896 --f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~-~p~~v~~~~~~~~~ 972 (1832)
|+|.+..+...... -+...++.+|||.++.+..-+...|. +...+++.+...++
T Consensus 148 hdFRP~Y~~lg~l~~~-----------------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN 204 (590)
T COG0514 148 HDFRPDYRRLGRLRAG-----------------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN 204 (590)
T ss_pred CccCHhHHHHHHHHhh-----------------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch
Confidence 99999988665421 12467999999999988766655544 33345566666665
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
..++..... ....+...+.+ +......+.||||.|++.|+.+++.|...|+.+..+||||+.++|+.+.+.|..++++
T Consensus 205 i~~~v~~~~-~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 205 LALKVVEKG-EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred hhhhhhhcc-cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 443322211 22223332222 2245667799999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
|+|||.++++|||.|+|.+|||||+|.|+++|+|.+|||||+|....|++|+.+.|......+.+.
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997776666543
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=414.88 Aligned_cols=317 Identities=21% Similarity=0.215 Sum_probs=249.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1414 ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
.......++| .|||+|.+||+.++.+ .|++++||||||||.+|++|++..+. .+.+++||+
T Consensus 441 ~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------------~g~qvlvLv 507 (926)
T TIGR00580 441 QQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------------DGKQVAVLV 507 (926)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------------hCCeEEEEe
Confidence 3444456799 5999999999999975 79999999999999999999987653 267899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
||++||.|++..+++++..+++++..++|+.+..++.. .+.. .++|||+||..+ ...+.+.++++|||||+
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEE 582 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecc
Confidence 99999999999999998888999999998877554332 3333 489999999532 34567899999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|++ +......+..++ ..+|+++||||+.+....+....+.++..+...+.
T Consensus 583 hrf-----gv~~~~~L~~~~-------------------------~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELR-------------------------TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE 632 (926)
T ss_pred ccc-----chhHHHHHHhcC-------------------------CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC
Confidence 984 222233333332 34789999999887766666666666666554433
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1644 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
+. ..+...+.......-...+...+. ..++++||||++.+++.++..|... ++.+..+||+|++.+|+.+++.|
T Consensus 633 ~R--~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F 708 (926)
T TIGR00580 633 DR--LPVRTFVMEYDPELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEF 708 (926)
T ss_pred Cc--cceEEEEEecCHHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 22 124443333322211222222222 3578999999999999999999985 78999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
++|+++|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++|+.+.
T Consensus 709 ~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 709 YKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999999999999999999999975 6889999999999999999999998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=422.51 Aligned_cols=318 Identities=21% Similarity=0.212 Sum_probs=252.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
.+..+....++| .||++|.+||+.++.+ +|+++||+||||||.+|+++++..+ ..+++++|
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~------------~~g~qvlv 654 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV------------ENHKQVAV 654 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH------------HcCCeEEE
Confidence 355667788899 7999999999999987 8999999999999999999887643 24788999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh----cCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR----LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~----~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||++||.|++..|.+++..+++++..++|+.+..++...+. ..++||||||+.+ +..+.+.++++||||
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVID 729 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVD 729 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEe
Confidence 9999999999999999988888899999999988766654432 3589999999744 234567899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|+|++ |+. ....+..++ ...|+++||||+++....++..++.++..+...
T Consensus 730 Eahrf---G~~--~~e~lk~l~-------------------------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~ 779 (1147)
T PRK10689 730 EEHRF---GVR--HKERIKAMR-------------------------ADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 (1147)
T ss_pred chhhc---chh--HHHHHHhcC-------------------------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecC
Confidence 99986 332 123333332 347999999998888888888888888766543
Q ss_pred ccCCCCcceEEEEEEcchh-hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~-~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il 1043 (1832)
.... ..+.+.+...... .+...+.++. .+++++||||+++.++.+++.|... ++++..+||+|++.+|..++
T Consensus 780 p~~r--~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im 854 (1147)
T PRK10689 780 PARR--LAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 (1147)
T ss_pred CCCC--CCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH
Confidence 3221 2344443333222 2222233332 3568999999999999999999987 78999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC-CCHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p-~s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
..|++|+++|||||+++++|||+|+|++||..+.. .+..+|+||+||+||.|..|.|++++...
T Consensus 855 ~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 99999999999999999999999999999954442 25668999999999999999999888654
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=387.94 Aligned_cols=334 Identities=27% Similarity=0.389 Sum_probs=270.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1416 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1416 ~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
..|+. +||..++|-|.++|..+++|+|+|++.|||+||++||.+|++.. ...+|||.|..+|..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44554 79999999999999999999999999999999999999999841 236999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh---hc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---RL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l---~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g 1570 (1832)
.+.+.++.. |+.+..+.+..+.++....+ .. ..+++.-+|+++..---...+.-..+.++|||||||+.+||
T Consensus 72 DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 72 DQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 999999886 68888898887776654332 22 37999999999875433334446688999999999999998
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC-CcEEEEcccCCCC
Q psy6409 1571 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPT 1647 (1832)
Q Consensus 1571 --f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~-p~~v~i~~~~~~~ 1647 (1832)
|+|.+..+....... ++..++.+|||.++.+..-+...|.- ...+.+.+.++++
T Consensus 148 hdFRP~Y~~lg~l~~~~-----------------------~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN 204 (590)
T COG0514 148 HDFRPDYRRLGRLRAGL-----------------------PNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN 204 (590)
T ss_pred CccCHhHHHHHHHHhhC-----------------------CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch
Confidence 999999887654311 24579999999999887666555543 3345666666666
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1648 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
..+...... ....+...+.+ +......+.||||.|++.|+.++..|...|+.+..|||||+.++|+.+.+.|..+++.
T Consensus 205 i~~~v~~~~-~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 205 LALKVVEKG-EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred hhhhhhhcc-cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 433222111 12222222222 1245677899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|+|||.+++.|||-|+|.+|||||+|.|+++|+|-+|||||.|....|++|+.+.|..+...+.+.
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997665555443
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=401.28 Aligned_cols=317 Identities=23% Similarity=0.312 Sum_probs=239.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
+...+..++| +||++|.+|++.+..+ .|++++||||||||++|++|++..+. .|.+++||+
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~lila 317 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAALMA 317 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEEe
Confidence 3445566788 6999999999999986 48999999999999999999987652 478899999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH---HHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||++||.|+++.+++++..+|+++..++|+.+..+. ...+.. .++|+||||+.+.+ .+.+.++++|||||+
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQ 392 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEech
Confidence 999999999999999999999999999999985443 334444 49999999998743 346789999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|++.. .....+... ....++++||||+.+....+.. ..+.....+...
T Consensus 393 Hrfg~-----~qr~~l~~~-------------------------~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~ 440 (681)
T PRK10917 393 HRFGV-----EQRLALREK-------------------------GENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDEL 440 (681)
T ss_pred hhhhH-----HHHHHHHhc-------------------------CCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecC
Confidence 97531 112222111 1236899999998665443333 222222222222
Q ss_pred CCCCcceEEEEEEcchhhHH-HHHHHHHHcCCCCCEEEEEcccc--------hHHHHHHHHHHc--CCcEEEEcCCCCHH
Q psy6409 969 GKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKK--------GADVLAKGLEKL--GYNACTLHGGKGQE 1037 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~k~-~~L~~~l~~~~~~~vIVFv~s~~--------~~~~l~~~L~~~--g~~v~~lhg~~~~~ 1037 (1832)
......+...+.......+. ..+...+ ..+.+++|||+..+ .++.+++.|... ++.+..+||+|++.
T Consensus 441 p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 441 PPGRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred CCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHH
Confidence 12122344333322222221 2232333 24568999999654 456677888765 57899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
+|..+++.|++|+++|||||+++++|||+|++++||+|++|. +...|.||+||+||.|..|.|+++++..
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 999999999999999999999999999999999999999997 6788999999999999999999999643
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=412.97 Aligned_cols=319 Identities=21% Similarity=0.209 Sum_probs=252.7
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEE
Q psy6409 1411 PTEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484 (1832)
Q Consensus 1411 ~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vL 1484 (1832)
.++..+....++| .||++|.+||+.++.+ +|++++|+||||||.+|+++++..+. .+.+|+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------~g~qvl 653 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------NHKQVA 653 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------cCCeEE
Confidence 3455677788999 7999999999999987 89999999999999999988876542 478899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh---h-cCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---R-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1485 iLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l---~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
||+||++||.|++..+++++..+++++..++|+.+..++...+ . ..++|||+||+.+ +..+.+.++++|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEE
Confidence 9999999999999999998777888998899988876655433 2 3589999999743 23456789999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||+|++ |+. ....+..++ ..+|+++||||+++....++...+.++..+..
T Consensus 729 DEahrf---G~~--~~e~lk~l~-------------------------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~ 778 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAMR-------------------------ADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 (1147)
T ss_pred echhhc---chh--HHHHHHhcC-------------------------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEec
Confidence 999986 332 122333332 45789999999988888888778888877665
Q ss_pred cccCCCCcceEEEEEEcchh-hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~-~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~i 1717 (1832)
.+... ..+.+.+...... .+...+..+. ..++++||||++..++.++..|... ++++..+||+|++.+|..+
T Consensus 779 ~p~~r--~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 779 PPARR--LAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 (1147)
T ss_pred CCCCC--CCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHH
Confidence 43322 2344444333222 2222222332 3468999999999999999999987 7899999999999999999
Q ss_pred HHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC-CCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1718 l~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P-~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+..|++|+++|||||+++++|||+|++++||..+.. .+..+|+||+||+||.|+.|.|++++.+.
T Consensus 854 m~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999999999999999999999999955432 25668999999999999999999887654
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=416.87 Aligned_cols=312 Identities=24% Similarity=0.282 Sum_probs=230.4
Q ss_pred EEecCCChHHHHHHHHHHHHHhhchhhh-hccccCCCcEEEEEccchhHHHHHHHHHHHhc------------CCCCCeE
Q psy6409 770 GVAETGSGKTLAFLLPLLVWIQSLPKIA-RMEDADQGPYAIIMAPTRELAQQIEEETNKFG------------TPLGIRT 836 (1832)
Q Consensus 770 v~apTGSGKTla~llpil~~i~~~~~~~-~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~------------~~~~i~v 836 (1832)
|+||||||||++|.||+|..+...+... .......+.++|||+|+++|+.|+.+.++..+ ..+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998876432100 00011346899999999999999999887521 2357999
Q ss_pred EEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 837 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915 (1832)
Q Consensus 837 ~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~ 915 (1832)
...+|+.+..++...++..++|||+||++|..+|.++. ..++++++|||||+|.|.+..++.++..++.++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l----- 155 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL----- 155 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh-----
Confidence 99999999888777777789999999999988876543 468999999999999999887888888777766310
Q ss_pred CchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC-CCcEEEEcccCCCCcceEEEEEEcchhhH-------
Q psy6409 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTERIEQIVYILSEQDK------- 987 (1832)
Q Consensus 916 ~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~-~p~~v~~~~~~~~~~~i~q~~~~~~~~~k------- 987 (1832)
.....|+|+||||+++ .+.++..+.. .|..+. .........+...+ .+....+
T Consensus 156 ----------------~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~v-p~~d~~~~~~~~~~ 216 (1490)
T PRK09751 156 ----------------LHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVV-NPPAMRHPQIRIVV-PVANMDDVSSVASG 216 (1490)
T ss_pred ----------------CCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEE-CCCCCcccceEEEE-ecCchhhccccccc
Confidence 1235799999999987 4566654433 344443 22222222222111 1111000
Q ss_pred ---------H-----HHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHcC----------------------------
Q psy6409 988 ---------R-----KKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLG---------------------------- 1024 (1832)
Q Consensus 988 ---------~-----~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~g---------------------------- 1024 (1832)
. .....++.. ....++||||||+..|+.++..|++..
T Consensus 217 ~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1490)
T PRK09751 217 TGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRV 296 (1490)
T ss_pred cccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcc
Confidence 0 001112221 235689999999999999999997641
Q ss_pred -----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC-CCCc
Q psy6409 1025 -----YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKEG 1098 (1832)
Q Consensus 1025 -----~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~-g~~G 1098 (1832)
+.+.+|||+|++++|..+++.|++|.++|||||+++++||||++|++||+|+.|.++.+|+||+|||||. |..+
T Consensus 297 ~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s 376 (1490)
T PRK09751 297 QSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVS 376 (1490)
T ss_pred ccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCcc
Confidence 1267899999999999999999999999999999999999999999999999999999999999999996 3334
Q ss_pred EEEEEec
Q psy6409 1099 LAVSFCT 1105 (1832)
Q Consensus 1099 ~ai~~~~ 1105 (1832)
.++++..
T Consensus 377 ~gli~p~ 383 (1490)
T PRK09751 377 KGLFFPR 383 (1490)
T ss_pred EEEEEeC
Confidence 5553333
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=404.58 Aligned_cols=369 Identities=24% Similarity=0.314 Sum_probs=278.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 734 ~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
.+++.+.+.++..|+.+++|-|+.++...+ +++|+|+|+|||||||+++++.|+..+.+ .+.++||||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----------~~~k~vYiv 83 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-----------GGGKVVYIV 83 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----------cCCcEEEEe
Confidence 367788999999999888887777776665 56999999999999999999999987743 267899999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|+|+||.|+++.|+ ....+|++|...+|+........ .+++|+|+||++|-.++.+....+..+++|||||+|.+.
T Consensus 84 PlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l---~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 84 PLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERL---ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred ChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhh---ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 99999999999999 44678999999999998665433 379999999999944444445567899999999999888
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE--EEEcccCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT--VYIGSVGK 970 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~--v~~~~~~~ 970 (1832)
|..+++.++.|+.++...+ ...|++++|||+|+. ..++...-.++.. +.+... .
T Consensus 160 d~~RG~~lE~iv~r~~~~~----------------------~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l-~ 215 (766)
T COG1204 160 DRTRGPVLESIVARMRRLN----------------------ELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPL-R 215 (766)
T ss_pred CcccCceehhHHHHHHhhC----------------------cceEEEEEeeecCCH-HHHHHHhCCcccccCCCCccc-c
Confidence 8779999999998875221 237999999999984 5566655444431 111111 1
Q ss_pred CCcceEEEEEEcchhhH------HHHHHH-HHHc-CCCCCEEEEEcccchHHHHHHHHHHc-------------------
Q psy6409 971 PTERIEQIVYILSEQDK------RKKLME-VLNR-GVKKPVIIFVNQKKGADVLAKGLEKL------------------- 1023 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~~~k------~~~L~~-~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~------------------- 1023 (1832)
......+.+.......| ...++. ++.. ..++++||||++++.+...++.|...
T Consensus 216 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 216 RGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred cCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 12223333333332221 122222 2222 25679999999999999999988631
Q ss_pred ------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE----EcC-----
Q psy6409 1024 ------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYD----- 1076 (1832)
Q Consensus 1024 ------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d----- 1076 (1832)
-.++++||+||+.++|..+.+.|+.|.++|||||+++++|+|+|+-.+|| .|+
T Consensus 296 ~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 296 ILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCe
Confidence 13578899999999999999999999999999999999999999988888 577
Q ss_pred CCCCHhHHHHHhcccccCCCC--cEEEEEecCC-Cch-------------HHHHHHHHHhcCCccccccccccccccccc
Q psy6409 1077 MAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD-DSH-------------LFYDLKQMMISSPVTGRAGKEGLAVSFCTK 1140 (1832)
Q Consensus 1077 ~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~-d~~-------------~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~ 1140 (1832)
.+.++-+|+|++|||||+|.+ |.++++.+.. +.. +...|-...+.+..++.+.....++.|+..
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~ 455 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLEL 455 (766)
T ss_pred EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHH
Confidence 466899999999999999876 8888888443 222 222333334566677778888888888854
Q ss_pred C
Q psy6409 1141 D 1141 (1832)
Q Consensus 1141 ~ 1141 (1832)
.
T Consensus 456 ~ 456 (766)
T COG1204 456 T 456 (766)
T ss_pred H
Confidence 3
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=396.05 Aligned_cols=317 Identities=23% Similarity=0.300 Sum_probs=239.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
.+-..+..++| .||++|.+|++.+..+ .|++++||||||||++|++|++..+. .|.+++||
T Consensus 250 ~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~lil 316 (681)
T PRK10917 250 LLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAALM 316 (681)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEE
Confidence 34455567888 7999999999999876 48999999999999999999987653 37789999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+||++||.|++..+++++..+|+++..++|+.+..... ..+.. .++|+|+||+.+.+ .+.+.++++|||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 99999999999999999998999999999999864432 33444 49999999987743 34578999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
+|++.. .....+... ...+++++||||+.+....+......++..+...+
T Consensus 392 ~Hrfg~-----~qr~~l~~~-------------------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p 441 (681)
T PRK10917 392 QHRFGV-----EQRLALREK-------------------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP 441 (681)
T ss_pred hhhhhH-----HHHHHHHhc-------------------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC
Confidence 998621 111111111 12367999999987665443332212222222111
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHh--CCCCcEEEEECch--------hHHHHHHHHHHHc--CCcEEEEcCCCC
Q psy6409 1643 VGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQK--------KGADVLAKGLEKL--GYNACTLHGGKG 1710 (1832)
Q Consensus 1643 ~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~--------~~a~~l~~~L~~~--~~~v~~lHg~ls 1710 (1832)
.+ ...+...+..... ...+.+.+.. ....+++|||+.+ ..+..+++.|... ++.+..+||+|+
T Consensus 442 ~~--r~~i~~~~~~~~~---~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~ 516 (681)
T PRK10917 442 PG--RKPITTVVIPDSR---RDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMK 516 (681)
T ss_pred CC--CCCcEEEEeCccc---HHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 11 2223333332222 2223333322 2457899999954 4566778888765 578999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+.+|..+++.|++|+++|||||+++++|||+|++++||+++.|. ....|.||+||+||.|..|.|+++++..
T Consensus 517 ~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 517 PAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 99999999999999999999999999999999999999999997 5788999999999999999999999643
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=413.14 Aligned_cols=325 Identities=27% Similarity=0.326 Sum_probs=252.3
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.+++ .|+ +|+++|..++|.++.|+|++++||||||||+ |++|++.++. ..++++|||+||++||.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-----------~~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-----------KKGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH-----------hcCCeEEEEeccHHHHH
Confidence 34433 477 8999999999999999999999999999996 6666665442 23789999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCch-----HHHHHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSR-----EEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~-----~~~~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d 893 (1832)
|+++.++.++...++.+..++|+... .++...+.. +++|+|+|||+|.+++. .+....+++|||||||+|++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 99999999999889988888877542 223334443 58999999999998876 34566799999999999996
Q ss_pred -----------CCCh-HHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhcc-ccccceEEEEEecCChH-HHHHHHHhcCC
Q psy6409 894 -----------MGFE-PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPA-VERLARSYLRR 959 (1832)
Q Consensus 894 -----------~gf~-~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~q~v~~SATl~~~-v~~~~~~~l~~ 959 (1832)
+||. +++..++..++..... ....+....+...... .....|+++||||+++. +.. .++.+
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ 290 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRE 290 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhc
Confidence 7885 7899999888642210 1111112222222111 12368999999999864 332 23455
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccch---HHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~---~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
+..+.++.......++.+.+..+. .+...|.+++... +.++||||+++.. |+.+++.|...|+++..+||+|
T Consensus 291 ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 291 LLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred cceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 666777766666667777776554 5666777777654 3579999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCCC------CHhHHHHHhccccc
Q psy6409 1037 EQRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK------SIEDYTHRIGRTGR 1093 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p~------s~~~yvQr~GRaGR 1093 (1832)
...++.|++|+++|||| ||+++||||+|+ |.+|||||+|+ ....|.||+||+..
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 67889999999974
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=411.14 Aligned_cols=312 Identities=25% Similarity=0.304 Sum_probs=229.7
Q ss_pred EEcCCCchHHHHHHHHHHHHHhhCchhh-cccccCCCcEEEEEcCcHHHHHHHHHHHHHh-----------c-CCCCCeE
Q psy6409 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIA-RMEDADQGPYAIIMAPTRELAQQIEEETNKF-----------G-TPLGIRT 1511 (1832)
Q Consensus 1445 i~ApTGSGKTla~~lpil~~l~~~p~~~-~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~-----------~-~~~g~~v 1511 (1832)
|+||||||||+||.||++..+...+... .......+.++|||+|+++|+.|+++.++.. + ..+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998776532100 0001134689999999999999999988742 1 2357899
Q ss_pred EEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 1512 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 1590 (1832)
Q Consensus 1512 ~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~ 1590 (1832)
...+|+.+..++...+.+.++|||+||++|..++.++. ..++++++|||||+|.|.+..++..+..++.++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l----- 155 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL----- 155 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh-----
Confidence 99999999988776777789999999999999886543 468999999999999999877777776666655311
Q ss_pred CchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--CCcEEEEcccCCCCcceEEEEEEcchhhH------
Q psy6409 1591 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVYIGSVGKPTERIEQIVYILSEQDK------ 1662 (1832)
Q Consensus 1591 ~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~--~p~~v~i~~~~~~~~~i~q~~~~~~~~~k------ 1662 (1832)
.....|+|++|||+++. +.+.. |+. .|..+.. ........+... .......+
T Consensus 156 ----------------~~~~~QrIgLSATI~n~-eevA~-~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~ 215 (1490)
T PRK09751 156 ----------------LHTSAQRIGLSATVRSA-SDVAA-FLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVAS 215 (1490)
T ss_pred ----------------CCCCCeEEEEEeeCCCH-HHHHH-HhcCCCCEEEEC-CCCCcccceEEE-EecCchhhcccccc
Confidence 11457999999999884 55554 443 3444432 222222223221 11111000
Q ss_pred ---------------HHHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHcC---------------------------
Q psy6409 1663 ---------------RKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLG--------------------------- 1699 (1832)
Q Consensus 1663 ---------------~~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~~--------------------------- 1699 (1832)
......++.. ....++||||||++.|+.++..|+...
T Consensus 216 ~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1490)
T PRK09751 216 GTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNR 295 (1490)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhc
Confidence 0011122221 235789999999999999999997641
Q ss_pred ------CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC-CCc
Q psy6409 1700 ------YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKE 1772 (1832)
Q Consensus 1700 ------~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~-g~~ 1772 (1832)
+.+..|||+|++++|..+++.|++|++++||||+++++|||||+|++||+|+.|.++.+|+||+|||||. |..
T Consensus 296 ~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 296 VQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred cccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCc
Confidence 2267899999999999999999999999999999999999999999999999999999999999999995 444
Q ss_pred cEEEEEeeC
Q psy6409 1773 GLAVSFCTK 1781 (1832)
Q Consensus 1773 G~ai~~~~~ 1781 (1832)
+.++++...
T Consensus 376 s~gli~p~~ 384 (1490)
T PRK09751 376 SKGLFFPRT 384 (1490)
T ss_pred cEEEEEeCc
Confidence 556644443
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=393.59 Aligned_cols=318 Identities=22% Similarity=0.315 Sum_probs=238.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
.+.+.+..++| +||++|.+||+.++.+ .+.+++||||||||++|++|++..+. .|.+++||
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvlil 290 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVALM 290 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 45667788999 7999999999999875 36899999999999999999997652 36789999
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH---HHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+||++||.|+++.+++++..+|+++..++|+....+. ...+.. .++|+|+||+.+.+ .+.+.++++|||||
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDE 365 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDE 365 (630)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEec
Confidence 9999999999999999999999999999999886553 233333 47999999998743 34678999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
+|++... +...+..... .....++++||||+.+....+.. ..+.....+..
T Consensus 366 aH~fg~~----qr~~l~~~~~-----------------------~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~ 416 (630)
T TIGR00643 366 QHRFGVE----QRKKLREKGQ-----------------------GGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDE 416 (630)
T ss_pred hhhccHH----HHHHHHHhcc-----------------------cCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeecc
Confidence 9975311 1111211110 00246899999997654433322 22211111111
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccc--------hHHHHHHHHHHc--CCcEEEEcCCCC
Q psy6409 968 VGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKK--------GADVLAKGLEKL--GYNACTLHGGKG 1035 (1832)
Q Consensus 968 ~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~--------~~~~l~~~L~~~--g~~v~~lhg~~~ 1035 (1832)
.......+...+. ....+ ..++..+.. ..+.+++|||+..+ .++.+++.|... ++.+..+||+|+
T Consensus 417 ~p~~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~ 493 (630)
T TIGR00643 417 LPPGRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMK 493 (630)
T ss_pred CCCCCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 1111122333222 22222 333433332 24578999998763 466777777653 688999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
+.+|..+++.|++|+++|||||+++++|||+|++++||+|++|. +...|.||+||+||.|..|.|++++.
T Consensus 494 ~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 494 SDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999997 68889999999999999999999994
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=388.86 Aligned_cols=310 Identities=20% Similarity=0.206 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCChHHHH---------HHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLA---------FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 753 ~iQ~~ai~~il~grdvIv~apTGSGKTla---------~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
.+|.++++.+++|+|+|++|+||||||.+ |++|.+..+... .....+.+++|++|||+||.|+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~------~~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI------DPNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc------ccccCCcEEEEECcHHHHHHHHHH
Confidence 47999999999999999999999999997 444444433211 112245789999999999999999
Q ss_pred HHHHhcCC---CCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHH
Q psy6409 824 ETNKFGTP---LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 900 (1832)
Q Consensus 824 ~~~~~~~~---~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i 900 (1832)
.+.+.... .++.+...+||... .+......+.+|+|+|++.. ...++.+++|||||||.+..++ +.+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHH
Confidence 98875443 36778889999873 22222223689999998631 1258899999999999987654 333
Q ss_pred HHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEE
Q psy6409 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980 (1832)
Q Consensus 901 ~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~ 980 (1832)
..++..++ ...+|+++||||+|..++.+ ..|+.+|..+.+.. .....+++.+.
T Consensus 311 L~llk~~~------------------------~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi 363 (675)
T PHA02653 311 IAVARKHI------------------------DKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYV 363 (675)
T ss_pred HHHHHHhh------------------------hhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEe
Confidence 33333221 11248999999999888877 57888888877653 22244555443
Q ss_pred Ecc----------hhhHHHHHHHHHHc---CCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHH
Q psy6409 981 ILS----------EQDKRKKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 981 ~~~----------~~~k~~~L~~~l~~---~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
... ...+ ..+...+.. ..++++||||+++.+|+.+++.|... ++.+..+||+|++. +.+++.
T Consensus 364 ~~~~~~~~~~~y~~~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ 440 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEK-KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEK 440 (675)
T ss_pred ecCcccccchhhhHHHH-HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHH
Confidence 221 1122 223333332 23468999999999999999999887 78999999999985 566777
Q ss_pred H-hCCCCcEEEecccccccCCCcCcCEEEEcC---CCC---------CHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1046 L-KGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK---------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1046 F-~~G~~~VLVaTdv~~rGlDip~v~~VI~~d---~p~---------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
| ++|+.+||||||+|++|||||+|++||++| .|. |.++|+||+|||||. .+|.|+.|+++++.
T Consensus 441 ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 441 VYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred HhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 7 799999999999999999999999999999 565 889999999999999 67999999998874
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=416.55 Aligned_cols=344 Identities=21% Similarity=0.244 Sum_probs=260.5
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 738 EILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 738 ~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
++.+.+++ .|| +|+++|.+++|.+++|+|++++||||||||++++++++... ..++++|||+||++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~------------~~g~~aLVl~PTre 133 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA------------LKGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH------------hcCCeEEEEECHHH
Confidence 45566665 799 69999999999999999999999999999996666655321 24678999999999
Q ss_pred HHHHHHHHHHHhcCCC--CCeEEEEEcCCchHHHHH---HHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 817 LAQQIEEETNKFGTPL--GIRTVLVVGGLSREEQGF---RLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~--~i~v~~~~Gg~~~~~~~~---~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
||.|+...++.++..+ ++++..++||.+..++.. .+..+ ++|+|+||++|.+.+... ....+++|||||||+
T Consensus 134 La~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ 211 (1638)
T PRK14701 134 LVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECcee
Confidence 9999999999988765 567788999998776533 34444 899999999998876542 227799999999999
Q ss_pred hhc-----------CCChHHHHH----HHHhCCCCCCCCCCchhHHHHHHHHhhccccccce-EEEEEecCChHHHHHHH
Q psy6409 891 MID-----------MGFEPDVQK----ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVERLAR 954 (1832)
Q Consensus 891 l~d-----------~gf~~~i~~----Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q-~v~~SATl~~~v~~~~~ 954 (1832)
|++ +||.+++.. |+...+.....+. .+....+...........| ++++|||+++... ..
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~ 286 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDA---MEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RV 286 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchh---hhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HH
Confidence 987 589999875 4332111100000 1111111111111123344 6789999986422 12
Q ss_pred HhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccch---HHHHHHHHHHcCCcEEEEc
Q psy6409 955 SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~---~~~l~~~L~~~g~~v~~lh 1031 (1832)
.++.++..+.++.......++.+.+..+....+ ..|.+++... +..+||||++++. |+.+++.|...|+++..+|
T Consensus 287 ~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h 364 (1638)
T PRK14701 287 KLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVS 364 (1638)
T ss_pred HHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEec
Confidence 344677778777766666677777766655544 5677777654 5689999999886 4899999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEec----ccccccCCCcC-cCEEEEcCCCC---CHhHHHHHh-------------cc
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAK---SIEDYTHRI-------------GR 1090 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaT----dv~~rGlDip~-v~~VI~~d~p~---s~~~yvQr~-------------GR 1090 (1832)
|+ |..+++.|++|+++||||| ++++||||+|+ |.+|||||+|+ +++.|.|.. ||
T Consensus 365 ~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~ 439 (1638)
T PRK14701 365 AK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEE 439 (1638)
T ss_pred ch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhh
Confidence 95 8999999999999999999 59999999999 99999999999 888777766 99
Q ss_pred cccCCCCcEEEEEecCCC
Q psy6409 1091 TGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1091 aGR~g~~G~ai~~~~~~d 1108 (1832)
+||.|..+.++..+...+
T Consensus 440 a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 440 ELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred hcccCCcchhHHHhHHHH
Confidence 999998888875544444
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=404.71 Aligned_cols=306 Identities=28% Similarity=0.348 Sum_probs=235.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|+ .|+|+|.+++|.++.|+|++++||||||||. |.+|++.++.. .++++|||+||++||.|+++.+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----------~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHH
Confidence 577 8999999999999999999999999999996 55666544421 3788999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcch-----HHHHHHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc------
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSR-----EEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID------ 1568 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~-----~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~------ 1568 (1832)
+.++...++.+..++|+... ..+...+. .+++|+|+||++|.+.+. .+....+++|||||||+|++
T Consensus 144 ~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id 221 (1176)
T PRK09401 144 EKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNID 221 (1176)
T ss_pred HHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchh
Confidence 99998888888877776542 22223344 358999999999998876 35566799999999999996
Q ss_pred -----CCCh-HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhcc-ccCcceEEEEEccCChH-HHHHHHHhcCCCcEEEE
Q psy6409 1569 -----MGFE-PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPA-VERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1569 -----~gf~-~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~q~v~~SATl~~~-~~~~~~~~l~~p~~v~i 1640 (1832)
.||. +.+..++..++..+.. .........+...+.. .....|+++||||+++. +.. .++..+..+.+
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v 296 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEV 296 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEe
Confidence 6785 6899999888742210 0001111111111111 12368999999999874 332 23445555666
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhH---HHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~---a~~l~~~L~~~~~~v~~lHg~ls~~~R~~i 1717 (1832)
+.......++.+.+..+. .+...+..++.... ..+||||+++.. |+.++..|...|+.+..+||+| ...
T Consensus 297 ~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~ 368 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERK 368 (1176)
T ss_pred cCcccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHH
Confidence 666555667777776654 56677888876553 589999999887 9999999999999999999999 234
Q ss_pred HHHhhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCCC
Q psy6409 1718 LNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK 1754 (1832)
Q Consensus 1718 l~~F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P~ 1754 (1832)
++.|++|+++|||| |++++||||+|+ |.+|||||+|.
T Consensus 369 l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 369 FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 59999999999999 699999999999 89999999996
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=387.40 Aligned_cols=320 Identities=22% Similarity=0.319 Sum_probs=239.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
..+.+.+..++| .||++|.+|++.++.+ .+.+++||||||||++|++|++..+. .+.+++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvli 289 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVAL 289 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEE
Confidence 445567788999 7999999999999876 36899999999999999999987653 3678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
|+||++||.|+++.+++++..+|+++..++|+....... ..+.. .++|||+||+.+.+ .+.+.++++||||
T Consensus 290 laPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVID 364 (630)
T TIGR00643 290 MAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIID 364 (630)
T ss_pred ECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEe
Confidence 999999999999999999988999999999998866532 23333 47999999997743 3567899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|+|++.. .+...+..... ....+++++||||+.+....+.. ..+.....+.
T Consensus 365 EaH~fg~----~qr~~l~~~~~-----------------------~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~ 415 (630)
T TIGR00643 365 EQHRFGV----EQRKKLREKGQ-----------------------GGFTPHVLVMSATPIPRTLALTV--YGDLDTSIID 415 (630)
T ss_pred chhhccH----HHHHHHHHhcc-----------------------cCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeec
Confidence 9997531 11112222111 00246899999998665433322 1111111111
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECch--------hHHHHHHHHHHHc--CCcEEEEcCCC
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQK--------KGADVLAKGLEKL--GYNACTLHGGK 1709 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~--------~~a~~l~~~L~~~--~~~v~~lHg~l 1709 (1832)
........+...+. .... ...++..+... ...+++|||+.+ ..+..++..|... ++.+..+||+|
T Consensus 416 ~~p~~r~~i~~~~~--~~~~-~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 416 ELPPGRKPITTVLI--KHDE-KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred cCCCCCCceEEEEe--Ccch-HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 11111122322222 2222 23444444332 457899999876 4566777777753 78899999999
Q ss_pred CHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1710 s~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
++.+|..+++.|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|..|.|++++..
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 999999999999999999999999999999999999999999987 688999999999999999999999943
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=394.24 Aligned_cols=371 Identities=24% Similarity=0.314 Sum_probs=273.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il-~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
.+++.+.+.++..|+...+|.|+.++...+ .++|+|+++|||||||+++++.|+..+.+ .+.++||||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----------~~~k~vYiv 83 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-----------GGGKVVYIV 83 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----------cCCcEEEEe
Confidence 478888899998999777777777776555 56999999999999999999999987754 267899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
|+++||.|.+++|+++ ..+|++|...+|+......... +++|||+|||+|..++++....+..+++|||||+|.+.
T Consensus 84 PlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~l~---~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 84 PLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDERLA---RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred ChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchhhhc---cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 9999999999999944 5679999999999986654333 79999999999999999988889999999999999777
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE--EEEcccCC
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT--VYIGSVGK 1645 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~--v~i~~~~~ 1645 (1832)
+...++.++.|+..+...+ ...|++++|||+|+..+ ++.+.-.++.. +...+...
T Consensus 160 d~~RG~~lE~iv~r~~~~~----------------------~~~rivgLSATlpN~~e-vA~wL~a~~~~~~~rp~~l~~ 216 (766)
T COG1204 160 DRTRGPVLESIVARMRRLN----------------------ELIRIVGLSATLPNAEE-VADWLNAKLVESDWRPVPLRR 216 (766)
T ss_pred CcccCceehhHHHHHHhhC----------------------cceEEEEEeeecCCHHH-HHHHhCCcccccCCCCccccc
Confidence 7779999999998876322 23799999999998754 44322222221 11111111
Q ss_pred CCcceEEEEEEcchhh-------HHHHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHc-------------------
Q psy6409 1646 PTERIEQIVYILSEQD-------KRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL------------------- 1698 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~-------k~~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~------------------- 1698 (1832)
+... .+.+....... ....+..++.. ..++++||||+|++.+...++.|...
T Consensus 217 ~v~~-~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 217 GVPY-VGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred CCcc-ceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 1111 22222222111 12223333332 25679999999999999999888730
Q ss_pred ------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC-----
Q psy6409 1699 ------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD----- 1751 (1832)
Q Consensus 1699 ------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d----- 1751 (1832)
..++++||+||+..+|..+.+.|+.|+++|||||+++++|||+|+-.+||- |+
T Consensus 296 ~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 296 ILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCe
Confidence 246889999999999999999999999999999999999999998777773 66
Q ss_pred CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCccc
Q psy6409 1752 MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1752 ~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~ 1820 (1832)
.+.++-+|+||+|||||.| ..|.++++++..+...+.... +.... ...+-..|.+-.+++..-+++.
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~-~~~~~-~e~~~s~l~~~~~~~~~l~~v~ 444 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAEL-YIQSE-PEPIESKLGDELNLRTFLLGVI 444 (766)
T ss_pred EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHH-hhccC-cchHHHhhcccccchheEEEEE
Confidence 5668999999999999987 458888888655443332211 11111 1223444555556666666554
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=346.98 Aligned_cols=290 Identities=29% Similarity=0.538 Sum_probs=237.0
Q ss_pred cEEEEEccchhHHHHHHHHHHHh---cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKF---GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~---~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
|.++|+-|.||||.|++..+++| .....++...++||.....|...+..+++|+|+||+|+.+.+..+.+.+.+|.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 38999999999999999966655 444456777899999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-HHHHHHHHhcCCCc
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRRPA 961 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~v~~~~~~~l~~p~ 961 (1832)
+|+||||.++..|+-+.+..+...+|. +.+.....|.+++|||+.. .+..+....+.-|.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~-------------------~tsdg~rlq~~vCsatlh~feVkk~~ervmhfpt 427 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPH-------------------MTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPT 427 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchh-------------------hhcCCcccccceeeeEEeEEEeeehhhhhccCce
Confidence 999999999999999888888877763 2233456799999999843 34455666666677
Q ss_pred EEEEcccCCCCcceEEEEEEcchh------------------------------hHHHHHHH---------HHHcCCCCC
Q psy6409 962 TVYIGSVGKPTERIEQIVYILSEQ------------------------------DKRKKLME---------VLNRGVKKP 1002 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~~~~------------------------------~k~~~L~~---------~l~~~~~~~ 1002 (1832)
.+........+..+.+.+..+... ........ .+..+...+
T Consensus 428 wVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdk 507 (725)
T KOG0349|consen 428 WVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDK 507 (725)
T ss_pred eEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCc
Confidence 777666665555555544332110 00011111 222334568
Q ss_pred EEEEEcccchHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC
Q psy6409 1003 VIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079 (1832)
Q Consensus 1003 vIVFv~s~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~ 1079 (1832)
+||||.++..|+.|-+++.+.| +.+.++||+..+.+|...++.|+.+..+.|||||+++|||||-++-++||..+|.
T Consensus 508 aiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd 587 (725)
T KOG0349|consen 508 AIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD 587 (725)
T ss_pred eEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc
Confidence 9999999999999999998875 7899999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHH
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~ 1114 (1832)
+...|+|||||.||+-+-|.||+++...-...++.
T Consensus 588 ~k~nyvhrigrvgraermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 588 DKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred ccchhhhhhhccchhhhcceeEEEeeccchheeeh
Confidence 99999999999999999999999998876666665
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=392.27 Aligned_cols=301 Identities=19% Similarity=0.275 Sum_probs=234.3
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCCCC
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 834 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~~i 834 (1832)
.+.+..+..++++|++|+||||||++|.+|++... ..+.+++|++|||++|.|++..+. .++...|.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~------------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP------------GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh------------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 34555666788999999999999999999998653 124689999999999999999885 56666788
Q ss_pred eEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch-hhhcCCChHHH-HHHHHhCCCCCC
Q psy6409 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPDV-QKILEYMPVTNL 912 (1832)
Q Consensus 835 ~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH-~l~d~gf~~~i-~~Il~~l~~~~~ 912 (1832)
.|++.+++.+. ....++|+|+|||+|++.+... ..++.+++||||||| ++++.+|.-.+ ..+...+
T Consensus 76 ~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l----- 143 (819)
T TIGR01970 76 TVGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL----- 143 (819)
T ss_pred EEEEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc-----
Confidence 88877776542 3346899999999999998764 479999999999999 57776654332 2233322
Q ss_pred CCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHH----
Q psy6409 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR---- 988 (1832)
Q Consensus 913 ~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~---- 988 (1832)
....|+|+||||++... + ..|+.++..+.+.... ..+++.+.......+.
T Consensus 144 --------------------r~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 144 --------------------REDLKILAMSATLDGER--L-SSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred --------------------CCCceEEEEeCCCCHHH--H-HHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHH
Confidence 23579999999998653 3 4566555555443322 1244444444333332
Q ss_pred -HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 989 -KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 989 -~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~---~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
..+..++.. ..+++||||+++.+++.+++.|.. .++.+..+||+|++++|..+++.|++|..+||||||++++||
T Consensus 198 ~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgI 276 (819)
T TIGR01970 198 SRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSL 276 (819)
T ss_pred HHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcc
Confidence 233444433 457899999999999999999987 478899999999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCCCC------------------CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1065 DIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1065 Dip~v~~VI~~d~p~------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
|||+|++|||+++|+ |.++|+||+|||||. ..|.||.|+++++
T Consensus 277 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 277 TIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred cccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 999999999999975 456799999999999 5799999999865
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=397.25 Aligned_cols=316 Identities=22% Similarity=0.297 Sum_probs=233.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
++.+.+.+.....|+++|+.++|.++.|+|++++||||||||+ |++|+..++.. .++++|||+||++|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTreL 133 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHHH
Confidence 4445555544457999999999999999999999999999997 77787765421 37899999999999
Q ss_pred HHHHHHHHHHhcCCCCCeEE---EEEcCCchHHHHH---HHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 818 AQQIEEETNKFGTPLGIRTV---LVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 818 a~Qi~~~~~~~~~~~~i~v~---~~~Gg~~~~~~~~---~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
|.|++..+..++..+++.+. .++||.+..++.. .+.. +++|||+||++|.+.+..- .. ++++|||||||+
T Consensus 134 a~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 134 VIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHh
Confidence 99999999999887776643 4679888765432 3343 4999999999998877641 12 899999999999
Q ss_pred hhc-----------CCChHH-HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec-CChHHHHHHHHhc
Q psy6409 891 MID-----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVERLARSYL 957 (1832)
Q Consensus 891 l~d-----------~gf~~~-i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT-l~~~v~~~~~~~l 957 (1832)
|++ +||.++ +..++..+.................++.... .....++++|||| +|..+. ..++
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~li~~SAT~~p~~~~---~~l~ 286 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP-GKKRGCLIVSSATGRPRGKR---AKLF 286 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh-hccCcEEEEEeCCCCccccH---HHHc
Confidence 998 788874 7777665432111000011111111122211 1112246789999 565443 2345
Q ss_pred CCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEccc---chHHHHHHHHHHcCCcEEEEcCCC
Q psy6409 958 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK---KGADVLAKGLEKLGYNACTLHGGK 1034 (1832)
Q Consensus 958 ~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~---~~~~~l~~~L~~~g~~v~~lhg~~ 1034 (1832)
.++..+.++.......++.+.+..... +...|.+++... +.++||||+++ +.|+.++..|...|+++..+||++
T Consensus 287 r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 287 RELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred ccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 566667777665556667776654433 245566776643 46799999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCCC
Q psy6409 1035 GQEQRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK 1079 (1832)
Q Consensus 1035 ~~~~R~~il~~F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p~ 1079 (1832)
++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|+
T Consensus 364 ~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 PK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 73 6899999999999999 599999999999 89999999874
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=388.30 Aligned_cols=300 Identities=17% Similarity=0.274 Sum_probs=231.1
Q ss_pred HHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCCCCe
Q psy6409 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGIR 835 (1832)
Q Consensus 757 ~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~~i~ 835 (1832)
+.+..+.+++++|++||||||||++|.+|++... ....+++|++|||+||.|++..+. .++...|..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 4455566788999999999999999999998531 123489999999999999999985 556677888
Q ss_pred EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh-hhcCCCh-HHHHHHHHhCCCCCCC
Q psy6409 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFE-PDVQKILEYMPVTNLK 913 (1832)
Q Consensus 836 v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~-l~d~gf~-~~i~~Il~~l~~~~~~ 913 (1832)
+++.+++.+.. ...++|+|+|||+|++++... ..++.+++|||||||. .++.++. ..+..++..+
T Consensus 80 VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l------ 146 (812)
T PRK11664 80 VGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL------ 146 (812)
T ss_pred EEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC------
Confidence 88888876532 235789999999999988764 4799999999999996 3443321 1112222222
Q ss_pred CCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHH----
Q psy6409 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK---- 989 (1832)
Q Consensus 914 ~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~---- 989 (1832)
....|+++||||++.. .+ ..|+.++..+.+.... ..+.+.+..+....+..
T Consensus 147 -------------------r~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~ 201 (812)
T PRK11664 147 -------------------RDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVA 201 (812)
T ss_pred -------------------CccceEEEEecCCCHH--HH-HHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHH
Confidence 2457999999999864 34 4566555555443221 22455544444443432
Q ss_pred -HHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCC
Q psy6409 990 -KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 990 -~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~---~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlD 1065 (1832)
.+..++. ...+.+||||+++.+++.+++.|.. .++.+..+||+|++.+|..++..|++|..+||||||++++|||
T Consensus 202 ~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLt 280 (812)
T PRK11664 202 RATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLT 280 (812)
T ss_pred HHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhccc
Confidence 3334443 3467899999999999999999987 5788999999999999999999999999999999999999999
Q ss_pred CcCcCEEEEcCCCC------------------CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1066 IKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1066 ip~v~~VI~~d~p~------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
||+|++|||+++++ |.++|+||+|||||. ..|.||.|+++++
T Consensus 281 Ip~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 281 IEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 99999999988764 446899999999998 4799999999875
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=402.33 Aligned_cols=353 Identities=19% Similarity=0.221 Sum_probs=260.7
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1414 ILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1414 ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
..+.+++ +|| .|+++|.+++|.++.|+|++++||||||||++++++++... ..+.++|||+||++|
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~------------~~g~~aLVl~PTreL 134 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA------------LKGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH------------hcCCeEEEEECHHHH
Confidence 3456665 799 69999999999999999999999999999997666555321 146789999999999
Q ss_pred HHHHHHHHHHhcCCC--CCeEEEEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh
Q psy6409 1493 AQQIEEETNKFGTPL--GIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1493 a~Qi~~~~~~~~~~~--g~~v~~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l 1566 (1832)
+.|+++.++.++..+ +++++.++|+.+..++.. .+.. .++|||+||++|.+.+... ...++++|||||||+|
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceec
Confidence 999999999988765 467788899998776532 3444 4899999999998876542 2278999999999999
Q ss_pred hc-----------CCChHHHHH-HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcce-EEEEEccCChHHHHHHHHhcC
Q psy6409 1567 ID-----------MGFEPDVQK-ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVERLARSYLR 1633 (1832)
Q Consensus 1567 l~-----------~gf~~~l~~-Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q-~v~~SATl~~~~~~~~~~~l~ 1633 (1832)
++ .||.+++.. ++..++................+...........| ++++|||+++... . ..++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhh
Confidence 87 588888864 33322110000000000111111111111123344 6789999986422 1 23446
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhH---HHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~---a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
.+..+.++.......++.+.+.......+ ..+..++... ...+||||+++.. |+.++..|...|+.+..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 67777777665556677777766654444 5777888765 5689999999875 589999999999999999995
Q ss_pred HHHHHHHHHHhhCCCCcEEEEc----ccccccCCCCC-CCEEEEeCCCC---CHHHHHHHh-------------cccccC
Q psy6409 1711 QEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAK---SIEDYTHRI-------------GRTGRA 1769 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVAT----dvl~~GIDip~-v~~VI~~d~P~---s~~~yiQRi-------------GRaGR~ 1769 (1832)
|..+++.|++|+++||||| ++++||||+|+ |.+|||||+|. +++.|.|-. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8999999999999999999 58999999999 99999999999 888777766 999999
Q ss_pred CCccEEEEEeeCCChhHHHHH
Q psy6409 1770 GKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1770 g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
|..+.++......+..++..+
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHH
Confidence 988877755444444444433
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=366.32 Aligned_cols=343 Identities=22% Similarity=0.233 Sum_probs=253.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+|+|..++|.++.|+ |+.+.||+|||++|++|++... ..|+.++||+||++||.|.++.+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a------------l~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA------------LAGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh------------hcCCeEEEEcCcHHHHHHHHHHH
Confidence 565 79999999999999999 9999999999999999999653 24789999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc-------------------------cccCC
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-------------------------LVLNQ 879 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~-------------------------~~l~~ 879 (1832)
..+...+|+++++++||++.. ......+++|+|+|...| .|.|..+. .....
T Consensus 165 ~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 165 RPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 999999999999999998753 334456899999999877 35553321 12355
Q ss_pred ceeEEEecchhhh-cCC-----------------ChHHHHHHHHhCCC--------------------------------
Q psy6409 880 CTYIVLDEADRMI-DMG-----------------FEPDVQKILEYMPV-------------------------------- 909 (1832)
Q Consensus 880 ~~~lViDEaH~l~-d~g-----------------f~~~i~~Il~~l~~-------------------------------- 909 (1832)
+.+.||||||.++ |.. +...+..+...+..
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 7899999999754 211 11111112111110
Q ss_pred CCCCC------------------------------------------CCchhHHHHHHHHhhcc----------------
Q psy6409 910 TNLKP------------------------------------------DTEDAEDENKLLANYNS---------------- 931 (1832)
Q Consensus 910 ~~~~~------------------------------------------~~~~~~~~~~ll~~~~~---------------- 931 (1832)
..... .....+.+...+..-+.
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00000 00000001111100000
Q ss_pred --ccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC--CCCCEEEEE
Q psy6409 932 --KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFV 1007 (1832)
Q Consensus 932 --~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv 1007 (1832)
.+.+..+.+||||.+.....+...|..++..+..... ......+.++++....|...|.+.+... .+.++||||
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1224578889999998888888888877654433222 1222334455667788898898888653 357899999
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc---CcC-----EEEEcCCCC
Q psy6409 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---DVS-----MVINYDMAK 1079 (1832)
Q Consensus 1008 ~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---~v~-----~VI~~d~p~ 1079 (1832)
+|++.++.++..|...|+++..+||.+. +|+..+..|+.+...|+||||+++||+||+ +|. +||+|++|.
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC
Confidence 9999999999999999999999999865 455555556666667999999999999999 776 999999999
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+...|+||+|||||.|..|.+++|++.+|.
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999998774
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=344.27 Aligned_cols=341 Identities=20% Similarity=0.296 Sum_probs=277.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
..+++.+|+.+...|+..||+++.|+|.-|+.+.+ .|.|++|+++|+||||++.-|+-+..++ ..|.+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l-----------~~g~K 263 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL-----------SGGKK 263 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH-----------hCCCe
Confidence 34678899999999999999999999999999865 7999999999999999998887776543 35789
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH----HHHhcCCceeecCHHHHHHHHHccccccCCceeE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG----FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~----~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~l 883 (1832)
.|||+|..+||+|-+..|+..-.++|+.+..-+|-....... ......++|||+|.+-+ |++.+....+.++..|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhH-HHHHHcCCcccccceE
Confidence 999999999999999999988899999998888865543332 12234589999999999 6655554789999999
Q ss_pred EEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
||||+|.+-|...++-+.-++.++.. -.+..|+|.+|||..+. +.+++.+-.+++..
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~----------------------l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y 399 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRY----------------------LFPGAQFIYLSATVGNP-EELAKKLGAKLVLY 399 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHH----------------------hCCCCeEEEEEeecCCh-HHHHHHhCCeeEee
Confidence 99999988887888888888776632 11358999999999774 44777665444332
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--------CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035 (1832)
Q Consensus 964 ~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--------~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~ 1035 (1832)
. ..|.+.-.|.++.-.+.+|...+..+.+. +..+++|||++|+..|..++..|...|+.+.++|+||+
T Consensus 400 ~----~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~ 475 (830)
T COG1202 400 D----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLP 475 (830)
T ss_pred c----CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCc
Confidence 1 23333334445544577787777776642 45679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE---cCC-CCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN---YDM-AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~---~d~-p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
..+|..+...|.++.+.++|+|.+++.|+|+|+-.+|+. ++. --|+.+|.|+.|||||++.+ |++++++.+.-
T Consensus 476 y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 476 YKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999999999999999999999999999999998665541 222 23899999999999999876 99999998874
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=388.57 Aligned_cols=311 Identities=21% Similarity=0.291 Sum_probs=230.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
+.+.......|+|+|..+++.++.|+|++++||||||||+ |.+|++.++.. .++++|||+||++||.|
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHHHHHH
Confidence 4444433347999999999999999999999999999997 77777655432 36889999999999999
Q ss_pred HHHHHHHhcCCCCCeEE---EEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1496 IEEETNKFGTPLGIRTV---LVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~---~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
++..++.++...++.++ .++|+.+..++.. .+.. +++|||+||++|.+.+..- .. ++++|||||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhh
Confidence 99999999887776544 4678888765432 3333 4899999999998877641 12 899999999999998
Q ss_pred -----------CCChHH-HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcc--eEEEEEcc-CChHHHHHHHHhcC
Q psy6409 1569 -----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR--QTVMFTAT-MPPAVERLARSYLR 1633 (1832)
Q Consensus 1569 -----------~gf~~~-l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--q~v~~SAT-l~~~~~~~~~~~l~ 1633 (1832)
+||.++ +..|+..+...+... .......+...+......+ +++++||| +|..+.. .++.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r 287 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY---RALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR 287 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccc---hHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc
Confidence 678764 677765543211100 0111111111111212233 36779999 5654432 3455
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECch---hHHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK---KGADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~---~~a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
++..+.++.......++.+.+..... +...+.+++... ...+||||+++ +.|+.|+..|...|+++..+||+++
T Consensus 288 ~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 288 ELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred cccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 56666676665556667776654433 245677777654 46799999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHhhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK 1754 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P~ 1754 (1832)
+ .+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3 6899999999999999 599999999999 89999998874
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=336.27 Aligned_cols=320 Identities=25% Similarity=0.306 Sum_probs=237.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
.-+|+.||......++.+ |++++.|||-|||+++++.|..++... .+ ++|+|+||+.|+.|.+..|.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----------~~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----------GG-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----------CC-eEEEecCCchHHHHHHHHHHH
Confidence 347899999999888876 999999999999999999998887652 24 899999999999999999999
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH-HHHHHh
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV-QKILEY 1581 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l-~~Il~~ 1581 (1832)
+..-..-.++.++|...+++... .+....|+|+||+.+.+-+..+.+++.++.+|||||||+..+..-.-.+ ...+.
T Consensus 81 v~~ip~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~- 158 (542)
T COG1111 81 VTGIPEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR- 158 (542)
T ss_pred HhCCChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-
Confidence 87655567889999999876543 4456889999999999999999999999999999999998654322222 21221
Q ss_pred CCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH---HHh---------------------------
Q psy6409 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA---RSY--------------------------- 1631 (1832)
Q Consensus 1582 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~---~~~--------------------------- 1631 (1832)
..+++.++++|||+....+.+. ...
T Consensus 159 -------------------------~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~i 213 (542)
T COG1111 159 -------------------------SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWI 213 (542)
T ss_pred -------------------------hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEE
Confidence 1234567777777643322211 100
Q ss_pred ----------------------c---CCCcEEEEccc-C--------------CCC-c-c-------------eE-----
Q psy6409 1632 ----------------------L---RRPATVYIGSV-G--------------KPT-E-R-------------IE----- 1651 (1832)
Q Consensus 1632 ----------------------l---~~p~~v~i~~~-~--------------~~~-~-~-------------i~----- 1651 (1832)
| .+-..+..... . ... . . +.
T Consensus 214 kV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~el 293 (542)
T COG1111 214 KVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALEL 293 (542)
T ss_pred eccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 0 000 0 0 00
Q ss_pred ---E------------------------------------------EEEEcchhhHHHHHHHHHHh----CCCCcEEEEE
Q psy6409 1652 ---Q------------------------------------------IVYILSEQDKRKKLMEVLNR----GVKKPVIIFV 1682 (1832)
Q Consensus 1652 ---q------------------------------------------~~~~~~~~~k~~~l~~~l~~----~~~~~vIVFv 1682 (1832)
| .......+.|...+.+++.. ....++|||+
T Consensus 294 letqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT 373 (542)
T COG1111 294 LETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFT 373 (542)
T ss_pred HHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0 00000112233444444432 3556899999
Q ss_pred CchhHHHHHHHHHHHcCCcEE-EEc--------CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC
Q psy6409 1683 NQKKGADVLAKGLEKLGYNAC-TLH--------GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~~~v~-~lH--------g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P 1753 (1832)
+.+.+|+.++..|...+..+. .+- .||+|.++.++++.|+.|+++|||||+++++|+|||+|++||.|++-
T Consensus 374 ~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpv 453 (542)
T COG1111 374 EYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPV 453 (542)
T ss_pred hhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCC
Confidence 999999999999999988775 332 47999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1754 KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1754 ~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
.|...++||.|||||. ..|.++++++.+
T Consensus 454 pSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 454 PSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999996 789999999998
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=366.87 Aligned_cols=311 Identities=20% Similarity=0.211 Sum_probs=232.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLA---------FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1427 tpiQ~~ai~~il~g~dvii~ApTGSGKTla---------~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
..+|.++++.+++|+++|++|+||||||.+ |++|.+..+... .....+..++|++||++||.|+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~------~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI------DPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc------ccccCCcEEEEECcHHHHHHHHH
Confidence 358999999999999999999999999987 344444333211 11224568999999999999999
Q ss_pred HHHHHhcCC---CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHH
Q psy6409 1498 EETNKFGTP---LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 1574 (1832)
Q Consensus 1498 ~~~~~~~~~---~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~ 1574 (1832)
..+.+.... .+..+...+||.+.. .........+|+|+|++.. ...++++++|||||||.+...+ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 998775433 356778889998732 2122223679999997621 1257889999999999987664 33
Q ss_pred HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE
Q psy6409 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654 (1832)
Q Consensus 1575 l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~ 1654 (1832)
+..++..+. ...+|+++||||++..++.+ ..++.+|..+.+. +.....+++.+
T Consensus 310 lL~llk~~~------------------------~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~y 362 (675)
T PHA02653 310 IIAVARKHI------------------------DKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVY 362 (675)
T ss_pred HHHHHHHhh------------------------hhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEE
Confidence 433433221 02248999999999888776 5788888887764 33334556554
Q ss_pred EEcc----------hhhHHHHHHHHHHh---CCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHH
Q psy6409 1655 YILS----------EQDKRKKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1655 ~~~~----------~~~k~~~l~~~l~~---~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
.... ...+. .+...+.. ...+.+||||+++..|+.++..|... ++.+..+||+|++. +++++
T Consensus 363 i~~~~~~~~~~~y~~~~k~-~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~ 439 (675)
T PHA02653 363 VKNKYNPKNKRAYIEEEKK-NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILE 439 (675)
T ss_pred eecCcccccchhhhHHHHH-HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHH
Confidence 3221 11222 23333332 23468999999999999999999887 78999999999985 56677
Q ss_pred Hh-hCCCCcEEEEcccccccCCCCCCCEEEEeC---CCC---------CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1720 SL-KGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK---------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1720 ~F-~~g~~~VLVATdvl~~GIDip~v~~VI~~d---~P~---------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.| ++|+.+|||||+++++|||||+|++||++| .|. |.++|+||+|||||. .+|.|+.|+++.+.
T Consensus 440 ~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 440 KVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred HHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 77 799999999999999999999999999998 665 889999999999999 78999999998764
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=340.41 Aligned_cols=340 Identities=20% Similarity=0.296 Sum_probs=276.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG-LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~i-l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..+++.+|+.+...|+..|+..+.|+|.-|+.+. ++|.|++++++|+||||++..++=+..+.. .|.+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----------~g~K 263 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----------GGKK 263 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----------CCCe
Confidence 3567889999999999999999999999999875 589999999999999999999987765533 5888
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH----HHhhcCCcEEEeCHHHHHHHHHccccccCCceeE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG----FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~----~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~ll 1558 (1832)
.|||+|..+||+|-+..|+.--.++|+++.+-+|-.-..... ......+||||+|.+-+..+++.+ -.+.+++.|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 999999999999999999987788999998888765544332 122335899999999999988887 678999999
Q ss_pred EEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v 1638 (1832)
||||+|.+-+...++-+.-++.++.. ..+..|++.+|||..+.. .++..+.-+++.+
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~----------------------l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y 399 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRY----------------------LFPGAQFIYLSATVGNPE-ELAKKLGAKLVLY 399 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHH----------------------hCCCCeEEEEEeecCChH-HHHHHhCCeeEee
Confidence 99999988777777777777665532 224579999999998764 4555544443332
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHh--------CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1639 ~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--------~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
..+|.+.-.|.+....+..|...+..+++. ...+++|||++|++.|..|+..|...|+.+..||+||+
T Consensus 400 ----~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~ 475 (830)
T COG1202 400 ----DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLP 475 (830)
T ss_pred ----cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCc
Confidence 234444445566666677887777776642 25679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE---eCCCC-CHHHHHHHhcccccCC--CccEEEEEeeCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN---YDMAK-SIEDYTHRIGRTGRAG--KEGLAVSFCTKD 1782 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~---~d~P~-s~~~yiQRiGRaGR~g--~~G~ai~~~~~~ 1782 (1832)
..+|..+...|.++++.++|+|.+++.|||+|+-++|+- ++.-+ |+.+|.||.|||||.+ ..|++++++.+.
T Consensus 476 y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 476 YKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999999999999999999999999997665542 22222 7899999999999987 459999999876
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=330.77 Aligned_cols=322 Identities=24% Similarity=0.280 Sum_probs=238.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+|+.||......++.+ |++++.|||-|||+++++.+..++.. ..+ ++|+|+||+.|+.|.+..|.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~----------~~~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW----------FGG-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh----------cCC-eEEEecCCchHHHHHHHHHH
Confidence 4567889999998888876 89999999999999999999887743 234 89999999999999999999
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-ChHHHHHHHH
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILE 905 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g-f~~~i~~Il~ 905 (1832)
++..-..-.++.++|.....+.... +....|+|+||+.+.+-|..+.+++.++.+|||||||+-...- +-......+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~-w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREEL-WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHH-HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 9976656678899998887665444 4478999999999999999999999999999999999865422 1111221221
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH---HhcCCCcEE-------------------
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR---SYLRRPATV------------------- 963 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~---~~l~~p~~v------------------- 963 (1832)
..+...++++|||.....+.+.. .+.-..+.+
T Consensus 159 --------------------------~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ 212 (542)
T COG1111 159 --------------------------SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEW 212 (542)
T ss_pred --------------------------hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEE
Confidence 22446789999996544433211 111000000
Q ss_pred --------------------------------EEcccCCC-------C-------cc-----------------eEE---
Q psy6409 964 --------------------------------YIGSVGKP-------T-------ER-----------------IEQ--- 977 (1832)
Q Consensus 964 --------------------------------~~~~~~~~-------~-------~~-----------------i~q--- 977 (1832)
..+..... . .. +.+
T Consensus 213 ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~e 292 (542)
T COG1111 213 IKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALE 292 (542)
T ss_pred EeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 00 000
Q ss_pred -----------------------------------------------EEEEcchhhHHHHHHHHHHc----CCCCCEEEE
Q psy6409 978 -----------------------------------------------IVYILSEQDKRKKLMEVLNR----GVKKPVIIF 1006 (1832)
Q Consensus 978 -----------------------------------------------~~~~~~~~~k~~~L~~~l~~----~~~~~vIVF 1006 (1832)
.......+.|+..+.+++.. ..+.++|||
T Consensus 293 lletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVF 372 (542)
T COG1111 293 LLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVF 372 (542)
T ss_pred HHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEE
Confidence 00000112233444444432 345689999
Q ss_pred EcccchHHHHHHHHHHcCCcEE-EEc--------CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC
Q psy6409 1007 VNQKKGADVLAKGLEKLGYNAC-TLH--------GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077 (1832)
Q Consensus 1007 v~s~~~~~~l~~~L~~~g~~v~-~lh--------g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~ 1077 (1832)
++.+.+|+.++.+|...+..+. .+- .||+|.++.++++.|+.|.++|||||+++++|||||+|++||.|++
T Consensus 373 T~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEp 452 (542)
T COG1111 373 TEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEP 452 (542)
T ss_pred ehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecC
Confidence 9999999999999999988775 333 4799999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
..|...++||.|||||. +.|.+++|++.++
T Consensus 453 vpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 453 VPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 99999999999999995 7799999999984
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=356.31 Aligned_cols=343 Identities=22% Similarity=0.230 Sum_probs=253.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++.... .|+.|+||+||++||.|.+.++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------------~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------------AGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------------cCCeEEEEcCcHHHHHHHHHHH
Confidence 576 89999999999999999 99999999999999999996542 4788999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc-------------------------cccCC
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-------------------------LVLNQ 1554 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~-------------------------~~l~~ 1554 (1832)
..++..+|+++++++|+.+... .....+++|+|+|...| .+.|+.+. .....
T Consensus 165 ~~l~~~lGlsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 165 RPLYEALGLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHHHhhcCCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 9999999999999999987543 33456899999999887 45655432 12356
Q ss_pred ceeEEEccchhhh-cCC-----------------ChHHHHHHHHhCCCC-----------------------------CC
Q psy6409 1555 CTYIVLDEADRMI-DMG-----------------FEPDVQKILEYMPVT-----------------------------NL 1587 (1832)
Q Consensus 1555 v~llViDEaH~ll-~~g-----------------f~~~l~~Il~~l~~~-----------------------------~~ 1587 (1832)
+.+.||||||.++ |.. +......+...+... ..
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 7899999999643 110 111111222222100 00
Q ss_pred CCCCc---------------------------------------------hhhhHHHHHh---hhc--------------
Q psy6409 1588 KPDTE---------------------------------------------DAEDENKLLA---NYN-------------- 1605 (1832)
Q Consensus 1588 ~~~~~---------------------------------------------~~~~~~~l~~---~~~-------------- 1605 (1832)
..... +....-+.+. .+.
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00000 0000000000 000
Q ss_pred -cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEE
Q psy6409 1606 -SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFV 1682 (1832)
Q Consensus 1606 -~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv 1682 (1832)
.-..+..+.+||||.+....++...|..++..+...... .....+.+..+....|...|...+... ...|+||||
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 011234667999999998888888888776554332221 122334455667788888998888653 357899999
Q ss_pred CchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---CCC-----EEEEeCCCC
Q psy6409 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---DVS-----MVINYDMAK 1754 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---~v~-----~VI~~d~P~ 1754 (1832)
+|+..++.++..|...|+++..+||.+.+ |+..+..|+.+...|+|||++++||+||+ +|. +||+|++|.
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC
Confidence 99999999999999999999999998654 45555556666667999999999999999 676 999999999
Q ss_pred CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1755 s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|...|+||+|||||.|+.|.+++|++..|.
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999998764
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=346.13 Aligned_cols=331 Identities=17% Similarity=0.184 Sum_probs=260.3
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCe
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~ 835 (1832)
.+.+.++..++-+||.|.||||||. .||.+.+ .......|.++-|..|.|..|+.++.++.+ .+|++
T Consensus 271 dell~av~e~QVLiI~GeTGSGKTT--QiPQyL~--------EaGytk~gk~IgcTQPRRVAAmSVAaRVA~---EMgvk 337 (902)
T KOG0923|consen 271 DELLKAVKEHQVLIIVGETGSGKTT--QIPQYLY--------EAGYTKGGKKIGCTQPRRVAAMSVAARVAE---EMGVK 337 (902)
T ss_pred HHHHHHHHhCcEEEEEcCCCCCccc--cccHHHH--------hcccccCCceEeecCcchHHHHHHHHHHHH---HhCcc
Confidence 3344444445559999999999999 6776533 122344566799999999999998776543 23444
Q ss_pred EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915 (1832)
Q Consensus 836 v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~ 915 (1832)
.+--+|.....+. .....+.|-++|.|+|+..+...+ +|..+++||||||| .+
T Consensus 338 LG~eVGYsIRFEd--cTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAH------------------------ER 390 (902)
T KOG0923|consen 338 LGHEVGYSIRFED--CTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAH------------------------ER 390 (902)
T ss_pred cccccceEEEecc--ccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhh------------------------hh
Confidence 4444444333332 223467899999999998887766 79999999999999 56
Q ss_pred CchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH
Q psy6409 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995 (1832)
Q Consensus 916 ~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l 995 (1832)
+.+++.+++++..+...++...+++.|||| +.++|..+|-..|++..++........++......+-+..+..+++++
T Consensus 391 TL~TDILfgLvKDIar~RpdLKllIsSAT~--DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH 468 (902)
T KOG0923|consen 391 TLHTDILFGLVKDIARFRPDLKLLISSATM--DAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIH 468 (902)
T ss_pred hhhhhHHHHHHHHHHhhCCcceEEeecccc--CHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeE
Confidence 788899999999999999999999999999 478899989899999988888776666666555556667777788888
Q ss_pred HcCCCCCEEEEEcccchHHHHHHHHHHc---------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 996 NRGVKKPVIIFVNQKKGADVLAKGLEKL---------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 996 ~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
...+.+.+|||....+..+.+.+.|... .+-++++|+.+|++.+..||+...+|..+|++||++|+..|.|
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee
Confidence 8888899999999999988888777543 3568999999999999999999999999999999999999999
Q ss_pred cCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCccccc
Q psy6409 1067 KDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRA 1128 (1832)
Q Consensus 1067 p~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~ 1128 (1832)
++|.+||+.++ |.|-++..||.|||||.|. |+|+.+|+.-. +.+.|+.+-..++.-.+.
T Consensus 549 dgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP-GKCfRLYt~~a--Y~~eLE~~t~PEIqRtnL 625 (902)
T KOG0923|consen 549 DGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP-GKCFRLYTAWA--YEHELEEMTVPEIQRTNL 625 (902)
T ss_pred cCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC-CceEEeechhh--hhhhhccCCCcceeeccc
Confidence 99999998776 6688999999999999995 99999999643 344455544445444444
Q ss_pred ccc
Q psy6409 1129 GKE 1131 (1832)
Q Consensus 1129 ~~~ 1131 (1832)
+|+
T Consensus 626 ~nv 628 (902)
T KOG0923|consen 626 GNV 628 (902)
T ss_pred hhH
Confidence 443
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=358.93 Aligned_cols=385 Identities=20% Similarity=0.261 Sum_probs=299.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
..+|.+-..++. |+..++++|..+.++++.+ .|+++|||||+|||.++++-||+.+..... ..+.-.....+++|+
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r-~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLR-EDGSVNLAPFKIVYI 370 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccc-cccceecccceEEEE
Confidence 356666666664 6667999999999999977 689999999999999999999988765332 111122345589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc--ccccCCceeEEEccch
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~--~~~l~~v~llViDEaH 1564 (1832)
+|+++|++.+...|.+....+|++|..++|+.....+... +..|+|+||++|.-+-++. ....+-++++|+||+|
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qie---eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE---ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhh---cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999886655444 6899999999995544442 2345678999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC-CCcEEEEccc
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSV 1643 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~-~p~~v~i~~~ 1643 (1832)
|+....++.++.|+.++. ..........+++++|||+|+... ....... .+..+++++.
T Consensus 448 -LLhDdRGpvLESIVaRt~------------------r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~s 507 (1674)
T KOG0951|consen 448 -LLHDDRGPVLESIVARTF------------------RRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSS 507 (1674)
T ss_pred -hcccccchHHHHHHHHHH------------------HHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcc
Confidence 777788999999987653 122334466889999999998754 2222222 3444555666
Q ss_pred CCCCcceEEEEEEcch--h-----hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH-------------------
Q psy6409 1644 GKPTERIEQIVYILSE--Q-----DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK------------------- 1697 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~--~-----~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~------------------- 1697 (1832)
-+|.+.-+|++-+... . ++-..+-.++.+....+|||||.||+.+-..|+.++.
T Consensus 508 yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ 587 (1674)
T KOG0951|consen 508 YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASR 587 (1674)
T ss_pred cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchh
Confidence 6666554444433211 1 1223344556666779999999999999888887762
Q ss_pred ------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eCC---
Q psy6409 1698 ------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDM--- 1752 (1832)
Q Consensus 1698 ------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d~--- 1752 (1832)
+.++.++||+||+..+|..+++.|+.|.++|||+|.+++||||+|+..++|. ||+
T Consensus 588 eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg 667 (1674)
T KOG0951|consen 588 EILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKG 667 (1674)
T ss_pred hhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccC
Confidence 2578999999999999999999999999999999999999999999888885 554
Q ss_pred ---CCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCccc
Q psy6409 1753 ---AKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1753 ---P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~ 1820 (1832)
+.++.+.+||.|||||.+ ..|..++.-..++...|..+.+.-.+.+ |..-+.|.+..||++++| |.
T Consensus 668 ~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpie-sq~~~rl~d~lnaeiv~G-v~ 738 (1674)
T KOG0951|consen 668 RWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIE-SQFVSRLADCLNAEIVLG-VR 738 (1674)
T ss_pred ccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCCh-HHHHHHhhhhhhhhhhcc-hh
Confidence 458899999999999975 4577877777778888888887777886 888999999999999999 54
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=329.54 Aligned_cols=292 Identities=29% Similarity=0.529 Sum_probs=235.3
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhc---CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCc
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFG---TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~---~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v 1555 (1832)
+.|.+||+-|++||++|.+..+++|- ....++...+.||.....|...+..+.+|+|+||+++.+.+..+.+.+.+|
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 34589999999999999999766664 333567778999999999999999999999999999999999999999999
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHHHHHHhcCC
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRR 1634 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~~~~~~l~~ 1634 (1832)
.++|+||||.++..++.+-+..+...+|.. .+.....|.+++|||+.. .+..+....+.-
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~-------------------tsdg~rlq~~vCsatlh~feVkk~~ervmhf 425 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHM-------------------TSDGFRLQSPVCSATLHIFEVKKVGERVMHF 425 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhh-------------------hcCCcccccceeeeEEeEEEeeehhhhhccC
Confidence 999999999999999998888887777632 233456799999999853 334444556666
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchh------------------------------hHH---------HHHHHHHHhCCC
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILSEQ------------------------------DKR---------KKLMEVLNRGVK 1675 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~~~------------------------------~k~---------~~l~~~l~~~~~ 1675 (1832)
|..+.....+.....+.+.+..+... ... ++-+..+..+.-
T Consensus 426 ptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~m 505 (725)
T KOG0349|consen 426 PTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAM 505 (725)
T ss_pred ceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhcc
Confidence 66666655555555544443322110 000 111222334456
Q ss_pred CcEEEEECchhHHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC
Q psy6409 1676 KPVIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752 (1832)
Q Consensus 1676 ~~vIVFv~s~~~a~~l~~~L~~~~---~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~ 1752 (1832)
.++||||.++..|+.|-.+|+..| +++.++||+..+.+|..-++.|+.+.++.|||||+++||+||..+-.+||.-+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl 585 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL 585 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec
Confidence 689999999999999999998764 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHH
Q psy6409 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789 (1832)
Q Consensus 1753 P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~ 1789 (1832)
|.+-.+|+|||||+||+..-|.|++++.......++.
T Consensus 586 pd~k~nyvhrigrvgraermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 586 PDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred CcccchhhhhhhccchhhhcceeEEEeeccchheeeh
Confidence 9999999999999999999999999987665555544
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=358.76 Aligned_cols=343 Identities=21% Similarity=0.281 Sum_probs=254.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .|+.++|++||++||.|.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------------~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------------EGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------------cCCCeEEEeCCHHHHHHHHHHH
Confidence 576 89999999999999887 99999999999999999985432 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|+++++++||.+..++.. ...+++|+||||++| .|+|.... ..+..+.++||||||.|+ |..
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 9999999999999999998433322 334799999999999 56654432 367889999999999865 211
Q ss_pred -------------ChHHHHHHHHhCCCC-----------------------------CCCCC------------------
Q psy6409 896 -------------FEPDVQKILEYMPVT-----------------------------NLKPD------------------ 915 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~-----------------------------~~~~~------------------ 915 (1832)
+...+..++..+... ++...
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~ 298 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVL 298 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 111122222222100 00000
Q ss_pred ---------------------------CchhHHHHHHHHhhc------------------cccccceEEEEEecCChHHH
Q psy6409 916 ---------------------------TEDAEDENKLLANYN------------------SKKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 916 ---------------------------~~~~~~~~~ll~~~~------------------~~~~~~q~v~~SATl~~~v~ 950 (1832)
....+.+...+..-+ -.+.+..+.++|.|......
T Consensus 299 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~ 378 (790)
T PRK09200 299 FKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK 378 (790)
T ss_pred hhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH
Confidence 000000111110000 01223468889999866556
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
.|...|-- ++ + .-+...+...... -..++....|...+.+.+.. ..+.|+||||+|++.++.++..|...|+++
T Consensus 379 e~~~~Y~l-~v-~-~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 379 EFFEVYNM-EV-V-QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred HHHHHhCC-cE-E-ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 66555532 22 2 2233333333322 23445677888888888765 367799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC---cCcC-----EEEEcCCCCCHhHHHHHhcccccCCCCcE
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI---KDVS-----MVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi---p~v~-----~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ 1099 (1832)
..+||.+.+.++..+...+..| .|+||||+++||+|| |+|. +||+|++|.+...|+||+|||||.|..|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 9999999999998888888777 699999999999999 7998 99999999999999999999999999999
Q ss_pred EEEEecCCCc
Q psy6409 1100 AVSFCTKDDS 1109 (1832)
Q Consensus 1100 ai~~~~~~d~ 1109 (1832)
+++|++.+|.
T Consensus 534 s~~~is~eD~ 543 (790)
T PRK09200 534 SQFFISLEDD 543 (790)
T ss_pred EEEEEcchHH
Confidence 9999998763
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=364.97 Aligned_cols=302 Identities=18% Similarity=0.263 Sum_probs=233.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCC
Q psy6409 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 1509 (1832)
Q Consensus 1431 ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~ 1509 (1832)
.+.+..+..+.++|++|+||||||.+|.+|++.... .+.+++|++|+|++|.|++..+. .++...|.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 345556667889999999999999999999986531 24589999999999999999885 55556676
Q ss_pred eEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch-hhhcCCChHHH-HHHHHhCCCCCC
Q psy6409 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPDV-QKILEYMPVTNL 1587 (1832)
Q Consensus 1510 ~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH-~ll~~gf~~~l-~~Il~~l~~~~~ 1587 (1832)
.|...+++.. ....+.+|+|+|||+|.+.+.+. ..++++++||||||| ++++.++.-.+ ..+...++
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr---- 144 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR---- 144 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC----
Confidence 6666555433 12346789999999999998764 579999999999999 57776654332 23333332
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHH----
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR---- 1663 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~---- 1663 (1832)
...|+++||||++... ...|+.++..+.+.... ..+++.+.......+.
T Consensus 145 ---------------------~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 145 ---------------------EDLKILAMSATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred ---------------------CCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHH
Confidence 3478999999998754 34567665555443322 2345555444333332
Q ss_pred -HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1664 -KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1664 -~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~---~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
..+..++.. ..+.+||||++...++.++..|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++||
T Consensus 198 ~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgI 276 (819)
T TIGR01970 198 SRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSL 276 (819)
T ss_pred HHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcc
Confidence 233444433 457899999999999999999987 478899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------------------CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1740 DIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~------------------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||+|++||++++|. |-.+|+||+|||||. ..|.|+.|+++.+.
T Consensus 277 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 277 TIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred cccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 999999999999875 345799999999998 79999999997654
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=354.71 Aligned_cols=307 Identities=18% Similarity=0.196 Sum_probs=221.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
...|+++|.+|++.++.+++.+++||||||||+++...+...+ . ....++|||+||++|+.|+.+.+.+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~----------~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-E----------NYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-h----------cCCCeEEEEECcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998755332212 1 1234899999999999999999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++......+..+.||.... .+.+|+|+||+++.+... ..+.++++||+||||++... .+..++..+
T Consensus 181 ~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~ 246 (501)
T PHA02558 181 YRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKL 246 (501)
T ss_pred hccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhh
Confidence 8754445566677775432 357999999999975432 24688999999999998753 345555544
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH--HHhcCCCcEEEEccc-----------------
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA--RSYLRRPATVYIGSV----------------- 968 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~--~~~l~~p~~v~~~~~----------------- 968 (1832)
+ ...++++||||++....... ..++. |....+...
T Consensus 247 ~-------------------------~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~ 300 (501)
T PHA02558 247 D-------------------------NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIF 300 (501)
T ss_pred h-------------------------ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEe
Confidence 2 23579999999865322111 11111 211111100
Q ss_pred -CCCCc---c-----eEEEE-EEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 969 -GKPTE---R-----IEQIV-YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 969 -~~~~~---~-----i~q~~-~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
..+.. . +.+.+ .......+...+..+... ..+.++||||++.++++.+++.|...|.++..+||++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~ 380 (501)
T PHA02558 301 LRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDT 380 (501)
T ss_pred ccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 00000 0 00000 011112233333333322 245679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEec-ccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1037 EQRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaT-dv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
++|..+++.|++|...||||| +++++|+|+|++++||++.++.|...|+||+||++|.+..+...+++.
T Consensus 381 ~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 381 EDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 999999999999999999999 899999999999999999999999999999999999876554444443
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=347.01 Aligned_cols=300 Identities=19% Similarity=0.175 Sum_probs=209.9
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. ..++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHH
Confidence 58999999999999999999976522 2466899999999999999999998732 2344455543311
Q ss_pred -----------HHH-HHH------hcCCceeecCHHHHHHHHHccc----cccC--CceeEEEecchhhhcCCChHHHHH
Q psy6409 847 -----------EQG-FRL------RLGCEIVIATPGRLIDVLENRY----LVLN--QCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 847 -----------~~~-~~l------~~~~~IlV~TP~rL~d~l~~~~----~~l~--~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
... ... ....+|+|+||+.++..+.... ..+. ..++|||||||.+.+++++. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 000 000 1136899999999988776521 1111 23789999999998765544 444
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 982 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~ 982 (1832)
++..++ ....|+++||||+|..+..++..+...+....+.... ......+.+..+
T Consensus 147 ~l~~l~------------------------~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 201 (358)
T TIGR01587 147 VLEVLK------------------------DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-ERRFERHRFIKI 201 (358)
T ss_pred HHHHHH------------------------HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-ccccccccceee
Confidence 444331 1247899999999987777766554332111111000 000111222111
Q ss_pred --chhhHHHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHcCC--cEEEEcCCCCHHHHHH----HHHHHhCCCCcE
Q psy6409 983 --SEQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQREL----ALNSLKGGSKDI 1053 (1832)
Q Consensus 983 --~~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~g~--~v~~lhg~~~~~~R~~----il~~F~~G~~~V 1053 (1832)
....+...+..++.. ..+.++||||++++.|+.++..|...+. .+..+||++++.+|.. +++.|++|..+|
T Consensus 202 ~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~i 281 (358)
T TIGR01587 202 ESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFV 281 (358)
T ss_pred ccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeE
Confidence 112334444444443 2467899999999999999999988776 4999999999999976 489999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC----cEEEEEecCCC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE----GLAVSFCTKDD 1108 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~----G~ai~~~~~~d 1108 (1832)
||||+++++||||| +++||++..| +.+|+||+||+||.|+. |..++|....+
T Consensus 282 lvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 282 IVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999999996 8899998776 78999999999998864 36666666544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=351.30 Aligned_cols=306 Identities=19% Similarity=0.208 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
...|+|+|.+|++.++.+++.+++||||||||+++...+...+ . ....++|||+||++|+.|+.+.+.+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~----------~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-E----------NYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-h----------cCCCeEEEEECcHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999998754332222 1 1234899999999999999999999
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
++......+..+.||.... .+++|+|+||+++..... ..+.++++||+||||++... .+..++..+
T Consensus 181 ~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~ 246 (501)
T PHA02558 181 YRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKL 246 (501)
T ss_pred hccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhh
Confidence 8754444555666665432 257899999999875442 24678999999999998753 455565554
Q ss_pred CCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH-HhcCCCcEEEEccc------------------
Q psy6409 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATVYIGSV------------------ 1643 (1832)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~-~~l~~p~~v~i~~~------------------ 1643 (1832)
+ ..+++++||||++........ ..+..|....+...
T Consensus 247 ~-------------------------~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~ 301 (501)
T PHA02558 247 D-------------------------NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFL 301 (501)
T ss_pred h-------------------------ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEec
Confidence 3 235789999999754321111 11111221111100
Q ss_pred CCCCc---ce-----EEEE-EEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 1644 GKPTE---RI-----EQIV-YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712 (1832)
Q Consensus 1644 ~~~~~---~i-----~q~~-~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~ 1712 (1832)
..+.. .+ ...+ .......+...+..++.. ..+.++||||+++++++.|++.|...+.++..+||++++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~ 381 (501)
T PHA02558 302 RYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTE 381 (501)
T ss_pred cCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 00000 00 0000 001112223333333322 2456899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEc-ccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCcc-EEEEE
Q psy6409 1713 QRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG-LAVSF 1778 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVAT-dvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G-~ai~~ 1778 (1832)
+|..+++.|++|+..||||| +++++|+|+|++++||++++|.|...|+||+||++|.+..+ .|++|
T Consensus 382 eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 382 DRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred HHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999998 89999999999999999999999999999999999976543 33333
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=363.23 Aligned_cols=352 Identities=23% Similarity=0.292 Sum_probs=278.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
..+..++.+.|+..|+++|.+|+..+.+|+|+||++|||||||.+|++||+.++...+ ..++|||.||++
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtnA 126 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTNA 126 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechhh
Confidence 3567888889999999999999999999999999999999999999999999886532 338999999999
Q ss_pred HHHHHHHHHHHhcCCCC--CeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc----cccCCceeEEEecchh
Q psy6409 817 LAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY----LVLNQCTYIVLDEADR 890 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~--i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~----~~l~~~~~lViDEaH~ 890 (1832)
||+.+.+.|.++...++ +.+..+.|+....+........++||++||.||..++.+.. ..+.+++|||+||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH- 205 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH- 205 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce-
Confidence 99999999999988877 88888899988877767778899999999999977665543 367789999999999
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCC
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 970 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~ 970 (1832)
.+...|+..+..+++++. ..........|+|+.|||+.+..+ ++..+...+....+.....
T Consensus 206 tYrGv~GS~vA~llRRL~------------------~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~ 266 (851)
T COG1205 206 TYRGVQGSEVALLLRRLL------------------RRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGS 266 (851)
T ss_pred eccccchhHHHHHHHHHH------------------HHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCC
Confidence 667779999999988772 222333467899999999987544 6777777666554443333
Q ss_pred CCcceEEEEEEcc---------hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHH----HHHHHcC----CcEEEEc
Q psy6409 971 PTERIEQIVYILS---------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLA----KGLEKLG----YNACTLH 1031 (1832)
Q Consensus 971 ~~~~i~q~~~~~~---------~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~----~~L~~~g----~~v~~lh 1031 (1832)
+....... .... -.++...+..+... ..+-++|+|+.++..++.++ ..+...+ ..+..++
T Consensus 267 ~~~~~~~~-~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~ 345 (851)
T COG1205 267 PRGLRYFV-RREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYR 345 (851)
T ss_pred CCCceEEE-EeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeecc
Confidence 33322222 2211 11233333333322 25668999999999999987 4454445 6789999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCC--C
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD--D 1108 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~--d 1108 (1832)
|++...+|..++..|++|++.++++|++++-||||-+++.||.++.|. +..++.||+|||||.++.+..+.++..+ |
T Consensus 346 ~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d 425 (851)
T COG1205 346 AGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLD 425 (851)
T ss_pred ccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccc
Confidence 999999999999999999999999999999999999999999999999 9999999999999999777777666633 3
Q ss_pred chHHHHHHHHH
Q psy6409 1109 SHLFYDLKQMM 1119 (1832)
Q Consensus 1109 ~~~~~~l~~~l 1119 (1832)
..++.....++
T Consensus 426 ~yy~~~p~~~~ 436 (851)
T COG1205 426 SYYLRHPEELL 436 (851)
T ss_pred hhhhhCcHhhh
Confidence 34444444443
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=350.25 Aligned_cols=341 Identities=23% Similarity=0.283 Sum_probs=255.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|..+++.+..|+ |+.+.||+|||++|.+|++.... .|+.|+|++||++||.|.+.++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------------~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------------EGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------------cCCCeEEEeCCHHHHHHHHHHH
Confidence 577 89999999999998887 99999999999999999985443 3788999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcc-hHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLS-REEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~-~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~g-- 1570 (1832)
..+...+|+++++++|+.+ ..... ...+++|+|+||+++ .++|..+. ..+..+.++||||||.|+=..
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 9999999999999999988 44332 234699999999999 56665433 356889999999999864110
Q ss_pred --------------ChHHHHHHHHhCCCC-----------------------------CCCCCCch----hhhHHHHHhh
Q psy6409 1571 --------------FEPDVQKILEYMPVT-----------------------------NLKPDTED----AEDENKLLAN 1603 (1832)
Q Consensus 1571 --------------f~~~l~~Il~~l~~~-----------------------------~~~~~~~~----~~~~~~l~~~ 1603 (1832)
+...+..++..+... +. ..... ......+.+.
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l-~~~~~~~~~~~i~~Al~A~ 296 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNL-YSLEHQVLYRHIILALRAH 296 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccc-cChhhhHHHHHHHHHHHHH
Confidence 111222222222110 00 00000 0000000000
Q ss_pred ---------------------------------------------h---------------ccccCcceEEEEEccCChH
Q psy6409 1604 ---------------------------------------------Y---------------NSKKKYRQTVMFTATMPPA 1623 (1832)
Q Consensus 1604 ---------------------------------------------~---------------~~~~~~~q~v~~SATl~~~ 1623 (1832)
+ +.-..+..+.++|.|....
T Consensus 297 ~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~ 376 (790)
T PRK09200 297 VLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTE 376 (790)
T ss_pred HHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHH
Confidence 0 0001223577899998766
Q ss_pred HHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCC
Q psy6409 1624 VERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGY 1700 (1832)
Q Consensus 1624 ~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~ 1700 (1832)
-.++...|--+ .+ .-+...|...... -........|...++..+.. ....|+||||+|+..++.++..|...|+
T Consensus 377 ~~e~~~~Y~l~--v~-~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi 453 (790)
T PRK09200 377 EKEFFEVYNME--VV-QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGI 453 (790)
T ss_pred HHHHHHHhCCc--EE-ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 66666655332 22 2244444433322 23445667888888888865 3678999999999999999999999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCC---CCCC-----EEEEeCCCCCHHHHHHHhcccccCCCc
Q psy6409 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI---KDVS-----MVINYDMAKSIEDYTHRIGRTGRAGKE 1772 (1832)
Q Consensus 1701 ~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDi---p~v~-----~VI~~d~P~s~~~yiQRiGRaGR~g~~ 1772 (1832)
++..+||.+.+.++..+...++.| +|+|||++++||+|| |+|. +||+|++|.|...|+||+|||||.|++
T Consensus 454 ~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~ 531 (790)
T PRK09200 454 PHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDP 531 (790)
T ss_pred CEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCC
Confidence 999999999999998888888777 799999999999999 7998 999999999999999999999999999
Q ss_pred cEEEEEeeCCCh
Q psy6409 1773 GLAVSFCTKDDS 1784 (1832)
Q Consensus 1773 G~ai~~~~~~d~ 1784 (1832)
|.+++|++..|.
T Consensus 532 G~s~~~is~eD~ 543 (790)
T PRK09200 532 GSSQFFISLEDD 543 (790)
T ss_pred eeEEEEEcchHH
Confidence 999999998764
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=340.54 Aligned_cols=299 Identities=20% Similarity=0.203 Sum_probs=209.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchH
Q psy6409 1442 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~ 1521 (1832)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++. ..++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHH
Confidence 58999999999999999999976532 2467899999999999999999999743 2344445443311
Q ss_pred -----------HHHH-Hh------hcCCcEEEeCHHHHHHHHHccc----cccC--CceeEEEccchhhhcCCChHHHHH
Q psy6409 1522 -----------EQGF-RL------RLGCEIVIATPGRLIDVLENRY----LVLN--QCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1522 -----------~~~~-~l------~~~~~IiVaTP~rl~~~l~~~~----~~l~--~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
.... .. ....+|+|+||+++...+..+. ..+. ..++|||||||.+.+.++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 0000 00 1136799999999988776521 1111 23799999999998765443 444
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcce-EEEEEE
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI-EQIVYI 1656 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i-~q~~~~ 1656 (1832)
++..++ ....|++++|||+|..+..+...+...+....... .....+ .+.+..
T Consensus 147 ~l~~l~------------------------~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 200 (358)
T TIGR01587 147 VLEVLK------------------------DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL--KEERRFERHRFIK 200 (358)
T ss_pred HHHHHH------------------------HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC--cccccccccccee
Confidence 444332 12468999999999877766655543321111110 000001 122211
Q ss_pred c--chhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHH----HHHHhhCCCCc
Q psy6409 1657 L--SEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQREL----ALNSLKGGSKD 1727 (1832)
Q Consensus 1657 ~--~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~--~v~~lHg~ls~~~R~~----il~~F~~g~~~ 1727 (1832)
+ ....+...+..++... ..+++||||+++++|+.++..|...+. .+..+||++++.+|.. +++.|++|+.+
T Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ 280 (358)
T TIGR01587 201 IESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF 280 (358)
T ss_pred eccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe
Confidence 1 1123444455555432 467999999999999999999988766 4999999999999976 48999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc----cEEEEEeeCCC
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE----GLAVSFCTKDD 1783 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~----G~ai~~~~~~d 1783 (1832)
|||||+++++||||| +++||++..| +++|+||+||+||.|+. |..++|....+
T Consensus 281 ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 281 VIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999999996 8999999877 89999999999998754 36676766544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=332.81 Aligned_cols=319 Identities=18% Similarity=0.222 Sum_probs=252.6
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 744 ~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
+...|...+..+.+.+..+..++-|||+++||||||. .||-+.+ . ........+.|..|.|..|+.+++
T Consensus 350 eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~--e-------dGY~~~GmIGcTQPRRvAAiSVAk 418 (1042)
T KOG0924|consen 350 EQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLY--E-------DGYADNGMIGCTQPRRVAAISVAK 418 (1042)
T ss_pred HHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHH--h-------cccccCCeeeecCchHHHHHHHHH
Confidence 3456777788899999999999999999999999999 4444322 1 223445689999999999999887
Q ss_pred HHH-HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHH
Q psy6409 824 ETN-KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 824 ~~~-~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
.+. +++..+|..|++-+--.+.+ ...+.|-++|.|.|+....... .|..+++|||||||
T Consensus 419 rVa~EM~~~lG~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAH------------- 478 (1042)
T KOG0924|consen 419 RVAEEMGVTLGDTVGYSIRFEDVT------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAH------------- 478 (1042)
T ss_pred HHHHHhCCccccccceEEEeeecC------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhh-------------
Confidence 765 44444555444443332222 2367899999999987665443 68899999999999
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 982 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~ 982 (1832)
.++.+++.++++++.....+.+..+|.+||||. .++|+.+|.+.|.+...|................
T Consensus 479 -----------ERslNtDilfGllk~~larRrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eD 545 (1042)
T KOG0924|consen 479 -----------ERSLNTDILFGLLKKVLARRRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVED 545 (1042)
T ss_pred -----------hcccchHHHHHHHHHHHHhhccceEEEeecccc--HHHHHHHhCCCceeeecCCccceEEEeccCchHH
Confidence 556788999999999999999999999999994 7889998888898888777665443322222222
Q ss_pred chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc----------CCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 983 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL----------GYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 983 ~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
+-+..+.+.++++..+..+.+|||...++.++..+..+... ++.+.++++.|++..+.++|+....|..+
T Consensus 546 YVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK 625 (1042)
T KOG0924|consen 546 YVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRK 625 (1042)
T ss_pred HHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCcee
Confidence 33455566666777778889999999999887777666432 57899999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
|+|||++|+..|.||+|.+||+.++ |.|.++.-||.|||||.|. |.|+.+||.+
T Consensus 626 ~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p-G~cYRlYTe~ 697 (1042)
T KOG0924|consen 626 CIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP-GTCYRLYTED 697 (1042)
T ss_pred EEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC-cceeeehhhh
Confidence 9999999999999999999997665 6788999999999999985 9999999985
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=360.03 Aligned_cols=302 Identities=17% Similarity=0.259 Sum_probs=230.3
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCC
Q psy6409 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 1509 (1832)
Q Consensus 1431 ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~ 1509 (1832)
.+.+..+.++++++++||||||||.+|.+|++... ....++||++|||++|.|++..+. .++...|.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 34555666789999999999999999999888531 123479999999999999999885 45666777
Q ss_pred eEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh-hhcCCCh-HHHHHHHHhCCCCCC
Q psy6409 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFE-PDVQKILEYMPVTNL 1587 (1832)
Q Consensus 1510 ~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~-ll~~gf~-~~l~~Il~~l~~~~~ 1587 (1832)
.+...+++.+.. .....|+|+|||+|.+++... ..++++++|||||+|. .++.++. ..+..++..++
T Consensus 79 ~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr---- 147 (812)
T PRK11664 79 TVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR---- 147 (812)
T ss_pred eEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC----
Confidence 787777765422 235689999999999988764 4799999999999995 4443321 11222332222
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHH---
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK--- 1664 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~--- 1664 (1832)
...|+++||||++... ...|+.++..+.+... ...+.+.+.......+..
T Consensus 148 ---------------------~~lqlilmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v 200 (812)
T PRK11664 148 ---------------------DDLKLLIMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAV 200 (812)
T ss_pred ---------------------ccceEEEEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHH
Confidence 4578999999998652 3456666555544322 123555555444444432
Q ss_pred --HHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1665 --KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1665 --~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~---~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
.+..++.. ..+.+||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 201 ~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 201 ARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 23344432 467899999999999999999987 578899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------------------CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1740 DIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~------------------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||+|++||++++|. |-++|+||+|||||. ..|.|+.|+++.+.
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 999999999988764 346899999999998 69999999997643
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=343.84 Aligned_cols=342 Identities=23% Similarity=0.290 Sum_probs=253.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|. .|+++|..+.+.+..|+ |+.++||+|||++|++|++.... .|..++|++||++||.|.++.+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH------------hCCCEEEEcCCHHHHHHHHHHH
Confidence 565 79999999999988886 99999999999999999964321 2456999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhhcC-CCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDM-GFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~d~-gf~ 897 (1832)
..+...+|+++++++||.+..++.... .++|+||||++| .|+|..+. +.+..+.++||||||.|+-. ...
T Consensus 118 ~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 118 GQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred HHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 999999999999999999876554443 589999999999 88887662 46789999999999987631 111
Q ss_pred HH---------------HHHHHHhCCC-----------------------------CCCCCC------------------
Q psy6409 898 PD---------------VQKILEYMPV-----------------------------TNLKPD------------------ 915 (1832)
Q Consensus 898 ~~---------------i~~Il~~l~~-----------------------------~~~~~~------------------ 915 (1832)
|- ...|...+.. .+....
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 10 0111111110 000000
Q ss_pred ---------------------------CchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHH
Q psy6409 916 ---------------------------TEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 916 ---------------------------~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~ 950 (1832)
....+.+...+..-+. .+.+..+.++|+|......
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 355 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE 355 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH
Confidence 0000001111100000 0223467788999876666
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHH--cCCCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~--~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
.|...|--+ +.+ -+...+...... -..+.....|...+.+.+. ...+.|+||||+++..++.++..|...|+++
T Consensus 356 E~~~iY~l~-vv~--IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 356 EFEKIYNLE-VVV--VPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred HHHHHhCCC-EEE--eCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 666655433 222 222333222222 1234456667777766553 2467899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcC-------cCEEEEcCCCCCHhHHHHHhcccccCCCCcEE
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD-------VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~-------v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~a 1100 (1832)
..+||. +.+|+..+..|+.+...|+||||+|+||+||+. ..+||+++.|.|...|.|++|||||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 889999999999999999999999999999998 55999999999999999999999999999999
Q ss_pred EEEecCCCc
Q psy6409 1101 VSFCTKDDS 1109 (1832)
Q Consensus 1101 i~~~~~~d~ 1109 (1832)
.+|++.+|.
T Consensus 511 ~~~ls~eD~ 519 (745)
T TIGR00963 511 RFFLSLEDN 519 (745)
T ss_pred EEEEeccHH
Confidence 999999874
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=313.08 Aligned_cols=333 Identities=23% Similarity=0.294 Sum_probs=255.1
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 738 EILEIIEK-IGYAEP-TPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 738 ~l~~~l~~-~g~~~p-t~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
.+.++|++ +|+.++ ++.|++|+..+.. ++||.|++|||+||++||.||.|.+ +...||+.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 45566665 577654 7899999999987 4799999999999999999999852 3489999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHH------HhcCCceeecCHHHHHHH----HHccccccCCceeEE
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR------LRLGCEIVIATPGRLIDV----LENRYLVLNQCTYIV 884 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~------l~~~~~IlV~TP~rL~d~----l~~~~~~l~~~~~lV 884 (1832)
.+|...+.+.+.++ .+.+-.+.+-++-.+.... .+....|++.||+....- +.+....-+.+.|+|
T Consensus 71 iALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~v 146 (641)
T KOG0352|consen 71 IALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEE
Confidence 99999988888876 4445555555554443222 223578999999876422 222333455679999
Q ss_pred EecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH--HHHHhcCCC
Q psy6409 885 LDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 960 (1832)
Q Consensus 885 iDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~--~~~~~l~~p 960 (1832)
+||||++.+|| |+|++..+-+.. +.......+.++||.++.+.. +....+.+|
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LR-----------------------S~~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLR-----------------------SVCPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHH-----------------------hhCCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 99999999998 999887764422 233456789999999888765 344557788
Q ss_pred cEEEEcccCCCCcceEEEEEEcch----hhHHHHHHHHHHcC-------------CCCCEEEEEcccchHHHHHHHHHHc
Q psy6409 961 ATVYIGSVGKPTERIEQIVYILSE----QDKRKKLMEVLNRG-------------VKKPVIIFVNQKKGADVLAKGLEKL 1023 (1832)
Q Consensus 961 ~~v~~~~~~~~~~~i~q~~~~~~~----~~k~~~L~~~l~~~-------------~~~~vIVFv~s~~~~~~l~~~L~~~ 1023 (1832)
+.++-...+..+. ++-+.- .+-+..|.++.... ..+-.||||.|++.|+.++-.|...
T Consensus 204 VAiFkTP~FR~NL-----FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~ 278 (641)
T KOG0352|consen 204 VAIFKTPTFRDNL-----FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA 278 (641)
T ss_pred HHhccCcchhhhh-----hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc
Confidence 7665433332221 111110 11222333332211 1235899999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
|+++..+|+|+...+|.++.+.|.+|++.|++||..+++|+|-|+|.+|||+++|.+++.|.|..|||||.|....|-++
T Consensus 279 Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 279 GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHH
Q psy6409 1104 CTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~ 1117 (1832)
|..+|..-++.|.+
T Consensus 359 YsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 359 YSRQDKNALNFLVS 372 (641)
T ss_pred ecccchHHHHHHHh
Confidence 99999877776644
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=342.59 Aligned_cols=342 Identities=23% Similarity=0.253 Sum_probs=243.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|......+..| .|+.++||+|||++|++|++.... .|+.++|++|+++||.|+++.+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL------------~g~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL------------TGKGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh------------cCCceEEeCCCHHHHHHHHHHH
Confidence 454 5555555555554444 799999999999999999875542 2556999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCc---hHHHHHHHhcCCceeecCHHHH-HHHHHcc------ccccCCceeEEEecchhhhcCC
Q psy6409 826 NKFGTPLGIRTVLVVGGLS---REEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMIDMG 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~---~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~------~~~l~~~~~lViDEaH~l~d~g 895 (1832)
..+...+|+.+.+++++.. ...+......+++|+||||++| .+.|... ...+..+.++|+||||.|+-+.
T Consensus 132 ~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 132 GPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred HHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 9999999999999887622 2223334445899999999999 5655332 2357789999999999985321
Q ss_pred -C---------------hHHHHHHHHhCCCC-----------------------------CCCCCCch------------
Q psy6409 896 -F---------------EPDVQKILEYMPVT-----------------------------NLKPDTED------------ 918 (1832)
Q Consensus 896 -f---------------~~~i~~Il~~l~~~-----------------------------~~~~~~~~------------ 918 (1832)
. ...+..++..+... ++ .+..+
T Consensus 212 artpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l-~~~~~~~~~~~i~~al~ 290 (762)
T TIGR03714 212 AQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNL-YSEEYFELVRHINLALR 290 (762)
T ss_pred CcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCcc-CChhhHHHHHHHHHHHH
Confidence 1 11122222222110 00 00000
Q ss_pred ----------------------------------hHHHHHHHHhhc------------------cccccceEEEEEecCC
Q psy6409 919 ----------------------------------AEDENKLLANYN------------------SKKKYRQTVMFTATMP 946 (1832)
Q Consensus 919 ----------------------------------~~~~~~ll~~~~------------------~~~~~~q~v~~SATl~ 946 (1832)
.+.+...+..-+ -.+.+..+.++|+|..
T Consensus 291 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 370 (762)
T TIGR03714 291 AHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK 370 (762)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh
Confidence 000110110000 0123456788999976
Q ss_pred hHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc
Q psy6409 947 PAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL 1023 (1832)
Q Consensus 947 ~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~ 1023 (1832)
.....|...|-- + +..-+...+...... -..+.....|...+.+.+.. ..+.|+||||+++..++.++..|...
T Consensus 371 ~~~~Ef~~iY~l-~--v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 371 VAEKEFIETYSL-S--VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred hHHHHHHHHhCC-C--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 666667655532 2 222233333333322 23556677888888887765 45779999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc---------CcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------DVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
|+++..+||.+.+.++..+...++.| .|+||||+++||+||| ++.+||+|++|....+ +||+|||||.
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 99999999999999998888888777 6999999999999999 9999999999988766 9999999999
Q ss_pred CCCcEEEEEecCCCc
Q psy6409 1095 GKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1095 g~~G~ai~~~~~~d~ 1109 (1832)
|.+|.+++|++.+|.
T Consensus 525 G~~G~s~~~is~eD~ 539 (762)
T TIGR03714 525 GDPGSSQFFVSLEDD 539 (762)
T ss_pred CCceeEEEEEccchh
Confidence 999999999998763
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=354.84 Aligned_cols=331 Identities=25% Similarity=0.304 Sum_probs=259.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
.-....+|+...+|-|.+||..++.|+|.+|.+|||+||++||.||++. .++..|||.|..+|++
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHHHHH
Confidence 3344568999999999999999999999999999999999999999973 2448999999999998
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhc---CCceeecCHHHHHHHH--HccccccCC---ceeEEEecc
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL---GCEIVIATPGRLIDVL--ENRYLVLNQ---CTYIVLDEA 888 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~---~~~IlV~TP~rL~d~l--~~~~~~l~~---~~~lViDEa 888 (1832)
.+...+.. .+|....+.++....++. ..+.. ..+|++.||+++...- ......|.. +.++|||||
T Consensus 319 DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 87666643 488899999998875443 23333 3799999999986332 222334555 899999999
Q ss_pred hhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC--CCcEEE
Q psy6409 889 DRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVY 964 (1832)
Q Consensus 889 H~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~--~p~~v~ 964 (1832)
|++.+|| |+|.+..+...... .....+|++|||.+..+..-+-..|+ +|.. +
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~-----------------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~ 450 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLRIR-----------------------FPGVPFIALTATATERVREDVIRSLGLRNPEL-F 450 (941)
T ss_pred HHhhhhcccccHHHHHHHHHHhh-----------------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcce-e
Confidence 9999998 99999887543311 12267999999998887665544443 4442 2
Q ss_pred EcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 965 IGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
-.....+ ++...+..-. ...-...+..+-..++...+||||.++.+|+.++..|...|+.+..+|+||+..+|..|.
T Consensus 451 ~~sfnR~--NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 451 KSSFNRP--NLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred cccCCCC--CceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 2222222 2322222222 122233333333446778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
..|-.++++|+|||=++++|||.|+|..||||.+|+|++.|+|.+|||||.|....|++|+...|...+..+
T Consensus 529 ~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 529 KAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred HHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985555444
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=351.49 Aligned_cols=336 Identities=25% Similarity=0.308 Sum_probs=264.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
+.+..+...+|+..++|-|.+||..++.|+|+++.+|||+||++||.||++. -++.+|||.|..+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLIS 315 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHH
Confidence 3444455568999999999999999999999999999999999999999973 2458999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hhhc---CCcEEEeCHHHHHHHH--HccccccCC---ceeEEE
Q psy6409 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL---GCEIVIATPGRLIDVL--ENRYLVLNQ---CTYIVL 1560 (1832)
Q Consensus 1492 La~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~---~~~IiVaTP~rl~~~l--~~~~~~l~~---v~llVi 1560 (1832)
|++.+...+.. .++....+.++....++.. .+.. .++|+..||+++...- ......+.. +.++||
T Consensus 316 Lm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 316 LMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred HHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 99887766644 4788899999888754322 2333 3789999999986432 222234444 899999
Q ss_pred ccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--CCc
Q psy6409 1561 DEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPA 1636 (1832)
Q Consensus 1561 DEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~--~p~ 1636 (1832)
||||+..+|| |+|.+..+....... ....++.+|||.+..+..-+-..|+ +|.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~-----------------------~~vP~iALTATAT~~v~~DIi~~L~l~~~~ 448 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRF-----------------------PGVPFIALTATATERVREDVIRSLGLRNPE 448 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhC-----------------------CCCCeEEeehhccHHHHHHHHHHhCCCCcc
Confidence 9999999998 999998876544311 1256999999998888765554444 443
Q ss_pred EEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH-HhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 1637 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715 (1832)
Q Consensus 1637 ~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l-~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~ 1715 (1832)
+...+..++ ++...+..-........+...+ ..++..+.||||.++..|+.++..|...++.+..||+||+..+|.
T Consensus 449 -~~~~sfnR~--NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~ 525 (941)
T KOG0351|consen 449 -LFKSSFNRP--NLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERE 525 (941)
T ss_pred -eecccCCCC--CceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHH
Confidence 222233333 3333333333223333333333 345788999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHH
Q psy6409 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792 (1832)
Q Consensus 1716 ~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1792 (1832)
.|...|..++++|+|||=+++.|||.|+|..||||.+|++++.|.|-+|||||.|....|++|+...|...+..+..
T Consensus 526 ~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 526 TVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred HHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997666555543
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=334.05 Aligned_cols=333 Identities=25% Similarity=0.297 Sum_probs=235.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
+.+.......--....++.||.+.+..++ |+|+|+++|||+|||++++..|+.|+...| ..++||+||+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----------~~KiVF~aP~ 115 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----------KGKVVFLAPT 115 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----------cceEEEeeCC
Confidence 34444333333355689999999999999 999999999999999999999999998755 3679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccc-cCCceeEEEccchhhhc
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~-l~~v~llViDEaH~ll~ 1568 (1832)
+.|+.|+...+..++.+ ..+....||..+......+....+|+|+||+.+.+.|.++... ++.+.++||||||+-..
T Consensus 116 ~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k 193 (746)
T KOG0354|consen 116 RPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK 193 (746)
T ss_pred chHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc
Confidence 99999988888888765 5566666665544444456667899999999999988876544 59999999999999876
Q ss_pred CCChHHHH-HHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHH-----------------
Q psy6409 1569 MGFEPDVQ-KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS----------------- 1630 (1832)
Q Consensus 1569 ~gf~~~l~-~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~----------------- 1630 (1832)
..-+..+. ..+.+-. ...|++++|||+....+.....
T Consensus 194 n~~Y~~Vmr~~l~~k~-------------------------~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~ 248 (746)
T KOG0354|consen 194 NHPYNNIMREYLDLKN-------------------------QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIK 248 (746)
T ss_pred cccHHHHHHHHHHhhh-------------------------ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhh
Confidence 54333332 2222211 1239999999986443321110
Q ss_pred ---------------------------------hcC-----------CCcEEEEc------ccCCCCcceEEE-------
Q psy6409 1631 ---------------------------------YLR-----------RPATVYIG------SVGKPTERIEQI------- 1653 (1832)
Q Consensus 1631 ---------------------------------~l~-----------~p~~v~i~------~~~~~~~~i~q~------- 1653 (1832)
++. +....+-. ....+...-.+.
T Consensus 249 ~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~ 328 (746)
T KOG0354|consen 249 SNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALH 328 (746)
T ss_pred hhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHH
Confidence 000 00000000 000000000000
Q ss_pred -------------EEE---------------c-------------------------------chhhHHHHHHHHHH---
Q psy6409 1654 -------------VYI---------------L-------------------------------SEQDKRKKLMEVLN--- 1671 (1832)
Q Consensus 1654 -------------~~~---------------~-------------------------------~~~~k~~~l~~~l~--- 1671 (1832)
+.. . .+..|+..+.+++.
T Consensus 329 ~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f 408 (746)
T KOG0354|consen 329 LRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQF 408 (746)
T ss_pred HHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHh
Confidence 000 0 01123334444443
Q ss_pred -hCCCCcEEEEECchhHHHHHHHHHHH---cCCcEEEEcC--------CCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1672 -RGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1672 -~~~~~~vIVFv~s~~~a~~l~~~L~~---~~~~v~~lHg--------~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
..+..++||||.+|..|..|...|.. .|+....+-| +|++.++.++++.|++|+++|||||+++++|+
T Consensus 409 ~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGL 488 (746)
T KOG0354|consen 409 EQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGL 488 (746)
T ss_pred hcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccC
Confidence 23567899999999999999999873 2334444333 89999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|||+|++||.||...|+...+||+|| ||+ +.|.++++++..
T Consensus 489 DI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 489 DIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred CcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 99999999999999999999999999 997 578999888854
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=351.72 Aligned_cols=342 Identities=23% Similarity=0.292 Sum_probs=270.4
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1411 PTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1411 ~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
...+..++...|...|+++|.+|+..+.+|+|+||+.|||||||.||++||+..+...+ ..++|||.||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtn 125 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTN 125 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechh
Confidence 34457888888999999999999999999999999999999999999999999887643 33799999999
Q ss_pred HHHHHHHHHHHHhcCCCC--CeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccch
Q psy6409 1491 ELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1491 eLa~Qi~~~~~~~~~~~g--~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH 1564 (1832)
+||+.+.+.++++...++ +++..++|+....+......+.++||+++|.+|..++.. +.+.+.++.+||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 999999999999987777 788889999988877677788899999999999886543 33567889999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~ 1644 (1832)
.+ ...|+..+..++.++. ..+.......|+|+.|||+.+..+ ++..+........+...+
T Consensus 206 tY-rGv~GS~vA~llRRL~------------------~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g 265 (851)
T COG1205 206 TY-RGVQGSEVALLLRRLL------------------RRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDG 265 (851)
T ss_pred ec-cccchhHHHHHHHHHH------------------HHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCC
Confidence 54 4457777777766552 222333467899999999988754 555566555444344444
Q ss_pred CCCcceEEEEEEc-----ch---hhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHH----HHHHHcC----CcEEEEc
Q psy6409 1645 KPTERIEQIVYIL-----SE---QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLA----KGLEKLG----YNACTLH 1706 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~-----~~---~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~----~~L~~~~----~~v~~lH 1706 (1832)
.+........... .. ......+..+... ...-++|+|+.++..++.++ ..+...+ ..+..++
T Consensus 266 ~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~ 345 (851)
T COG1205 266 SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYR 345 (851)
T ss_pred CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeecc
Confidence 4444333322211 01 1222222222222 25678999999999999997 4444445 6789999
Q ss_pred CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1707 g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|++...+|..++..|++|++.++++|++++.||||.+++.||++..|. ++.+++||.|||||.++.+..+..+..+
T Consensus 346 ~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 346 AGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999888887777754
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=336.45 Aligned_cols=340 Identities=23% Similarity=0.253 Sum_probs=238.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1427 tpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
+|+|.|++..+..+++.|+.++||+|||++|.+|++.... .++.|+|++|+++||.|.+.++..+...
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL------------~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL------------TGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh------------cCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 4455555555554455799999999999999999875442 2556999999999999999999999999
Q ss_pred CCCeEEEEECCcc---hHHHHHHhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhhcCC------
Q psy6409 1507 LGIRTVLVVGGLS---REEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMIDMG------ 1570 (1832)
Q Consensus 1507 ~g~~v~~l~gg~~---~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll~~g------ 1570 (1832)
+|+++.+++++.. ..........+++|+++||++| .+.+... ...+..+.++|+||||.|+-..
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 9999998877622 1122223335799999999999 5666432 3457789999999999875321
Q ss_pred ----------ChHHHHHHHHhCCCCC-C---------------------------CCCCchhhh----HHHHHhhh--cc
Q psy6409 1571 ----------FEPDVQKILEYMPVTN-L---------------------------KPDTEDAED----ENKLLANY--NS 1606 (1832)
Q Consensus 1571 ----------f~~~l~~Il~~l~~~~-~---------------------------~~~~~~~~~----~~~l~~~~--~~ 1606 (1832)
+...+..++..+.... + ..+...... ...+.+.. ..
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 1112222333332110 0 000000000 00000000 00
Q ss_pred ----------------------------------------------------------ccCcceEEEEEccCChHHHHHH
Q psy6409 1607 ----------------------------------------------------------KKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1607 ----------------------------------------------------------~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
-+.+..+.+||.|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 0111245567777655555665
Q ss_pred HHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEE
Q psy6409 1629 RSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705 (1832)
Q Consensus 1629 ~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~l 1705 (1832)
..|--+ +..-+...|...... -..+.....|..+++..+.. ....|+||||+|+..++.++..|...|+++..+
T Consensus 378 ~iY~l~---v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 378 ETYSLS---VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred HHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 544322 222333444433322 23455677888888888765 467899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEE
Q psy6409 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776 (1832)
Q Consensus 1706 Hg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai 1776 (1832)
||.+.+.++..+...|+.| .|+|||++++||+||| ++.+|++|++|....+ +||+|||||.|++|.++
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 9999999998888888777 6999999999999999 9999999999988766 99999999999999999
Q ss_pred EEeeCCCh
Q psy6409 1777 SFCTKDDS 1784 (1832)
Q Consensus 1777 ~~~~~~d~ 1784 (1832)
+|++..|.
T Consensus 532 ~~is~eD~ 539 (762)
T TIGR03714 532 FFVSLEDD 539 (762)
T ss_pred EEEccchh
Confidence 99998764
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=332.55 Aligned_cols=324 Identities=25% Similarity=0.300 Sum_probs=232.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
-+...++.||.+.+..++ |+|+||++|||+|||++++..++.|+...| +.++||+|||+.|+.|+...+
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----------cceEEEeeCCchHHHHHHHHH
Confidence 456689999999999999 999999999999999999999999986533 478999999999999998889
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccc-cCCceeEEEecchhhhcCCChHHHH-HH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMIDMGFEPDVQ-KI 903 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~-l~~~~~lViDEaH~l~d~gf~~~i~-~I 903 (1832)
..++.+ ..+....||.........+....+|+|+||+.|.+.|..+... |+.+.++||||||+-....-...+. ..
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 888766 4556666675544444456668999999999999988776543 5899999999999876433222222 22
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh---------------------------
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY--------------------------- 956 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~--------------------------- 956 (1832)
+..- ....|++++|||+....+......
T Consensus 205 l~~k-------------------------~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~ 259 (746)
T KOG0354|consen 205 LDLK-------------------------NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQ 259 (746)
T ss_pred HHhh-------------------------hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCc
Confidence 2211 112399999999764433221110
Q ss_pred -----------------------cC-----------CCcEEEEc---cc-CCCCcce--EEE--EE--------------
Q psy6409 957 -----------------------LR-----------RPATVYIG---SV-GKPTERI--EQI--VY-------------- 980 (1832)
Q Consensus 957 -----------------------l~-----------~p~~v~~~---~~-~~~~~~i--~q~--~~-------------- 980 (1832)
+. +....+.. .. .....+. .+. +.
T Consensus 260 i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~ 339 (746)
T KOG0354|consen 260 IPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS 339 (746)
T ss_pred ccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh
Confidence 00 00000000 00 0000000 000 00
Q ss_pred ----E----------------------------------------------cchhhHHHHHHHHHHc----CCCCCEEEE
Q psy6409 981 ----I----------------------------------------------LSEQDKRKKLMEVLNR----GVKKPVIIF 1006 (1832)
Q Consensus 981 ----~----------------------------------------------~~~~~k~~~L~~~l~~----~~~~~vIVF 1006 (1832)
. -.+..|+..|.+++.. .+..++|||
T Consensus 340 ~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIF 419 (746)
T KOG0354|consen 340 DGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIF 419 (746)
T ss_pred cchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEE
Confidence 0 0012334444444432 345689999
Q ss_pred EcccchHHHHHHHHHH---cCCcEEEEcC--------CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEc
Q psy6409 1007 VNQKKGADVLAKGLEK---LGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINY 1075 (1832)
Q Consensus 1007 v~s~~~~~~l~~~L~~---~g~~v~~lhg--------~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~ 1075 (1832)
|.+|..|..|..+|.. .|+....+-| +|+|.++.++++.|++|.++|||||+|+++||||++|++||.|
T Consensus 420 ve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcY 499 (746)
T KOG0354|consen 420 VETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICY 499 (746)
T ss_pred EehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEe
Confidence 9999999999999973 2344444443 8999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1076 DMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1076 d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|...++...+||.|| ||+. .|.++.+++..+.
T Consensus 500 d~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 500 DYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred cCCccHHHHHHHhcc-cccc-CCeEEEEEcchhH
Confidence 999999999999999 9975 5999999995443
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=334.50 Aligned_cols=342 Identities=23% Similarity=0.298 Sum_probs=254.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|..+.+.+..|+ |+.++||+|||++|.+|++.... .|..|+|++||.+||.|.+.++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH------------hCCCEEEEcCCHHHHHHHHHHH
Confidence 576 89999999999888876 99999999999999999964332 2556999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcCCCh-
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDMGFE- 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~gf~- 1572 (1832)
..+...+|+++.+++|+.+...+.... .++|+|+||++| .++++.+. +.+..+.++||||||.|+-...+
T Consensus 118 ~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 118 GQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred HHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 999999999999999999876554433 589999999999 88887763 46789999999999987531100
Q ss_pred ----------H-----HHHHHHHhCCCC----------------------------CCCCCCchh----hhHHHHHhh--
Q psy6409 1573 ----------P-----DVQKILEYMPVT----------------------------NLKPDTEDA----EDENKLLAN-- 1603 (1832)
Q Consensus 1573 ----------~-----~l~~Il~~l~~~----------------------------~~~~~~~~~----~~~~~l~~~-- 1603 (1832)
+ ....|...+... ....+.... .....+.+.
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 0 011111111100 000000000 000000000
Q ss_pred -------------------------------------------h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1604 -------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1604 -------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
+ +.-+.+..+.+||.|......
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 355 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE 355 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH
Confidence 0 001123356789999877766
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHH--hCCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~--~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+. + .-+...|....... ..+.....|..++.+.+. +..+.|+||||+|+..++.++..|...|+++
T Consensus 356 E~~~iY~l~v--v-~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 356 EFEKIYNLEV--V-VVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred HHHHHhCCCE--E-EeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 6666664432 2 22333443332221 234455667777776553 3467899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCC-------CCEEEEeCCCCCHHHHHHHhcccccCCCccEE
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD-------VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~-------v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a 1775 (1832)
..+||. +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|++|||||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 889999999999999999999999999999998 56999999999999999999999999999999
Q ss_pred EEEeeCCCh
Q psy6409 1776 VSFCTKDDS 1784 (1832)
Q Consensus 1776 i~~~~~~d~ 1784 (1832)
.+|++..|.
T Consensus 511 ~~~ls~eD~ 519 (745)
T TIGR00963 511 RFFLSLEDN 519 (745)
T ss_pred EEEEeccHH
Confidence 999999874
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=355.40 Aligned_cols=296 Identities=23% Similarity=0.339 Sum_probs=212.3
Q ss_pred HHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc----hhHHHHHHHHHHHhcCCC
Q psy6409 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT----RELAQQIEEETNKFGTPL 832 (1832)
Q Consensus 757 ~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt----reLa~Qi~~~~~~~~~~~ 832 (1832)
+.+..+..++.+||+|+||||||+ ++|.+..-. .......+++..|. ++||.+++.++.. .+
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~---------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~---~l 146 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL---------GRGVKGLIGHTQPRRLAARTVANRIAEELET---EL 146 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc---------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhh---hh
Confidence 444455566778999999999999 688653311 01122357777885 5777777776654 22
Q ss_pred CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch-hhhcCCChHH-HHHHHHhCCCC
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPD-VQKILEYMPVT 910 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH-~l~d~gf~~~-i~~Il~~l~~~ 910 (1832)
|-.|++-+...+ ....+++|+|+|||+|++.+.... .|+.+++||||||| ++++.+|... +..++.
T Consensus 147 G~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~----- 214 (1294)
T PRK11131 147 GGCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP----- 214 (1294)
T ss_pred cceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-----
Confidence 333333222211 123479999999999999998765 59999999999999 6888887642 222211
Q ss_pred CCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch------
Q psy6409 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE------ 984 (1832)
Q Consensus 911 ~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~------ 984 (1832)
..+..|+|+||||++. +.|+..|.+.|. +.+.....+ ++..+..+..
T Consensus 215 ---------------------~rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~ 267 (1294)
T PRK11131 215 ---------------------RRPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTE 267 (1294)
T ss_pred ---------------------cCCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhh
Confidence 1235799999999974 578887777664 444332222 3333333321
Q ss_pred hhHHHHHHHHH---HcCCCCCEEEEEcccchHHHHHHHHHHcCCc---EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 985 QDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYN---ACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 985 ~~k~~~L~~~l---~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~---v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
.+....++..+ .....+.+||||+++.+++.+++.|...+++ +.++||+|++++|..+++. .|..+||||||
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc
Confidence 22333333332 2345678999999999999999999988765 6789999999999999986 58899999999
Q ss_pred cccccCCCcCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1059 VAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++++|||||+|++|||+|. |.|.++|+||+|||||. ..|.||.|+++++
T Consensus 346 IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 9999999999999999873 34678999999999999 4799999999875
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-32 Score=305.40 Aligned_cols=332 Identities=23% Similarity=0.294 Sum_probs=253.7
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1413 EILEIIEK-IGYAEP-TPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1413 ~ll~~l~~-~g~~~p-tpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
.+-++|++ +|+..+ ++.|.+|+.++..+ .||.+++|||+||++||.||.|.+ +..+||+.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 34566765 687665 89999999999976 699999999999999999999842 4489999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH---h---hcCCcEEEeCHHHHHHH----HHccccccCCceeEE
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---L---RLGCEIVIATPGRLIDV----LENRYLVLNQCTYIV 1559 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~---l---~~~~~IiVaTP~rl~~~----l~~~~~~l~~v~llV 1559 (1832)
.+|...+.+.+.++ .+.+..+.+-.+..+.... | +....++.-||+....- +.+....-.-+.|+|
T Consensus 71 iALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~v 146 (641)
T KOG0352|consen 71 IALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEE
Confidence 99999999999886 3444455555554433221 1 23467999999875422 223334456689999
Q ss_pred EccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH--HHhcCCC
Q psy6409 1560 LDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA--RSYLRRP 1635 (1832)
Q Consensus 1560 iDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~--~~~l~~p 1635 (1832)
+||||+..+|| |+|++-.+-+... .-.....+.+|||.++.+.+-+ ...|.+|
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LRS-----------------------~~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLRS-----------------------VCPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHHh-----------------------hCCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 99999999998 8888776644322 2234568999999998887543 4456677
Q ss_pred cEEEEcccCCCCcceEEEEEEc----chhhHHHHHHHHHHhC-------------CCCcEEEEECchhHHHHHHHHHHHc
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYIL----SEQDKRKKLMEVLNRG-------------VKKPVIIFVNQKKGADVLAKGLEKL 1698 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~----~~~~k~~~l~~~l~~~-------------~~~~vIVFv~s~~~a~~l~~~L~~~ 1698 (1832)
+-++-.+.-+.+. ++-. .-.+-...|.++..+. ..+-.||||.|+..|+.++-.|...
T Consensus 204 VAiFkTP~FR~NL-----FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~ 278 (641)
T KOG0352|consen 204 VAIFKTPTFRDNL-----FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA 278 (641)
T ss_pred HHhccCcchhhhh-----hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc
Confidence 6554333222211 1111 0122233444444321 2345899999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1699 ~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
|+++..+|+|+...+|.++.+.|.+|++.|++||..++.|||-|+|.+|||+++|.|++.|.|-.|||||.|....|-+|
T Consensus 279 Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 279 GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCChhHHHHHH
Q psy6409 1779 CTKDDSHLFYDLK 1791 (1832)
Q Consensus 1779 ~~~~d~~~~~~l~ 1791 (1832)
+...|...+.-|.
T Consensus 359 YsR~D~~~i~FLi 371 (641)
T KOG0352|consen 359 YSRQDKNALNFLV 371 (641)
T ss_pred ecccchHHHHHHH
Confidence 9999876665443
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=319.60 Aligned_cols=289 Identities=20% Similarity=0.243 Sum_probs=202.8
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1429 IQRQAIPIGLQNRD--IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1429 iQ~~ai~~il~g~d--vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
+|.++++.+..+.+ ++++||||||||++|++|++. .+.+++|++|+++|+.|+++.++.++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------------GENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------------cCCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 59999999999874 788999999999999999973 1335899999999999999999988633
Q ss_pred ----CCCeEEEEECCcchHHHHH--------------------HhhcCCcEEEeCHHHHHHHHHcccc--------ccCC
Q psy6409 1507 ----LGIRTVLVVGGLSREEQGF--------------------RLRLGCEIVIATPGRLIDVLENRYL--------VLNQ 1554 (1832)
Q Consensus 1507 ----~g~~v~~l~gg~~~~~~~~--------------------~l~~~~~IiVaTP~rl~~~l~~~~~--------~l~~ 1554 (1832)
.+..+..+.|....+.... .....++|+++||+.|..++..+.. .+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 3566777777633221100 0123578999999999877654321 2578
Q ss_pred ceeEEEccchhhhcCCChH-----HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH
Q psy6409 1555 CTYIVLDEADRMIDMGFEP-----DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629 (1832)
Q Consensus 1555 v~llViDEaH~ll~~gf~~-----~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~ 1629 (1832)
+++|||||+|.+..++... ....++... ....+++++|||+++.+...+.
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~i~lSAT~~~~~~~~l~ 200 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-------------------------ECRRKFVFLSATPDPALILRLQ 200 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHHHHHHhh-------------------------hcCCcEEEEecCCCHHHHHHHH
Confidence 9999999999876433111 111111111 1225899999999998777766
Q ss_pred Hh--cCCCcEEEEcc-----------cCCC-------CcceEEEEEEcchhhHHHHH---HHHH----HhCCCCcEEEEE
Q psy6409 1630 SY--LRRPATVYIGS-----------VGKP-------TERIEQIVYILSEQDKRKKL---MEVL----NRGVKKPVIIFV 1682 (1832)
Q Consensus 1630 ~~--l~~p~~v~i~~-----------~~~~-------~~~i~q~~~~~~~~~k~~~l---~~~l----~~~~~~~vIVFv 1682 (1832)
.. +..|.....+. ...+ ...+.+.+.. ....+...+ .+.+ ......++||||
T Consensus 201 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~ 279 (357)
T TIGR03158 201 NAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIIL 279 (357)
T ss_pred hccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 54 34443222222 0000 0234444443 222222222 2222 223567899999
Q ss_pred CchhHHHHHHHHHHHcC--CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHH
Q psy6409 1683 NQKKGADVLAKGLEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~--~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yi 1760 (1832)
||+..|+.++..|...+ +.+..+||.+++.+|..+ ++.+|||||+++++|||+|.+ +|| ++ |.+.++|+
T Consensus 280 nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yi 350 (357)
T TIGR03158 280 DSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFW 350 (357)
T ss_pred CCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHh
Confidence 99999999999999864 578899999999998754 478999999999999999987 565 55 89999999
Q ss_pred HHhcccc
Q psy6409 1761 HRIGRTG 1767 (1832)
Q Consensus 1761 QRiGRaG 1767 (1832)
||+||+|
T Consensus 351 qR~GR~g 357 (357)
T TIGR03158 351 QRLGRLG 357 (357)
T ss_pred hhcccCC
Confidence 9999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=347.82 Aligned_cols=321 Identities=26% Similarity=0.320 Sum_probs=238.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+|++||.+++..++.+ |+|+++|||+|||++|++++...+.. .+.++|||+||++|+.|+...++++
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----------~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----------KGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 47999999999988887 99999999999999999998876521 3578999999999999999999998
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
+...+..++.++|+.+... ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++.+...... |...+
T Consensus 82 ~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~---i~~~~- 156 (773)
T PRK13766 82 LNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVY---IAERY- 156 (773)
T ss_pred hCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHH---HHHHH-
Confidence 6544567888888887654 344556789999999999888877888899999999999999865432221 22111
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH---HHHHHhc------------------CCCcEEEEcc
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE---RLARSYL------------------RRPATVYIGS 1642 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~---~~~~~~l------------------~~p~~v~i~~ 1642 (1832)
......+.+++||||+..... .++..+. ..+....+..
T Consensus 157 ---------------------~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v 215 (773)
T PRK13766 157 ---------------------HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRV 215 (773)
T ss_pred ---------------------HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEe
Confidence 111234578999999743221 1111111 0000000000
Q ss_pred --------------------------cCCC--Cc-------------ceEEE----------------------------
Q psy6409 1643 --------------------------VGKP--TE-------------RIEQI---------------------------- 1653 (1832)
Q Consensus 1643 --------------------------~~~~--~~-------------~i~q~---------------------------- 1653 (1832)
.+.. .. .+.+.
T Consensus 216 ~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (773)
T PRK13766 216 ELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELL 295 (773)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00000
Q ss_pred --------------------------------------------EEEcchhhHHHHHHHHHHh----CCCCcEEEEECch
Q psy6409 1654 --------------------------------------------VYILSEQDKRKKLMEVLNR----GVKKPVIIFVNQK 1685 (1832)
Q Consensus 1654 --------------------------------------------~~~~~~~~k~~~l~~~l~~----~~~~~vIVFv~s~ 1685 (1832)
........|...|.+++.. ....++||||+++
T Consensus 296 ~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~ 375 (773)
T PRK13766 296 ETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYR 375 (773)
T ss_pred HHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcH
Confidence 0000112344455555543 4678999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHH
Q psy6409 1686 KGADVLAKGLEKLGYNACTLHGG--------KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1757 (1832)
Q Consensus 1686 ~~a~~l~~~L~~~~~~v~~lHg~--------ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~ 1757 (1832)
.+|+.|+..|...++.+..+||. |++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..
T Consensus 376 ~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~ 455 (773)
T PRK13766 376 DTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEI 455 (773)
T ss_pred HHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHH
Confidence 99999999999999999999886 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1758 DYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1758 ~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
.|+||+||+||.|. |.+++++..+.
T Consensus 456 r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 456 RSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 99999999999864 88888888764
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=348.25 Aligned_cols=323 Identities=24% Similarity=0.316 Sum_probs=240.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+|++||.+++..++.+ |+|+++|||+|||++|++++...+. ..+.++|||+||++|+.|+...++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-----------~~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-----------KKGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-----------hCCCeEEEEeCcHHHHHHHHHHHH
Confidence 4458999999999998887 9999999999999999999987652 245789999999999999999999
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
+++...+..+..++|+.+..+ ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+...+.
T Consensus 80 ~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~- 157 (773)
T PRK13766 80 KFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH- 157 (773)
T ss_pred HHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH-
Confidence 986554567888888877654 334555789999999999888877778899999999999999875332222222111
Q ss_pred CCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH---HHHHHHHhc------------------CCCcEEEE
Q psy6409 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA---VERLARSYL------------------RRPATVYI 965 (1832)
Q Consensus 907 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~---v~~~~~~~l------------------~~p~~v~~ 965 (1832)
.......+++||||.... +..+...+. ..+....+
T Consensus 158 ------------------------~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~ 213 (773)
T PRK13766 158 ------------------------EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWV 213 (773)
T ss_pred ------------------------hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEE
Confidence 111235789999996322 122222111 00000000
Q ss_pred cc--------------------------cCCC--Cc-------------ceEEE--------------------------
Q psy6409 966 GS--------------------------VGKP--TE-------------RIEQI-------------------------- 978 (1832)
Q Consensus 966 ~~--------------------------~~~~--~~-------------~i~q~-------------------------- 978 (1832)
.. .+.. .. .+.+.
T Consensus 214 ~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 293 (773)
T PRK13766 214 RVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVE 293 (773)
T ss_pred EeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00 00000
Q ss_pred ----------------------------------------------EEEcchhhHHHHHHHHHHc----CCCCCEEEEEc
Q psy6409 979 ----------------------------------------------VYILSEQDKRKKLMEVLNR----GVKKPVIIFVN 1008 (1832)
Q Consensus 979 ----------------------------------------------~~~~~~~~k~~~L~~~l~~----~~~~~vIVFv~ 1008 (1832)
........|...|.+++.. ..+.++||||+
T Consensus 294 ~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~ 373 (773)
T PRK13766 294 LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQ 373 (773)
T ss_pred HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 0000112345555666543 46679999999
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCC
Q psy6409 1009 QKKGADVLAKGLEKLGYNACTLHGG--------KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080 (1832)
Q Consensus 1009 s~~~~~~l~~~L~~~g~~v~~lhg~--------~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s 1080 (1832)
++..|+.|++.|...|+.+..+||. |++.+|..+++.|++|.++|||||+++++|+|+|++++||+||+|.+
T Consensus 374 ~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s 453 (773)
T PRK13766 374 YRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPS 453 (773)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCC
Confidence 9999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1081 ~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
...|+||+||+||.|. |.++++++.+.
T Consensus 454 ~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 454 EIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 9999999999999875 89999998764
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=318.46 Aligned_cols=289 Identities=20% Similarity=0.215 Sum_probs=201.2
Q ss_pred HHHHHHHHHHcCCc--EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 754 IQRQAIPIGLQNRD--IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 754 iQ~~ai~~il~grd--vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
+|.++++.+..+.+ ++++||||||||.+|++|++. .+.+++|++|+++|+.|+.+.+..+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------------GENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------------cCCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 59999999999874 788999999999999999973 1346899999999999999999887643
Q ss_pred ----CCCeEEEEEcCCchHHHH--------------------HHHhcCCceeecCHHHHHHHHHccc--------cccCC
Q psy6409 832 ----LGIRTVLVVGGLSREEQG--------------------FRLRLGCEIVIATPGRLIDVLENRY--------LVLNQ 879 (1832)
Q Consensus 832 ----~~i~v~~~~Gg~~~~~~~--------------------~~l~~~~~IlV~TP~rL~d~l~~~~--------~~l~~ 879 (1832)
.++.+..+.|.....-.. ......++|+++||+.|..++.+.. ..+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 356666666652211000 0012368899999999965443211 12578
Q ss_pred ceeEEEecchhhhcCCChH-----HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH
Q psy6409 880 CTYIVLDEADRMIDMGFEP-----DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~gf~~-----~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~ 954 (1832)
+++|||||+|.+..++... ....++.. .....+++++|||+|+.+.....
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~-------------------------~~~~~~~i~lSAT~~~~~~~~l~ 200 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRF-------------------------FECRRKFVFLSATPDPALILRLQ 200 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHHHHHHh-------------------------hhcCCcEEEEecCCCHHHHHHHH
Confidence 9999999999765432111 11111111 11236899999999988777766
Q ss_pred Hh--cCCCcEEEEccc-----------CC-------CCcceEEEEEEcchhhHHHH---HHH----HHHcCCCCCEEEEE
Q psy6409 955 SY--LRRPATVYIGSV-----------GK-------PTERIEQIVYILSEQDKRKK---LME----VLNRGVKKPVIIFV 1007 (1832)
Q Consensus 955 ~~--l~~p~~v~~~~~-----------~~-------~~~~i~q~~~~~~~~~k~~~---L~~----~l~~~~~~~vIVFv 1007 (1832)
.. +..|.....+.. .. ....+.+.+.. ....+... +.+ .+....+.++||||
T Consensus 201 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~ 279 (357)
T TIGR03158 201 NAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIIL 279 (357)
T ss_pred hccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 54 455544333330 00 01234444433 22222222 222 22233567899999
Q ss_pred cccchHHHHHHHHHHcC--CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHH
Q psy6409 1008 NQKKGADVLAKGLEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1008 ~s~~~~~~l~~~L~~~g--~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yv 1085 (1832)
+++..|+.++..|...+ +.+..+||.+++.+|..+ ++.+|||||+++++|||||.+ +|| ++ |.+..+|+
T Consensus 280 nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yi 350 (357)
T TIGR03158 280 DSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFW 350 (357)
T ss_pred CCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHh
Confidence 99999999999999864 578899999999998764 478999999999999999987 566 55 88999999
Q ss_pred HHhcccc
Q psy6409 1086 HRIGRTG 1092 (1832)
Q Consensus 1086 Qr~GRaG 1092 (1832)
||+||||
T Consensus 351 qR~GR~g 357 (357)
T TIGR03158 351 QRLGRLG 357 (357)
T ss_pred hhcccCC
Confidence 9999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=344.37 Aligned_cols=310 Identities=21% Similarity=0.295 Sum_probs=218.4
Q ss_pred CCCCCcHHHH---HHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 747 GYAEPTPIQR---QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 747 g~~~pt~iQ~---~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
.|....|+.. +.+..+..++.+|++|+||||||+ ++|.+..-. ......+++++.|.|..|..++.
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~---------~~~~~~~I~~tQPRRlAA~svA~ 129 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL---------GRGSHGLIGHTQPRRLAARTVAQ 129 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc---------CCCCCceEecCCccHHHHHHHHH
Confidence 3443444433 334444456778999999999999 678764311 01123478889999998888776
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch-hhhcCCChHH-HH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPD-VQ 901 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH-~l~d~gf~~~-i~ 901 (1832)
.+... +|..++..+|+....+. .....+.|+|+|||+|++.+.... .|+.+++||||||| ++++.+|.-. +.
T Consensus 130 RvA~e---lg~~lG~~VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk 203 (1283)
T TIGR01967 130 RIAEE---LGTPLGEKVGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLK 203 (1283)
T ss_pred HHHHH---hCCCcceEEeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHH
Confidence 66543 34444445554222111 123478999999999999987765 58999999999999 5888776543 33
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 981 (1832)
Q Consensus 902 ~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~ 981 (1832)
.++.. .+..++|+||||++ ...|+..|...|.. .+.....+ +...+..
T Consensus 204 ~il~~--------------------------rpdLKlIlmSATld--~~~fa~~F~~apvI-~V~Gr~~P---Vev~Y~~ 251 (1283)
T TIGR01967 204 QLLPR--------------------------RPDLKIIITSATID--PERFSRHFNNAPII-EVSGRTYP---VEVRYRP 251 (1283)
T ss_pred HHHhh--------------------------CCCCeEEEEeCCcC--HHHHHHHhcCCCEE-EECCCccc---ceeEEec
Confidence 33322 23578999999997 46788887766653 33322222 2222222
Q ss_pred cch------hhHHHHHHHHHH---cCCCCCEEEEEcccchHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHHhCC
Q psy6409 982 LSE------QDKRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGG 1049 (1832)
Q Consensus 982 ~~~------~~k~~~L~~~l~---~~~~~~vIVFv~s~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~il~~F~~G 1049 (1832)
... .+....+...+. ....+.+|||++++.+++.+++.|...+ +.+.++||+|++++|..++..+ +
T Consensus 252 ~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~ 329 (1283)
T TIGR01967 252 LVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--S 329 (1283)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--C
Confidence 211 123333333322 2355789999999999999999998775 4588999999999999997764 3
Q ss_pred CCcEEEecccccccCCCcCcCEEEEcCCC------------------CCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1050 SKDILVATDVAGRGIDIKDVSMVINYDMA------------------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1050 ~~~VLVaTdv~~rGlDip~v~~VI~~d~p------------------~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
..+||||||++++|||||+|.+||+++++ .|.++|+||.|||||.| .|.||.|++.++
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 47999999999999999999999999954 36789999999999998 799999999875
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=283.93 Aligned_cols=397 Identities=22% Similarity=0.267 Sum_probs=285.5
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 732 EASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 732 ~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
+++.+....+.|++ +..++.+|.|..+|.+.+.|.|++++.|||.||++||.||+|. ....+||
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------------adg~alv 139 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------------ADGFALV 139 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------------cCCceEe
Confidence 34455577777765 5778899999999999999999999999999999999999983 2456999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH---HH-h--cCCceeecCHHHHHHH---HH--ccccccCC
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL-R--LGCEIVIATPGRLIDV---LE--NRYLVLNQ 879 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l-~--~~~~IlV~TP~rL~d~---l~--~~~~~l~~ 879 (1832)
++|...|+..+.-.++.+ ||....+....+.++... .+ . ....+++.||+++... +. .+.+....
T Consensus 140 i~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred echhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 999999998887777775 666555655555433221 11 1 2357899999988532 21 23446677
Q ss_pred ceeEEEecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 880 CTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
+.+|-+||+|+-.+|| |+|++..+--. ....+...+++++||.++.+..-++..+
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~il-----------------------krqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGIL-----------------------KRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHH-----------------------HHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 8999999999999998 88887764211 1112346799999999888777666665
Q ss_pred CCCcEEEE-cccCCCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 958 RRPATVYI-GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035 (1832)
Q Consensus 958 ~~p~~v~~-~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~ 1035 (1832)
.-...+.+ .....++..++-.-..-++++-.+.+..+++.. .+...||||-+++.|+.++..|+.+|+.+..+|+.|.
T Consensus 273 ~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le 352 (695)
T KOG0353|consen 273 CIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE 352 (695)
T ss_pred hHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC
Confidence 43322222 223333322221112224455566666666643 4556899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHH-----------------------------
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH----------------------------- 1086 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQ----------------------------- 1086 (1832)
+.++.-+-+.+-.|++.|+|||-.+++|||-|+|.+|||..+|+|++.|.|
T Consensus 353 p~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilev 432 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEV 432 (695)
T ss_pred ccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhh
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred --------------HhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCcccccccccccccccccCCchhHHHHHHh
Q psy6409 1087 --------------RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1152 (1832)
Q Consensus 1087 --------------r~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 1152 (1832)
..|||||.+.+..||+++.-.|......+.++-+..+ .+..+.+.++..........+.+-
T Consensus 433 ctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~-----q~ly~mv~y~~d~s~crrv~laeh 507 (695)
T KOG0353|consen 433 CTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQMENTGI-----QKLYEMVRYAADISKCRRVKLAEH 507 (695)
T ss_pred hccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHHhhhH-----HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8899999999999999999888666666555433221 122333444332222222233332
Q ss_pred hhcCCCCCCchhhcCCCcccCCCCcc
Q psy6409 1153 MISSPVSTCPPELLNHPDAQHKPGTV 1178 (1832)
Q Consensus 1153 l~~~~~~~~~~~l~~~~~~~~~~~~~ 1178 (1832)
..+. -.|....++|+.|.+-..+
T Consensus 508 fde~---w~~~~c~k~cd~c~~~n~f 530 (695)
T KOG0353|consen 508 FDEA---WEPEACNKMCDNCCKDNAF 530 (695)
T ss_pred HHhh---cCHHHHHHHhhhhccCccc
Confidence 2221 2355566777777665443
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=280.81 Aligned_cols=335 Identities=23% Similarity=0.318 Sum_probs=260.1
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1408 ASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
++.+......|++ +....++|.|.++|.+.+.|.+++++.|||.||++||.+|+|. ....+|||
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------------adg~alvi 140 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------------ADGFALVI 140 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------------cCCceEee
Confidence 4566777777775 5678899999999999999999999999999999999999984 35679999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hh---hcCCcEEEeCHHHHHHH---HHc--cccccCCc
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL---RLGCEIVIATPGRLIDV---LEN--RYLVLNQC 1555 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l---~~~~~IiVaTP~rl~~~---l~~--~~~~l~~v 1555 (1832)
+|...|+..+.-.++.+ |+....+....+.++... .+ .....++..||+++... +.. ..+....+
T Consensus 141 ~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred chhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999999888888876 555555655555443211 11 12357899999998632 211 23556778
Q ss_pred eeEEEccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC
Q psy6409 1556 TYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633 (1832)
Q Consensus 1556 ~llViDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~ 1633 (1832)
.+|-+||+|+..+|| |++.+..+-- +...-+...+++++||..+.+..-++..+.
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~i-----------------------lkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGI-----------------------LKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHH-----------------------HHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 999999999999998 7777665421 111224467999999999888776666654
Q ss_pred CCcEEE-EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 1634 RPATVY-IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1711 (1832)
Q Consensus 1634 ~p~~v~-i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~ 1711 (1832)
-...+. .....+++...+-.-.+.++.+-...+..+++.. .+...||||-|++.|+.++..|..+|+.+..+|+.|.+
T Consensus 274 ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep 353 (695)
T KOG0353|consen 274 IEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEP 353 (695)
T ss_pred HHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCc
Confidence 322222 2223333322222223344555666677777644 55678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH------------------------------
Q psy6409 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH------------------------------ 1761 (1832)
Q Consensus 1712 ~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ------------------------------ 1761 (1832)
.++..+-+.|..|+++|+|||-.++.|||-|+|.+|||..+|.|+++|.|
T Consensus 354 ~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevc 433 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVC 433 (695)
T ss_pred cccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred -------------HhcccccCCCccEEEEEeeCCCh
Q psy6409 1762 -------------RIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1762 -------------RiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
..|||||.|.++.|++|+.=.|.
T Consensus 434 tnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 434 TNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred ccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 78999999999999999886553
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=316.16 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=219.6
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQ-N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~-g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
..++|||.+|+..++. | +..++++|||+|||++.+..+.. + +..+|||||+.+|+.|+.+.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 3789999999999884 3 47899999999999998765542 1 345999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc--------cccccCCceeEEEccchhhhcCCCh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--------RYLVLNQCTYIVLDEADRMIDMGFE 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~--------~~~~l~~v~llViDEaH~ll~~gf~ 1572 (1832)
.+++......+..++|+.... ......|+|+|.+.+.....+ ..+.-..+++||+||||++..
T Consensus 319 ~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---- 389 (732)
T TIGR00603 319 KMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---- 389 (732)
T ss_pred HHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----
Confidence 998654445566666653221 122468999999877533221 112235789999999998853
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH-HHhcCCCcEEEEcccCCC-Cc--
Q psy6409 1573 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSVGKP-TE-- 1648 (1832)
Q Consensus 1573 ~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~-~~~l~~p~~v~i~~~~~~-~~-- 1648 (1832)
+.+..++..+. ....+++|||+........ -.++..|..+...-.... ..
T Consensus 390 ~~fr~il~~l~--------------------------a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~L 443 (732)
T TIGR00603 390 AMFRRVLTIVQ--------------------------AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFI 443 (732)
T ss_pred HHHHHHHHhcC--------------------------cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCcc
Confidence 44555555443 1246999999864322111 112223333222111000 00
Q ss_pred -ceE--EEEEE---------------------cchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1649 -RIE--QIVYI---------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1649 -~i~--q~~~~---------------------~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
.+. ..... .....|...+..++..+ ...++||||++..++..++..| ++
T Consensus 444 A~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~ 518 (732)
T TIGR00603 444 ANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GK 518 (732)
T ss_pred ccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CC
Confidence 000 00111 12233455555566544 6679999999999999998877 35
Q ss_pred EEEcCCCCHHHHHHHHHHhhCC-CCcEEEEcccccccCCCCCCCEEEEeCCC-CCHHHHHHHhcccccCCCccEE-----
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLA----- 1775 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g-~~~VLVATdvl~~GIDip~v~~VI~~d~P-~s~~~yiQRiGRaGR~g~~G~a----- 1775 (1832)
..+||.+++.+|..+++.|++| .+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 519 ~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A 598 (732)
T TIGR00603 519 PFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNA 598 (732)
T ss_pred ceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccc
Confidence 6799999999999999999875 88999999999999999999999999998 5999999999999998766554
Q ss_pred --EEEeeCCChhHHHHHH
Q psy6409 1776 --VSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1776 --i~~~~~~d~~~~~~l~ 1791 (1832)
++|++.+..+.++.-+
T Consensus 599 ~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 599 FFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred eEEEEecCCchHHHHHHH
Confidence 8899998766655443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=316.11 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHHHc-C--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ-N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~-g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
..++|||.+|+..++. | +..|+++|||+|||++++..+.. + +..+|||||+.+|+.|+.+.|
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 4689999999999884 3 47899999999999998765431 1 345999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--------ccccCCceeEEEecchhhhcCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--------YLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--------~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.++.......+..++|+.... ......|+|+|++++.....+. .+.-..+++||+||||++..
T Consensus 319 ~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---- 389 (732)
T TIGR00603 319 KMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---- 389 (732)
T ss_pred HHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----
Confidence 998654455666777654321 1224789999999875322211 12235789999999998853
Q ss_pred HHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH-HHhcCCCcEEEEccc-----C-C
Q psy6409 898 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSV-----G-K 970 (1832)
Q Consensus 898 ~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~-~~~l~~p~~v~~~~~-----~-~ 970 (1832)
+.+..++..+. ....+++|||+...-.... -.++-.|..+...-. + .
T Consensus 390 ~~fr~il~~l~--------------------------a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~L 443 (732)
T TIGR00603 390 AMFRRVLTIVQ--------------------------AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFI 443 (732)
T ss_pred HHHHHHHHhcC--------------------------cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCcc
Confidence 44444554442 1246999999853211110 011222322221110 0 0
Q ss_pred CCcceEEE---------------------EEEcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 971 PTERIEQI---------------------VYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 971 ~~~~i~q~---------------------~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
....+... ........|+..+..++..+ .+.++||||++...+..++..| ++
T Consensus 444 A~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~ 518 (732)
T TIGR00603 444 ANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GK 518 (732)
T ss_pred ccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CC
Confidence 00000000 00112234555555566543 6679999999999988888877 25
Q ss_pred EEEcCCCCHHHHHHHHHHHhCC-CCcEEEecccccccCCCcCcCEEEEcCCC-CCHhHHHHHhcccccCCCCcEE-----
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLA----- 1100 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G-~~~VLVaTdv~~rGlDip~v~~VI~~d~p-~s~~~yvQr~GRaGR~g~~G~a----- 1100 (1832)
..+||++++.+|..+++.|+.| .+++||+|+++++|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 519 ~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A 598 (732)
T TIGR00603 519 PFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNA 598 (732)
T ss_pred ceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccc
Confidence 6799999999999999999875 88999999999999999999999999998 5999999999999999877765
Q ss_pred --EEEecCCCchHHH
Q psy6409 1101 --VSFCTKDDSHLFY 1113 (1832)
Q Consensus 1101 --i~~~~~~d~~~~~ 1113 (1832)
++|++.+......
T Consensus 599 ~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 599 FFYSLVSKDTQEMYY 613 (732)
T ss_pred eEEEEecCCchHHHH
Confidence 8999988655443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-29 Score=299.81 Aligned_cols=308 Identities=18% Similarity=0.221 Sum_probs=247.0
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCCCC
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 834 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~~i 834 (1832)
.+.+..+.+++-+||+|+||||||+ .+|-+. .+. .....| ++.|..|+|..|..++++.. +++..+|-
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL--~ea------G~~~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYL--AEA------GFASSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHH--Hhc------ccccCC-cEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 3555666677889999999999999 666543 221 112233 49999999999998777654 44445555
Q ss_pred eEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914 (1832)
Q Consensus 835 ~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~ 914 (1832)
.|++.+--.+.. ...+.|.++|.|+|++.+.... .|+++++||||||| .
T Consensus 126 ~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAH------------------------E 174 (674)
T KOG0922|consen 126 EVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAH------------------------E 174 (674)
T ss_pred eeeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechh------------------------h
Confidence 555544433322 2368899999999999888766 69999999999999 5
Q ss_pred CCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHH
Q psy6409 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 994 (1832)
Q Consensus 915 ~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~ 994 (1832)
++.+++.+.++++.....+....+|++|||+. .+.|..+|...|+....|...+....+.+......-.+.+..++++
T Consensus 175 Rsl~TDiLlGlLKki~~~R~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~I 252 (674)
T KOG0922|consen 175 RSLHTDILLGLLKKILKKRPDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQI 252 (674)
T ss_pred hhhHHHHHHHHHHHHHhcCCCceEEEEeeeec--HHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHH
Confidence 66788999999999999999999999999995 7788888888788777776655444333333334456677888888
Q ss_pred HHcCCCCCEEEEEcccchHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 995 LNRGVKKPVIIFVNQKKGADVLAKGLEKL----GY----NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 995 l~~~~~~~vIVFv~s~~~~~~l~~~L~~~----g~----~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
+...+++.+|||.+++++++.+++.|.+. +- -+.++||.|+.+++..+++....|..+|++||++++..|.|
T Consensus 253 h~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 253 HLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEe
Confidence 88888899999999999999999999765 11 25789999999999999999999999999999999999999
Q ss_pred cCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1067 KDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1067 p~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
|+|.+||+-++ |.|.++..||.|||||.|. |+|+.+|+.++
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p-GkcyRLYte~~ 391 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP-GKCYRLYTESA 391 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC-ceEEEeeeHHH
Confidence 99999997666 5689999999999999985 99999999886
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=324.97 Aligned_cols=297 Identities=23% Similarity=0.356 Sum_probs=210.9
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC----cHHHHHHHHHHHHH-hcCC
Q psy6409 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP----TRELAQQIEEETNK-FGTP 1506 (1832)
Q Consensus 1432 ~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP----treLa~Qi~~~~~~-~~~~ 1506 (1832)
+.+..+..+..+|++|+||||||. .+|.+.+-.. ......+++..| +++||.++..++.. ++..
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g---------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG---------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC---------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 344455566678888999999999 5785432110 011224556667 67899999888875 4444
Q ss_pred CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch-hhhcCCChHHHHHHHHhCCCC
Q psy6409 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPDVQKILEYMPVT 1585 (1832)
Q Consensus 1507 ~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH-~ll~~gf~~~l~~Il~~l~~~ 1585 (1832)
.|+.+ ..+.+ ...+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... .+...++
T Consensus 150 VGY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL~-- 214 (1294)
T PRK11131 150 VGYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILG--YLKELLP-- 214 (1294)
T ss_pred eceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHH--HHHHhhh--
Confidence 34322 11111 23468999999999999988654 49999999999999 6888887643 1222222
Q ss_pred CCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch------
Q psy6409 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE------ 1659 (1832)
Q Consensus 1586 ~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~------ 1659 (1832)
..+..|+|+||||++. +.+...+.+.| .+.+..... .+...+.....
T Consensus 215 ---------------------~rpdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~ 267 (1294)
T PRK11131 215 ---------------------RRPDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEADDTE 267 (1294)
T ss_pred ---------------------cCCCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCccc---cceEEEeecccccchhh
Confidence 1134689999999975 45666555555 344443222 24444444422
Q ss_pred hhHHHHHHHHHH---hCCCCcEEEEECchhHHHHHHHHHHHcCCc---EEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1660 QDKRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLGYN---ACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1660 ~~k~~~l~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~---v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
.+....++..+. ....+.+||||++...++.++..|...+++ +..+||+|++.+|..+++. .|..+|||||+
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc
Confidence 122333333322 235678999999999999999999988765 6789999999999999886 58899999999
Q ss_pred cccccCCCCCCCEEEEeCC---------------C---CCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1734 VAGRGIDIKDVSMVINYDM---------------A---KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~---------------P---~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
++++|||||+|.+||++++ | .|.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 346 IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 9999999999999999863 3 4668999999999999 68999999998654
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=309.65 Aligned_cols=320 Identities=21% Similarity=0.244 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~g---rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
.||++|.+++..+..+ +++++.|+||||||.+|+.++...+. .|.++|||+||++|+.|+.+.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------------~g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------------QGKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 6899999999999974 78999999999999999988876542 36789999999999999999998
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHH---HHh-cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCC-hH--H
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGF---RLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF-EP--D 899 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~---~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf-~~--~ 899 (1832)
+. +|..+..++|+.+..+... .+. ..++|+|+||+.+. ..+.++++|||||+|...-... .+ .
T Consensus 212 ~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 212 AR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 75 3678999999988655433 233 34799999998873 4578899999999996542210 00 1
Q ss_pred HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE
Q psy6409 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979 (1832)
Q Consensus 900 i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~ 979 (1832)
...+ ..........+++++|||.+......+.. .....+.+...........-.+
T Consensus 282 ~r~v-----------------------a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~ 336 (679)
T PRK05580 282 ARDL-----------------------AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEI 336 (679)
T ss_pred HHHH-----------------------HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEE
Confidence 1111 11112234579999999976444333221 1111122211110000011111
Q ss_pred EEcchhhH-------HHHHHHHHHc--CCCCCEEEEEcccc---------------------------------------
Q psy6409 980 YILSEQDK-------RKKLMEVLNR--GVKKPVIIFVNQKK--------------------------------------- 1011 (1832)
Q Consensus 980 ~~~~~~~k-------~~~L~~~l~~--~~~~~vIVFv~s~~--------------------------------------- 1011 (1832)
.......+ -..+++.+.. ..+.++|||+|++.
T Consensus 337 id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 416 (679)
T PRK05580 337 IDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGY 416 (679)
T ss_pred EechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcC
Confidence 11111000 0223333322 24557999988531
Q ss_pred ---------------------hHHHHHHHHHHc--CCcEEEEcCCCCH--HHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 1012 ---------------------GADVLAKGLEKL--GYNACTLHGGKGQ--EQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 1012 ---------------------~~~~l~~~L~~~--g~~v~~lhg~~~~--~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
.++.+++.|... +.++..+|+++.+ .+++.+++.|++|+++|||+|+++++|+|+
T Consensus 417 ~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 417 QEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDF 496 (679)
T ss_pred CCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCC
Confidence 466788888876 7889999999874 679999999999999999999999999999
Q ss_pred cCcCEEEEc--CCCCC----------HhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1067 KDVSMVINY--DMAKS----------IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1067 p~v~~VI~~--d~p~s----------~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
|+|++|+.+ |.+.+ ...|+|++|||||.+..|.+++.....+...+..+.
T Consensus 497 p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 497 PNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred CCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 999999644 44432 367999999999999999999888777655555543
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=291.11 Aligned_cols=330 Identities=21% Similarity=0.289 Sum_probs=251.5
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1418 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1418 l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
...++| .|-++|.+||-.+..|..|++.|+|.+|||+++..+|... ...+.+++|.+|-++|-+|-+
T Consensus 291 a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala------------q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 291 ALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA------------QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH------------HhhccceEecchhhhhccchH
Confidence 345677 7999999999999999999999999999999998887632 235788999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
+.|+.-+...| .++|++.... .+.++|+|.+.|-++|.++.-.+.++.+|||||+|.+.+...+-.++.
T Consensus 358 RDFk~tF~Dvg----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEE 426 (1248)
T KOG0947|consen 358 RDFKETFGDVG----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEE 426 (1248)
T ss_pred HHHHHhccccc----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccccccee
Confidence 99988665444 7899887543 578999999999999999888899999999999999999888888998
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 1657 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~ 1657 (1832)
++-.+| ...++|++|||.|+..+..-|-.-.+...+++.+....+-.++++++.-
T Consensus 427 ViIMlP-------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~ 481 (1248)
T KOG0947|consen 427 VIIMLP-------------------------RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK 481 (1248)
T ss_pred eeeecc-------------------------ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec
Confidence 888777 5679999999999987754443333333444443322222233222110
Q ss_pred ch---------------------------------------------------------------hhHH--HHHHHHHHh
Q psy6409 1658 SE---------------------------------------------------------------QDKR--KKLMEVLNR 1672 (1832)
Q Consensus 1658 ~~---------------------------------------------------------------~~k~--~~l~~~l~~ 1672 (1832)
.+ ..+. ....+++++
T Consensus 482 ~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~ 561 (1248)
T KOG0947|consen 482 KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINH 561 (1248)
T ss_pred cceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHH
Confidence 00 0011 123344433
Q ss_pred ---CCCCcEEEEECchhHHHHHHHHHHHc---------------------------------------CCcEEEEcCCCC
Q psy6409 1673 ---GVKKPVIIFVNQKKGADVLAKGLEKL---------------------------------------GYNACTLHGGKG 1710 (1832)
Q Consensus 1673 ---~~~~~vIVFv~s~~~a~~l~~~L~~~---------------------------------------~~~v~~lHg~ls 1710 (1832)
..--|+||||=|++.|+..+..|... ..++++||||+-
T Consensus 562 L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlL 641 (1248)
T KOG0947|consen 562 LRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLL 641 (1248)
T ss_pred HhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccch
Confidence 34458999999999999999998642 246889999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eCC----CCCHHHHHHHhcccccCC--CccEEEEEee
Q psy6409 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDM----AKSIEDYTHRIGRTGRAG--KEGLAVSFCT 1780 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d~----P~s~~~yiQRiGRaGR~g--~~G~ai~~~~ 1780 (1832)
+--++-|+..|..|-++||+||.+++.|||.|+-.+|+. .|- --.+-+|+||+|||||.| ..|.+++++.
T Consensus 642 PivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 642 PIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred HHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 999999999999999999999999999999998777774 111 014689999999999987 5688888887
Q ss_pred CCChhHHHHHHHHhhcC
Q psy6409 1781 KDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1781 ~~d~~~~~~l~~~l~~~ 1797 (1832)
.. ..-...+..+++..
T Consensus 722 ~~-vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 722 DS-VPSAATLKRLIMGG 737 (1248)
T ss_pred CC-CCCHHHHhhHhcCC
Confidence 76 23344455555444
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=297.09 Aligned_cols=311 Identities=21% Similarity=0.241 Sum_probs=213.9
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g---~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
.++++|.+++..+..+ +++++.|+||||||.+|+.++...+. .|..+|||+||++|+.|+++.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------------~g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------------QGKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 6899999999999974 78999999999999999988776553 26789999999999999999998
Q ss_pred HhcCCCCCeEEEEECCcchHHHH---HHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCC---hHH
Q psy6409 1502 KFGTPLGIRTVLVVGGLSREEQG---FRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF---EPD 1574 (1832)
Q Consensus 1502 ~~~~~~g~~v~~l~gg~~~~~~~---~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf---~~~ 1574 (1832)
+.+ |..++.++|+.+..+.. ..+. ..++|||+|++.+. ..+.++++|||||+|...-... ...
T Consensus 212 ~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 212 ARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 853 67789999998875443 2233 34799999998763 4578999999999996542211 001
Q ss_pred HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc--CCCCcceEE
Q psy6409 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV--GKPTERIEQ 1652 (1832)
Q Consensus 1575 l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~--~~~~~~i~q 1652 (1832)
...+.. ........+++++|||++......+.. .....+..... +.....+ .
T Consensus 282 ~r~va~-----------------------~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v-~ 335 (679)
T PRK05580 282 ARDLAV-----------------------VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV-E 335 (679)
T ss_pred HHHHHH-----------------------HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE-E
Confidence 111110 111224578999999987554333221 11111111111 0111111 1
Q ss_pred EEEEcchhh------HHHHHHHHHHhC--CCCcEEEEECchh--------------------------------------
Q psy6409 1653 IVYILSEQD------KRKKLMEVLNRG--VKKPVIIFVNQKK-------------------------------------- 1686 (1832)
Q Consensus 1653 ~~~~~~~~~------k~~~l~~~l~~~--~~~~vIVFv~s~~-------------------------------------- 1686 (1832)
.+....... --..+.+.+... .+.++|||+|++.
T Consensus 336 ~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 415 (679)
T PRK05580 336 IIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCG 415 (679)
T ss_pred EEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCc
Confidence 111100000 012233333322 3568999988631
Q ss_pred ----------------------HHHHHHHHHHHc--CCcEEEEcCCCCH--HHHHHHHHHhhCCCCcEEEEcccccccCC
Q psy6409 1687 ----------------------GADVLAKGLEKL--GYNACTLHGGKGQ--EQRELALNSLKGGSKDILVATDVAGRGID 1740 (1832)
Q Consensus 1687 ----------------------~a~~l~~~L~~~--~~~v~~lHg~ls~--~~R~~il~~F~~g~~~VLVATdvl~~GID 1740 (1832)
.++.+++.|... +.++..+|+++++ .+++.+++.|++|+++|||+|+++++|+|
T Consensus 416 ~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d 495 (679)
T PRK05580 416 YQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHD 495 (679)
T ss_pred CCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCC
Confidence 456777777776 7889999999874 67899999999999999999999999999
Q ss_pred CCCCCEEEEe--CCCCC----------HHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1741 IKDVSMVINY--DMAKS----------IEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1741 ip~v~~VI~~--d~P~s----------~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|+|++|+.+ |.+.+ ...|+|++|||||.+..|.+++.....+
T Consensus 496 ~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 496 FPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred CCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9999999655 44432 3679999999999999999998766544
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=269.60 Aligned_cols=190 Identities=51% Similarity=0.828 Sum_probs=174.7
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||..|++.|++||+.++.|+|++++||||+|||++|++|++..+.... ...+|.+|||+||++|+.|+.
T Consensus 14 l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~viii~p~~~L~~q~~ 86 (203)
T cd00268 14 IYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQALILAPTRELALQIA 86 (203)
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEEEEcCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999998876532 135789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
..++.+....++...+++||.+.......+..+++|+|+||++|.+++.++...+.+++++|+||||.|.++||...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~ 166 (203)
T cd00268 87 EVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIRE 166 (203)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHH
Confidence 99999998889999999999999888888888999999999999999999888999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
++..++. .
T Consensus 167 ~~~~l~~------------------------------------------------------------------------~ 174 (203)
T cd00268 167 ILKLLPK------------------------------------------------------------------------D 174 (203)
T ss_pred HHHhCCc------------------------------------------------------------------------c
Confidence 9887751 3
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEE
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVY 270 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1832)
+|+|+||||+|+.+..++..|+++|+.|+
T Consensus 175 ~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 203 (203)
T cd00268 175 RQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred cEEEEEeccCCHHHHHHHHHHCCCCEEeC
Confidence 89999999999999999999999999873
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=277.36 Aligned_cols=330 Identities=23% Similarity=0.325 Sum_probs=244.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
.+.+.+..+.| ++|..|.+++.-|... .+=++++..|||||++++++|+..+. .|..+..+
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------------~G~Q~ALM 317 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------------AGYQAALM 317 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------------cCCeeEEe
Confidence 44566678899 8999999999999854 35699999999999999999998763 48899999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
|||--||.|.+..+.+++.++|++|..++|........ ..+.+| .+|||+|- .|....+.++++.++|+||
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEec
Confidence 99999999999999999999999999999987755433 344555 89999994 4555667899999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccC-cceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK-YRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
-|+..- .=+..+. .... .+.+++||||+-|....+.. +.+-..-.+.
T Consensus 393 QHRFGV-----~QR~~L~-------------------------~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldvS~Id 440 (677)
T COG1200 393 QHRFGV-----HQRLALR-------------------------EKGEQNPHVLVMTATPIPRTLALTA--FGDLDVSIID 440 (677)
T ss_pred cccccH-----HHHHHHH-------------------------HhCCCCCcEEEEeCCCchHHHHHHH--hccccchhhc
Confidence 998631 1111111 1112 46799999998766544332 2222211111
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchh--------HHHHHHHHHHHc--CCcEEEEcCCC
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKK--------GADVLAKGLEKL--GYNACTLHGGK 1709 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~--------~a~~l~~~L~~~--~~~v~~lHg~l 1709 (1832)
........|...+.. ..+...+++.+... .+.++.+.|+-++ .|..++..|... ++.++.+||.|
T Consensus 441 ElP~GRkpI~T~~i~---~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm 517 (677)
T COG1200 441 ELPPGRKPITTVVIP---HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRM 517 (677)
T ss_pred cCCCCCCceEEEEec---cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCC
Confidence 111111223322222 23344444444332 5678999998754 456677777753 56799999999
Q ss_pred CHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1710 s~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
+++++..+++.|++|+++|||||+|.+.|||+|+.++.|.+|.-. -.++..|-.||+||.+..+.|++++.+.....-+
T Consensus 518 ~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~ 597 (677)
T COG1200 518 KPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAK 597 (677)
T ss_pred ChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHH
Confidence 999999999999999999999999999999999999999888643 6889999999999999999999999887644433
Q ss_pred HHHHHhh
Q psy6409 1789 DLKQMMI 1795 (1832)
Q Consensus 1789 ~l~~~l~ 1795 (1832)
.=...+.
T Consensus 598 ~RL~im~ 604 (677)
T COG1200 598 QRLKIMR 604 (677)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=276.51 Aligned_cols=318 Identities=24% Similarity=0.335 Sum_probs=241.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
+.+.+..+.| +||..|.+++..|... -+=+++|..|||||+++++.++..+ ..|.++..+|
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai------------~~G~Q~ALMA 318 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI------------EAGYQAALMA 318 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH------------HcCCeeEEec
Confidence 3445577888 7999999999999853 3569999999999999999999766 3588999999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH---HHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE---QGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~---~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||--||.|.+..+.+++.++|++|..++|...... ....+..| .+|||||- .|-...+.++++.++|+||-
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEecc
Confidence 99999999999999999999999999999876443 33445556 99999994 44455668899999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccc-cceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK-YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
||.. -.=+..+. .+.. +..+++||||.=|. .++-..+.+-..-.+..
T Consensus 394 HRFG-----V~QR~~L~-------------------------~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdE 441 (677)
T COG1200 394 HRFG-----VHQRLALR-------------------------EKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDE 441 (677)
T ss_pred cccc-----HHHHHHHH-------------------------HhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhcc
Confidence 9743 22222221 1122 46789999996443 34444444433333333
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch--------HHHHHHHHHHc--CCcEEEEcCCCC
Q psy6409 968 VGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG--------ADVLAKGLEKL--GYNACTLHGGKG 1035 (1832)
Q Consensus 968 ~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~--------~~~l~~~L~~~--g~~v~~lhg~~~ 1035 (1832)
.......|...+... .+...+++.+.. ..+.++.+.|+-.++ |..+++.|... +++++.+||.|+
T Consensus 442 lP~GRkpI~T~~i~~---~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 442 LPPGRKPITTVVIPH---ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred CCCCCCceEEEEecc---ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCC
Confidence 333333444443332 222233333222 256789999987654 55667777644 567999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
.+++..+++.|++|+++|||||.|.+.|||+|+.++.|.++.-+ ..++..|-.||+||.+..+.|++++.+..+
T Consensus 519 ~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 519 PAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred hHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999988755 889999999999999999999999998863
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=258.97 Aligned_cols=202 Identities=50% Similarity=0.817 Sum_probs=182.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEE
Q psy6409 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809 (1832)
Q Consensus 730 f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~L 809 (1832)
|+++++++.+++.+.+.||..|+++|.++++.+++|+|++++||||+|||++|++|++..+.... ...+++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~vi 73 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQAL 73 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEE
Confidence 78899999999999999999999999999999999999999999999999999999998775421 13578999
Q ss_pred EEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch
Q psy6409 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 810 ilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH 889 (1832)
|++||++|+.|+...+..+....++.+..++|+....+....+..+++|+|+||+.|.+++.+....+.+++++|+||||
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 99999999999999999998888999999999998777666666689999999999999998888888999999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 890 ~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
++.+.+|...+..++..++ ...|++++|||+++.+..++..++.+|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~l~-------------------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 154 RMLDMGFEDQIREILKLLP-------------------------KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HhhccChHHHHHHHHHhCC-------------------------cccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999888774 257999999999999999999999988765
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-27 Score=282.89 Aligned_cols=312 Identities=20% Similarity=0.275 Sum_probs=241.2
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+.| .+-|+|.+||.++-++..|++.|-|.+|||+++..+|...++. ..+|+|..|-++|-+|-|++
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~------------kQRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE------------KQRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh------------cCeEEeeChhhhhcchhHHH
Confidence 3455 6889999999999999999999999999999999998876654 67899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+..-++. |..++|+++.+. .+..+|+|.+.|-.++.++.-.+..+.+|||||+|.|-|...+-.++.-+
T Consensus 192 l~~EF~D----VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 192 LLEEFKD----VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred HHHHhcc----cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeE
Confidence 9875544 667899988653 57899999999999999998889999999999999998887776666655
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHH--hcCCCcEEEEcccCCCCcceEEEEEE-
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS--YLRRPATVYIGSVGKPTERIEQIVYI- 1656 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~--~l~~p~~v~i~~~~~~~~~i~q~~~~- 1656 (1832)
-.+| .+.+.+++|||+|++.+..-|- .-..|..+... +..+..++|++++
T Consensus 261 IllP-------------------------~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYT--dyRPTPLQHyifP~ 313 (1041)
T KOG0948|consen 261 ILLP-------------------------DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYT--DYRPTPLQHYIFPA 313 (1041)
T ss_pred Eecc-------------------------ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEee--cCCCCcceeeeecC
Confidence 5555 4578999999999997643332 23455554332 2223334444332
Q ss_pred --------cchh-----hHHH--------------------------------------HHHHHHHhCCCCcEEEEECch
Q psy6409 1657 --------LSEQ-----DKRK--------------------------------------KLMEVLNRGVKKPVIIFVNQK 1685 (1832)
Q Consensus 1657 --------~~~~-----~k~~--------------------------------------~l~~~l~~~~~~~vIVFv~s~ 1685 (1832)
+++. ++.. .+...+-.....|+|||+=|+
T Consensus 314 ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSk 393 (1041)
T KOG0948|consen 314 GGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSK 393 (1041)
T ss_pred CCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecH
Confidence 1111 1122 222222223345899999999
Q ss_pred hHHHHHHHHHHHc---------------------------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1686 KGADVLAKGLEKL---------------------------------------GYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1686 ~~a~~l~~~L~~~---------------------------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
+.|+.+|..+..+ ..++++||||+-+--++.|.-.|.+|-+
T Consensus 394 keCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLv 473 (1041)
T KOG0948|consen 394 KECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLV 473 (1041)
T ss_pred hHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHH
Confidence 9999999887543 2368899999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEE----eCCCC----CHHHHHHHhcccccCCC--ccEEEEEeeCC
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVIN----YDMAK----SIEDYTHRIGRTGRAGK--EGLAVSFCTKD 1782 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~----~d~P~----s~~~yiQRiGRaGR~g~--~G~ai~~~~~~ 1782 (1832)
+||+||.+++.|+|.|+-++|+- ||--. |--+|+||.|||||.|. .|.+|++++..
T Consensus 474 KvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 474 KVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 99999999999999998777763 33221 56789999999999874 58888888764
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=295.73 Aligned_cols=306 Identities=22% Similarity=0.281 Sum_probs=231.4
Q ss_pred HHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH-hcCCCCCeE
Q psy6409 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIRT 836 (1832)
Q Consensus 758 ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~-~~~~~~i~v 836 (1832)
.+.++.++.-+|++||||||||+ .+|.+.+ .. ....+.++.++.|.|--|..+++.+.. ++...|-.|
T Consensus 58 i~~ai~~~~vvii~getGsGKTT--qlP~~ll--e~-------g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTT--QLPQFLL--EE-------GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHH--HHHHHHH--hh-------hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 33344455669999999999999 5555422 11 113466899999999888887776654 444445445
Q ss_pred EEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCC
Q psy6409 837 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDT 916 (1832)
Q Consensus 837 ~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~ 916 (1832)
++-+-..+ .....+.|-|+|.|.|+..+.... .|+.+++|||||||. ++
T Consensus 127 GY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHE------------------------RS 175 (845)
T COG1643 127 GYSIRFES------KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHE------------------------RS 175 (845)
T ss_pred eEEEEeec------cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhh------------------------hh
Confidence 54444333 223468999999999999998876 599999999999993 34
Q ss_pred chhHHHHHHHHhhccccc-cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHH
Q psy6409 917 EDAEDENKLLANYNSKKK-YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEV 994 (1832)
Q Consensus 917 ~~~~~~~~ll~~~~~~~~-~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~ 994 (1832)
.+++...+++..+..... +..+|++|||+. .++|...|.+.|+....+..+.....+........ -...+...+.+
T Consensus 176 l~tDilLgllk~~~~~rr~DLKiIimSATld--~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~ 253 (845)
T COG1643 176 LNTDILLGLLKDLLARRRDDLKLIIMSATLD--AERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDI 253 (845)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEecccC--HHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHH
Confidence 566677777777555554 699999999995 67788777777776666655443322211111111 23444555555
Q ss_pred HHcCCCCCEEEEEcccchHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC
Q psy6409 995 LNRGVKKPVIIFVNQKKGADVLAKGLEK----LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070 (1832)
Q Consensus 995 l~~~~~~~vIVFv~s~~~~~~l~~~L~~----~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~ 1070 (1832)
+.....+.+|||.+...+++.+++.|.. ..+.++++||.|+.+++..+|+.-..|..+|++||++|+.+|.||+|.
T Consensus 254 ~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 254 HLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred hccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 5556788999999999999999999997 347899999999999999999999999889999999999999999999
Q ss_pred EEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1071 MVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1071 ~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
+||+-+. |.|.++..||.|||||.+. |.|+.+++.++
T Consensus 334 ~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p-GicyRLyse~~ 388 (845)
T COG1643 334 YVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP-GICYRLYSEED 388 (845)
T ss_pred EEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC-ceEEEecCHHH
Confidence 9997665 5588999999999999985 99999999864
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=284.99 Aligned_cols=342 Identities=20% Similarity=0.247 Sum_probs=240.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++..|+ |+.++||+|||++|++|++..+. .|..++||+||++||.|.++.+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al------------~G~~V~VvTpn~yLA~qd~e~m 143 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAI------------SGRGVHIVTVNDYLAKRDSQWM 143 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHh------------cCCCEEEEcCCHHHHHHHHHHH
Confidence 454 67888877766666665 99999999999999999996542 2456999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc-ccc-----CCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-LVL-----NQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~-~~l-----~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|+++++++||.+...+...+ .++|+||||++| .|+|..+. +.+ ..+.++||||||.|+ |..
T Consensus 144 ~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 144 KPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred HHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 999999999999999999877664443 699999999999 89987763 333 589999999999875 211
Q ss_pred -------------ChHHHHHHHHhCCCC--------C-C--CC----CCch-hHHHHHHH--------------------
Q psy6409 896 -------------FEPDVQKILEYMPVT--------N-L--KP----DTED-AEDENKLL-------------------- 926 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~--------~-~--~~----~~~~-~~~~~~ll-------------------- 926 (1832)
....+..++..+... . . .. -++. ......++
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 111122222222110 0 0 00 0000 00000000
Q ss_pred --------Hhhccc-------------------------------------------------------------cccce
Q psy6409 927 --------ANYNSK-------------------------------------------------------------KKYRQ 937 (1832)
Q Consensus 927 --------~~~~~~-------------------------------------------------------------~~~~q 937 (1832)
+..... +-+..
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 000000 01113
Q ss_pred EEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHH
Q psy6409 938 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGAD 1014 (1832)
Q Consensus 938 ~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~ 1014 (1832)
+.++|+|.......|...|--+ +..-+...|...... -..+.....|...+.+.+.. ..+.|+||||+|+..++
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLE---VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCC---EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 3344555444444444444221 222222333322221 23445567777777766533 46779999999999999
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcC--------------------------
Q psy6409 1015 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD-------------------------- 1068 (1832)
Q Consensus 1015 ~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~-------------------------- 1068 (1832)
.++..|...|+++.++||.+.+.++..+.+.|+.|. |+||||+|+||+||.=
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999851
Q ss_pred ------------cCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1069 ------------VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1069 ------------v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
==+||--..+.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12788777788888889999999999999999999998873
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=279.93 Aligned_cols=323 Identities=21% Similarity=0.284 Sum_probs=245.2
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.++| +|-.+|++||-.+..|..|+|.|+|.+|||+++-.+|... ...+.+++|.+|-++|-+|-++.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala------------q~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA------------QKHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH------------HhhccceEecchhhhhccchHHH
Confidence 3456 6889999999999999999999999999999987766432 23578999999999999998888
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il 904 (1832)
|+.-....| .++|+... ...+.++|+|.+.|-.+|-++.-.+.++.+|||||+|.+.|..++-+++.++
T Consensus 360 Fk~tF~Dvg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 360 FKETFGDVG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred HHHhccccc----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeee
Confidence 887644433 78888774 3468899999999999998888889999999999999999999999999998
Q ss_pred HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc-CCCcEEEEcccCCCCcceEEEEEEcc
Q psy6409 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATVYIGSVGKPTERIEQIVYILS 983 (1832)
Q Consensus 905 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l-~~p~~v~~~~~~~~~~~i~q~~~~~~ 983 (1832)
-.+| ...++|++|||.|+..+ |+.... .....+++.+....+..++++++.-.
T Consensus 429 IMlP-------------------------~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~ 482 (1248)
T KOG0947|consen 429 IMLP-------------------------RHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKK 482 (1248)
T ss_pred eecc-------------------------ccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEecc
Confidence 8887 34799999999999776 554432 22333444444333333443332110
Q ss_pred h---------------------------------------------------------------hhH-----HHHHHHHH
Q psy6409 984 E---------------------------------------------------------------QDK-----RKKLMEVL 995 (1832)
Q Consensus 984 ~---------------------------------------------------------------~~k-----~~~L~~~l 995 (1832)
+ .++ ...++..|
T Consensus 483 ~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L 562 (1248)
T KOG0947|consen 483 SLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL 562 (1248)
T ss_pred ceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHH
Confidence 0 000 11222233
Q ss_pred HcCCCCCEEEEEcccchHHHHHHHHHHc---------------------------------------CCcEEEEcCCCCH
Q psy6409 996 NRGVKKPVIIFVNQKKGADVLAKGLEKL---------------------------------------GYNACTLHGGKGQ 1036 (1832)
Q Consensus 996 ~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------------------------------------g~~v~~lhg~~~~ 1036 (1832)
....--|+||||-+++.|+..++.|... .-++++||||+-+
T Consensus 563 ~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLP 642 (1248)
T KOG0947|consen 563 RKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLP 642 (1248)
T ss_pred hhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchH
Confidence 3334458999999999999999999432 1247899999999
Q ss_pred HHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC--------CCCHhHHHHHhcccccCCCC--cEEEEEecC
Q psy6409 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AKSIEDYTHRIGRTGRAGKE--GLAVSFCTK 1106 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~--------p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~ 1106 (1832)
--.+-+.-.|..|-++||+||.++++|||.|+-++|+.-=. --.+-.|+|++|||||-|-+ |++|+++..
T Consensus 643 ivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 643 IVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 99999999999999999999999999999999888873211 12678999999999998855 888887776
Q ss_pred CCchHHHHHHHH
Q psy6409 1107 DDSHLFYDLKQM 1118 (1832)
Q Consensus 1107 ~d~~~~~~l~~~ 1118 (1832)
. ..-...+..+
T Consensus 723 ~-vp~~a~l~~l 733 (1248)
T KOG0947|consen 723 S-VPSAATLKRL 733 (1248)
T ss_pred C-CCCHHHHhhH
Confidence 5 2333444443
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=283.35 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=130.6
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 731 KEASLPTEILEIIE-----KIGYAEP---TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 731 ~~~~L~~~l~~~l~-----~~g~~~p---t~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
+.+++...+...+. ..||..| +|+|.+++|.++.++++|+.|+||+|||++|+||++..+..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 35668888887776 6899999 99999999999999999999999999999999999976532
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccccccC---
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRYLVLN--- 878 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~~~l~--- 878 (1832)
+..++||+||++||.|+++.+..+...+|+++++++||.+..++...+ +++|+||||++| .|++..+.+.++
T Consensus 135 --g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~ 210 (970)
T PRK12899 135 --GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEE 210 (970)
T ss_pred --cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHH
Confidence 223899999999999999999999999999999999999988876554 699999999999 999988766555
Q ss_pred ----CceeEEEecchhhhc
Q psy6409 879 ----QCTYIVLDEADRMID 893 (1832)
Q Consensus 879 ----~~~~lViDEaH~l~d 893 (1832)
.+.++||||||.|+-
T Consensus 211 ~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 211 QVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hhcccccEEEEechhhhhh
Confidence 458999999999763
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-26 Score=293.44 Aligned_cols=321 Identities=22% Similarity=0.284 Sum_probs=243.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
.....++| .|-++|.+|+.++-.|.+|+++||||||||+++..++...+. ++.+++|.+|.++|.+|
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------------~~qrviYTsPIKALsNQ 177 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------------DGQRVIYTSPIKALSNQ 177 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------------cCCceEeccchhhhhhh
Confidence 34456788 799999999999999999999999999999999998876553 36669999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
.+..+...+....--+..++|+.+.+. ++.++|+|.+.|-+++..+...+..+..|||||+|.|.+...+..+
T Consensus 178 Kyrdl~~~fgdv~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 178 KYRDLLAKFGDVADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred HHHHHHHHhhhhhhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhH
Confidence 999987654332222567889888653 6889999999999999998888999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc-CCCcEEEEcccCCCCcceEEEE
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATVYIGSVGKPTERIEQIV 1654 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l-~~p~~v~i~~~~~~~~~i~q~~ 1654 (1832)
+.++-.+| ...++++||||+|+..+.-.|... .......+....++.+ +.+++
T Consensus 251 EE~Ii~lP-------------------------~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP-L~~~~ 304 (1041)
T COG4581 251 EEVIILLP-------------------------DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP-LEHFV 304 (1041)
T ss_pred HHHHHhcC-------------------------CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC-eEEEE
Confidence 99998887 456899999999998664333322 1222222223333332 22222
Q ss_pred EE-------cchhhH-----------------------------------------------HHHHHHHHHhCCCCcEEE
Q psy6409 1655 YI-------LSEQDK-----------------------------------------------RKKLMEVLNRGVKKPVII 1680 (1832)
Q Consensus 1655 ~~-------~~~~~k-----------------------------------------------~~~l~~~l~~~~~~~vIV 1680 (1832)
+. +.+..+ ...+...+......|+|+
T Consensus 305 ~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~ 384 (1041)
T COG4581 305 YVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIV 384 (1041)
T ss_pred ecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEE
Confidence 11 111110 011222233334468999
Q ss_pred EECchhHHHHHHHHHHHc-----------------------------------------CCcEEEEcCCCCHHHHHHHHH
Q psy6409 1681 FVNQKKGADVLAKGLEKL-----------------------------------------GYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1681 Fv~s~~~a~~l~~~L~~~-----------------------------------------~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
||=|++.|+..+..+..+ ..++++||+||-+..+..+..
T Consensus 385 F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~ 464 (1041)
T COG4581 385 FSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEE 464 (1041)
T ss_pred EEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHH
Confidence 999999999888766421 124678999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEE----eC----CCCCHHHHHHHhcccccCCC--ccEEEEEeeCC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD----MAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKD 1782 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d----~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~ 1782 (1832)
.|..|-++||+||.+++.|+|.|.=++|+- +| ..-+...|+|+.|||||.|- .|.+++...+.
T Consensus 465 Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 465 LFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred HHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999999999999999997666652 22 13368999999999999885 48888775554
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=302.21 Aligned_cols=299 Identities=21% Similarity=0.292 Sum_probs=207.5
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEE
Q psy6409 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV 1512 (1832)
Q Consensus 1433 ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~ 1512 (1832)
.+..+..+..+|++|+||||||. .+|.+.+-.. ......+++..|.|--|..++..+.+. +|..+.
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~---------~~~~~~I~~tQPRRlAA~svA~RvA~e---lg~~lG 140 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTT--QLPKICLELG---------RGSHGLIGHTQPRRLAARTVAQRIAEE---LGTPLG 140 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC---------CCCCceEecCCccHHHHHHHHHHHHHH---hCCCcc
Confidence 44444456678999999999999 5676532110 112346777889887777666555442 233333
Q ss_pred EEECCc-chHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch-hhhcCCChHH-HHHHHHhCCCCCCCC
Q psy6409 1513 LVVGGL-SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPD-VQKILEYMPVTNLKP 1589 (1832)
Q Consensus 1513 ~l~gg~-~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH-~ll~~gf~~~-l~~Il~~l~~~~~~~ 1589 (1832)
..+|.. ..+.+ ...+..|+|+|+|.|+..+.... .+..+++||||||| ++++.+|.-. +..++...
T Consensus 141 ~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r------- 209 (1283)
T TIGR01967 141 EKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR------- 209 (1283)
T ss_pred eEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-------
Confidence 344432 11111 23467899999999999887654 48999999999999 6888776543 34443322
Q ss_pred CCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch------hhHH
Q psy6409 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE------QDKR 1663 (1832)
Q Consensus 1590 ~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~------~~k~ 1663 (1832)
...++|+||||+.. ..+...+...| .+.+.....+ +...+..... ....
T Consensus 210 -------------------pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~ 264 (1283)
T TIGR01967 210 -------------------PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRTYP---VEVRYRPLVEEQEDDDLDQL 264 (1283)
T ss_pred -------------------CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCccc---ceeEEecccccccchhhhHH
Confidence 24689999999974 45666555545 3444332222 3333333221 1233
Q ss_pred HHHHHHHHh---CCCCcEEEEECchhHHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccc
Q psy6409 1664 KKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737 (1832)
Q Consensus 1664 ~~l~~~l~~---~~~~~vIVFv~s~~~a~~l~~~L~~~~---~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~ 1737 (1832)
..++..+.. ...+.+|||+++...++.++..|...+ +.+..+||+|++++|..++..+ +..+|||||+++++
T Consensus 265 ~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEt 342 (1283)
T TIGR01967 265 EAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAET 342 (1283)
T ss_pred HHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHh
Confidence 333333322 245789999999999999999998764 4588899999999999986654 34689999999999
Q ss_pred cCCCCCCCEEEEeCCC------------------CCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1738 GIDIKDVSMVINYDMA------------------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P------------------~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||||+|.+||+++++ .|.++|+||+|||||.| .|.|+.|+++.+.
T Consensus 343 SLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 343 SLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 9999999999998854 36789999999999997 9999999997654
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=281.96 Aligned_cols=300 Identities=20% Similarity=0.273 Sum_probs=199.1
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH
Q psy6409 769 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848 (1832)
Q Consensus 769 Iv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~ 848 (1832)
++.||||||||.+|+..+...+ ..|.++|||+|+++|+.|+.+.|++. ++..+..++|+.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l------------~~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL------------ALGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH------------HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHH
Confidence 4689999999999977665433 13678999999999999999999875 36678889998876543
Q ss_pred ---HHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCC-hH--HHHHHHHhCCCCCCCCCCchhHH
Q psy6409 849 ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF-EP--DVQKILEYMPVTNLKPDTEDAED 921 (1832)
Q Consensus 849 ---~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf-~~--~i~~Il~~l~~~~~~~~~~~~~~ 921 (1832)
+..+.. .++|||||+..+. ..+.++++|||||+|...-++. .+ ....+
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~------------------ 120 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV------------------ 120 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHH------------------
Confidence 333333 4799999998772 3578899999999997653221 01 11111
Q ss_pred HHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhH----HHHHHHHHHc
Q psy6409 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK----RKKLMEVLNR 997 (1832)
Q Consensus 922 ~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k----~~~L~~~l~~ 997 (1832)
..+.......+++++|||.+. +.+....-.....+...............+.......+ -..|++.+..
T Consensus 121 -----a~~ra~~~~~~vil~SATPsl--es~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~ 193 (505)
T TIGR00595 121 -----AVYRAKKFNCPVVLGSATPSL--ESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQ 193 (505)
T ss_pred -----HHHHHHhcCCCEEEEeCCCCH--HHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHH
Confidence 111122245789999999553 33332211111111111111000111111111111110 1223333322
Q ss_pred --CCCCCEEEEEcccch------------------------------------------------------------HHH
Q psy6409 998 --GVKKPVIIFVNQKKG------------------------------------------------------------ADV 1015 (1832)
Q Consensus 998 --~~~~~vIVFv~s~~~------------------------------------------------------------~~~ 1015 (1832)
..+.++|||+|++.- ++.
T Consensus 194 ~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~ 273 (505)
T TIGR00595 194 TLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQ 273 (505)
T ss_pred HHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHH
Confidence 145689999887642 578
Q ss_pred HHHHHHHc--CCcEEEEcCCCCHHHH--HHHHHHHhCCCCcEEEecccccccCCCcCcCEEE--EcCC----CC------
Q psy6409 1016 LAKGLEKL--GYNACTLHGGKGQEQR--ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI--NYDM----AK------ 1079 (1832)
Q Consensus 1016 l~~~L~~~--g~~v~~lhg~~~~~~R--~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI--~~d~----p~------ 1079 (1832)
+.+.|... +.++..+|+++++..+ +.+++.|++|+++|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~ 353 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAER 353 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHH
Confidence 88888877 7889999999987766 8999999999999999999999999999999886 5554 31
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
....|+|++|||||.+..|.+++.+...+...+..+
T Consensus 354 ~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 354 GFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHH
Confidence 356799999999999999999977655554444443
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=283.67 Aligned_cols=342 Identities=23% Similarity=0.291 Sum_probs=253.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-..-++..|+ |+.+.||+|||++|.+|++.... .|..+-|++||..||.|.++.+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~IvTpn~yLA~rd~e~~ 142 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL------------TGKGVHVVTVNDYLAKRDAEWM 142 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH------------cCCCEEEEecCHHHHHHHHHHH
Confidence 465 78999998887777775 99999999999999999963321 2445779999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|+++++++|+++..++...+ .++|+|+||++| .|+|.... ..+..+.++||||||.|+ |..
T Consensus 143 ~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 143 GPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred HHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 999999999999999999987776554 599999999999 89987664 247789999999999865 211
Q ss_pred -------------ChHHHHHHHHhCCCC-----------------------------CCCC-------------------
Q psy6409 896 -------------FEPDVQKILEYMPVT-----------------------------NLKP------------------- 914 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~-----------------------------~~~~------------------- 914 (1832)
....+..++..+... ++..
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 112222333332110 0000
Q ss_pred --------------------------CCchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHH
Q psy6409 915 --------------------------DTEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 915 --------------------------~~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~ 950 (1832)
.....+.+...+..-+. .+.+..+.++|.|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 00000001111100000 0223467788999876666
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
.|...|--+ +..-+...+...... -..+.....|...+.+.+.. ..+.|+||||+|+..++.++..|...|+++
T Consensus 381 E~~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 381 EFREIYNLD---VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 666665432 222223333333332 23445677888888888855 567799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc--------------------------------------
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------- 1069 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v-------------------------------------- 1069 (1832)
..+||. +.+|+..+..|+.|...|+||||+|+||+||+=-
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 999995 8899999999999999999999999999999642
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1070 ~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
=+||-...|.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2888888899999999999999999999999999998874
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=289.07 Aligned_cols=311 Identities=19% Similarity=0.219 Sum_probs=201.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
...|+|+|..+......+..+|+.||||+|||.++++++...+.. .....++|..||+++++|++..+.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~----------~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ----------GLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCCeEEEECcHHHHHHHHHHHHHH
Confidence 348999999886554445678999999999999988776643321 2346899999999999999999876
Q ss_pred hcCCC--CCeEEEEECCcchHH-----------------------HHHH-hhc---CCcEEEeCHHHHHHHH-Hcccccc
Q psy6409 1503 FGTPL--GIRTVLVVGGLSREE-----------------------QGFR-LRL---GCEIVIATPGRLIDVL-ENRYLVL 1552 (1832)
Q Consensus 1503 ~~~~~--g~~v~~l~gg~~~~~-----------------------~~~~-l~~---~~~IiVaTP~rl~~~l-~~~~~~l 1552 (1832)
+.... ...+..++|...... +++. .++ -.+|+|||+..++..+ ..+...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 32211 245666666543211 1111 001 2689999998877443 3333333
Q ss_pred CCc----eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH
Q psy6409 1553 NQC----TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1553 ~~v----~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
..+ ++|||||+|.+ +.-....+..++.++.. ....+|++|||+|......+
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~------------------------~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ------------------------AGGSVILLSATLPATLKQKL 488 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 333 48999999954 32223334444444321 12458999999998876433
Q ss_pred -HHhcCC-C--------cEEEEcc--------cCCCC-cceEEEE--EEc--ch-hhHHHHHHHHHHh-CCCCcEEEEEC
Q psy6409 1629 -RSYLRR-P--------ATVYIGS--------VGKPT-ERIEQIV--YIL--SE-QDKRKKLMEVLNR-GVKKPVIIFVN 1683 (1832)
Q Consensus 1629 -~~~l~~-p--------~~v~i~~--------~~~~~-~~i~q~~--~~~--~~-~~k~~~l~~~l~~-~~~~~vIVFv~ 1683 (1832)
..|-.. + ....... ..... ......+ ... .. ......+..++.. ..++++|||||
T Consensus 489 ~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~N 568 (878)
T PRK09694 489 LDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICN 568 (878)
T ss_pred HHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEEC
Confidence 323111 0 0000000 00000 0001111 111 11 1111222222222 24678999999
Q ss_pred chhHHHHHHHHHHHcC---CcEEEEcCCCCHHHH----HHHHHHh-hCCC---CcEEEEcccccccCCCCCCCEEEEeCC
Q psy6409 1684 QKKGADVLAKGLEKLG---YNACTLHGGKGQEQR----ELALNSL-KGGS---KDILVATDVAGRGIDIKDVSMVINYDM 1752 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~---~~v~~lHg~ls~~~R----~~il~~F-~~g~---~~VLVATdvl~~GIDip~v~~VI~~d~ 1752 (1832)
|++.|..++..|...+ ..+..+||.++..+| ..+++.| ++|+ ..|||||+++++|||| +++++|....
T Consensus 569 TV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 569 LVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred CHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC
Confidence 9999999999999764 679999999999999 4577888 6776 4799999999999999 5899999988
Q ss_pred CCCHHHHHHHhcccccCCC
Q psy6409 1753 AKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1753 P~s~~~yiQRiGRaGR~g~ 1771 (1832)
| ++.|+||+||+||.+.
T Consensus 648 P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 648 P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred C--HHHHHHHHhccCCCCC
Confidence 8 8899999999999875
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=287.27 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHH-HHcCCcEEEEcCCCCHHHHHHHHHHhhCC--CCcEEEEcccccc
Q psy6409 1661 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATDVAGR 1737 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L-~~~~~~v~~lHg~ls~~~R~~il~~F~~g--~~~VLVATdvl~~ 1737 (1832)
.|...|.++++.....++||||+++.++..|+..| ...|+.+..+||+|++.+|..+++.|+++ .++|||||+++++
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 46667888888777889999999999999999999 46799999999999999999999999984 6999999999999
Q ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|+|++.+++|||||+|+|+..|+||+||+||.|+.+.+.+++.......-..+.++
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988777765543333333333
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=278.81 Aligned_cols=342 Identities=20% Similarity=0.248 Sum_probs=242.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--++..| -|+.++||+|||++|.+|++..... |..|+||+||++||.|.+.++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~------------G~~V~VvTpn~yLA~qd~e~m 143 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS------------GRGVHIVTVNDYLAKRDSQWM 143 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEcCCHHHHHHHHHHH
Confidence 465 6788887766555555 4999999999999999999965432 456999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc-ccc-----CCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-LVL-----NQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~-~~l-----~~v~llViDEaH~ll~~g--- 1570 (1832)
..+...+|+++.+++||.+...+.... .++|+|+||++| .++|+.+. +.+ ..+.++||||||.|+=+.
T Consensus 144 ~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 144 KPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred HHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 999999999999999998877664443 689999999999 89998763 333 589999999999865211
Q ss_pred -------------ChHHHHHHHHhCCCC-------CC------CCC--Cch-hhhHHH----------------------
Q psy6409 1571 -------------FEPDVQKILEYMPVT-------NL------KPD--TED-AEDENK---------------------- 1599 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~-------~~------~~~--~~~-~~~~~~---------------------- 1599 (1832)
....+..++..+... -+ +.. ++. ......
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 111222222222111 00 000 000 000000
Q ss_pred -------HHhhh--ccc----------------------------------------------------------cCcce
Q psy6409 1600 -------LLANY--NSK----------------------------------------------------------KKYRQ 1612 (1832)
Q Consensus 1600 -------l~~~~--~~~----------------------------------------------------------~~~~q 1612 (1832)
+.+.. ... +.+..
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 00000 000 00112
Q ss_pred EEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHH
Q psy6409 1613 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGAD 1689 (1832)
Q Consensus 1613 ~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~ 1689 (1832)
+.+||.|......++..-|--+ +...+...|...... -..+.....|..++.+.+.. ..+.|+||||+|+..++
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLE---VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCC---EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 3356666555555555544322 222233444433322 23445667777777776633 47789999999999999
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---------------------------
Q psy6409 1690 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK--------------------------- 1742 (1832)
Q Consensus 1690 ~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip--------------------------- 1742 (1832)
.++..|...|+++.++||.+.+.++..+.+.|+.|. |+|||++++||+||.
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 999999999999985
Q ss_pred -----------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1743 -----------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1743 -----------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.=-+||-...+.|..-=-|-.|||||-|.+|.+..|++=+|.
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 123788888888888889999999999999999999997764
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=279.15 Aligned_cols=291 Identities=22% Similarity=0.230 Sum_probs=203.2
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~----g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..|+|+|.+|+..+.. ++..++++|||+|||++++..+-.. +..+|||||+.+|+.|+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------------cCCEEEEECcHHHHHHHHHH
Confidence 3799999999999998 8899999999999999987766432 22399999999999999877
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+.++.... ..+..+.|+.... .. ..|+|+|.+.+...-....+....+++||||||||+....| ..+.
T Consensus 100 ~~~~~~~~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~ 167 (442)
T COG1061 100 LKKFLLLN-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRIL 167 (442)
T ss_pred HHHhcCCc-cccceecCceecc------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHH
Confidence 77764322 1233333333221 11 46999999988764211223344799999999999875544 3343
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcce-EEEEEccCChHHHHHHHH--hcCCCcEEEEcccCCCC----cceEE
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVERLARS--YLRRPATVYIGSVGKPT----ERIEQ 1652 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q-~v~~SATl~~~~~~~~~~--~l~~p~~v~i~~~~~~~----~~i~q 1652 (1832)
..+. ... .+++|||++......... .+..|..+.+....... .....
T Consensus 168 ~~~~--------------------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~ 221 (442)
T COG1061 168 ELLS--------------------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKY 221 (442)
T ss_pred Hhhh--------------------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEE
Confidence 3332 112 799999976332111111 11112222222110000 00000
Q ss_pred --EEE------------------------------------EcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHH
Q psy6409 1653 --IVY------------------------------------ILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAK 1693 (1832)
Q Consensus 1653 --~~~------------------------------------~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~ 1693 (1832)
... ......+...+..++..+ ...+++|||.+..++..++.
T Consensus 222 ~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~ 301 (442)
T COG1061 222 VEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAK 301 (442)
T ss_pred EEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHH
Confidence 000 001112223333444434 36799999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhccccc
Q psy6409 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768 (1832)
Q Consensus 1694 ~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR 1768 (1832)
.|...++ +..+.|..+..+|..+++.|+.|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|
T Consensus 302 ~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 302 LFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9988877 8899999999999999999999999999999999999999999999999999999999999999999
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=289.47 Aligned_cols=311 Identities=19% Similarity=0.221 Sum_probs=200.4
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
...|+|+|..+......+..+|+.||||+|||.++++.+...+. ......++|..||+++++|++.++.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~----------~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID----------QGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH----------hCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 45899999988655445667999999999999998887664321 12346899999999999999999886
Q ss_pred hcCCC--CCeEEEEEcCCchHHH-----------------------HHH-Hhc---CCceeecCHHHHHHHHH-cccccc
Q psy6409 828 FGTPL--GIRTVLVVGGLSREEQ-----------------------GFR-LRL---GCEIVIATPGRLIDVLE-NRYLVL 877 (1832)
Q Consensus 828 ~~~~~--~i~v~~~~Gg~~~~~~-----------------------~~~-l~~---~~~IlV~TP~rL~d~l~-~~~~~l 877 (1832)
+.... ...+...+|....... +.. ..+ -.+|+|||+..++..+. .+...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 43221 3456677776542211 110 001 27999999987764443 222222
Q ss_pred CCc----eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH-H
Q psy6409 878 NQC----TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER-L 952 (1832)
Q Consensus 878 ~~~----~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~-~ 952 (1832)
..+ ++|||||+|-+ +.-....+..++..+. . ....+|++|||+|..... +
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~----------------------~--~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA----------------------Q--AGGSVILLSATLPATLKQKL 488 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH----------------------h--cCCcEEEEeCCCCHHHHHHH
Confidence 322 58999999943 3222223333333221 1 124699999999987754 3
Q ss_pred HHHhcCC---------CcEEEEccc--------CCCC-cceEEEEE--Ec--ch-hhHHHHHHHHHHc-CCCCCEEEEEc
Q psy6409 953 ARSYLRR---------PATVYIGSV--------GKPT-ERIEQIVY--IL--SE-QDKRKKLMEVLNR-GVKKPVIIFVN 1008 (1832)
Q Consensus 953 ~~~~l~~---------p~~v~~~~~--------~~~~-~~i~q~~~--~~--~~-~~k~~~L~~~l~~-~~~~~vIVFv~ 1008 (1832)
...|-.. |........ .... ......+. .. .. ......+..++.. ..++++|||||
T Consensus 489 ~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~N 568 (878)
T PRK09694 489 LDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICN 568 (878)
T ss_pred HHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEEC
Confidence 3333211 110000000 0000 00111111 11 11 1111222222222 24678999999
Q ss_pred ccchHHHHHHHHHHcC---CcEEEEcCCCCHHHH----HHHHHHH-hCCC---CcEEEecccccccCCCcCcCEEEEcCC
Q psy6409 1009 QKKGADVLAKGLEKLG---YNACTLHGGKGQEQR----ELALNSL-KGGS---KDILVATDVAGRGIDIKDVSMVINYDM 1077 (1832)
Q Consensus 1009 s~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R----~~il~~F-~~G~---~~VLVaTdv~~rGlDip~v~~VI~~d~ 1077 (1832)
|++.|..+++.|...+ ..+..+||.++..+| +.+++.| ++|+ ..|||||+++++|||| +++++|...+
T Consensus 569 TV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 569 LVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred CHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC
Confidence 9999999999999765 679999999999999 4577888 7776 4799999999999999 5899999888
Q ss_pred CCCHhHHHHHhcccccCCC
Q psy6409 1078 AKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~ 1096 (1832)
| ++.|+||+||+||.+.
T Consensus 648 P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 648 P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred C--HHHHHHHHhccCCCCC
Confidence 8 6899999999999875
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=281.91 Aligned_cols=341 Identities=21% Similarity=0.304 Sum_probs=248.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|++.|.-+.-++..|+ |+.+.||+|||+++.+|++.... .|..+-|++||--||.|-+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al------------~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL------------TGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH------------cCCCeEEEeccHHHHHhhHHHH
Confidence 464 79999998887777776 99999999999999999986542 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|++|++++|+.+..+.... ..++|+++|..-+- |.|.... .....+.+.||||||.|+ |..
T Consensus 142 ~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeart 219 (796)
T PRK12906 142 GELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEART 219 (796)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCC
Confidence 99999999999999998876655433 36899999987764 3443321 234567899999999754 211
Q ss_pred -------------ChHHHHHHHHhCCCC----------------------------------------CCCCCCch----
Q psy6409 896 -------------FEPDVQKILEYMPVT----------------------------------------NLKPDTED---- 918 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~----------------------------------------~~~~~~~~---- 918 (1832)
+...+..++..+... +.. +...
T Consensus 220 PLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~-~~~~~~~~ 298 (796)
T PRK12906 220 PLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLY-DSENTALA 298 (796)
T ss_pred ceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCcccc-CchhhhHH
Confidence 111111222211100 000 0000
Q ss_pred h------------------------------------------HHHHHHHHhhc------------------cccccceE
Q psy6409 919 A------------------------------------------EDENKLLANYN------------------SKKKYRQT 938 (1832)
Q Consensus 919 ~------------------------------------------~~~~~ll~~~~------------------~~~~~~q~ 938 (1832)
. +.+...+..-+ -.+.+..+
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 0 00000110000 01224467
Q ss_pred EEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHH
Q psy6409 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADV 1015 (1832)
Q Consensus 939 v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~ 1015 (1832)
.++|.|.......|...|--+ +. .-+...+...... -..+.....|...+.+.+.. ..+.|+||||+|+..++.
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~l~-vv--~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYNME-VI--TIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSER 455 (796)
T ss_pred hccCCCCHHHHHHHHHHhCCC-EE--EcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 788999876666665555332 22 2222333322222 23445667788888887754 367899999999999999
Q ss_pred HHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC---cCcC-----EEEEcCCCCCHhHHHHH
Q psy6409 1016 LAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI---KDVS-----MVINYDMAKSIEDYTHR 1087 (1832)
Q Consensus 1016 l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi---p~v~-----~VI~~d~p~s~~~yvQr 1087 (1832)
++..|...|+++..+||.+.+.++..+...++.|. |+|||++|+||+|| ++|. +||+++.|.|...|.|+
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999999888888888888887 99999999999999 4899 99999999999999999
Q ss_pred hcccccCCCCcEEEEEecCCCc
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|||||.|.+|.+.+|++.+|.
T Consensus 534 ~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 534 RGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999873
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=285.67 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHH-HHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEecccccc
Q psy6409 986 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATDVAGR 1062 (1832)
Q Consensus 986 ~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L-~~~g~~v~~lhg~~~~~~R~~il~~F~~G--~~~VLVaTdv~~r 1062 (1832)
.|...|.+++......++||||+++..+..+++.| ...|+.+..+||+|++.+|..+++.|+++ .++|||||+++++
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 46677888888777889999999999999999999 46799999999999999999999999984 6999999999999
Q ss_pred cCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1063 GlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
|+|++.+++|||||+|.++..|.||+||+||.|+.|.+.+++...+......+.+++..
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987777766655555556555443
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=275.57 Aligned_cols=292 Identities=22% Similarity=0.226 Sum_probs=203.5
Q ss_pred CCCCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
...|+++|.+|+..+.. ++..++++|||+|||.+++..+-.. +..+||||||++|+.|+.+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------------~~~~Lvlv~~~~L~~Qw~~ 98 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------------KRSTLVLVPTKELLDQWAE 98 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------------cCCEEEEECcHHHHHHHHH
Confidence 35799999999999998 8889999999999999988766421 2239999999999999987
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
.+.+..... ..++.+.|+.... . ...|.|+|.+.+........+....+.+||||||||+....|.. +
T Consensus 99 ~~~~~~~~~-~~~g~~~~~~~~~------~-~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~ 166 (442)
T COG1061 99 ALKKFLLLN-DEIGIYGGGEKEL------E-PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----I 166 (442)
T ss_pred HHHHhcCCc-cccceecCceecc------C-CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----H
Confidence 777664321 2234444443311 1 14699999998866421122334479999999999988644433 3
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccce-EEEEEecCChHHHH---HHHHhcCCCcEEEEcccC------CCCc
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVER---LARSYLRRPATVYIGSVG------KPTE 973 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q-~v~~SATl~~~v~~---~~~~~l~~p~~v~~~~~~------~~~~ 973 (1832)
...+. ... .+++|||++..-.. ....++ .|....+.... ..+.
T Consensus 167 ~~~~~--------------------------~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~ 219 (442)
T COG1061 167 LELLS--------------------------AAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPY 219 (442)
T ss_pred HHhhh--------------------------cccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccce
Confidence 32221 122 79999997532201 111111 12222221100 0000
Q ss_pred ceEEEEE------------------------------------EcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHH
Q psy6409 974 RIEQIVY------------------------------------ILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVL 1016 (1832)
Q Consensus 974 ~i~q~~~------------------------------------~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l 1016 (1832)
.+..... ......+...+..++..+ ...++||||.+..++..+
T Consensus 220 ~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i 299 (442)
T COG1061 220 KYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEI 299 (442)
T ss_pred EEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHH
Confidence 0000000 011122333444444433 467899999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1017 AKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1017 ~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
+..|...++ +..+.|..+..+|..+++.|+.|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|.
T Consensus 300 ~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 300 AKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999988887 88999999999999999999999999999999999999999999999999999999999999999993
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=283.62 Aligned_cols=319 Identities=23% Similarity=0.311 Sum_probs=240.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
....+|| .|-++|++|+-.+..|..|+||||||||||.++-.++...+ ..+.+++|++|.++|.+|.
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al------------~~~qrviYTsPIKALsNQK 178 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL------------RDGQRVIYTSPIKALSNQK 178 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH------------HcCCceEeccchhhhhhhH
Confidence 3345677 68899999999999999999999999999999888776543 2355699999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHH
Q psy6409 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 901 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~ 901 (1832)
+..|........-.++.++|+.+. ..++.++|+|.+.|-.++-++...+..+..|||||+|.|.|...+..++
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 988876533322235778888774 3468999999999988888888889999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc---CCCcEEEEcccCCCCcceEEE
Q psy6409 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL---RRPATVYIGSVGKPTERIEQI 978 (1832)
Q Consensus 902 ~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l---~~p~~v~~~~~~~~~~~i~q~ 978 (1832)
.++-.+| ...++++||||+|+..+ |+..+- ..|..+... ...+.+ +.++
T Consensus 252 E~Ii~lP-------------------------~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t-~~RpvP-L~~~ 303 (1041)
T COG4581 252 EVIILLP-------------------------DHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVST-EHRPVP-LEHF 303 (1041)
T ss_pred HHHHhcC-------------------------CCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEee-cCCCCC-eEEE
Confidence 9999887 23689999999998654 544432 234333332 222222 2222
Q ss_pred EEE-------cchhhH-----------------------------------------------HHHHHHHHHcCCCCCEE
Q psy6409 979 VYI-------LSEQDK-----------------------------------------------RKKLMEVLNRGVKKPVI 1004 (1832)
Q Consensus 979 ~~~-------~~~~~k-----------------------------------------------~~~L~~~l~~~~~~~vI 1004 (1832)
++. +.+..+ ...+...+.....-|+|
T Consensus 304 ~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I 383 (1041)
T COG4581 304 VYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAI 383 (1041)
T ss_pred EecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceE
Confidence 221 111110 01122222223345899
Q ss_pred EEEcccchHHHHHHHHHHc----------------------------CC-------------cEEEEcCCCCHHHHHHHH
Q psy6409 1005 IFVNQKKGADVLAKGLEKL----------------------------GY-------------NACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 1005 VFv~s~~~~~~l~~~L~~~----------------------------g~-------------~v~~lhg~~~~~~R~~il 1043 (1832)
+|+-++..|+..+..+... ++ ++++||+||-+..+..+.
T Consensus 384 ~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE 463 (1041)
T COG4581 384 VFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVE 463 (1041)
T ss_pred EEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHH
Confidence 9999999999988777311 12 356899999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEE----EcCC----CCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYDM----AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d~----p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
..|..|-++||+||.+++.|+|.|.=++|+ .+|- .-+...|+|+.|||||.|-+ |.+|++-.+..
T Consensus 464 ~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 464 ELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred HHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 999999999999999999999999888777 2332 34789999999999999876 88888766554
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=275.32 Aligned_cols=342 Identities=23% Similarity=0.275 Sum_probs=253.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-..-++..|+ |+.+.||+|||++|.+|++.... .|..|-|++||..||.|.+.++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~IvTpn~yLA~rd~e~~ 142 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL------------TGKGVHVVTVNDYLAKRDAEWM 142 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH------------cCCCEEEEecCHHHHHHHHHHH
Confidence 566 78999988877776664 99999999999999999963322 2445779999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~g--- 1570 (1832)
..++..+|+++.+++|+.+...+.... .++|+++||++| .++|+.+. ..+..+.++||||||.|+=..
T Consensus 143 ~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 143 GPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred HHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 999999999999999999887765553 489999999999 89998765 346789999999999864211
Q ss_pred -------------ChHHHHHHHHhCCCCC----------------------------CCCCCchh----hhHHHHHhh--
Q psy6409 1571 -------------FEPDVQKILEYMPVTN----------------------------LKPDTEDA----EDENKLLAN-- 1603 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~~----------------------------~~~~~~~~----~~~~~l~~~-- 1603 (1832)
....+..+...+.... ...+.... .....+.+.
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 1122223333331100 00000000 000000000
Q ss_pred -------------------------------------------h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1604 -------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1604 -------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
+ +.-..+..+.+||.|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 0 001123356789999987767
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+. ..-+...|...... -..+.....|..++...+.. ....|+||||+|+..++.++..|...|+++
T Consensus 381 E~~~iY~l~v---v~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 381 EFREIYNLDV---VVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHHhCCCE---EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 7766664332 22233444433332 23445677888888888855 567899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC--------------------------------------
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------- 1744 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v-------------------------------------- 1744 (1832)
..+||. +.+|+..+..|+.+...|+|||++++||+||+==
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 999995 7899999999999999999999999999999732
Q ss_pred CEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1745 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1745 ~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
-+||-...|.|..-=-|-.|||||-|.+|.+..|++=+|.
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 3788888899999999999999999999999999998764
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=273.77 Aligned_cols=342 Identities=22% Similarity=0.297 Sum_probs=248.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-+.-++..|+ |..+.||+|||+++.+|++.... .|..|-+++|+--||.|-+.++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al------------~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL------------TGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH------------cCCCeEEEeccHHHHHhhHHHH
Confidence 576 79999998877777776 99999999999999999986553 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhhcC-C--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMIDM-G-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll~~-g-- 1570 (1832)
..+...+|++|.+++|+.+....... ..+||+.+|...|- +.|+.+. .....+.+.||||+|.++=. .
T Consensus 142 ~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeart 219 (796)
T PRK12906 142 GELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEART 219 (796)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCC
Confidence 99999999999999998877655333 36899999987763 4454432 23457899999999975311 0
Q ss_pred -------------ChHHHHHHHHhCCCC---------------------------------------CCCCCCch----h
Q psy6409 1571 -------------FEPDVQKILEYMPVT---------------------------------------NLKPDTED----A 1594 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~---------------------------------------~~~~~~~~----~ 1594 (1832)
+...+..++..+... ........ .
T Consensus 220 PLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~ 299 (796)
T PRK12906 220 PLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAH 299 (796)
T ss_pred ceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHH
Confidence 111112222211100 00000000 0
Q ss_pred hhHHHHHhh---------------------------------------------h---------------ccccCcceEE
Q psy6409 1595 EDENKLLAN---------------------------------------------Y---------------NSKKKYRQTV 1614 (1832)
Q Consensus 1595 ~~~~~l~~~---------------------------------------------~---------------~~~~~~~q~v 1614 (1832)
.....+.+. + +.-+.+..+.
T Consensus 300 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~ 379 (796)
T PRK12906 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLS 379 (796)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhh
Confidence 000000000 0 0011234567
Q ss_pred EEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHH
Q psy6409 1615 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVL 1691 (1832)
Q Consensus 1615 ~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l 1691 (1832)
+||.|......++...|--+ .+ ..+...|...... -..+.....|..++.+.+.. ....|+||||+|+..++.+
T Consensus 380 GmTGTa~~e~~Ef~~iY~l~--vv-~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~l 456 (796)
T PRK12906 380 GMTGTAKTEEEEFREIYNME--VI-TIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERL 456 (796)
T ss_pred ccCCCCHHHHHHHHHHhCCC--EE-EcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 89999877666666655433 22 2233444332222 23445567788888888843 3778999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---CCC-----EEEEeCCCCCHHHHHHHh
Q psy6409 1692 AKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---DVS-----MVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1692 ~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---~v~-----~VI~~d~P~s~~~yiQRi 1763 (1832)
+..|...|+++..+||.+.+.++..+...++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++
T Consensus 457 s~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~ 534 (796)
T PRK12906 457 SHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLR 534 (796)
T ss_pred HHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHh
Confidence 9999999999999999999888888888888887 999999999999994 899 999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCCh
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||||.|.+|.+.+|++.+|.
T Consensus 535 GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 535 GRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hhhccCCCCcceEEEEeccch
Confidence 999999999999999998864
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=269.57 Aligned_cols=291 Identities=21% Similarity=0.283 Sum_probs=193.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH
Q psy6409 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523 (1832)
Q Consensus 1444 ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~ 1523 (1832)
++.||||||||.+|+..+...+. .+..+|||+|+++|+.|+++.+++.+ +..++.++|+.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHH
Confidence 46899999999999766654432 36789999999999999999998753 5678888998876543
Q ss_pred ---HHHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCC---hHHHHHHHHhCCCCCCCCCCchhhh
Q psy6409 1524 ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF---EPDVQKILEYMPVTNLKPDTEDAED 1596 (1832)
Q Consensus 1524 ---~~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf---~~~l~~Il~~l~~~~~~~~~~~~~~ 1596 (1832)
+..+.. .++|||+|+..+. ..+.++++|||||+|...-++. ......+..
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~---------------- 122 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV---------------- 122 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH----------------
Confidence 333333 4799999998663 3578999999999997643221 101111110
Q ss_pred HHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc-c-CCCCcceEEEEEEcchh---hHHHHHHHHHH
Q psy6409 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS-V-GKPTERIEQIVYILSEQ---DKRKKLMEVLN 1671 (1832)
Q Consensus 1597 ~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~-~-~~~~~~i~q~~~~~~~~---~k~~~l~~~l~ 1671 (1832)
+.......+++++|||++......+.. .....+.... . +.....+ +.+...... .--..+.+.+.
T Consensus 123 -------~ra~~~~~~vil~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v-~vid~~~~~~~~~ls~~l~~~i~ 192 (505)
T TIGR00595 123 -------YRAKKFNCPVVLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEV-KLIDMRKEPRQSFLSPELITAIE 192 (505)
T ss_pred -------HHHHhcCCCEEEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeE-EEEecccccccCCccHHHHHHHH
Confidence 111123568999999976543322211 1111111110 0 1111111 111111110 00123344443
Q ss_pred hC--CCCcEEEEECchhH------------------------------------------------------------HH
Q psy6409 1672 RG--VKKPVIIFVNQKKG------------------------------------------------------------AD 1689 (1832)
Q Consensus 1672 ~~--~~~~vIVFv~s~~~------------------------------------------------------------a~ 1689 (1832)
.. .+.++|||+|++.. ++
T Consensus 193 ~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte 272 (505)
T TIGR00595 193 QTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTE 272 (505)
T ss_pred HHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHH
Confidence 32 45789999887643 47
Q ss_pred HHHHHHHHc--CCcEEEEcCCCCHHHH--HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEE--EeCC----CC-----
Q psy6409 1690 VLAKGLEKL--GYNACTLHGGKGQEQR--ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI--NYDM----AK----- 1754 (1832)
Q Consensus 1690 ~l~~~L~~~--~~~v~~lHg~ls~~~R--~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI--~~d~----P~----- 1754 (1832)
.+.+.|... +.++..+|++++...+ +.+++.|++|+++|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 273 ~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E 352 (505)
T TIGR00595 273 QVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAE 352 (505)
T ss_pred HHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHH
Confidence 778888776 7789999999987765 8999999999999999999999999999999886 4553 32
Q ss_pred -CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1755 -SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1755 -s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
....|+|++|||||.++.|.+++.....
T Consensus 353 ~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 353 RGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 2567999999999999999998655433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=269.72 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=128.8
Q ss_pred cCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccC
Q psy6409 1407 EASLPTEILEIIE-----KIGYAEP---TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478 (1832)
Q Consensus 1407 e~~L~~~ll~~l~-----~~g~~~p---tpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~ 1478 (1832)
.+.+.+.+...+. ..||..| +|+|.|+++.++.++++|+.|+||+|||++|++|++..+..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~----------- 134 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT----------- 134 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----------
Confidence 3467777777766 5799999 99999999999999999999999999999999999976532
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccccccC----
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRYLVLN---- 1553 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~~~l~---- 1553 (1832)
+..++||+||++||.|++.++..++..+|+++.+++||.+...+...+ +++|+||||++| .++++.+.+.++
T Consensus 135 -g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~ 211 (970)
T PRK12899 135 -GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQ 211 (970)
T ss_pred -cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHh
Confidence 223899999999999999999999999999999999999988876554 599999999999 999998766555
Q ss_pred ---CceeEEEccchhhhc
Q psy6409 1554 ---QCTYIVLDEADRMID 1568 (1832)
Q Consensus 1554 ---~v~llViDEaH~ll~ 1568 (1832)
.+.++||||||.|+-
T Consensus 212 vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 212 VGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hcccccEEEEechhhhhh
Confidence 458999999998763
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=271.89 Aligned_cols=351 Identities=20% Similarity=0.261 Sum_probs=255.9
Q ss_pred CCHHHH-HHHHHcCCCCCcHHHHHHH--HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1410 LPTEIL-EIIEKIGYAEPTPIQRQAI--PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1410 L~~~ll-~~l~~~g~~~ptpiQ~~ai--~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
+++.+. -..+..|...++.+|.+++ |.++.++|+|..+||+.|||+++.+-|+..+.. ....++.+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-----------~rr~~lli 275 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-----------RRRNVLLI 275 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-----------HhhceeEe
Confidence 444444 3445678999999999987 678899999999999999999999999876543 35569999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc--ccccCCceeEEEccch
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~--~~~l~~v~llViDEaH 1564 (1832)
.|....+++-...+..++..+|+.+-+.+|..++... .+.-++.|||.++-..++.+- .-.+..+++||+||.|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 9999999999999999999999999988887776532 335689999999887666542 2246678999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~ 1644 (1832)
.+.+.+.+..++.++..+-..+ .....|+|++|||+|+.- ++..|+.......-....
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~~--------------------~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~fRPv 409 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYEN--------------------LETSVQIIGMSATIPNNS--LLQDWLDAFVYTTRFRPV 409 (1008)
T ss_pred eeeccccchHHHHHHHHHHHhc--------------------cccceeEeeeecccCChH--HHHHHhhhhheecccCcc
Confidence 9999999999999887653222 112278999999999852 334444321111100000
Q ss_pred CCCcce--EEEEEEcchh----------------hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHH-------
Q psy6409 1645 KPTERI--EQIVYILSEQ----------------DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK------- 1697 (1832)
Q Consensus 1645 ~~~~~i--~q~~~~~~~~----------------~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~------- 1697 (1832)
.-...+ -...+..+.. ...+.++.++... .+.++||||+++..|+.++..+..
T Consensus 410 ~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~ 489 (1008)
T KOG0950|consen 410 PLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIK 489 (1008)
T ss_pred cchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhh
Confidence 000000 0001111000 0112233333322 234699999999999998865532
Q ss_pred -------------------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCE
Q psy6409 1698 -------------------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746 (1832)
Q Consensus 1698 -------------------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~ 1746 (1832)
..+++++||+|++.++|+.+...|++|-+.|++||+++++|++.|...+
T Consensus 490 ~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRV 569 (1008)
T KOG0950|consen 490 SEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRV 569 (1008)
T ss_pred hhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCccee
Confidence 1468999999999999999999999999999999999999999999888
Q ss_pred EEEeCC----CCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcC
Q psy6409 1747 VINYDM----AKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1747 VI~~d~----P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1797 (1832)
+|-.-+ +.+..+|.||+|||||+| ..|.+++++...+...+.++.....+-
T Consensus 570 IiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~ 626 (1008)
T KOG0950|consen 570 IIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKP 626 (1008)
T ss_pred EEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccc
Confidence 876432 347889999999999987 459999999999988777776654433
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-25 Score=265.82 Aligned_cols=307 Identities=21% Similarity=0.285 Sum_probs=237.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
++-|+|..||-.+-.+..|+|.|-|.+|||.++-.+|-..+. ..-+++|..|-++|-+|-++++..-.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------------~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------------EKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------------hcCeEEeeChhhhhcchhHHHHHHHh
Confidence 578999999999999999999999999999998888876653 35689999999999999988887644
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~ 909 (1832)
.. |+..+|+.+. ...+..+|+|.+.|-.+|-++.-.+..+..||+||+|.|-|..++-.++.-+-.+|
T Consensus 197 ~D----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP- 264 (1041)
T KOG0948|consen 197 KD----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP- 264 (1041)
T ss_pred cc----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc-
Confidence 43 5668888774 34578899999999999989888899999999999999999888877776555554
Q ss_pred CCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHH---hcCCCcEEEEcccCCCCcceEEEEEE-----
Q psy6409 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS---YLRRPATVYIGSVGKPTERIEQIVYI----- 981 (1832)
Q Consensus 910 ~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~---~l~~p~~v~~~~~~~~~~~i~q~~~~----- 981 (1832)
...+.+++|||+|+..+ |+.. .-..|..+...+... ..++|+++.
T Consensus 265 ------------------------~~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdyRP--TPLQHyifP~ggdG 317 (1041)
T KOG0948|consen 265 ------------------------DNVRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDYRP--TPLQHYIFPAGGDG 317 (1041)
T ss_pred ------------------------ccceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecCCC--CcceeeeecCCCCe
Confidence 34789999999998665 5544 345566555443322 223443221
Q ss_pred ----cch-----hhHHHHHHHHH--------------------------------------HcCCCCCEEEEEcccchHH
Q psy6409 982 ----LSE-----QDKRKKLMEVL--------------------------------------NRGVKKPVIIFVNQKKGAD 1014 (1832)
Q Consensus 982 ----~~~-----~~k~~~L~~~l--------------------------------------~~~~~~~vIVFv~s~~~~~ 1014 (1832)
+.+ ++.+...+..| ......|+|||+-++++|+
T Consensus 318 lylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE 397 (1041)
T KOG0948|consen 318 LYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECE 397 (1041)
T ss_pred eEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHH
Confidence 111 12223333333 2223347999999999999
Q ss_pred HHHHHHHHcC---------------------------------------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q psy6409 1015 VLAKGLEKLG---------------------------------------YNACTLHGGKGQEQRELALNSLKGGSKDILV 1055 (1832)
Q Consensus 1015 ~l~~~L~~~g---------------------------------------~~v~~lhg~~~~~~R~~il~~F~~G~~~VLV 1055 (1832)
.+|-.+.++. -++++||||+.+--.+.|.=.|.+|-++||+
T Consensus 398 ~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLF 477 (1041)
T KOG0948|consen 398 AYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLF 477 (1041)
T ss_pred HHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHH
Confidence 9998874431 2478999999999999999999999999999
Q ss_pred ecccccccCCCcCcCEEE----EcCCC----CCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1056 ATDVAGRGIDIKDVSMVI----NYDMA----KSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1056 aTdv~~rGlDip~v~~VI----~~d~p----~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
||.+++.|||.|+-++|+ -||-- .|--.|+|+.|||||-|.+ |.||+++...
T Consensus 478 ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 478 ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 999999999999988887 23322 1667899999999999876 8888887765
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=270.12 Aligned_cols=339 Identities=21% Similarity=0.281 Sum_probs=251.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 734 SLPTEILEIIEKIGYAEPTPIQRQAI--PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 734 ~L~~~l~~~l~~~g~~~pt~iQ~~ai--~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
+++....-..+..|....+.+|.+++ |.++.++|+|..+||+.|||+++-+-++..+.. ....++.+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-----------~rr~~lli 275 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-----------RRRNVLLI 275 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-----------HhhceeEe
Confidence 33434444556689999999999997 678889999999999999999999999876542 35579999
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--ccccCCceeEEEecch
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--~~~l~~~~~lViDEaH 889 (1832)
.|....++.-...+..++.++|+.+-+.+|....... ....+|.|||-++-..++++- .-.+..+.+||+||-|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 9999999998889999999999999988877664332 335789999999886555432 1256788999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 969 (1832)
Q Consensus 890 ~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~ 969 (1832)
.+.|.+++..++.++..+-.. ......|+|++|||+|+. . +...+++.. ++....
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~--------------------~~~~~~~iIGMSATi~N~-~-lL~~~L~A~--~y~t~f- 406 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYE--------------------NLETSVQIIGMSATIPNN-S-LLQDWLDAF--VYTTRF- 406 (1008)
T ss_pred eeeccccchHHHHHHHHHHHh--------------------ccccceeEeeeecccCCh-H-HHHHHhhhh--heeccc-
Confidence 999999999999998876321 111227899999999973 3 344455422 222211
Q ss_pred CCCcceE-----EEEEEcchhhHHHHHHHHH-------------------Hc--CCCCCEEEEEcccchHHHHHHHHHH-
Q psy6409 970 KPTERIE-----QIVYILSEQDKRKKLMEVL-------------------NR--GVKKPVIIFVNQKKGADVLAKGLEK- 1022 (1832)
Q Consensus 970 ~~~~~i~-----q~~~~~~~~~k~~~L~~~l-------------------~~--~~~~~vIVFv~s~~~~~~l~~~L~~- 1022 (1832)
.|....+ ..++.. .+...+.++- .. ..+.++||||++++.|+.++..+..
T Consensus 407 RPv~L~E~ik~G~~i~~~---~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~ 483 (1008)
T KOG0950|consen 407 RPVPLKEYIKPGSLIYES---SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKK 483 (1008)
T ss_pred CcccchhccCCCcccccc---hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHH
Confidence 1111111 111111 1222222221 11 1233599999999999998866521
Q ss_pred -------------------------------------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCC
Q psy6409 1023 -------------------------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 1023 -------------------------------------~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlD 1065 (1832)
..+++.+||+|++.++|+.+...|++|.+.||+||+++++|+|
T Consensus 484 vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVN 563 (1008)
T KOG0950|consen 484 VPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVN 563 (1008)
T ss_pred hhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCc
Confidence 1356899999999999999999999999999999999999999
Q ss_pred CcCcCEEEEcCC----CCCHhHHHHHhcccccCCCC--cEEEEEecCCCchHHHHH
Q psy6409 1066 IKDVSMVINYDM----AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1066 ip~v~~VI~~d~----p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d~~~~~~l 1115 (1832)
+|+..++|-.-+ ..+...|.||+|||||+|.+ |.+|+++.+.+...+..+
T Consensus 564 LPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 564 LPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred CCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 999999985433 34788999999999999876 999999999997665543
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=264.44 Aligned_cols=319 Identities=22% Similarity=0.240 Sum_probs=247.9
Q ss_pred HHHHHH-HHcCCCCCcHHHHHHHHHHHc----C--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 738 EILEII-EKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 738 ~l~~~l-~~~g~~~pt~iQ~~ai~~il~----g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
.....+ ..++| .-||-|..||..+.. + -|=++||-.|-|||.+++-+++..+ ..|++|.|
T Consensus 582 ~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV------------~~GKQVAv 648 (1139)
T COG1197 582 EWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV------------MDGKQVAV 648 (1139)
T ss_pred HHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh------------cCCCeEEE
Confidence 333444 45777 579999999999985 3 4789999999999999999998654 35899999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh---cC-CceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---LG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~---~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
||||.-||+|.++.|++....+++++..+..-.+..++...+. .| .+||||| .-|..+.+.+.++.+||||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEe
Confidence 9999999999999999999999999999998888777655443 33 8999999 4455667789999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|-|+.. ......+..+ +.+.-++-+|||.=|..-.++...+++-..+...
T Consensus 724 EEqRFG-Vk~KEkLK~L-----------------------------r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP 773 (1139)
T COG1197 724 EEQRFG-VKHKEKLKEL-----------------------------RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP 773 (1139)
T ss_pred chhhcC-ccHHHHHHHH-----------------------------hccCcEEEeeCCCCcchHHHHHhcchhhhhccCC
Confidence 999743 1122222222 1346789999998666666777766665444332
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
+... ..+..++...+..--...++.-+. .++++..-+|..+..+.+++.|+.+ ...+++.||.|+..+-+.++.
T Consensus 774 P~~R--~pV~T~V~~~d~~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 774 PEDR--LPVKTFVSEYDDLLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred CCCC--cceEEEEecCChHHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 2221 223333333333322333333332 4678888899999999999999987 578999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
.|-+|+++|||||.+.+.|||||+++.+|..+.-. ..++..|..||+||....|.|+.++.+..
T Consensus 850 ~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred HHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 99999999999999999999999999999766644 88999999999999999999999998764
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=263.14 Aligned_cols=316 Identities=21% Similarity=0.225 Sum_probs=248.9
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhc----C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~il~----g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
+.-..++| .-||-|..||..+.. + .|=++|+-.|-|||-+++-+++..+ .+|+.|.|||||
T Consensus 586 ~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV------------~~GKQVAvLVPT 652 (1139)
T COG1197 586 EFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV------------MDGKQVAVLVPT 652 (1139)
T ss_pred HHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh------------cCCCeEEEEccc
Confidence 34445777 789999999999884 3 4789999999999999999998655 358999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh---hc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchh
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---RL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l---~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ 1565 (1832)
.-||+|.++.|++-+..+++++..+.-=.+..++...+ .. ..||||+|- .|.+..+.+.++++|||||=|+
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqR 727 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQR 727 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhh
Confidence 99999999999999999999998887766666554433 33 489999994 3446677899999999999998
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCC
Q psy6409 1566 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 1645 (1832)
Q Consensus 1566 ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~ 1645 (1832)
..- .....+..+ +...-++-+|||+-|....+....+++-..+...+.++
T Consensus 728 FGV-k~KEkLK~L-----------------------------r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R 777 (1139)
T COG1197 728 FGV-KHKEKLKEL-----------------------------RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR 777 (1139)
T ss_pred cCc-cHHHHHHHH-----------------------------hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC
Confidence 631 122222222 23456899999998888888888888766665544433
Q ss_pred CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
.. |..++...+..--..++..-+ ..++++...+|.++..+.++..|+.+ ...+++.||.|+..+-+.++..|-+
T Consensus 778 ~p--V~T~V~~~d~~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 778 LP--VKTFVSEYDDLLIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred cc--eEEEEecCChHHHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 22 333444333333333333322 25688999999999999999999987 5678999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
|+++|||||++.+.|||||+++.+|..+.-. -.++..|..||+||.+..|.|+.++.+.+
T Consensus 854 g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 854 GEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 9999999999999999999999998765433 58899999999999999999999998764
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=276.77 Aligned_cols=304 Identities=18% Similarity=0.222 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.++++|.+|+..+. .| +.+++++|||||||++++..+...+.. ....++|||||+.+|+.|+...
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~----------~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA----------KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc----------CccCeEEEEecHHHHHHHHHHH
Confidence 69999999998876 23 679999999999999855444333221 2356899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-----ccccCCceeEEEccchhhhcC-----
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMIDM----- 1569 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-----~~~l~~v~llViDEaH~ll~~----- 1569 (1832)
|..+....+.....+++....... .......|+|+|.+++...+... ...+.++++||+||||+-...
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 998743322122112221111111 11235789999999998765321 245788999999999985311
Q ss_pred ----C------ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHH-------------
Q psy6409 1570 ----G------FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER------------- 1626 (1832)
Q Consensus 1570 ----g------f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~------------- 1626 (1832)
+ +...+..|+.++. ...++||||+......
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yFd---------------------------A~~IGLTATP~r~t~~~FG~pv~~Ysl~e 613 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYFD---------------------------AVKIGLTATPALHTTEIFGEPVYTYSYRE 613 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhcC---------------------------ccEEEEecCCccchhHHhCCeeEEeeHHH
Confidence 1 1244555555432 2479999998632211
Q ss_pred -HHHHhcCC---CcEEEEcc--cCCC---Cc---ceEE---EE--EEcchh--------h-------HHHH----HHHHH
Q psy6409 1627 -LARSYLRR---PATVYIGS--VGKP---TE---RIEQ---IV--YILSEQ--------D-------KRKK----LMEVL 1670 (1832)
Q Consensus 1627 -~~~~~l~~---p~~v~i~~--~~~~---~~---~i~q---~~--~~~~~~--------~-------k~~~----l~~~l 1670 (1832)
+...|+.+ |..+.... .+.. .. .+.. .+ ....+. . .... +...+
T Consensus 614 AI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l 693 (1123)
T PRK11448 614 AVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL 693 (1123)
T ss_pred HHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11122221 22211100 0000 00 0000 00 000000 0 0011 22222
Q ss_pred HhCCCCcEEEEECchhHHHHHHHHHHHc------CC---cEEEEcCCCCHHHHHHHHHHhhCCCC-cEEEEcccccccCC
Q psy6409 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKL------GY---NACTLHGGKGQEQRELALNSLKGGSK-DILVATDVAGRGID 1740 (1832)
Q Consensus 1671 ~~~~~~~vIVFv~s~~~a~~l~~~L~~~------~~---~v~~lHg~ls~~~R~~il~~F~~g~~-~VLVATdvl~~GID 1740 (1832)
.....+++||||.++.+|+.++..|... ++ .+..+||+.+ ++..+++.|+++.. +|||+++++.+|+|
T Consensus 694 ~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~D 771 (1123)
T PRK11448 694 DPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGID 771 (1123)
T ss_pred hccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCC
Confidence 2233478999999999999999887653 22 4566888875 46789999999987 69999999999999
Q ss_pred CCCCCEEEEeCCCCCHHHHHHHhcccccC
Q psy6409 1741 IKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1741 ip~v~~VI~~d~P~s~~~yiQRiGRaGR~ 1769 (1832)
+|.|.+||.++.+.|...|+||+||+.|.
T Consensus 772 vP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 772 VPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred cccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 99999999999999999999999999995
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-24 Score=234.77 Aligned_cols=147 Identities=35% Similarity=0.521 Sum_probs=132.2
Q ss_pred ChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcCCC
Q psy6409 11 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 90 (1832)
Q Consensus 11 ~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~~ 90 (1832)
||.|.++|+.+++|+|++++||||||||++|++|++..+... ....+||++||++|+.|+.+.+++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----------CCceEEEEeecccccccccccccccccc
Confidence 899999999999999999999999999999999999877542 2348999999999999999999999998
Q ss_pred ccceEEEEeCCcchH-HHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhCC
Q psy6409 91 LGIRTVLVVGGLSRE-EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167 (1832)
Q Consensus 91 ~~~~~~~~~gg~~~~-~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~ 167 (1832)
.+++...++||.+.. .+...+..+++|||+||++|.+++..+.+.+..+++||+||+|.+.+++|...+..|++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhc
Confidence 889999999999966 56666677899999999999999998766778899999999999999999999999988763
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=274.02 Aligned_cols=303 Identities=18% Similarity=0.215 Sum_probs=195.8
Q ss_pred CCCcHHHHHHHHHHHc-----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ-----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~-----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
..|+++|.+||..+.. .+.++++++||||||.+++..+. .+.. .....++|||+|+++|+.|+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~---------~~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLK---------AKRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHh---------cCccCeEEEEecHHHHHHHHHH
Confidence 3589999999988762 36799999999999988554333 3321 1235689999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-----ccccCCceeEEEecchhhhc-----
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMID----- 893 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-----~~~l~~~~~lViDEaH~l~d----- 893 (1832)
.|..+....+.....+++.....+. .......|+|+|.++|...+... ...+.++++||+||||+-..
T Consensus 482 ~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 482 AFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred HHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 9998743322222222221111111 11235899999999997765321 13568899999999998531
Q ss_pred ----CCC------hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE-
Q psy6409 894 ----MGF------EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT- 962 (1832)
Q Consensus 894 ----~gf------~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~- 962 (1832)
.+| ...+..++.++. ...|+||||..... ..++..|+.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFd---------------------------A~~IGLTATP~r~t----~~~FG~pv~~ 608 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFD---------------------------AVKIGLTATPALHT----TEIFGEPVYT 608 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcC---------------------------ccEEEEecCCccch----hHHhCCeeEE
Confidence 011 234444544331 34799999974221 122223321
Q ss_pred --------------------EEEc--ccC---CCC---cceEE---EE--EEcch---------------hhHH----HH
Q psy6409 963 --------------------VYIG--SVG---KPT---ERIEQ---IV--YILSE---------------QDKR----KK 990 (1832)
Q Consensus 963 --------------------v~~~--~~~---~~~---~~i~q---~~--~~~~~---------------~~k~----~~ 990 (1832)
+... ..+ ... ..+.. .+ ....+ .... ..
T Consensus 609 Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~ 688 (1123)
T PRK11448 609 YSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEE 688 (1123)
T ss_pred eeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHH
Confidence 1110 000 000 00000 00 00000 0001 11
Q ss_pred HHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc------CC---cEEEEcCCCCHHHHHHHHHHHhCCCC-cEEEecccc
Q psy6409 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------GY---NACTLHGGKGQEQRELALNSLKGGSK-DILVATDVA 1060 (1832)
Q Consensus 991 L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------g~---~v~~lhg~~~~~~R~~il~~F~~G~~-~VLVaTdv~ 1060 (1832)
+.+.+....++++||||.++.+|+.+++.|... ++ .+..+||+.+ ++..+++.|++|.. +|||+++++
T Consensus 689 l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 689 LAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred HHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 222232234578999999999999999888653 22 4567899875 46789999999987 699999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
.+|+|+|.|.+||.++++.|...|+|++||+.|.-.
T Consensus 767 ~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 767 TTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999999999999999999999999999999999643
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=259.10 Aligned_cols=342 Identities=20% Similarity=0.268 Sum_probs=236.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++.+|+ |+.++||.|||++|.+|++...+ .|..|.||+|+..||.|..+++
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al------------~g~~VhIvT~ndyLA~RD~e~m 143 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVITVNDYLARRDAENN 143 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHh------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 454 67888876666666664 99999999999999999986542 3555999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc-c-----ccCCceeEEEecchhhhcCC-Ch
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-L-----VLNQCTYIVLDEADRMIDMG-FE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~-~-----~l~~~~~lViDEaH~l~d~g-f~ 897 (1832)
..+...+|++|.+++|+.+..+. .-.-.++|+||||+.| .|+|..+. + ....+.++||||||.|+-+. .-
T Consensus 144 ~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArt 221 (908)
T PRK13107 144 RPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEART 221 (908)
T ss_pred HHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCC
Confidence 99999999999999999886433 2223699999999999 88887652 2 23678999999999876322 11
Q ss_pred ---------------HHHHHHHHhCCCC------------C--CCC------CCc-hhHHHHHHH---------------
Q psy6409 898 ---------------PDVQKILEYMPVT------------N--LKP------DTE-DAEDENKLL--------------- 926 (1832)
Q Consensus 898 ---------------~~i~~Il~~l~~~------------~--~~~------~~~-~~~~~~~ll--------------- 926 (1832)
..+..++..+... . ... -++ .......++
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~ 301 (908)
T PRK13107 222 PLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 (908)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCc
Confidence 1111122221100 0 000 000 000011111
Q ss_pred -------------Hhh---ccc----------------------------------------------------------
Q psy6409 927 -------------ANY---NSK---------------------------------------------------------- 932 (1832)
Q Consensus 927 -------------~~~---~~~---------------------------------------------------------- 932 (1832)
... ...
T Consensus 302 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (908)
T PRK13107 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF 381 (908)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH
Confidence 000 000
Q ss_pred cccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcc
Q psy6409 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1009 (1832)
Q Consensus 933 ~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s 1009 (1832)
+.+..+.++|.|.......|...|--+ +..-+...+......- ..+.....|...+.+-+.. ..+.|+||||+|
T Consensus 382 r~Y~kL~GMTGTa~te~~Ef~~iY~l~---Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 382 RQYEKLAGMTGTADTEAFEFQHIYGLD---TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HhhhHhhcccCCChHHHHHHHHHhCCC---EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 011123345555444334444433221 2222223333222221 2334556777766665543 357799999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc----------------------
Q psy6409 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1067 (1832)
Q Consensus 1010 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------------------- 1067 (1832)
...++.++..|...|+++..+||.+++.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999985
Q ss_pred ---------------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1068 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1068 ---------------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+==+||-...+.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 123788888888888889999999999999999999998873
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=253.26 Aligned_cols=342 Identities=20% Similarity=0.271 Sum_probs=239.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--.+..| -|+.++||+|||++|.+|++.... .|..|.||+|+..||.|..+++
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al------------~g~~VhIvT~ndyLA~RD~e~m 143 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVITVNDYLARRDAENN 143 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHh------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 565 7888887665555444 599999999999999999986543 2555999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc-cc-----cCCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-LV-----LNQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~-~~-----l~~v~llViDEaH~ll~~g--- 1570 (1832)
..+...+|++|.++.++.+..... -.-+++|+++||+.| .++|+.+. +. ...+.++||||||.|+-..
T Consensus 144 ~~l~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArt 221 (908)
T PRK13107 144 RPLFEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEART 221 (908)
T ss_pred HHHHHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCC
Confidence 999999999999999998864332 123689999999999 88888762 22 3778999999999865321
Q ss_pred -------------ChHHHHHHHHhCCCC------------CCCCC--------Cc-hhhhHHHHH---------------
Q psy6409 1571 -------------FEPDVQKILEYMPVT------------NLKPD--------TE-DAEDENKLL--------------- 1601 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~------------~~~~~--------~~-~~~~~~~l~--------------- 1601 (1832)
+...+..++..+... .+..+ +. ........+
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~ 301 (908)
T PRK13107 222 PLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 (908)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCc
Confidence 111111122111100 00000 00 000000000
Q ss_pred --------------hh--hccc----------------------------------------------------------
Q psy6409 1602 --------------AN--YNSK---------------------------------------------------------- 1607 (1832)
Q Consensus 1602 --------------~~--~~~~---------------------------------------------------------- 1607 (1832)
+. +...
T Consensus 302 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (908)
T PRK13107 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF 381 (908)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH
Confidence 00 0000
Q ss_pred cCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECc
Q psy6409 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1684 (1832)
Q Consensus 1608 ~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s 1684 (1832)
+.+..+.+||.|......++..-|--+ +...+...|....... ..+.....|..++++-+.. ..+.|+||||+|
T Consensus 382 r~Y~kL~GMTGTa~te~~Ef~~iY~l~---Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 382 RQYEKLAGMTGTADTEAFEFQHIYGLD---TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HhhhHhhcccCCChHHHHHHHHHhCCC---EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 001123356666555544555544322 2222334443333222 2344556777777766653 367899999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC----------------------
Q psy6409 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1742 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------------------- 1742 (1832)
+..++.++..|...++++..+|+.+++.++..+.+.|+.|. |+|||++++||+||.
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999986
Q ss_pred ---------------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1743 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1743 ---------------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.=-+||-...+.|..-=-|-.|||||-|.+|.+..|++=+|.
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 123788888898888889999999999999999999998764
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=235.25 Aligned_cols=332 Identities=18% Similarity=0.206 Sum_probs=239.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+..|...+.++...+.+++..-......+.+-+..+.+++-++++|.||||||. .+|-...-...+ ...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~---------~~~ 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELS---------HLT 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHh---------hcc
Confidence 667888888888888888765444444455555666678889999999999998 455442211111 125
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
.+.+..|.|..|++++.+.. ..+.+..+.-+|.....+. .....+-+-++|.|+|++...... .+..+++||+|
T Consensus 93 ~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEd--C~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFED--CTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHH---HHhccccchhccccccccc--cCChhHHHHHhcchHHHHHHhhCc-ccccccEEEec
Confidence 68999999999999766544 3456666666666554443 111233455788888887666555 68999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
||| .++..++.+.++++.+...++...+|.+|||+. ..+|-.+|.+.|.....+
T Consensus 167 eah------------------------ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~--a~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 167 EAH------------------------ERTLATDILMGLLKEVVRNRPDLKLVVMSATLD--AEKFQRYFGNAPLLAVPG 220 (699)
T ss_pred hhh------------------------hhhHHHHHHHHHHHHHHhhCCCceEEEeecccc--hHHHHHHhCCCCeeecCC
Confidence 999 445677888999999998889999999999983 566666666666554443
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc---------CCcEEEEcCCCCHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------GYNACTLHGGKGQE 1037 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~ 1037 (1832)
......-+.+...-..-+.....+++++....++.++||....++++..++.+... .+.|.++| +.
T Consensus 221 -~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~ 295 (699)
T KOG0925|consen 221 -THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PA 295 (699)
T ss_pred -CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----ch
Confidence 22211111111112233456677778887778899999999999998888887632 25678888 55
Q ss_pred HHHHHHHHHhC---C--CCcEEEecccccccCCCcCcCEEEEcCC------------------CCCHhHHHHHhcccccC
Q psy6409 1038 QRELALNSLKG---G--SKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1038 ~R~~il~~F~~---G--~~~VLVaTdv~~rGlDip~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~ 1094 (1832)
++..+++.... | ..+|+|+|++++..+.|++|.+||+.++ |.|..+..||.|||||.
T Consensus 296 ~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt 375 (699)
T KOG0925|consen 296 QQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 375 (699)
T ss_pred hhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC
Confidence 66666666542 2 3579999999999999999999997776 67899999999999997
Q ss_pred CCCcEEEEEecCC
Q psy6409 1095 GKEGLAVSFCTKD 1107 (1832)
Q Consensus 1095 g~~G~ai~~~~~~ 1107 (1832)
. +|+|+.+|+++
T Consensus 376 ~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 376 R-PGKCFRLYTEE 387 (699)
T ss_pred C-CCceEEeecHH
Confidence 5 69999999976
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=245.06 Aligned_cols=322 Identities=19% Similarity=0.212 Sum_probs=216.7
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCe
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~ 835 (1832)
++...+|..+--+||||.||||||+ .+|.+.|=.- .. . .....+..+-|..|+|..|..++++...-+..+|-.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAG--f~-s-~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e 335 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAG--FA-S-EQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE 335 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcc--cC-C-ccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccc
Confidence 3445556666679999999999999 6777654211 10 0 111235589999999999988887766433336666
Q ss_pred EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915 (1832)
Q Consensus 836 v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~ 915 (1832)
|.+.+.... .....+.|.++|.|.|+..+.+.. .|..++.|||||||.-.- .-+.+-.++.++-.
T Consensus 336 VsYqIRfd~------ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~------ 400 (1172)
T KOG0926|consen 336 VSYQIRFDG------TIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVP------ 400 (1172)
T ss_pred eeEEEEecc------ccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHH------
Confidence 665443222 122368899999999999998765 689999999999995320 11222222222200
Q ss_pred CchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH--Hhc-CCCcEEEEcccCCCCc-ceEEEEEEcchhhHHHHH
Q psy6409 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR--SYL-RRPATVYIGSVGKPTE-RIEQIVYILSEQDKRKKL 991 (1832)
Q Consensus 916 ~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~--~~l-~~p~~v~~~~~~~~~~-~i~q~~~~~~~~~k~~~L 991 (1832)
+..-...-...-+...+|++|||+- +.+|.. .++ .-|..+.+.....+.. .........+-...+...
T Consensus 401 ------LR~k~~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKt 472 (1172)
T KOG0926|consen 401 ------LRQKYYKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKT 472 (1172)
T ss_pred ------HHHHHhhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHH
Confidence 0000011112234678999999983 555542 122 2233333332222111 011111112334566777
Q ss_pred HHHHHcCCCCCEEEEEcccchHHHHHHHHHHc------------------------------------------------
Q psy6409 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------------------------------------------ 1023 (1832)
Q Consensus 992 ~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------------------------------------------ 1023 (1832)
..+++..+++.+|||+..+.+++.|++.|++.
T Consensus 473 c~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~ 552 (1172)
T KOG0926|consen 473 CKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDI 552 (1172)
T ss_pred HHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhh
Confidence 78888889999999999999999999998331
Q ss_pred ---------------------------------------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 1024 ---------------------------------------------------GYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 1024 ---------------------------------------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+-|.++++-++.+.+..+|+.-..|..=
T Consensus 553 d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RL 632 (1172)
T KOG0926|consen 553 DQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERL 632 (1172)
T ss_pred hhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceE
Confidence 01267888999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCC------------------CHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
++|||+||+..|.||+|.+||+.+.-+ |.++.-||+|||||.|. |+|+.+|+..
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp-GHcYRLYSSA 704 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP-GHCYRLYSSA 704 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC-CceeehhhhH
Confidence 999999999999999999999765522 56677899999999995 9999999864
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=218.20 Aligned_cols=167 Identities=35% Similarity=0.529 Sum_probs=142.5
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
||+|.++++.+.+|+|++++||||+|||++|++|++..+.. ....+++|++|+++|+.|+...+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~----------~~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE----------GKDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT----------TSSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc----------CCCceEEEEeecccccccccccccccccc
Confidence 79999999999999999999999999999999999987643 12348999999999999999999999888
Q ss_pred CCCeEEEEEcCCchH-HHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCC
Q psy6409 832 LGIRTVLVVGGLSRE-EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910 (1832)
Q Consensus 832 ~~i~v~~~~Gg~~~~-~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~ 910 (1832)
.++++..++|+.... .....+..+++|+|+||++|.+.+......+.++++|||||+|++.++++...+..|+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~- 149 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR- 149 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC-
Confidence 889999999999865 344445557999999999999999886557777999999999999998889988888887631
Q ss_pred CCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 911 ~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
....+++++|||+++.+++
T Consensus 150 ----------------------~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 ----------------------FKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp ----------------------TTTSEEEEEESSSTHHHHH
T ss_pred ----------------------CCCCcEEEEeeCCChhHhh
Confidence 1147899999999976664
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-21 Score=212.14 Aligned_cols=304 Identities=20% Similarity=0.229 Sum_probs=207.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+++|.|..+-..++ +..++|+.|-||+|||-.. ++.+....+ .|.++.+..|....+.+++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~-----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN-----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh-----------cCCeEEEecCcccchHHHHHHH
Confidence 78999988777665 5689999999999999863 344443332 5889999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
+.-+. +..+.+++|+.....+ .+++|+|...|+..- +.++++||||+|..- ..--+.+..-+.
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP-~~~d~~L~~Av~ 227 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFP-FSDDQSLQYAVK 227 (441)
T ss_pred HHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEecccccc-ccCCHHHHHHHH
Confidence 98654 4667889998775432 679999998876643 358999999999431 111122222221
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 1660 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~ 1660 (1832)
. ......-++.+|||.++.++.-+...-..+ +.+...-.....+...+.++..-
T Consensus 228 ~------------------------ark~~g~~IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpvPkf~w~~~~ 281 (441)
T COG4098 228 K------------------------ARKKEGATIYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPVPKFVWIGNW 281 (441)
T ss_pred H------------------------hhcccCceEEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCCCceEEeccH
Confidence 1 122345689999999988765443321111 11111111111111223333222
Q ss_pred hH------H-HHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHH-cC-CcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1661 DK------R-KKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK-LG-YNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1661 ~k------~-~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~-~~-~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
.| + ..|..+++.+ .+.|++||++++...+.++..|+. .+ ..++..|+. ...|.+..+.|++|++.||
T Consensus 282 ~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lL 359 (441)
T COG4098 282 NKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLL 359 (441)
T ss_pred HHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEE
Confidence 22 1 2677777655 568999999999999999999943 33 345677875 3568999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCC--CCHHHHHHHhcccccCC-C-ccEEEEEeeCCChh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMA--KSIEDYTHRIGRTGRAG-K-EGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P--~s~~~yiQRiGRaGR~g-~-~G~ai~~~~~~d~~ 1785 (1832)
|+|++++|||.+|+|+++|.-.-- .+-+.++|.+||+||.- . .|..+.|-..-.+.
T Consensus 360 iTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 360 ITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred EEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 999999999999999987753322 46889999999999953 2 46665554443433
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=205.77 Aligned_cols=310 Identities=19% Similarity=0.226 Sum_probs=208.8
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+++|.|+.+-..++ +..++||.|-||+|||.. +.+.+.... ..|.++.+..|+...+.+++.+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al-----------~~G~~vciASPRvDVclEl~~R 163 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL-----------NQGGRVCIASPRVDVCLELYPR 163 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH-----------hcCCeEEEecCcccchHHHHHH
Confidence 368999987766555 468999999999999985 333333332 3588999999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il 904 (1832)
++.... ++.+.+++|+..... ..+++|+|.-.|+.. -+.++++||||+|-..
T Consensus 164 lk~aF~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP------------ 215 (441)
T COG4098 164 LKQAFS--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFP------------ 215 (441)
T ss_pred HHHhhc--cCCeeeEecCCchhc-------cccEEEEehHHHHHH-------HhhccEEEEecccccc------------
Confidence 988643 567888999877432 278899998777553 3467899999999421
Q ss_pred HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch
Q psy6409 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE 984 (1832)
Q Consensus 905 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~ 984 (1832)
.. . ......+........--+|.+|||.|..+++-+..- +-..+.+.......+...-.+.++..
T Consensus 216 ----~~------~---d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~ 280 (441)
T COG4098 216 ----FS------D---DQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGN 280 (441)
T ss_pred ----cc------C---CHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEecc
Confidence 00 0 000011111223345568999999987776543321 11122222222222222222333332
Q ss_pred hhH-H------HHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHH-cC-CcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 985 QDK-R------KKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK-LG-YNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 985 ~~k-~------~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~-~g-~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
-.| + ..|..+++.+ .+.|++||+++....+.++..|+. .+ ..+..+|+. ...|.+..+.|++|++++
T Consensus 281 ~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~l 358 (441)
T COG4098 281 WNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITL 358 (441)
T ss_pred HHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEE
Confidence 222 2 2566666654 557999999999999999999944 33 345788875 457899999999999999
Q ss_pred EEecccccccCCCcCcCEEEEc-CC-CCCHhHHHHHhcccccCC--CCcEEEEEecCCCchHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINY-DM-AKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~-d~-p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~~~~~~l 1115 (1832)
||+|.+++||+.+|+|++++.- .- -.+-+..+|..||+||.- ..|..+.|-......+....
T Consensus 359 LiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 359 LITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred EEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 9999999999999999976632 21 137889999999999953 44776666555554444443
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.3e-21 Score=243.43 Aligned_cols=316 Identities=20% Similarity=0.245 Sum_probs=229.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-Hh
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KF 828 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~ 828 (1832)
.-...+.+.+.++.+++.++|+|.||+|||+..--.||..... .+....++|..|+|--|..+++++. +.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---------~~~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---------SGAACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---------cCCCCeEEecCCchHHHHHHHHHHHHHh
Confidence 3355677788888889999999999999999655445543321 1245679999999999988888765 45
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
+...|-.|+.-++..+... ..+.+++||.|.|++.|... ..+..+..||+||+|.-
T Consensus 244 ~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER----------------- 299 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHER----------------- 299 (924)
T ss_pred ccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEc-----------------
Confidence 6677766776666555322 25889999999999999874 47899999999999943
Q ss_pred CCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCc---------------
Q psy6409 909 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE--------------- 973 (1832)
Q Consensus 909 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~--------------- 973 (1832)
....+.+.-+++......+..++|++|||+. .+.|..+|...|.....+.......
T Consensus 300 -------~i~~DflLi~lk~lL~~~p~LkvILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~ 370 (924)
T KOG0920|consen 300 -------SINTDFLLILLKDLLPRNPDLKVILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSE 370 (924)
T ss_pred -------cCCcccHHHHHHHHhhhCCCceEEEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhccccc
Confidence 2233333334444445557799999999996 6777777777776665554332110
Q ss_pred ceEEE------------EEEcchhhH---HHHHHHHH-HcCCCCCEEEEEcccchHHHHHHHHHHc-------CCcEEEE
Q psy6409 974 RIEQI------------VYILSEQDK---RKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKL-------GYNACTL 1030 (1832)
Q Consensus 974 ~i~q~------------~~~~~~~~k---~~~L~~~l-~~~~~~~vIVFv~s~~~~~~l~~~L~~~-------g~~v~~l 1030 (1832)
...+. ......+-. +..|+..+ .....+.+|||.++..++..+.+.|... .+-+.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilpl 450 (924)
T KOG0920|consen 371 DDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPL 450 (924)
T ss_pred ccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEec
Confidence 00001 000001111 22222222 2335678999999999999999999653 2567889
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC--------CC----------CHhHHHHHhcccc
Q psy6409 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AK----------SIEDYTHRIGRTG 1092 (1832)
Q Consensus 1031 hg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~--------p~----------s~~~yvQr~GRaG 1092 (1832)
|+.|+..++..++.....|..+|++||++|+.+|.||+|.+||+.+. -. |.+...||.||||
T Consensus 451 Hs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG 530 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG 530 (924)
T ss_pred cccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc
Confidence 99999999999999999999999999999999999999999996443 22 5677899999999
Q ss_pred cCCCCcEEEEEecCCC
Q psy6409 1093 RAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1093 R~g~~G~ai~~~~~~d 1108 (1832)
|.- .|.|+.+++...
T Consensus 531 Rv~-~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 531 RVR-PGICYHLYTRSR 545 (924)
T ss_pred Ccc-CCeeEEeechhh
Confidence 985 599999999874
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=231.35 Aligned_cols=127 Identities=23% Similarity=0.335 Sum_probs=115.1
Q ss_pred EcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 981 ILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 981 ~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
+.....|...+.+.+... .+.|+||||+|+..++.|+..|...|+++..+|+ .+.+|+..+..|+.+...|+||||
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 445667888888888543 6789999999999999999999999999999997 688999999999999999999999
Q ss_pred cccccCCCc---CcC-----EEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1059 VAGRGIDIK---DVS-----MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1059 v~~rGlDip---~v~-----~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|+||+||+ +|. +||++..|.|...|.|++|||||.|.+|.+++|++.+|.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999 554 459999999999999999999999999999999999873
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=228.37 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccc
Q psy6409 1660 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~ 1737 (1832)
..+...|+..+... .+.++||||+++..|+.|+..|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34555666666543 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEeC-----CCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHH
Q psy6409 1738 GIDIKDVSMVINYD-----MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792 (1832)
Q Consensus 1738 GIDip~v~~VI~~d-----~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1792 (1832)
|+|+|++++||++| +|.+..+|+||+|||||. ..|.+++|++..+..+...+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999998 899999999999999997 6899999999876554444433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=222.54 Aligned_cols=133 Identities=23% Similarity=0.345 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccc
Q psy6409 985 QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062 (1832)
Q Consensus 985 ~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~r 1062 (1832)
..++..|+..+.. ..+.++||||+++..++.+++.|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3345555555543 35678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCcCEEEEcC-----CCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1063 GIDIKDVSMVINYD-----MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1063 GlDip~v~~VI~~d-----~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
|+|+|++++||++| +|.+..+|+||+|||||. ..|.+++|++..+..+...+.+.
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999988 799999999999999998 57999999998887766666553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=227.70 Aligned_cols=127 Identities=23% Similarity=0.335 Sum_probs=115.0
Q ss_pred EcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1656 ILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1656 ~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
+.....|..++.+.+... .+.|+||||+|+..++.|+..|...|+++.++|+ .+.+|+..+..|+.+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 455667888888888543 6789999999999999999999999999999997 688999999999999999999999
Q ss_pred cccccCCCC---CCC-----EEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1734 VAGRGIDIK---DVS-----MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1734 vl~~GIDip---~v~-----~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+++||+||+ +|. +||++..|.|...|.|++|||||.|.+|.+++|++..|.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999 553 459999999999999999999999999999999999874
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=218.36 Aligned_cols=303 Identities=26% Similarity=0.358 Sum_probs=202.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|| .|...|+-....++.|+..-++||||.|||.--++..+ ++. ..|.+++||+||..|+.|+++.+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a-----------~kgkr~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLA-----------KKGKRVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHH-----------hcCCeEEEEecCHHHHHHHHHHH
Confidence 355 89999999999999999999999999999974333332 332 25789999999999999999999
Q ss_pred HHhcCCCC-CeEEE-EECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHH
Q psy6409 1501 NKFGTPLG-IRTVL-VVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 1574 (1832)
Q Consensus 1501 ~~~~~~~g-~~v~~-l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~ 1574 (1832)
.+++...+ ..+.. ++|..+..+.. ..+.+ +.||+|+|.+-|...... +.--++++|++|.+|.++..+ ..
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lkas--kN 221 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKAS--KN 221 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhcc--cc
Confidence 99975554 33333 45554544322 23333 589999998765544332 111368999999999887654 34
Q ss_pred HHHHHHhCCCCCCC--------------CCCchhhhHHHHHh-----hhccccCcceEEEEEccCChHHH--HHHHHhcC
Q psy6409 1575 VQKILEYMPVTNLK--------------PDTEDAEDENKLLA-----NYNSKKKYRQTVMFTATMPPAVE--RLARSYLR 1633 (1832)
Q Consensus 1575 l~~Il~~l~~~~~~--------------~~~~~~~~~~~l~~-----~~~~~~~~~q~v~~SATl~~~~~--~~~~~~l~ 1633 (1832)
+..++..+....-. .............. ......+..+++..|||..+.-. .+.+..++
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 44444443311100 00000111111111 11233456789999999865432 23333333
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECc---hhHHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ---KKGADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s---~~~a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
+.++.......+|...+... .-...+.++++... .-.||||+. +..++.++++|...|+++..+|+.
T Consensus 302 ----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-- 371 (1187)
T COG1110 302 ----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-- 371 (1187)
T ss_pred ----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc--
Confidence 23344333444555444443 34445555555443 248999999 999999999999999999999984
Q ss_pred HHHHHHHHHHhhCCCCcEEEEc----ccccccCCCCC-CCEEEEeCCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMA 1753 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVAT----dvl~~GIDip~-v~~VI~~d~P 1753 (1832)
.+..++.|..|+++|||.+ .++-||||+|+ +..+|.|+.|
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3788999999999999985 57999999996 5688888777
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=235.02 Aligned_cols=322 Identities=21% Similarity=0.244 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN---R-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g---~-dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+.+.|..++..+.+. . .+++.||||+|||.+++++++..+... ....++++++.|++.++.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 4488999999988753 4 789999999999999999998655331 225789999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHH-----h---------hcCCcEEEeCHHHHHHHHHccc-cc-c--CCceeEEEcc
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFR-----L---------RLGCEIVIATPGRLIDVLENRY-LV-L--NQCTYIVLDE 1562 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~-----l---------~~~~~IiVaTP~rl~~~l~~~~-~~-l--~~v~llViDE 1562 (1832)
+.++...+.....+.|.......... . .....++++||-.+........ .. + --.+++||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765444332212333222111000 0 0013456666665554222111 11 1 1347899999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
+|.+-+......+..++..+. .....+|++|||+|+.........+.....+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~------------------------~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~ 402 (733)
T COG1203 347 VHLYADETMLAALLALLEALA------------------------EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENA 402 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH------------------------hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccc
Confidence 997655433333333333322 12356999999999999998888877655544321
Q ss_pred cCCC---CcceEEEEEEcchhhHH-HHHHHHHH--hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1643 VGKP---TERIEQIVYILSEQDKR-KKLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1643 ~~~~---~~~i~q~~~~~~~~~k~-~~l~~~l~--~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
...+ ...+.+..... ..... ..+..... -...++++|.|||+..|..++..|+..+..+..+||.++..+|..
T Consensus 403 ~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ 481 (733)
T COG1203 403 KFCPKEDEPGLKRKERVD-VEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREE 481 (733)
T ss_pred cccccccccccccccchh-hhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHH
Confidence 1000 00011110000 00000 01111111 125679999999999999999999998888999999999999988
Q ss_pred HHHHh----hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCC--CccEEEEEeeCC
Q psy6409 1717 ALNSL----KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKD 1782 (1832)
Q Consensus 1717 il~~F----~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~ 1782 (1832)
.++.+ +.+...|+|||.+.+.|||+ +++++|-==.| +.+.+||+||++|.| ..|.++++....
T Consensus 482 ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 482 KERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 77754 45788899999999999999 58877665445 999999999999998 567777776654
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=230.23 Aligned_cols=324 Identities=21% Similarity=0.241 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHcC---C-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQN---R-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~g---r-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.+.+.|..++..+..+ . .+++.||||+|||.+++++++..+... .....+++++.|++.++.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 3488899999888863 4 789999999999999999998765321 235789999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHH-----H---------hcCCceeecCHHHHHHHHHcccc-c-c--CCceeEEEec
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFR-----L---------RLGCEIVIATPGRLIDVLENRYL-V-L--NQCTYIVLDE 887 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~-----l---------~~~~~IlV~TP~rL~d~l~~~~~-~-l--~~~~~lViDE 887 (1832)
..+....++......|.....-.... . .....+.++||-.+........- . + =..+++||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765544433322332221100000 0 01134555665554442221111 1 1 1347899999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
+|.+.+..--..+..++..+. .....+|++|||+|+........++.....+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~------------------------~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~ 402 (733)
T COG1203 347 VHLYADETMLAALLALLEALA------------------------EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENA 402 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH------------------------hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccc
Confidence 997665432222222222221 12356999999999999998888877665554431
Q ss_pred cCCCC---cceEEEEEEcchhhHH-HHHHHHH--HcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 968 VGKPT---ERIEQIVYILSEQDKR-KKLMEVL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041 (1832)
Q Consensus 968 ~~~~~---~~i~q~~~~~~~~~k~-~~L~~~l--~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 1041 (1832)
...+. ..+.+... ....... ..+.... ....+.+++|-|||+..|..++..|+..+..++.+||.++..+|..
T Consensus 403 ~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ 481 (733)
T COG1203 403 KFCPKEDEPGLKRKER-VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREE 481 (733)
T ss_pred cccccccccccccccc-hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHH
Confidence 11000 00111100 0000110 0111111 1235678999999999999999999998888999999999999988
Q ss_pred HHHHH----hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCC--CCcEEEEEecCCCc
Q psy6409 1042 ALNSL----KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1042 il~~F----~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~ 1109 (1832)
.++.+ +.+...|+|||.+.+.||||. .+++|-= +..+.+.+||+||++|-| ..|.++.+......
T Consensus 482 ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 482 KERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred HHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 87754 457888999999999999994 7766643 456889999999999999 55777777666543
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=214.32 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=124.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
+| .|..+|.+.+..+-.+..++++|||.+|||++....|=.+++. .+...||+++||++|+.|+.....
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe----------sD~~VVIyvaPtKaLVnQvsa~Vy 577 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE----------SDSDVVIYVAPTKALVNQVSANVY 577 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh----------cCCCEEEEecchHHHhhhhhHHHH
Confidence 34 6889999999999999999999999999999876666555543 356789999999999999988887
Q ss_pred Hhc-CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc---ccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1502 KFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1502 ~~~-~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~---~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
..+ ...-.+.+.+.|..+.+.+... -+|.|+|+-|+.+..+|... .-...+++++|+||+|.+....-.-..+.
T Consensus 578 aRF~~~t~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq 655 (1330)
T KOG0949|consen 578 ARFDTKTFLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQ 655 (1330)
T ss_pred HhhccCccccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHH
Confidence 665 3333445566676665544331 25999999999999988773 34678999999999998876554545566
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHH
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~ 1624 (1832)
++..+| +.++++|||+.+..
T Consensus 656 ll~li~---------------------------CP~L~LSATigN~~ 675 (1330)
T KOG0949|consen 656 LLLLIP---------------------------CPFLVLSATIGNPN 675 (1330)
T ss_pred HHHhcC---------------------------CCeeEEecccCCHH
Confidence 655554 56899999987653
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=222.51 Aligned_cols=315 Identities=21% Similarity=0.261 Sum_probs=205.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+.|||.+++.+++ .|.+.|++-..|.|||+..+. ++.++... ......+|||||. .|..|+..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~--------~~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY--------RGITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh--------cCCCCCEEEEeCh-HHHHHHHHHH
Confidence 78999999999886 578899999999999997543 33333221 1123458999996 6778899999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHH---HhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGF---RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
.+++. .++++.++|......... ......+|+|+|.+.+.... ..+.--.+++|||||||++-.. ...+..
T Consensus 239 ~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~--~Sklsk 312 (1033)
T PLN03142 239 RRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNE--NSLLSK 312 (1033)
T ss_pred HHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCH--HHHHHH
Confidence 99874 356677777654322211 11235789999998775432 1223345789999999987432 222333
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHHHHHHh-cCCCcEEE----------------
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSY-LRRPATVY---------------- 1639 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~~~~~~-l~~p~~v~---------------- 1639 (1832)
++..+. ....+++|+|+-. .+.+++..+ +-.|..+.
T Consensus 313 alr~L~--------------------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~ 366 (1033)
T PLN03142 313 TMRLFS--------------------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND 366 (1033)
T ss_pred HHHHhh--------------------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccc
Confidence 333332 1123566666421 111111100 00000000
Q ss_pred ------------------Ec--c--cCCCCcceEEEEEE-----------------------------------------
Q psy6409 1640 ------------------IG--S--VGKPTERIEQIVYI----------------------------------------- 1656 (1832)
Q Consensus 1640 ------------------i~--~--~~~~~~~i~q~~~~----------------------------------------- 1656 (1832)
.. . ...|. .....+.+
T Consensus 367 ~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp-K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~c 445 (1033)
T PLN03142 367 QQEVVQQLHKVLRPFLLRRLKSDVEKGLPP-KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCC 445 (1033)
T ss_pred hHHHHHHHHHHhhHHHhhhhHHHHhhhCCC-ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 00 0 00000 00000000
Q ss_pred ---------------------cchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 1657 ---------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1657 ---------------------~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~ 1713 (1832)
+....|...|..++... .+.+||||+......+.|...|...++....+||+++..+
T Consensus 446 nHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~e 525 (1033)
T PLN03142 446 NHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGED 525 (1033)
T ss_pred CCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 01123333444444332 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC---CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccE--EEEEeeCC
Q psy6409 1714 RELALNSLKGG---SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1782 (1832)
Q Consensus 1714 R~~il~~F~~g---~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~ 1782 (1832)
|..+++.|... ..-+|++|.+++.|||+..+++||+||.|+|+..+.|++||+-|.|+... ++.|++.+
T Consensus 526 Rq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 526 RDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred HHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999753 34578999999999999999999999999999999999999999998754 44456665
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=204.50 Aligned_cols=166 Identities=22% Similarity=0.308 Sum_probs=132.9
Q ss_pred cceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhH
Q psy6409 1610 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1610 ~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~ 1687 (1832)
..|+|++|||+.+.-...... . .+...-+|...+...+...+.......|+.-+.. ..+.++||-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~----vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---N----VVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---c----eeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 359999999987654322211 1 1112223444444555566666666666666554 256899999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeC-----CCCCHHHHHHH
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD-----MAKSIEDYTHR 1762 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d-----~P~s~~~yiQR 1762 (1832)
|+.|..+|..+|+.+.++|++...-+|.+++..++.|.++|||.-++|-+|+|+|+|++|..+| +..|..+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 46799999999
Q ss_pred hcccccCCCccEEEEEeeCCC
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|||+| +-.|.+++|...-.
T Consensus 539 IGRAAR-N~~GkvIlYAD~iT 558 (663)
T COG0556 539 IGRAAR-NVNGKVILYADKIT 558 (663)
T ss_pred HHHHhh-ccCCeEEEEchhhh
Confidence 999999 45799999987643
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-18 Score=212.12 Aligned_cols=306 Identities=26% Similarity=0.370 Sum_probs=202.8
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.+++ .|| .|...|.-....++.|+..-++||||.|||.- .+.+-.++ ...|.+++||+||..|+.
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~-----------a~kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYL-----------AKKGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHH-----------HhcCCeEEEEecCHHHHH
Confidence 34444 355 89999999999999999999999999999974 44333333 235789999999999999
Q ss_pred HHHHHHHHhcCCCC-CeEEE-EEcCCchHHHH---HHHhc-CCceeecCHHHHHHHHHccccccC--CceeEEEecchhh
Q psy6409 820 QIEEETNKFGTPLG-IRTVL-VVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEADRM 891 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~-i~v~~-~~Gg~~~~~~~---~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH~l 891 (1832)
|+++.+.+++...+ ..+.. ++|..+..+.. ..+.+ +.+|+|+|.+-|...+. .|. ++++|++|.+|-+
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH----HhcccCCCEEEEccHHHH
Confidence 99999999976655 44333 44544433322 23333 58999999876644332 344 6899999999987
Q ss_pred hcCCChHHHHHHHHhCCCCCC--------------CCCCchhHHHHHHHHh-----hccccccceEEEEEecCChHHH--
Q psy6409 892 IDMGFEPDVQKILEYMPVTNL--------------KPDTEDAEDENKLLAN-----YNSKKKYRQTVMFTATMPPAVE-- 950 (1832)
Q Consensus 892 ~d~gf~~~i~~Il~~l~~~~~--------------~~~~~~~~~~~~ll~~-----~~~~~~~~q~v~~SATl~~~v~-- 950 (1832)
+-.+ ..+..++..+....- .............++. .....+.-+++..|||..+.-.
T Consensus 216 Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~ 293 (1187)
T COG1110 216 LKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL 293 (1187)
T ss_pred Hhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchH
Confidence 7544 233333333211000 0000111112222111 1234456789999999855432
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcc---cchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ---KKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s---~~~~~~l~~~L~~~g~~v 1027 (1832)
.+.+..++ +.++.......++...+... .....+.++++... .-.||||+. ++.++.++++|+..|+++
T Consensus 294 ~LfReLlg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 294 KLFRELLG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINA 365 (1187)
T ss_pred HHHHHHhC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceE
Confidence 23333332 34444333344444443333 34445555555432 348999999 899999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEec----ccccccCCCcC-cCEEEEcCCC
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMA 1078 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaT----dv~~rGlDip~-v~~VI~~d~p 1078 (1832)
..+|++ ....++.|..|+++|||++ .++-||||+|. +.++|.|+.|
T Consensus 366 ~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 366 ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999984 3788999999999999987 58999999997 4588988875
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=211.98 Aligned_cols=326 Identities=22% Similarity=0.310 Sum_probs=217.6
Q ss_pred CCCCcHHHHHHHHHHHcC----CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQN----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~g----rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
...+++-|..|+..+... .-.++.|.||||||.+|+-.|-..+. .|..+|||+|-.+|-.|+..
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------------~GkqvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------------QGKQVLVLVPEIALTPQLLA 263 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------------cCCEEEEEeccccchHHHHH
Confidence 357788999999999765 56899999999999999887766552 47899999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHH---HHHHh-cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQ---GFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 899 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~ 899 (1832)
.|+.. +|.++..++++.+..+. |.... ....|||||-..+ ...+.++.+|||||=|-- .|..+
T Consensus 264 rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~---sYKq~ 330 (730)
T COG1198 264 RFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDS---SYKQE 330 (730)
T ss_pred HHHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccc---cccCC
Confidence 99986 45788899999886554 33333 3489999996655 346889999999999932 11100
Q ss_pred HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE
Q psy6409 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979 (1832)
Q Consensus 900 i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~ 979 (1832)
........-++.+........+|+-|||.. ++.+....-.....+...............+
T Consensus 331 -----------------~~prYhARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~i 391 (730)
T COG1198 331 -----------------DGPRYHARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEI 391 (730)
T ss_pred -----------------cCCCcCHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceE
Confidence 000011112333334445688999999964 6655544222122222222111111111111
Q ss_pred EEcc-hhhHH-----HHHHHHHHc--CCCCCEEEEEcccc----------------------------------------
Q psy6409 980 YILS-EQDKR-----KKLMEVLNR--GVKKPVIIFVNQKK---------------------------------------- 1011 (1832)
Q Consensus 980 ~~~~-~~~k~-----~~L~~~l~~--~~~~~vIVFv~s~~---------------------------------------- 1011 (1832)
..+. +.... ..|++.+.. ..+.++|+|+|.+.
T Consensus 392 iDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 392 IDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ 471 (730)
T ss_pred EeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC
Confidence 1111 11111 233443322 25667888888765
Q ss_pred --------------------hHHHHHHHHHHc--CCcEEEEcCCCCHHH--HHHHHHHHhCCCCcEEEecccccccCCCc
Q psy6409 1012 --------------------GADVLAKGLEKL--GYNACTLHGGKGQEQ--RELALNSLKGGSKDILVATDVAGRGIDIK 1067 (1832)
Q Consensus 1012 --------------------~~~~l~~~L~~~--g~~v~~lhg~~~~~~--R~~il~~F~~G~~~VLVaTdv~~rGlDip 1067 (1832)
.++.+.+.|... +..+..+.++.+... -+..++.|.+|+.+|||.|.+++.|.|+|
T Consensus 472 ~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp 551 (730)
T COG1198 472 EPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFP 551 (730)
T ss_pred CCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcc
Confidence 244444444443 456666777665543 46789999999999999999999999999
Q ss_pred CcCEEEEcCCCC------------CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1068 DVSMVINYDMAK------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1068 ~v~~VI~~d~p~------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
++++|...|.-. ...-++|-.|||||.+..|.+++-+...|-..+..+..
T Consensus 552 ~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 552 NVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred cceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 999888554421 35568999999999999999999888887666666544
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=222.74 Aligned_cols=354 Identities=18% Similarity=0.215 Sum_probs=205.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~----~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
+.+.+.+.+...||+ ++|.|.+.+. .+..++++++.||||+|||++|++|++.+.. .+.+++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------~~~~vvi 297 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------TEKPVVI 297 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------------CCCeEEE
Confidence 344677788888996 8899998666 4446889999999999999999999986542 2458999
Q ss_pred EccchhHHHHHHH-HHHHhcCCCC--CeEEEEEcCCchH-----HH----------------------------------
Q psy6409 811 MAPTRELAQQIEE-ETNKFGTPLG--IRTVLVVGGLSRE-----EQ---------------------------------- 848 (1832)
Q Consensus 811 laPtreLa~Qi~~-~~~~~~~~~~--i~v~~~~Gg~~~~-----~~---------------------------------- 848 (1832)
.+||++|+.|+.. .+..+.+.++ ++++.+.|+...- .+
T Consensus 298 ~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~ 377 (850)
T TIGR01407 298 STNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELN 377 (850)
T ss_pred EeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhcc
Confidence 9999999999865 4555544334 7777777755320 00
Q ss_pred --------HH------------------------HHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-
Q psy6409 849 --------GF------------------------RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG- 895 (1832)
Q Consensus 849 --------~~------------------------~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g- 895 (1832)
+. .....++|||+...-|+..+......+....+|||||||+|.+..
T Consensus 378 ~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~ 457 (850)
T TIGR01407 378 LKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAE 457 (850)
T ss_pred CCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHH
Confidence 00 001136789998887776664443345667899999999987521
Q ss_pred --Ch-----HHHHHHHHhCCC----------------------CCCCC-CC----------------------c-hhHHH
Q psy6409 896 --FE-----PDVQKILEYMPV----------------------TNLKP-DT----------------------E-DAEDE 922 (1832)
Q Consensus 896 --f~-----~~i~~Il~~l~~----------------------~~~~~-~~----------------------~-~~~~~ 922 (1832)
|+ ..+..++..+.. ..... .. . .....
T Consensus 458 ~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 537 (850)
T TIGR01407 458 NQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQL 537 (850)
T ss_pred HHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 00 011111111000 00000 00 0 00000
Q ss_pred HHHHHh---------------------hc-----------c-------------ccccceEEEEEecCCh--HHHHHHHH
Q psy6409 923 NKLLAN---------------------YN-----------S-------------KKKYRQTVMFTATMPP--AVERLARS 955 (1832)
Q Consensus 923 ~~ll~~---------------------~~-----------~-------------~~~~~q~v~~SATl~~--~v~~~~~~ 955 (1832)
...+.. .. . ......+|++|||+.. ....+...
T Consensus 538 ~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~ 617 (850)
T TIGR01407 538 RKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQL 617 (850)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHh
Confidence 000000 00 0 0112468899999963 12323222
Q ss_pred hc-CCCcEEEE-cccCCCCcceEEE-EEE---c------chhhHHHH----HHHHHHcCCCCCEEEEEcccchHHHHHHH
Q psy6409 956 YL-RRPATVYI-GSVGKPTERIEQI-VYI---L------SEQDKRKK----LMEVLNRGVKKPVIIFVNQKKGADVLAKG 1019 (1832)
Q Consensus 956 ~l-~~p~~v~~-~~~~~~~~~i~q~-~~~---~------~~~~k~~~----L~~~l~~~~~~~vIVFv~s~~~~~~l~~~ 1019 (1832)
+. .+.....+ .+... .-.+. ++. + +...-... +.+++. ..++++|||++|....+.++..
T Consensus 618 lGl~~~~~~~~~~spf~---~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~ 693 (850)
T TIGR01407 618 LGLTDVHFNTIEPTPLN---YAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDM 693 (850)
T ss_pred cCCCccccceecCCCCC---HHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHH
Confidence 21 12111122 11111 01111 111 0 11111222 233333 3457899999999999999999
Q ss_pred HHHcC--CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC--EEEEcCCCC----------------
Q psy6409 1020 LEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS--MVINYDMAK---------------- 1079 (1832)
Q Consensus 1020 L~~~g--~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~--~VI~~d~p~---------------- 1079 (1832)
|.... .....+..+.. ..|..+++.|++|+..||+||+.+.+|||+|+.. +||...+|.
T Consensus 694 L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~ 772 (850)
T TIGR01407 694 LNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLE 772 (850)
T ss_pred HhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 97521 12223333333 5789999999999999999999999999999987 555566542
Q ss_pred --------------CHhHHHHHhcccccCCCCcEEEEEecC
Q psy6409 1080 --------------SIEDYTHRIGRTGRAGKEGLAVSFCTK 1106 (1832)
Q Consensus 1080 --------------s~~~yvQr~GRaGR~g~~G~ai~~~~~ 1106 (1832)
.+..+.|-+||.=|...+.-+++++..
T Consensus 773 ~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 773 QEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred HhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 123467999999997765334444443
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=213.73 Aligned_cols=303 Identities=22% Similarity=0.327 Sum_probs=205.0
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH-hcCCCCCe
Q psy6409 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIR 1510 (1832)
Q Consensus 1432 ~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~-~~~~~g~~ 1510 (1832)
+.+.++-...-+|+++|||||||.. +|.+.+ ..+ -..+..+.+.-|.|--|.-++..+.. ++...|-.
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTq--lP~~ll--e~g-------~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQ--LPQFLL--EEG-------LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHH--HHHHHH--hhh-------cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 3344455566789999999999985 444321 111 13456899999998666666666543 44444433
Q ss_pred EEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh-hhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFEPDVQKILEYMPVTNLKP 1589 (1832)
Q Consensus 1511 v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~-ll~~gf~~~l~~Il~~l~~~~~~~ 1589 (1832)
|+.-+-..+ .......|-+.|.|.|+..+.+... |+.+++|||||||. -++.+| ++..+
T Consensus 126 VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDi------lLgll------- 185 (845)
T COG1643 126 VGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDI------LLGLL------- 185 (845)
T ss_pred eeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHH------HHHHH-------
Confidence 332221111 1123578999999999999887664 89999999999993 111111 11111
Q ss_pred CCchhhhHHHHHhh-hccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE-EEcchhh-HHHHH
Q psy6409 1590 DTEDAEDENKLLAN-YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV-YILSEQD-KRKKL 1666 (1832)
Q Consensus 1590 ~~~~~~~~~~l~~~-~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~-~~~~~~~-k~~~l 1666 (1832)
.. ....+....+|.+|||+... .+. .|+.+...+.+.....|. +-.| ....... -...+
T Consensus 186 ------------k~~~~~rr~DLKiIimSATld~~--rfs-~~f~~apvi~i~GR~fPV---ei~Y~~~~~~d~~l~~ai 247 (845)
T COG1643 186 ------------KDLLARRRDDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGRTYPV---EIRYLPEAEADYILLDAI 247 (845)
T ss_pred ------------HHHHhhcCCCceEEEEecccCHH--HHH-HHcCCCCEEEecCCccce---EEEecCCCCcchhHHHHH
Confidence 11 11122347899999999653 344 455555555555444443 2222 1111222 22333
Q ss_pred HHHH---HhCCCCcEEEEECchhHHHHHHHHHHH--c--CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1667 MEVL---NRGVKKPVIIFVNQKKGADVLAKGLEK--L--GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1667 ~~~l---~~~~~~~vIVFv~s~~~a~~l~~~L~~--~--~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
...+ .....+.+|||.+.....+.+++.|.. + .+.+..+||.|+.+++..+++---.|+-+|++||++++.+|
T Consensus 248 ~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSL 327 (845)
T COG1643 248 VAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSL 327 (845)
T ss_pred HHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccce
Confidence 3333 334678999999999999999999987 3 47789999999999999998888888777999999999999
Q ss_pred CCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1740 DIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1740 Dip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
-||+|..||.-+. |-|-++..||.|||||-+ +|.|+=+++.++.
T Consensus 328 TI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 328 TIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred eeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 9999999997433 458889999999999975 8999999998543
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=208.60 Aligned_cols=130 Identities=23% Similarity=0.345 Sum_probs=113.4
Q ss_pred HHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 987 KRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 987 k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
+...|++.+.. ..+.++||||+++..++.+++.|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34555555543 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCC-----CCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1065 DIKDVSMVINYDM-----AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1065 Dip~v~~VI~~d~-----p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
|+|++++||++|. |.+..+|+||+|||||. ..|.|++|++..+..+...+.+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~ 567 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDE 567 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHH
Confidence 9999999998875 78999999999999996 6799999999766544444433
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=206.01 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=116.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|..+|.+.+..+=.+..++++|||.+|||.+---.|=..+. ..+...+|+++||++|+.|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLR----------esD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLR----------ESDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHh----------hcCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999999999999999999999999874444433321 2356689999999999999988887654
Q ss_pred -CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc---ccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 830 -TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 830 -~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~---~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
...-.+...+.|....+-+.. .-.|+|+|+-|+.+-.+|... .-....++++|+||+|.+....-+-.++.++.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 333334445555554332222 126999999999998777663 33677899999999998876554445555555
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 948 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~ 948 (1832)
..| +.++++|||+.+.
T Consensus 659 li~---------------------------CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LIP---------------------------CPFLVLSATIGNP 674 (1330)
T ss_pred hcC---------------------------CCeeEEecccCCH
Confidence 443 5689999998653
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=217.41 Aligned_cols=358 Identities=16% Similarity=0.182 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~----~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
+++...+.+...||. ++|.|.+++. .+..++++++.||||+|||++|++|++.+.. .+.++||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------~~~~vvi 297 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------TEKPVVI 297 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------------CCCeEEE
Confidence 445677788888995 8999998776 4446889999999999999999999986542 2457999
Q ss_pred EcCcHHHHHHHHH-HHHHhcCCCC--CeEEEEECCcchH-----------------HH----------------------
Q psy6409 1486 MAPTRELAQQIEE-ETNKFGTPLG--IRTVLVVGGLSRE-----------------EQ---------------------- 1523 (1832)
Q Consensus 1486 LaPtreLa~Qi~~-~~~~~~~~~g--~~v~~l~gg~~~~-----------------~~---------------------- 1523 (1832)
.+||++|..|+.. .+..+.+.++ ++++.+.|+...- ..
T Consensus 298 ~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~ 377 (850)
T TIGR01407 298 STNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELN 377 (850)
T ss_pred EeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhcc
Confidence 9999999999754 5555544333 6777777644210 00
Q ss_pred --------H------------------------HHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC-
Q psy6409 1524 --------G------------------------FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG- 1570 (1832)
Q Consensus 1524 --------~------------------------~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g- 1570 (1832)
+ ......++|||+.-.-|..-+......+....+|||||||+|.+..
T Consensus 378 ~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~ 457 (850)
T TIGR01407 378 LKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAE 457 (850)
T ss_pred CCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHH
Confidence 0 0001236888988877766554333334556899999999976421
Q ss_pred ------C-hHHHHHHHHhCCC----------------------CCCCCCC-----------------------c-hhhhH
Q psy6409 1571 ------F-EPDVQKILEYMPV----------------------TNLKPDT-----------------------E-DAEDE 1597 (1832)
Q Consensus 1571 ------f-~~~l~~Il~~l~~----------------------~~~~~~~-----------------------~-~~~~~ 1597 (1832)
+ ...+..++..+.. ....... . .....
T Consensus 458 ~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 537 (850)
T TIGR01407 458 NQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQL 537 (850)
T ss_pred HHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 0 0011111110000 0000000 0 00000
Q ss_pred HHHHhh---------------------hc-----------c-------------ccCcceEEEEEccCChH-HHHHHHHh
Q psy6409 1598 NKLLAN---------------------YN-----------S-------------KKKYRQTVMFTATMPPA-VERLARSY 1631 (1832)
Q Consensus 1598 ~~l~~~---------------------~~-----------~-------------~~~~~q~v~~SATl~~~-~~~~~~~~ 1631 (1832)
...... .. . ......+|++|||++.. -.......
T Consensus 538 ~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~ 617 (850)
T TIGR01407 538 RKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQL 617 (850)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHh
Confidence 000000 00 0 01224688999999732 11222222
Q ss_pred cC--CCcEEEEcccCCC-CcceEEEEEE--c------chhhHHHHHHHHHH---hCCCCcEEEEECchhHHHHHHHHHHH
Q psy6409 1632 LR--RPATVYIGSVGKP-TERIEQIVYI--L------SEQDKRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEK 1697 (1832)
Q Consensus 1632 l~--~p~~v~i~~~~~~-~~~i~q~~~~--~------~~~~k~~~l~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~ 1697 (1832)
+. +.....+.+.... .... ..+.. . +...-...+...+. ....+++|||++|....+.++..|..
T Consensus 618 lGl~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 618 LGLTDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred cCCCccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 22 2111222111111 0111 11111 1 11111222322222 23457899999999999999999975
Q ss_pred cC--CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCC--EEEEeCCCC-------------------
Q psy6409 1698 LG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS--MVINYDMAK------------------- 1754 (1832)
Q Consensus 1698 ~~--~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~--~VI~~d~P~------------------- 1754 (1832)
.. .+..++..+.. ..|..+++.|++|+..||+||+.+.+|||+|+.. +||...+|.
T Consensus 697 ~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 697 LPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred hccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 21 12223333333 5789999999999999999999999999999876 566666552
Q ss_pred -----------CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1755 -----------SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1755 -----------s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
.+..+.|-+||.-|..+.--++++++..
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 2234679999999976543344444443
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-17 Score=213.88 Aligned_cols=122 Identities=25% Similarity=0.355 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEccccccc
Q psy6409 1661 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~G 1738 (1832)
.+...+...+... .+.++||||+++..|+.|+..|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455666655543 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCC-----CCCHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1739 IDIKDVSMVINYDM-----AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1739 IDip~v~~VI~~d~-----P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|+|++++||++|. |.+..+|+||+|||||. ..|.|++|++..+
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~ 558 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKIT 558 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCC
Confidence 99999999999874 78999999999999996 7899999999643
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=212.31 Aligned_cols=340 Identities=19% Similarity=0.241 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
++.|||.+++.-++ .|.+.|++-+.|.|||+..+.. +.++... ......+|||||. .|..|+..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~--------~~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEY--------RGITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHh--------cCCCCCEEEEeCh-HHHHHHHHHH
Confidence 68899999998765 4778999999999999975443 3333211 1123458999996 6678899999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHH---HhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-------
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFR---LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG------- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~---l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g------- 895 (1832)
.+++. .++++.++|.......... .....+|+|+|++.+.... ..+.--.+.+|||||||++-+..
T Consensus 239 ~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~~Sklskal 314 (1033)
T PLN03142 239 RRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNENSLLSKTM 314 (1033)
T ss_pred HHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCHHHHHHHHH
Confidence 99874 3566667775443222111 1235789999999886432 22333467899999999865421
Q ss_pred ------------------ChHHHHHHHHhCCCCCCCCC-------------CchhH---HHHHHHHh---------hccc
Q psy6409 896 ------------------FEPDVQKILEYMPVTNLKPD-------------TEDAE---DENKLLAN---------YNSK 932 (1832)
Q Consensus 896 ------------------f~~~i~~Il~~l~~~~~~~~-------------~~~~~---~~~~ll~~---------~~~~ 932 (1832)
...++-.++..+.... ... ..... .+..++.. +...
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~-f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~ 393 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEI-FSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG 393 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCc-CCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh
Confidence 0111122222221000 000 00000 01111111 1111
Q ss_pred cccceEEEEEecCChHHHHHHHHh---------------------------cCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 933 KKYRQTVMFTATMPPAVERLARSY---------------------------LRRPATVYIGSVGKPTERIEQIVYILSEQ 985 (1832)
Q Consensus 933 ~~~~q~v~~SATl~~~v~~~~~~~---------------------------l~~p~~v~~~~~~~~~~~i~q~~~~~~~~ 985 (1832)
-+......+...|++.-..+...+ ...|..+.-.....+ .......+...
T Consensus 394 LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~---~~~~e~lie~S 470 (1033)
T PLN03142 394 LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP---YTTGEHLVENS 470 (1033)
T ss_pred CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCc---ccchhHHhhhh
Confidence 112222233333433222211111 122221110000000 00000112334
Q ss_pred hHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC---CCcEEEecccc
Q psy6409 986 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG---SKDILVATDVA 1060 (1832)
Q Consensus 986 ~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G---~~~VLVaTdv~ 1060 (1832)
.|+..|..+|.. ..+.++|||+......+.|.++|...|+.++.+||+++..+|..+++.|... .+-+|++|.++
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAG 550 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAG 550 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccc
Confidence 566666666653 3567999999999999999999999999999999999999999999999753 34579999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
+.|||+..+++||+||++.++....|++||+-|.|+.. .++.|++.+
T Consensus 551 GlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 551 GLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999874 455666665
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=186.03 Aligned_cols=189 Identities=42% Similarity=0.666 Sum_probs=165.2
Q ss_pred ccccCCCCChhhhhhcccccCC-CcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 3 EKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 3 ~~~~~~~~~p~Q~~~ip~~l~g-~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
..+++.+|+|.|.++++.++.+ +.++++++||||||.+++++++..+... ....+||++||++|+.|+.
T Consensus 2 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 2 EKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG----------KGKRVLVLVPTRELAEQWA 71 (201)
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc----------CCCcEEEEeCCHHHHHHHH
Confidence 5688999999999999999999 9999999999999999999999766432 1356999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCc-cEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~-~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+.+.++..........+++|.....+...+..++ +|+++||++|.+.+..+......+.++||||||.+...++...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9999988766656777888888777777787777 999999999999999887888899999999999999888999998
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.++..++ +
T Consensus 152 ~~~~~~~------------------------------------------------------------------------~ 159 (201)
T smart00487 152 KLLKLLP------------------------------------------------------------------------K 159 (201)
T ss_pred HHHHhCC------------------------------------------------------------------------c
Confidence 8887662 1
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
-.+.+++|||.|..+...+..|+.+++.+..+.
T Consensus 160 ~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 160 NVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred cceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 267899999999999999999999999998776
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=198.60 Aligned_cols=340 Identities=22% Similarity=0.263 Sum_probs=234.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|+ .|+++|.-..-.++.|+ |+.+.||+|||+++.+|++.... .|..+-|++|+--||.|-++.+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL------------~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL------------QGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH------------cCCCeEEEcCCHHHHHHHHHHH
Confidence 465 79999999999988885 78999999999999999986542 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHcc------ccccCCceeEEEecchhhhcC-C--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENR------YLVLNQCTYIVLDEADRMIDM-G-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~------~~~l~~~~~lViDEaH~l~d~-g-- 895 (1832)
..+...+|++|+++.++.+..+..... .|+|+++|..-+- |.|... ......+.+.||||||.|+=+ .
T Consensus 140 ~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 140 GPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred HHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 999999999999999988866544443 6999999987653 333222 224456889999999976521 1
Q ss_pred ------------ChHHHHHHHHhCCCC-----------------------------CCCCCCch-hH-------------
Q psy6409 896 ------------FEPDVQKILEYMPVT-----------------------------NLKPDTED-AE------------- 920 (1832)
Q Consensus 896 ------------f~~~i~~Il~~l~~~-----------------------------~~~~~~~~-~~------------- 920 (1832)
....+..++..+... ++ .+..+ ..
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~l-y~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDL-YSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccc-cCcchhHHHHHHHHHHHHHHH
Confidence 111122222222110 00 00000 00
Q ss_pred ---------------------------------HHHHHHHhh------------------ccccccceEEEEEecCChHH
Q psy6409 921 ---------------------------------DENKLLANY------------------NSKKKYRQTVMFTATMPPAV 949 (1832)
Q Consensus 921 ---------------------------------~~~~ll~~~------------------~~~~~~~q~v~~SATl~~~v 949 (1832)
.+...+..- .-.+.+..+.++|.|.....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 000000000 00123456888999988777
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCc
Q psy6409 950 ERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026 (1832)
Q Consensus 950 ~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~ 1026 (1832)
+.|...|--+ + + .-+...+...... -..+.....|...+.+-+.. ..+.||||.+.+....+.++..|...|++
T Consensus 377 ~Ef~~iY~l~-V-v-~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 377 EQLRQFYDLG-V-S-VIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred HHHHHHhCCc-E-E-ECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 7776666433 2 2 2222333322221 13344566677777665543 36779999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc---------------CcCEEEEcCCCCCHhHHHHHhccc
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------DVSMVINYDMAKSIEDYTHRIGRT 1091 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------------~v~~VI~~d~p~s~~~yvQr~GRa 1091 (1832)
..++++.-...+-..|-+.-+.| .|.|||++|+||.||. +==+||-...+.|..-=.|-.|||
T Consensus 454 h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 454 AVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred ceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 99999874443333333333333 5899999999999986 223899888999999999999999
Q ss_pred ccCCCCcEEEEEecCCC
Q psy6409 1092 GRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1092 GR~g~~G~ai~~~~~~d 1108 (1832)
||-|.+|.+-.|++-+|
T Consensus 532 GRQGDpGss~f~lSleD 548 (764)
T PRK12326 532 GRQGDPGSSVFFVSLED 548 (764)
T ss_pred ccCCCCCceeEEEEcch
Confidence 99999999999999887
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=189.70 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=127.2
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..|+|..|||..+.-..... +.-+.-.+.+.+...+. +..-+....+..|+.-+.. ..+.++||-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 46999999997654322211 11222233333333332 2233333344444444332 355789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-----CCCHhHHHHH
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1087 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yvQr 1087 (1832)
|+.|.++|.+.|+++.++|++...-+|.+++..++.|.++|||.-+++-+|||+|.|++|..+|. ..|-.+.+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876 5589999999
Q ss_pred hcccccCCCCcEEEEEecCCCchH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHL 1111 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~ 1111 (1832)
+|||+|. -.|.+|++...-...+
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHHH
Confidence 9999995 4599998876544333
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-16 Score=193.52 Aligned_cols=342 Identities=23% Similarity=0.263 Sum_probs=237.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-..-.++.|+ |+.+.||+|||+++.+|++.... .|..|-|++|+--||.|-+.++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL------------~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL------------QGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH------------cCCCeEEEcCCHHHHHHHHHHH
Confidence 576 89999999998888875 78999999999999999986543 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll~~g--- 1570 (1832)
..+...+|++|.++.++.+..+..... .|||+.+|..-+- +.|+.+. .....+.+.||||+|.++=..
T Consensus 140 ~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 140 GPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred HHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 999999999999999988866544333 5899999987653 4444332 234568999999999754210
Q ss_pred ------------ChHHHHHHHHhCCCCC----------------------------CCCCCch-hh---h-HHHHHhh--
Q psy6409 1571 ------------FEPDVQKILEYMPVTN----------------------------LKPDTED-AE---D-ENKLLAN-- 1603 (1832)
Q Consensus 1571 ------------f~~~l~~Il~~l~~~~----------------------------~~~~~~~-~~---~-~~~l~~~-- 1603 (1832)
....+..+...+.... ....... .. . ...+.+.
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 1111222222221100 0000000 00 0 0000000
Q ss_pred -------------------------------------------h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1604 -------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1604 -------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
+ +.-+.+..+.++|.|.....+
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~ 377 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE 377 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH
Confidence 0 001223457799999988777
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+ +.+.+...|...... -..+.....|..++++-+.. ..+.||||.|.|+...+.|+..|...|++.
T Consensus 378 Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h 454 (764)
T PRK12326 378 QLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPA 454 (764)
T ss_pred HHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 777666433 223333444432221 13344566677777766543 367899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---------------CCCEEEEeCCCCCHHHHHHHhcccc
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------DVSMVINYDMAKSIEDYTHRIGRTG 1767 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------------~v~~VI~~d~P~s~~~yiQRiGRaG 1767 (1832)
.++++.-...+-..|-+.=+.| .|.|||+.++||.||. .=-+||-...|.|..-=-|-.||||
T Consensus 455 ~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaG 532 (764)
T PRK12326 455 VVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAG 532 (764)
T ss_pred eeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccc
Confidence 9999875544444443333333 4899999999999986 2248999999999999999999999
Q ss_pred cCCCccEEEEEeeCCCh
Q psy6409 1768 RAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1768 R~g~~G~ai~~~~~~d~ 1784 (1832)
|-|.+|.+..|++=+|.
T Consensus 533 RQGDpGss~f~lSleDd 549 (764)
T PRK12326 533 RQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cCCCCCceeEEEEcchh
Confidence 99999999999997763
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=194.19 Aligned_cols=304 Identities=18% Similarity=0.247 Sum_probs=204.9
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCC
Q psy6409 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 1509 (1832)
Q Consensus 1431 ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~ 1509 (1832)
.+.+..+-+..-+|++++||||||. .+|=+ +.+.. -.....+.+..|.|--|.-+++... +.+..+|-
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG-------~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAG-------FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcc-------cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 3455555667789999999999997 34433 22211 1122338999998877776655543 44444554
Q ss_pred eEEEEE--CCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCC
Q psy6409 1510 RTVLVV--GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587 (1832)
Q Consensus 1510 ~v~~l~--gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~ 1587 (1832)
.|+..+ .+.+. ....|.+.|-|.|+.-+.... .++++++||+||||.=.= .-+.+
T Consensus 126 ~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl--~TDiL------------ 182 (674)
T KOG0922|consen 126 EVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSL--HTDIL------------ 182 (674)
T ss_pred eeeeEEEecccCC--------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhh--HHHHH------------
Confidence 443322 12111 146799999999987766544 488999999999992000 01111
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhh----HH
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD----KR 1663 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~----k~ 1663 (1832)
..++..+...+....++++|||+... . ...|+.....+.+.....|. +..+..-+..+ -.
T Consensus 183 ----------lGlLKki~~~R~~LklIimSATlda~--k-fS~yF~~a~i~~i~GR~fPV---ei~y~~~p~~dYv~a~~ 246 (674)
T KOG0922|consen 183 ----------LGLLKKILKKRPDLKLIIMSATLDAE--K-FSEYFNNAPILTIPGRTFPV---EILYLKEPTADYVDAAL 246 (674)
T ss_pred ----------HHHHHHHHhcCCCceEEEEeeeecHH--H-HHHHhcCCceEeecCCCCce---eEEeccCCchhhHHHHH
Confidence 12222333344557899999999643 3 34555554455554444333 22222222211 22
Q ss_pred HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc
Q psy6409 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL----GY----NACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735 (1832)
Q Consensus 1664 ~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~----~~----~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl 1735 (1832)
..+.++....+.+-+|||....+..+.+++.|.+. +- -+..+||.|+.+++..+++.--.|.-+|++||+++
T Consensus 247 ~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIA 326 (674)
T KOG0922|consen 247 ITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIA 326 (674)
T ss_pred HHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEccee
Confidence 23333434456778999999999999999988764 11 24679999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCCChh
Q psy6409 1736 GRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1736 ~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~ 1785 (1832)
+..|-||.+..||.-++ |-|-++-.||.|||||.| +|.|+-+++.++.+
T Consensus 327 ETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 327 ETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred eeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 99999999999997433 568899999999999975 89999999987653
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=199.73 Aligned_cols=294 Identities=20% Similarity=0.224 Sum_probs=189.9
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGL----QNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il----~g~-dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
..|+++|..||..+. .|+ -+|+++.||+|||.+++-.|...+ + .....+||||+-+++|+.|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~-r---------~~~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLI-K---------SGWVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHH-h---------cchhheeeEEechHHHHHHHHH
Confidence 478999999998765 443 499999999999998644443333 2 3456789999999999999999
Q ss_pred HHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-----ccccCCceeEEEccchhhhcCCChH
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-----~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
.+..+... +-.+-.+.+-... ..+.|.|+|.+.+...+... .+....+++|||||||+=+ ..
T Consensus 234 af~~~~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 234 AFEDFLPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHHHhCCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 99888543 3333333322111 14789999999999888654 3456679999999999743 34
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHH-------------------hcCC
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS-------------------YLRR 1634 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~-------------------~l~~ 1634 (1832)
..+.|++++.. -++++|||+...++.-.-. ++..
T Consensus 301 ~~~~I~dYFdA---------------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvp 353 (875)
T COG4096 301 EWSSILDYFDA---------------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVP 353 (875)
T ss_pred hhHHHHHHHHH---------------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCC
Confidence 44566666531 1233466665433322222 2322
Q ss_pred CcEEEEcc----cCCCCcce--------------EEEEEEcc------hhhHH----HHHHHHHHh--CC--CCcEEEEE
Q psy6409 1635 PATVYIGS----VGKPTERI--------------EQIVYILS------EQDKR----KKLMEVLNR--GV--KKPVIIFV 1682 (1832)
Q Consensus 1635 p~~v~i~~----~~~~~~~i--------------~q~~~~~~------~~~k~----~~l~~~l~~--~~--~~~vIVFv 1682 (1832)
+..+.+.. .+-..... .+.+.... ..... ..+.+.|.. .. ..++||||
T Consensus 354 y~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa 433 (875)
T COG4096 354 YKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFA 433 (875)
T ss_pred CCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEe
Confidence 22222211 00000000 00000000 01112 233344444 21 46899999
Q ss_pred CchhHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHhhC--CCCcEEEEcccccccCCCCCCCEEEEeCCCCC
Q psy6409 1683 NQKKGADVLAKGLEKL-----GYNACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1755 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~-----~~~v~~lHg~ls~~~R~~il~~F~~--g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s 1755 (1832)
.+..||+.+...|.+. +--+..+.|.-.+. ...++.|.. .--+|.|+.+.+..|||+|.|-++|.+..-.|
T Consensus 434 ~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrS 511 (875)
T COG4096 434 KNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRS 511 (875)
T ss_pred eCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhh
Confidence 9999999999999875 23355666654433 334555543 44578999999999999999999999999999
Q ss_pred HHHHHHHhcccccC
Q psy6409 1756 IEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1756 ~~~yiQRiGRaGR~ 1769 (1832)
.+-|.||+||+-|.
T Consensus 512 ktkF~QMvGRGTRl 525 (875)
T COG4096 512 KTKFKQMVGRGTRL 525 (875)
T ss_pred HHHHHHHhcCcccc
Confidence 99999999999993
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=204.67 Aligned_cols=308 Identities=19% Similarity=0.155 Sum_probs=184.0
Q ss_pred CCcHHHHHHHHHHh----c------CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----Q------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~------g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
-|.++|..|+..++ . .+..+++.|||||||++++..+...+. ....+++|||+|+.+|..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----------~~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----------LLKNPKVFFVVDRRELDY 307 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----------hcCCCeEEEEECcHHHHH
Confidence 37889999998764 2 246899999999999987666654332 134688999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccc--cccCCc-eeEEEccchhhhcCC
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRY--LVLNQC-TYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~--~~l~~v-~llViDEaH~ll~~g 1570 (1832)
|+.+.|..++.. .. .+..+...-...+. ....|+|+|.+++...+.... .....- .+||+||||+....
T Consensus 308 Q~~~~f~~~~~~----~~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~- 380 (667)
T TIGR00348 308 QLMKEFQSLQKD----CA--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHHHhhCCC----CC--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-
Confidence 999999998532 11 11112221112222 246899999999986543321 111111 28999999986432
Q ss_pred ChHHHHHHH-HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc----CCCcEEEEcccCC
Q psy6409 1571 FEPDVQKIL-EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL----RRPATVYIGSVGK 1645 (1832)
Q Consensus 1571 f~~~l~~Il-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l----~~p~~v~i~~~~~ 1645 (1832)
.+..++ ..+| ....++||||+-..........+ ..+...+. -...
T Consensus 381 ---~~~~~l~~~~p--------------------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~-~~~A 430 (667)
T TIGR00348 381 ---ELAKNLKKALK--------------------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYF-ITDA 430 (667)
T ss_pred ---HHHHHHHhhCC--------------------------CCcEEEEeCCCcccccccccccccCCCCCeEEEee-HHHH
Confidence 233333 3443 24689999998532111010111 11111100 0000
Q ss_pred CC-cceEEE-EEE------c--------------------chh-------------------hHHHHHH-HHHHh-----
Q psy6409 1646 PT-ERIEQI-VYI------L--------------------SEQ-------------------DKRKKLM-EVLNR----- 1672 (1832)
Q Consensus 1646 ~~-~~i~q~-~~~------~--------------------~~~-------------------~k~~~l~-~~l~~----- 1672 (1832)
.. +.+..+ +.. + .+. .....+. +++.+
T Consensus 431 I~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~ 510 (667)
T TIGR00348 431 IRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFK 510 (667)
T ss_pred hhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhh
Confidence 00 000000 000 0 000 0001111 11111
Q ss_pred -CCCCcEEEEECchhHHHHHHHHHHHc-----CCcEEEEcCCCCHH---------------------HHHHHHHHhhC-C
Q psy6409 1673 -GVKKPVIIFVNQKKGADVLAKGLEKL-----GYNACTLHGGKGQE---------------------QRELALNSLKG-G 1724 (1832)
Q Consensus 1673 -~~~~~vIVFv~s~~~a~~l~~~L~~~-----~~~v~~lHg~ls~~---------------------~R~~il~~F~~-g 1724 (1832)
....+++|||.++.+|..++..|... +..+..+++..+.. ....+++.|++ +
T Consensus 511 ~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~ 590 (667)
T TIGR00348 511 ELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEE 590 (667)
T ss_pred hcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCC
Confidence 12478999999999999999988664 24455666654332 12478899976 7
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC-C--C-ccEEEEEee
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-G--K-EGLAVSFCT 1780 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~-g--~-~G~ai~~~~ 1780 (1832)
.++|||+++.+..|+|.|.+++++...+..+ ..++|.+||+.|. + + .|..+-|+.
T Consensus 591 ~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 591 NPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred CceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 8999999999999999999998887776565 4689999999993 3 2 255555544
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-16 Score=200.13 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=224.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.| ..|+++|.-.--++..| -|+.+.||+|||+++.+|++.... .|..+-|++|+--||.|-+..+
T Consensus 79 lG-m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al------------~G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL------------SGKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred hC-CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 46 47888888776666666 489999999999999999986542 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCCC-
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMGF- 896 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~gf- 896 (1832)
..+...+|++|++++++.+..+....+ .++|++||..-+ .|.|.... .....+.|+||||+|.++ |...
T Consensus 144 ~~l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 144 RPLYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred HHHhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 999999999999999988766554443 499999998876 23343321 234788999999999865 2211
Q ss_pred --------------hHHHHHHHHhCCCC------------CC------C--CCCch-hHHHHHH----------------
Q psy6409 897 --------------EPDVQKILEYMPVT------------NL------K--PDTED-AEDENKL---------------- 925 (1832)
Q Consensus 897 --------------~~~i~~Il~~l~~~------------~~------~--~~~~~-~~~~~~l---------------- 925 (1832)
...+..++..+... .. + .-++. ......+
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 11122222222100 00 0 00000 0000000
Q ss_pred ------------HHhhccc-------------------------------------------------------------
Q psy6409 926 ------------LANYNSK------------------------------------------------------------- 932 (1832)
Q Consensus 926 ------------l~~~~~~------------------------------------------------------------- 932 (1832)
+......
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence 0000000
Q ss_pred cccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcc
Q psy6409 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1009 (1832)
Q Consensus 933 ~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s 1009 (1832)
+.+..+.++|.|.......|...|--+ +..-+...|...... -..+.....|...+.+-+.. ..+.||||-+.|
T Consensus 382 r~Y~kLsGMTGTa~te~~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~S 458 (913)
T PRK13103 382 RLYNKLSGMTGTADTEAFEFRQIYGLD---VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTAT 458 (913)
T ss_pred HhcchhccCCCCCHHHHHHHHHHhCCC---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 111234445566544444444444322 222222333222222 12445666777777665543 367899999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc----------------------
Q psy6409 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1067 (1832)
Q Consensus 1010 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------------------- 1067 (1832)
.+..+.|+..|...|++..++++.....+-+.+-+.-+ .-.|.|||++|+||-||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 99999999999999999888888644333333333323 335899999999999994
Q ss_pred ---------------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1068 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1068 ---------------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+==+||--..+.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 223888888888998889999999999999999999998773
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-17 Score=188.30 Aligned_cols=347 Identities=14% Similarity=0.062 Sum_probs=234.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1415 l~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
-+.+..+.-.....+|..++..+-+|+++++.-.|.+||.++|.+.....+.. ......+++.|+++|++
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~----------~~~s~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL----------CHATNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc----------CcccceecchhHHHHhh
Confidence 34445556677889999999999999999999999999999998888765433 23445789999999987
Q ss_pred HHHHHHHHhc---CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccchhhh
Q psy6409 1495 QIEEETNKFG---TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1495 Qi~~~~~~~~---~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH~ll 1567 (1832)
...+.+.-.. +.+.--++..+.+.+......-.+.+..++++.|..+...... +...+-...+++.||+|.++
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee
Confidence 6443322111 1112235666777776666666778899999999988765533 23344456789999999654
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 1647 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~ 1647 (1832)
.. |+..+...+..+. . +...-......|++-.+||+...+......+.-+...+ +...+.|.
T Consensus 426 ~~-~~~~~~~~~R~L~---------------~-L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~L-i~~DGSPs 487 (1034)
T KOG4150|consen 426 FP-TKALAQDQLRALS---------------D-LIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELEL-VTIDGSPS 487 (1034)
T ss_pred cc-hhhHHHHHHHHHH---------------H-HHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEE-EEecCCCC
Confidence 32 3333333322221 0 00011122457899999999887765544333222221 22222222
Q ss_pred cceEEEEEEcc------hh---hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHc----C----CcEEEEcCC
Q psy6409 1648 ERIEQIVYILS------EQ---DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL----G----YNACTLHGG 1708 (1832)
Q Consensus 1648 ~~i~q~~~~~~------~~---~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~----~----~~v~~lHg~ 1708 (1832)
.-.+++.+-+ .. .+......++.. ..+-++|.||.+++-|+.+....+.. + -.+..+.||
T Consensus 488 -~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 488 -SEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred -ccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 2234444332 11 122222222221 24578999999999999877655432 1 135568899
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC--ChhH
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD--DSHL 1786 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~--d~~~ 1786 (1832)
.+.++|..+...+-.|+..-+|||++++.||||...+.|++.++|.|+.++.|..|||||.++...++.++... |..+
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777655 4444
Q ss_pred HHHH
Q psy6409 1787 FYDL 1790 (1832)
Q Consensus 1787 ~~~l 1790 (1832)
+...
T Consensus 647 ~~HP 650 (1034)
T KOG4150|consen 647 MSHP 650 (1034)
T ss_pred hcCc
Confidence 4333
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=198.44 Aligned_cols=296 Identities=21% Similarity=0.247 Sum_probs=189.5
Q ss_pred CCCCCcHHHHHHHHHHH----cCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGL----QNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il----~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
+-..|+++|..||..+. +|++ +++++.||+|||.+++--|. .|.+ .....++|||+-+++|+.|.
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r---------~~~~KRVLFLaDR~~Lv~QA 231 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIK---------SGWVKRVLFLADRNALVDQA 231 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHh---------cchhheeeEEechHHHHHHH
Confidence 34578999999998765 3543 99999999999998655443 3322 34567899999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-----ccccCCceeEEEecchhhhcCCC
Q psy6409 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMIDMGF 896 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-----~~~l~~~~~lViDEaH~l~d~gf 896 (1832)
+..|..+... +-.+..+.+-.. ...++|.|+|.+++...+... .+....+++|||||||+=+
T Consensus 232 ~~af~~~~P~-~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---- 298 (875)
T COG4096 232 YGAFEDFLPF-GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---- 298 (875)
T ss_pred HHHHHHhCCC-ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----
Confidence 9999888543 222222222111 015799999999998887654 3456679999999999733
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc-CCCcEE------------
Q psy6409 897 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATV------------ 963 (1832)
Q Consensus 897 ~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l-~~p~~v------------ 963 (1832)
......|+.++.. -+++++||+...++.-...|+ ..|...
T Consensus 299 ~~~~~~I~dYFdA---------------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfL 351 (875)
T COG4096 299 YSEWSSILDYFDA---------------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFL 351 (875)
T ss_pred HhhhHHHHHHHHH---------------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhcccc
Confidence 3444566666531 123447776544333222333 333222
Q ss_pred ------EEcc----cCCCCcce--------------EEEEEEc----------chhhHHHHHHHHHHcC--C--CCCEEE
Q psy6409 964 ------YIGS----VGKPTERI--------------EQIVYIL----------SEQDKRKKLMEVLNRG--V--KKPVII 1005 (1832)
Q Consensus 964 ------~~~~----~~~~~~~i--------------~q~~~~~----------~~~~k~~~L~~~l~~~--~--~~~vIV 1005 (1832)
.+.. .+...... .+.+... ..+.-...+.+.+... . .+++||
T Consensus 352 vpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIv 431 (875)
T COG4096 352 VPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIV 431 (875)
T ss_pred CCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEE
Confidence 1110 00000000 0000000 0111123344455542 2 458999
Q ss_pred EEcccchHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHh--CCCCcEEEecccccccCCCcCcCEEEEcCCC
Q psy6409 1006 FVNQKKGADVLAKGLEKL-----GYNACTLHGGKGQEQRELALNSLK--GGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~il~~F~--~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p 1078 (1832)
||.+..+|+.+...|... |--+..+.|.-.+. +.. ++.|. +.--+|.|+.+++..|||+|.|.+++.+..-
T Consensus 432 Fa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~-q~~-Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~V 509 (875)
T COG4096 432 FAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA-QAL-IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKV 509 (875)
T ss_pred EeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh-HHH-HHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhh
Confidence 999999999999999765 22355666654433 333 34443 3444688999999999999999999999999
Q ss_pred CCHhHHHHHhcccccC
Q psy6409 1079 KSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1079 ~s~~~yvQr~GRaGR~ 1094 (1832)
.|..-|.|++||+-|.
T Consensus 510 rSktkF~QMvGRGTRl 525 (875)
T COG4096 510 RSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhHHHHHHHhcCcccc
Confidence 9999999999999994
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=175.55 Aligned_cols=188 Identities=41% Similarity=0.671 Sum_probs=153.4
Q ss_pred HcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
..++.+|+++|.++++.++.+ +++++++|||||||.+++.+++..+.. ....+++|++|++.++.|+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~----------~~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR----------GKGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc----------cCCCcEEEEeCCHHHHHHHHH
Confidence 357889999999999999998 999999999999999999999876532 124679999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCC-ceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~-~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
.+..++...........++.........+..+. +|+++|++.+.+.+.........+++||+||||++....+...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 999887665545666666666555555555565 9999999999999888766778899999999998887677777777
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
++..++ ...+++++|||+++.....+..++..+..+....
T Consensus 153 ~~~~~~-------------------------~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 153 LLKLLP-------------------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHhCC-------------------------ccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 776552 2468999999999999999988888766665543
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=195.31 Aligned_cols=342 Identities=19% Similarity=0.220 Sum_probs=226.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--.+.. .-|+-+.||+|||+++.+|++.... .|..|-|++|+--||.|-+.++
T Consensus 79 lGm-~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al------------~G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNAL------------SGKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred hCC-CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 564 788888766555544 4589999999999999999986543 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|++|.+++++.+..+..... .++|+++|..-| .+.|+.+. .....+.++||||+|.++ |..
T Consensus 144 ~~l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 144 RPLYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred HHHhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 999999999999999988776554433 389999998876 34444332 234788999999999854 111
Q ss_pred -------------ChHHHHHHHHhCCCC----------------------------------------CC------CCCC
Q psy6409 1571 -------------FEPDVQKILEYMPVT----------------------------------------NL------KPDT 1591 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~----------------------------------------~~------~~~~ 1591 (1832)
....+..++..+... .. ....
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 111122222222100 00 0000
Q ss_pred chhhhH----HHHHhhh--ccc----------------------------------------------------------
Q psy6409 1592 EDAEDE----NKLLANY--NSK---------------------------------------------------------- 1607 (1832)
Q Consensus 1592 ~~~~~~----~~l~~~~--~~~---------------------------------------------------------- 1607 (1832)
...... ..+.+.. ...
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence 000000 0000000 000
Q ss_pred cCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECc
Q psy6409 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1684 (1832)
Q Consensus 1608 ~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s 1684 (1832)
+.+..+.+||.|......++..-|--+ +...+...|....... ..+.....|..++.+-+.. ..+.||||-+.|
T Consensus 382 r~Y~kLsGMTGTa~te~~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~S 458 (913)
T PRK13103 382 RLYNKLSGMTGTADTEAFEFRQIYGLD---VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTAT 458 (913)
T ss_pred HhcchhccCCCCCHHHHHHHHHHhCCC---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 011233356666655555555544332 2222333443322221 3345566777777766653 367899999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC----------------------
Q psy6409 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1742 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------------------- 1742 (1832)
+...+.|+..|...+++..++++.....+-+.|-+.-+. -.|.|||+.++||.||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 999999999999999998888876554444444433333 35899999999999994
Q ss_pred ---------------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1743 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1743 ---------------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+=-+||-...|.|..-=-|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 224788888899988889999999999999999999998764
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=192.93 Aligned_cols=338 Identities=22% Similarity=0.282 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQN----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g----~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..+++-|..|+..+... .-.++.+.||||||-+|+-.|-..+. .|..||||+|-.+|..|+...
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------------~GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------------QGKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------------cCCEEEEEeccccchHHHHHH
Confidence 46788999999998765 56899999999999999887776653 488999999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHH---HHHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQ---GFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~---~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
|+..+ |.+++.++++.+..+. |.... ..+.|||+|-..+ ...+.++++|||||=|-- .|.
T Consensus 265 f~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~---sYK--- 328 (730)
T COG1198 265 FKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDS---SYK--- 328 (730)
T ss_pred HHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccc---ccc---
Confidence 98864 5778889999886653 33333 3589999996544 346889999999999932 111
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc-ccCCCCcceEEEE
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG-SVGKPTERIEQIV 1654 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~-~~~~~~~~i~q~~ 1654 (1832)
.....-..+.. .+.+........+|+-|||++-.- ...-.-..-..+... ..+.....-.+.+
T Consensus 329 -------------q~~~prYhARd-vA~~Ra~~~~~pvvLgSATPSLES--~~~~~~g~y~~~~L~~R~~~a~~p~v~ii 392 (730)
T COG1198 329 -------------QEDGPRYHARD-VAVLRAKKENAPVVLGSATPSLES--YANAESGKYKLLRLTNRAGRARLPRVEII 392 (730)
T ss_pred -------------CCcCCCcCHHH-HHHHHHHHhCCCEEEecCCCCHHH--HHhhhcCceEEEEccccccccCCCcceEE
Confidence 00000000000 111222335578999999976433 222211111111111 1111101111222
Q ss_pred EEcchhhHH-----HHHHHHHHhC--CCCcEEEEECchhHHHH-------------------------------------
Q psy6409 1655 YILSEQDKR-----KKLMEVLNRG--VKKPVIIFVNQKKGADV------------------------------------- 1690 (1832)
Q Consensus 1655 ~~~~~~~k~-----~~l~~~l~~~--~~~~vIVFv~s~~~a~~------------------------------------- 1690 (1832)
....+.... ..|++.+... .+.++|+|+|.+.-+-.
T Consensus 393 Dmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~ 472 (730)
T COG1198 393 DMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQE 472 (730)
T ss_pred eccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCC
Confidence 222221111 3444444332 45678888888544321
Q ss_pred -----------------------HHHHHHHc--CCcEEEEcCCCCHH--HHHHHHHHhhCCCCcEEEEcccccccCCCCC
Q psy6409 1691 -----------------------LAKGLEKL--GYNACTLHGGKGQE--QRELALNSLKGGSKDILVATDVAGRGIDIKD 1743 (1832)
Q Consensus 1691 -----------------------l~~~L~~~--~~~v~~lHg~ls~~--~R~~il~~F~~g~~~VLVATdvl~~GIDip~ 1743 (1832)
+.+.|... +..+..+.++.+.. .-+..+..|.+|+++|||.|..++.|.|+|+
T Consensus 473 ~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~ 552 (730)
T COG1198 473 PIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPN 552 (730)
T ss_pred CCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCccc
Confidence 22222221 33455555554433 3467899999999999999999999999999
Q ss_pred CCEEEEeCCCC------------CHHHHHHHhcccccCCCccEEEEEeeCCChhHHHH---------HHHHhhcCCCCCC
Q psy6409 1744 VSMVINYDMAK------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD---------LKQMMISSPVSTC 1802 (1832)
Q Consensus 1744 v~~VI~~d~P~------------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~---------l~~~l~~~~~~~~ 1802 (1832)
+.+|...|.-. ....+.|-.|||||++++|.+++-....|-..+.. ..+.|...+.-.+
T Consensus 553 vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~ 632 (730)
T COG1198 553 VTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGL 632 (730)
T ss_pred ceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCC
Confidence 99988655321 35568899999999999999988866655322222 2344444444566
Q ss_pred Chh
Q psy6409 1803 PPE 1805 (1832)
Q Consensus 1803 ~~~ 1805 (1832)
||.
T Consensus 633 PPf 635 (730)
T COG1198 633 PPF 635 (730)
T ss_pred CCh
Confidence 765
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=200.33 Aligned_cols=296 Identities=18% Similarity=0.137 Sum_probs=177.3
Q ss_pred CcHHHHHHHHHHHc----------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 751 PTPIQRQAIPIGLQ----------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 751 pt~iQ~~ai~~il~----------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
|.++|..|+..+.. .+..+++.+||||||++++..+...+. ....+++|||+|+.+|..|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----------~~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----------LLKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----------hcCCCeEEEEECcHHHHHH
Confidence 78889999987642 246999999999999987765543321 1346899999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHcc--ccccCCc-eeEEEecchhhhcCCC
Q psy6409 821 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR--YLVLNQC-TYIVLDEADRMIDMGF 896 (1832)
Q Consensus 821 i~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~--~~~l~~~-~~lViDEaH~l~d~gf 896 (1832)
+.+.|..++... ..+..+...-...+. ....|+|+|.+++...+... ......- .+||+||||+....+
T Consensus 309 ~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~- 381 (667)
T TIGR00348 309 LMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE- 381 (667)
T ss_pred HHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH-
Confidence 999999985321 011112221112222 24789999999997644321 1111111 289999999864322
Q ss_pred hHHHHHHH-HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH-HHh---cCCCcEEEEcccCCC
Q psy6409 897 EPDVQKIL-EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSY---LRRPATVYIGSVGKP 971 (1832)
Q Consensus 897 ~~~i~~Il-~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~-~~~---l~~p~~v~~~~~~~~ 971 (1832)
+...+ ..+| ....++||||.-.....-. ..| ...+... ..-....
T Consensus 382 ---~~~~l~~~~p--------------------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI 431 (667)
T TIGR00348 382 ---LAKNLKKALK--------------------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAI 431 (667)
T ss_pred ---HHHHHHhhCC--------------------------CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHh
Confidence 22222 3332 2468999999732111000 111 1111111 1000000
Q ss_pred Cc----ceEEEEE----Ec--------------------chh-------------------hHHHHHHH-HHHc------
Q psy6409 972 TE----RIEQIVY----IL--------------------SEQ-------------------DKRKKLME-VLNR------ 997 (1832)
Q Consensus 972 ~~----~i~q~~~----~~--------------------~~~-------------------~k~~~L~~-~l~~------ 997 (1832)
.. .+..... .+ .+. .....+.. ++..
T Consensus 432 ~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~ 511 (667)
T TIGR00348 432 RDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKE 511 (667)
T ss_pred hcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhh
Confidence 00 0000000 00 000 00011111 1111
Q ss_pred CCCCCEEEEEcccchHHHHHHHHHHc-----CCcEEEEcCCCCHH---------------------HHHHHHHHHhC-CC
Q psy6409 998 GVKKPVIIFVNQKKGADVLAKGLEKL-----GYNACTLHGGKGQE---------------------QRELALNSLKG-GS 1050 (1832)
Q Consensus 998 ~~~~~vIVFv~s~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~---------------------~R~~il~~F~~-G~ 1050 (1832)
....+++|||.++.+|..+++.|... +..+.++++..... ....+++.|++ +.
T Consensus 512 ~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~ 591 (667)
T TIGR00348 512 LFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEEN 591 (667)
T ss_pred cccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCC
Confidence 12478999999999999999988665 24455666654332 22468889976 78
Q ss_pred CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1051 ~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
++|||.++.+.+|+|.|.+++++...+-++ ..++|.+||+-|.
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 899999999999999999998887776555 4689999999993
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=183.59 Aligned_cols=341 Identities=22% Similarity=0.272 Sum_probs=229.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++..|+ |..+.||-|||+++.||++... -.|..|-|+...--||.-=+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnA------------L~GkgVhVVTvNdYLA~RDae~m 139 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNA------------LTGKGVIVSTVNEYLAERDAEEM 139 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHH------------hcCCceEEEecchhhhhhhHHHH
Confidence 465 78999998887777774 8999999999999999997432 23666888888899998888888
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~gf~ 897 (1832)
..+...+|+.|+++..+++..+..... .|+|+++|..-|- |.|.... .....+.|.||||||.++ |...-
T Consensus 140 g~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 140 GKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 888888999999999887766544333 6999999987663 4443322 245678899999999754 21111
Q ss_pred ---------------HHHHHHHHhCCC----------------------------CCCC---------------------
Q psy6409 898 ---------------PDVQKILEYMPV----------------------------TNLK--------------------- 913 (1832)
Q Consensus 898 ---------------~~i~~Il~~l~~----------------------------~~~~--------------------- 913 (1832)
..+..++..+.. .++.
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 111112221110 0000
Q ss_pred ------------------------CCCchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHHH
Q psy6409 914 ------------------------PDTEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 914 ------------------------~~~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~~ 951 (1832)
+.....+.+...+..-+. .+-+..+.++|+|.......
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~E 377 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQE 377 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHH
Confidence 000000001111100000 12234677888887666666
Q ss_pred HHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEE
Q psy6409 952 LARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNAC 1028 (1832)
Q Consensus 952 ~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~ 1028 (1832)
|...|--+ +..-+...|......- ..+.....|...+.+-+.. ..+.|+||.|.|.+.++.++..|...|++..
T Consensus 378 f~~iY~l~---Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~ 454 (925)
T PRK12903 378 FIDIYNMR---VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHT 454 (925)
T ss_pred HHHHhCCC---EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCce
Confidence 66555332 2222333333333221 3445666777777665543 3677999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhCC-CCcEEEecccccccCCCcCcC--------EEEEcCCCCCHhHHHHHhcccccCCCCcE
Q psy6409 1029 TLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDVS--------MVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099 (1832)
Q Consensus 1029 ~lhg~~~~~~R~~il~~F~~G-~~~VLVaTdv~~rGlDip~v~--------~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ 1099 (1832)
++++.-. +++.-+-. ..| .-.|.|||++|+||.||.--. |||....|.|..-=.|-.|||||-|.+|.
T Consensus 455 vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGs 531 (925)
T PRK12903 455 VLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGE 531 (925)
T ss_pred eecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCc
Confidence 9998633 34332222 344 346999999999999996322 99999999998888899999999999999
Q ss_pred EEEEecCCCc
Q psy6409 1100 AVSFCTKDDS 1109 (1832)
Q Consensus 1100 ai~~~~~~d~ 1109 (1832)
+-.|++-+|.
T Consensus 532 s~f~lSLeD~ 541 (925)
T PRK12903 532 SRFFISLDDQ 541 (925)
T ss_pred ceEEEecchH
Confidence 9999998873
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=180.35 Aligned_cols=306 Identities=19% Similarity=0.250 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-Hhc
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFG 1504 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~ 1504 (1832)
-...+.+.+..+-.++-+++++.||||||.- +|-+ +... .-.....+-+..|.|.-|.-+++... +++
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Qy--L~ed-------GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQY--LYED-------GYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHH--HHhc-------ccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 3445566666666777799999999999984 3332 2221 11234468888999998888777665 454
Q ss_pred CCCCCeEEEE--ECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1505 TPLGIRTVLV--VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1505 ~~~g~~v~~l--~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
..+|..|..- ..+.+. ...-|-+.|-|.|+.-.... -.|.++++||+||||.=.- --+.+.
T Consensus 426 ~~lG~~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERsl--NtDilf------ 488 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSL--NTDILF------ 488 (1042)
T ss_pred CccccccceEEEeeecCC--------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhccc--chHHHH------
Confidence 4555433221 122221 13567789999887543321 2477899999999993110 011111
Q ss_pred CCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhh-
Q psy6409 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD- 1661 (1832)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~- 1661 (1832)
.++......+....+|..||||.. +.+...|.+-|. +.+.....|.. -.+...+..+
T Consensus 489 ----------------Gllk~~larRrdlKliVtSATm~a--~kf~nfFgn~p~-f~IpGRTyPV~---~~~~k~p~eDY 546 (1042)
T KOG0924|consen 489 ----------------GLLKKVLARRRDLKLIVTSATMDA--QKFSNFFGNCPQ-FTIPGRTYPVE---IMYTKTPVEDY 546 (1042)
T ss_pred ----------------HHHHHHHHhhccceEEEeeccccH--HHHHHHhCCCce-eeecCCccceE---EEeccCchHHH
Confidence 122222223356789999999954 455554544444 44443333332 1121111111
Q ss_pred HHHHHHHHHH---hCCCCcEEEEECchhHHHHHHHHHH----Hc------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1662 KRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLE----KL------GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1662 k~~~l~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~----~~------~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
-..++...+. ..+.+-+|||.......+..+..+. ++ ++.|..+++.|++.-+..+++....|.-++
T Consensus 547 Veaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~ 626 (1042)
T KOG0924|consen 547 VEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKC 626 (1042)
T ss_pred HHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeE
Confidence 1122222222 2356789999988766665555443 32 678899999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+|||++++..+.||++.+||..++ |-|-++--||.|||||.| +|.|+-+++.+
T Consensus 627 IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 627 IVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999999999999999999997443 668888899999999976 89999999975
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-14 Score=179.87 Aligned_cols=340 Identities=23% Similarity=0.287 Sum_probs=229.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-..-.+..|+ |.-+.||-|||+++.+|++...+ .|..|-|+...--||.-=..++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL------------~GkgVhVVTvNdYLA~RDae~m 139 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL------------TGKGVIVSTVNEYLAERDAEEM 139 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh------------cCCceEEEecchhhhhhhHHHH
Confidence 576 78899988776666664 89999999999999999974332 3667888888999999888899
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|+.|.++..+.++...... -.|||+.+|..-| .+.|+.+. .....+.+.||||+|.++ |..
T Consensus 140 g~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 140 GKVFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHHHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 99888999999999888776654333 2589999998765 35555432 235678999999999743 110
Q ss_pred -------------ChHHHHHHHHhCCC----------------------------CCCCCCCch----------------
Q psy6409 1571 -------------FEPDVQKILEYMPV----------------------------TNLKPDTED---------------- 1593 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~----------------------------~~~~~~~~~---------------- 1593 (1832)
+...+..++..+.. .+ ..+...
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~n-Ly~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKN-LYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCc-ccChhhHHHHHHHHHHHHHHHH
Confidence 11111222221110 00 000000
Q ss_pred ------------------------------hhhHHHHHhh---h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1594 ------------------------------AEDENKLLAN---Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1594 ------------------------------~~~~~~l~~~---~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
....-+.+.. + +.-+.+..+.+||.|....-.
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 0000000000 0 000123356689999877666
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+ +...+...|....... ..+.....|..+++.-+.. ..+.||||.|.|+..++.|+..|...|++.
T Consensus 377 Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 377 EFIDIYNMR---VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred HHHHHhCCC---EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 776655433 2223334444333322 3344566777777765543 367899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCC-CCcEEEEcccccccCCCCCC--------CEEEEeCCCCCHHHHHHHhcccccCCCcc
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDV--------SMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g-~~~VLVATdvl~~GIDip~v--------~~VI~~d~P~s~~~yiQRiGRaGR~g~~G 1773 (1832)
.++++.-...+-..|- ..| .-.|.|||+.++||.||.-- -+||....|.|..-=-|-.|||||-|.+|
T Consensus 454 ~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 9999864433333332 344 34689999999999999622 28999999999888889999999999999
Q ss_pred EEEEEeeCCCh
Q psy6409 1774 LAVSFCTKDDS 1784 (1832)
Q Consensus 1774 ~ai~~~~~~d~ 1784 (1832)
.+..|++-.|.
T Consensus 531 ss~f~lSLeD~ 541 (925)
T PRK12903 531 ESRFFISLDDQ 541 (925)
T ss_pred cceEEEecchH
Confidence 99999987764
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-15 Score=176.26 Aligned_cols=307 Identities=18% Similarity=0.252 Sum_probs=205.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH-HHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET-NKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~-~~~ 1503 (1832)
.-+++-.+.+.++-...-+||.+.||||||. .+|-+. .. ..-...|.++-+..|.|--|..++... ..+
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL--~E------aGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYL--YE------AGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHH--Hh------cccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 4466677788888888889999999999997 455432 21 112335666889999998888866555 445
Q ss_pred cCCCCCeEEEE--ECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh-hhcCCChHHHHHHHH
Q psy6409 1504 GTPLGIRTVLV--VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1504 ~~~~g~~v~~l--~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~-ll~~gf~~~l~~Il~ 1580 (1832)
+..+|..|..- +.+.. ....-|=+.|.|.|+.-+... ..|..+++|||||||. -+. -+.+-.++
T Consensus 335 gvkLG~eVGYsIRFEdcT--------SekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~---TDILfgLv- 401 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCT--------SEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLH---TDILFGLV- 401 (902)
T ss_pred CcccccccceEEEecccc--------CcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhh---hhHHHHHH-
Confidence 55554333211 11111 123557789999988766543 3688899999999993 111 11111111
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 1660 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~ 1660 (1832)
..+...++...+++.|||+... .+. .|+.+...+.+...-.|. .-++...++.
T Consensus 402 ---------------------KDIar~RpdLKllIsSAT~DAe--kFS-~fFDdapIF~iPGRRyPV---di~Yt~~PEA 454 (902)
T KOG0923|consen 402 ---------------------KDIARFRPDLKLLISSATMDAE--KFS-AFFDDAPIFRIPGRRYPV---DIFYTKAPEA 454 (902)
T ss_pred ---------------------HHHHhhCCcceEEeeccccCHH--HHH-HhccCCcEEeccCcccce---eeecccCCch
Confidence 1112223456799999999543 343 455554444443332222 2334444444
Q ss_pred hHHHHH-HHHHH---hCCCCcEEEEECchhHHHHHHHHHHH----cC-----CcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1661 DKRKKL-MEVLN---RGVKKPVIIFVNQKKGADVLAKGLEK----LG-----YNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1661 ~k~~~l-~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~----~~-----~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
+-+.+. ..++. ..+.+-+|||..-....+.....|.. +| +-+..+|+.++++.+..|++---.|.-+
T Consensus 455 dYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 455 DYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred hHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 433332 22332 23567899999988777666666543 23 4577899999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|++||++++..|.|++|..||.-++ |-|-++-.||+|||||.| +|+|+-+++.-
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 9999999999999999999997443 557888999999999986 89999999953
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=176.13 Aligned_cols=346 Identities=14% Similarity=0.077 Sum_probs=234.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
+-+.+..+.-+....+|.++|..+-+|+++++.-.|.|||.+++.+.....+.. ......+++.||++|+
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~----------~~~s~~~~~~~~~~~~ 344 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL----------CHATNSLLPSEMVEHL 344 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc----------CcccceecchhHHHHh
Confidence 344555566677789999999999999999999999999999999888765432 3345578999999999
Q ss_pred HHHHHHHHHhcC---CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc----ccCCceeEEEecchhh
Q psy6409 819 QQIEEETNKFGT---PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----VLNQCTYIVLDEADRM 891 (1832)
Q Consensus 819 ~Qi~~~~~~~~~---~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~----~l~~~~~lViDEaH~l 891 (1832)
+...+.+.-... .+.--++..+.|.+..+...-.+.+..++++.|.+....+.-+.+ .+-...+++.||+|..
T Consensus 345 ~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 345 RNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred hccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 876544432211 112234555666666666666677899999999998766654433 2334578999999944
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCC
Q psy6409 892 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP 971 (1832)
Q Consensus 892 ~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~ 971 (1832)
. .-|+..+...++++. .+..-+. .....|++-.|||+...++.....+--+.......+ ..
T Consensus 425 ~-~~~~~~~~~~~R~L~---------------~L~~~F~-~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D--GS 485 (1034)
T KOG4150|consen 425 L-FPTKALAQDQLRALS---------------DLIKGFE-ASINMGVYDGDTPYKDRTRLRSELANLSELELVTID--GS 485 (1034)
T ss_pred e-cchhhHHHHHHHHHH---------------HHHHHHH-hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec--CC
Confidence 3 335555444444331 1111111 123578999999998777655444433333222211 11
Q ss_pred CcceEEEEEEcc---------hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc----C----CcEEEEcC
Q psy6409 972 TERIEQIVYILS---------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL----G----YNACTLHG 1032 (1832)
Q Consensus 972 ~~~i~q~~~~~~---------~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~----g----~~v~~lhg 1032 (1832)
+..-.+.+.+.+ ...++.....++.+ ..+-++|-||.+++.|+.+....++. + -.+..+.|
T Consensus 486 Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRG 565 (1034)
T KOG4150|consen 486 PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRG 565 (1034)
T ss_pred CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC
Confidence 222233343321 11222222222222 24568999999999998876655432 2 13556889
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC--Cch
Q psy6409 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD--DSH 1110 (1832)
Q Consensus 1033 ~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~--d~~ 1110 (1832)
|-+.++|.++....-.|+..-+|||++++-||||.+.+.|++.++|.|+..+.|.+|||||-.++..++.+.... |..
T Consensus 566 GY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~ 645 (1034)
T KOG4150|consen 566 GYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQY 645 (1034)
T ss_pred ccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999998887666555443 444
Q ss_pred HHH
Q psy6409 1111 LFY 1113 (1832)
Q Consensus 1111 ~~~ 1113 (1832)
++.
T Consensus 646 Y~~ 648 (1034)
T KOG4150|consen 646 YMS 648 (1034)
T ss_pred hhc
Confidence 433
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=185.04 Aligned_cols=335 Identities=19% Similarity=0.250 Sum_probs=194.2
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
-|| +++|-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 466 79999999665544 567899999999999999999987532 256799999999999998
Q ss_pred -HHHHHHhcCCCCCeEEEEECCcchHH-----H------------------------------------------HHHh-
Q psy6409 1497 -EEETNKFGTPLGIRTVLVVGGLSREE-----Q------------------------------------------GFRL- 1527 (1832)
Q Consensus 1497 -~~~~~~~~~~~g~~v~~l~gg~~~~~-----~------------------------------------------~~~l- 1527 (1832)
.+.+..+...+++++..+.|+...-. + +..+
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 57777777777887777776543100 0 0000
Q ss_pred -----------------------hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC-----C----hHHH
Q psy6409 1528 -----------------------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-----F----EPDV 1575 (1832)
Q Consensus 1528 -----------------------~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g-----f----~~~l 1575 (1832)
...++|||+.-.-|...+.... .+...++|||||||++.+.. . ....
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~ 466 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFL 466 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHH
Confidence 1136788888776666553332 25678999999999875421 0 0000
Q ss_pred HHH---H----------------------------------------------------------HhCCCCC---CCCC-
Q psy6409 1576 QKI---L----------------------------------------------------------EYMPVTN---LKPD- 1590 (1832)
Q Consensus 1576 ~~I---l----------------------------------------------------------~~l~~~~---~~~~- 1590 (1832)
..+ + ..+.... +...
T Consensus 467 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~ 546 (820)
T PRK07246 467 QTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESE 546 (820)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 000 0 0000000 0000
Q ss_pred -----C-----chhhhHHHHHhhhccccCcceEEEEEccCC--hHHHHHHHHh-cCCCcEEEEcccCCCCcceEEEEEE-
Q psy6409 1591 -----T-----EDAEDENKLLANYNSKKKYRQTVMFTATMP--PAVERLARSY-LRRPATVYIGSVGKPTERIEQIVYI- 1656 (1832)
Q Consensus 1591 -----~-----~~~~~~~~l~~~~~~~~~~~q~v~~SATl~--~~~~~~~~~~-l~~p~~v~i~~~~~~~~~i~q~~~~- 1656 (1832)
. ........+ ..+ ......+|++|||++ +... +...+ +.......+. ..... .+.+..
T Consensus 547 ~~~~~~~~~l~~~pl~v~~~-~~~--~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~ 618 (820)
T PRK07246 547 KQSEKRVTYLNSASKAFTHF-SQL--LPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQ-DQLVVVD 618 (820)
T ss_pred CCCCcceeEEEeeeCcHHHH-HHH--HhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHH-ccEEEeC
Confidence 0 000000000 000 012246889999995 2222 32222 1111111111 11110 111111
Q ss_pred --cc------hhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1657 --LS------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1657 --~~------~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
.+ ...-...+.+.+.. ...++++|+++|.+..+.++..|....+.+ ...|.-. .+..+++.|++++-
T Consensus 619 ~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 619 QDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 11 11222233332211 356899999999999999999997665555 4444222 25668999999988
Q ss_pred cEEEEcccccccCCCC--CCCEEEEeCCCC------------------------------CHHHHHHHhcccccCCC-cc
Q psy6409 1727 DILVATDVAGRGIDIK--DVSMVINYDMAK------------------------------SIEDYTHRIGRTGRAGK-EG 1773 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip--~v~~VI~~d~P~------------------------------s~~~yiQRiGRaGR~g~-~G 1773 (1832)
.||++|+.+.+|||+| +...||...+|- -+..+.|-+||.=|... .|
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 9999999999999997 355566655541 23456799999999654 56
Q ss_pred EEEEEeeCC
Q psy6409 1774 LAVSFCTKD 1782 (1832)
Q Consensus 1774 ~ai~~~~~~ 1782 (1832)
. ++++++.
T Consensus 776 v-v~ilD~R 783 (820)
T PRK07246 776 A-VLILDRR 783 (820)
T ss_pred E-EEEECCc
Confidence 5 4444443
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=184.59 Aligned_cols=312 Identities=21% Similarity=0.280 Sum_probs=210.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH-hc
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FG 1504 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~-~~ 1504 (1832)
....+.+.+.++.+...++|.+.||+|||.-.---+|..... .+....+++-.|.|-=|.-++++... .+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---------~~~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---------SGAACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---------cCCCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 456677888888888999999999999998543334433211 12456699999988777766665543 35
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh-hcCCCh-HHHHHHHHhC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-IDMGFE-PDVQKILEYM 1582 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l-l~~gf~-~~l~~Il~~l 1582 (1832)
...|-.|+.-++..+.. .....+++||.|.|+..+.. ...+..+..||+||+|.= ++..|- -.+..++
T Consensus 245 ~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL--- 314 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLL--- 314 (924)
T ss_pred cccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHh---
Confidence 55564444433332221 12467999999999999987 556889999999999931 111121 1111111
Q ss_pred CCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcce------------
Q psy6409 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI------------ 1650 (1832)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i------------ 1650 (1832)
...+..++|+||||+.. + ....|+.....+.+.....+....
T Consensus 315 -----------------------~~~p~LkvILMSAT~da--e-~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~ 368 (924)
T KOG0920|consen 315 -----------------------PRNPDLKVILMSATLDA--E-LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYV 368 (924)
T ss_pred -----------------------hhCCCceEEEeeeecch--H-HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhccc
Confidence 12256789999999973 2 334555555555544322221100
Q ss_pred ----EEE------------EEEcchhhHHHHHHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc-------CCcEE
Q psy6409 1651 ----EQI------------VYILSEQDKRKKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL-------GYNAC 1703 (1832)
Q Consensus 1651 ----~q~------------~~~~~~~~k~~~l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~-------~~~v~ 1703 (1832)
.+. ............+.+++.. ...+.+|||.+.-.....++..|... .+-+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~il 448 (924)
T KOG0920|consen 369 SEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAIL 448 (924)
T ss_pred ccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEE
Confidence 000 0000111223333333332 34678999999999999999998642 25678
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE--------eCCCC----------CHHHHHHHhcc
Q psy6409 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN--------YDMAK----------SIEDYTHRIGR 1765 (1832)
Q Consensus 1704 ~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~--------~d~P~----------s~~~yiQRiGR 1765 (1832)
.+|+.|+..+++.+...--.|.-+|++||++++..|-|++|-.||. ||.-. |-++-.||.||
T Consensus 449 plHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 449 PLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred eccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 8999999999999999999999999999999999999999999997 44432 45567899999
Q ss_pred cccCCCccEEEEEeeCCC
Q psy6409 1766 TGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1766 aGR~g~~G~ai~~~~~~d 1783 (1832)
|||. ..|.|+-+++...
T Consensus 529 AGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 529 AGRV-RPGICYHLYTRSR 545 (924)
T ss_pred ccCc-cCCeeEEeechhh
Confidence 9997 5899999999764
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-14 Score=186.67 Aligned_cols=334 Identities=18% Similarity=0.225 Sum_probs=194.1
Q ss_pred cCCCCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
.|| ++++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 466 68999998554443 467899999999999999999987532 256899999999999999
Q ss_pred -HHHHHHhcCCCCCeEEEEEcCCchH-----HH------------------------------------------HHHH-
Q psy6409 822 -EEETNKFGTPLGIRTVLVVGGLSRE-----EQ------------------------------------------GFRL- 852 (1832)
Q Consensus 822 -~~~~~~~~~~~~i~v~~~~Gg~~~~-----~~------------------------------------------~~~l- 852 (1832)
.+.+..+...+++++..+.|+.+.- ++ +..+
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 4677777777888888887765410 00 0000
Q ss_pred -----------------------hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC--ChHH---HHHHH
Q psy6409 853 -----------------------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPD---VQKIL 904 (1832)
Q Consensus 853 -----------------------~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g--f~~~---i~~Il 904 (1832)
...++|||+.-..|...+.... .+..+++|||||||++.+.. +... +..++
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~ 466 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFL 466 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHH
Confidence 0136788888887776554433 36778999999999976421 0000 00000
Q ss_pred HhC------------------------------C-----------------------------------CCC------CC
Q psy6409 905 EYM------------------------------P-----------------------------------VTN------LK 913 (1832)
Q Consensus 905 ~~l------------------------------~-----------------------------------~~~------~~ 913 (1832)
..+ . ... ..
T Consensus 467 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~ 546 (820)
T PRK07246 467 QTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESE 546 (820)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 000 0 000 00
Q ss_pred C----CC--ch--hHHHHHHHHhhccccccceEEEEEecCC--hHHHHHHHHhc-CCCcEEEEcccCCCCcceEEEEEE-
Q psy6409 914 P----DT--ED--AEDENKLLANYNSKKKYRQTVMFTATMP--PAVERLARSYL-RRPATVYIGSVGKPTERIEQIVYI- 981 (1832)
Q Consensus 914 ~----~~--~~--~~~~~~ll~~~~~~~~~~q~v~~SATl~--~~v~~~~~~~l-~~p~~v~~~~~~~~~~~i~q~~~~- 981 (1832)
. .. .. ...... +..+ ......+|++||||+ +.. .+...+. .......+. .. .. -.+.++.
T Consensus 547 ~~~~~~~~~l~~~pl~v~~-~~~~--~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~--~~-~~-~~~~~~i~ 618 (820)
T PRK07246 547 KQSEKRVTYLNSASKAFTH-FSQL--LPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE--KD-KK-QDQLVVVD 618 (820)
T ss_pred CCCCcceeEEEeeeCcHHH-HHHH--HhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC--CC-hH-HccEEEeC
Confidence 0 00 00 000000 0000 012247899999995 222 2433222 111111111 00 00 0111111
Q ss_pred --cc------hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 982 --LS------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 982 --~~------~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
+. ...-...+.+.+.. ..+++++||++|.+..+.+++.|....+.+ ...|.-. .+..+++.|+++..
T Consensus 619 ~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 619 QDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 01 11222223222211 356789999999999999999997665555 4444222 25668999999988
Q ss_pred cEEEecccccccCCCcC--cCEEEEcCCCC------------------------------CHhHHHHHhcccccCCCC-c
Q psy6409 1052 DILVATDVAGRGIDIKD--VSMVINYDMAK------------------------------SIEDYTHRIGRTGRAGKE-G 1098 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~--v~~VI~~d~p~------------------------------s~~~yvQr~GRaGR~g~~-G 1098 (1832)
.||++|+.+.+|||+|+ ...||...+|. -+..+.|-+||.=|...+ |
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999984 45556555542 133467888998887654 5
Q ss_pred EEEEEecC
Q psy6409 1099 LAVSFCTK 1106 (1832)
Q Consensus 1099 ~ai~~~~~ 1106 (1832)
. +.++..
T Consensus 776 v-v~ilD~ 782 (820)
T PRK07246 776 A-VLILDR 782 (820)
T ss_pred E-EEEECC
Confidence 4 444443
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=154.66 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccc
Q psy6409 1660 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~ 1737 (1832)
..|...+..++... ...++||||++...++.++..|...+.++..+||+++..+|..+++.|.+|...||++|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36777888888765 3789999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
|+|+|.+++||.++.|.+...|+|++||+||.|+.|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998888764
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=173.26 Aligned_cols=313 Identities=17% Similarity=0.230 Sum_probs=206.6
Q ss_pred CCCCcHHHHHHHHHHHcC---CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~g---rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
-..++|+|..++..+..+ |.-||+.|.|+|||++-+-++. .-...+||||.+-.-++|+...
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---------------tikK~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---------------TIKKSCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---------------eecccEEEEecCccCHHHHHHH
Confidence 367899999999999863 6789999999999997544332 2356799999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--------ccccCCceeEEEecchhhhcCCC
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--------YLVLNQCTYIVLDEADRMIDMGF 896 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--------~~~l~~~~~lViDEaH~l~d~gf 896 (1832)
|..++.--+-.++..+.+... ....++.|+|+|..++..--.+. .+.-..|.++|+||+|.+...-|
T Consensus 365 fk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 999977666667777766542 23347899999987764221111 12345789999999998877667
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH-HhcCCCcEE------------
Q psy6409 897 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATV------------ 963 (1832)
Q Consensus 897 ~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~-~~l~~p~~v------------ 963 (1832)
+..+.-+-+++. ++++||+-..-+++.. .|+-.|...
T Consensus 440 RRVlsiv~aHcK------------------------------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGh 489 (776)
T KOG1123|consen 440 RRVLSIVQAHCK------------------------------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGH 489 (776)
T ss_pred HHHHHHHHHHhh------------------------------ccceeEEeeccccccccceeecchhhhccHHHHHhCCc
Confidence 777766665553 4566665221111110 011111100
Q ss_pred --EEcccC-------------CCCcceEEEEEEcchhhHHHH---HHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCC
Q psy6409 964 --YIGSVG-------------KPTERIEQIVYILSEQDKRKK---LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025 (1832)
Q Consensus 964 --~~~~~~-------------~~~~~i~q~~~~~~~~~k~~~---L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~ 1025 (1832)
.+.... .....-.....++....|+.. |+..+.. .+.++|||..+.-.....|-.|
T Consensus 490 IA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl----- 563 (776)
T KOG1123|consen 490 IAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL----- 563 (776)
T ss_pred eeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc-----
Confidence 000000 000000111222233344443 3333332 5678999988865544444333
Q ss_pred cEEEEcCCCCHHHHHHHHHHHh-CCCCcEEEecccccccCCCcCcCEEEEcCCC-CCHhHHHHHhcccccCCC------C
Q psy6409 1026 NACTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGK------E 1097 (1832)
Q Consensus 1026 ~v~~lhg~~~~~~R~~il~~F~-~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p-~s~~~yvQr~GRaGR~g~------~ 1097 (1832)
+--.++|..+|.+|..|++.|+ +..++-++-.-|+...||+|..+++|+...- .|..+=.||.||..|+.+ .
T Consensus 564 ~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fn 643 (776)
T KOG1123|consen 564 GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFN 643 (776)
T ss_pred CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccc
Confidence 2347899999999999999998 4577888889999999999999999965432 377888999999999743 3
Q ss_pred cEEEEEecCCCchHHHHHH
Q psy6409 1098 GLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1098 G~ai~~~~~~d~~~~~~l~ 1116 (1832)
...+++++.+...++++-+
T Consensus 644 afFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 644 AFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred eeeeeeeecchHHHHhhhh
Confidence 5677888888766666544
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=171.52 Aligned_cols=314 Identities=16% Similarity=0.201 Sum_probs=212.0
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQ-N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~-g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
..++|||..++..++- | +.-||+.|+|+|||++-+-++. .-...+||||.+---+.|+...+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---------------tikK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---------------TIKKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---------------eecccEEEEecCccCHHHHHHHH
Confidence 4789999999999883 3 6789999999999998654443 12567999999988899999888
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc--------cccccCCceeEEEccchhhhcCCCh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--------RYLVLNQCTYIVLDEADRMIDMGFE 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~--------~~~~l~~v~llViDEaH~ll~~gf~ 1572 (1832)
..+..--.-.++..+++.... ...++.|+|+|...+..--.+ ..+.-..++++|+||+|.+...-|+
T Consensus 366 k~wsti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFR 440 (776)
T KOG1123|consen 366 KQWSTIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFR 440 (776)
T ss_pred HhhcccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHH
Confidence 888654455566666654421 334788999997655322111 1123457899999999988777777
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH-HhcCCCcEEEEcccC-------
Q psy6409 1573 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATVYIGSVG------- 1644 (1832)
Q Consensus 1573 ~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~-~~l~~p~~v~i~~~~------- 1644 (1832)
..+.-+-.++. +++|||+-...+.+.. .||-.|..+..+=.+
T Consensus 441 RVlsiv~aHcK------------------------------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhI 490 (776)
T KOG1123|consen 441 RVLSIVQAHCK------------------------------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHI 490 (776)
T ss_pred HHHHHHHHHhh------------------------------ccceeEEeeccccccccceeecchhhhccHHHHHhCCce
Confidence 77766655553 6777776433222211 111112111000000
Q ss_pred --------------------CCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1645 --------------------KPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1645 --------------------~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
.....-......++...|.....-+++.+ .+.++|||..+.-.....|-.|. -
T Consensus 491 A~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----K 565 (776)
T KOG1123|consen 491 AKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----K 565 (776)
T ss_pred eEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----C
Confidence 00000011222333444544444444433 57799999999877777665553 3
Q ss_pred EEEcCCCCHHHHHHHHHHhh-CCCCcEEEEcccccccCCCCCCCEEEEeCCC-CCHHHHHHHhcccccCCC------ccE
Q psy6409 1703 CTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGK------EGL 1774 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~-~g~~~VLVATdvl~~GIDip~v~~VI~~d~P-~s~~~yiQRiGRaGR~g~------~G~ 1774 (1832)
-++.|..++.+|..|++.|+ +..++-++-+.|....||+|+.+++|+..-- .|-.+=.||.||..|+.+ ...
T Consensus 566 pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnaf 645 (776)
T KOG1123|consen 566 PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAF 645 (776)
T ss_pred ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCcccccee
Confidence 46899999999999999998 5678999999999999999999999987653 477888999999999632 356
Q ss_pred EEEEeeCCChhHHHHHHH
Q psy6409 1775 AVSFCTKDDSHLFYDLKQ 1792 (1832)
Q Consensus 1775 ai~~~~~~d~~~~~~l~~ 1792 (1832)
.+++++.+..++++.-+.
T Consensus 646 FYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 646 FYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred eeeeeecchHHHHhhhhh
Confidence 778888887788776654
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=177.37 Aligned_cols=299 Identities=20% Similarity=0.233 Sum_probs=189.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|+ .|+++|.-..-++..| -|+.+.||.|||+++.+|++... -.|..|-|++++..||.+-++.+
T Consensus 73 lG~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~a------------L~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNA------------LTGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHH------------hcCCceEEEeCCHHHHHHHHHHH
Confidence 566 4888888776555444 69999999999999999996432 13777999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~gf~ 897 (1832)
..+...+|+.|+++.++++..+.... -.++|+++|..-+- |.|.... .....+.+.||||||.++ |...-
T Consensus 138 ~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 138 GQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred HHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 99999999999999998887654433 35899999987553 3443222 245668899999999754 21111
Q ss_pred ---------------HHHHHHHHhCCCC-----------------------------CCC--------------------
Q psy6409 898 ---------------PDVQKILEYMPVT-----------------------------NLK-------------------- 913 (1832)
Q Consensus 898 ---------------~~i~~Il~~l~~~-----------------------------~~~-------------------- 913 (1832)
..+..++..+... ++.
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 1111111111100 000
Q ss_pred ------------------------CCCchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHHH
Q psy6409 914 ------------------------PDTEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 914 ------------------------~~~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~~ 951 (1832)
+.....+.+...+..-+. .+.+..+.++|.|.......
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E 375 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE 375 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH
Confidence 000000001111100000 12244678889998765555
Q ss_pred HHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEE
Q psy6409 952 LARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNAC 1028 (1832)
Q Consensus 952 ~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~ 1028 (1832)
|...|--+ +..-+...|......- ..+.....|...+.+-+.. ..+.||||-|.|.+..+.++..|...|++..
T Consensus 376 f~~iY~l~---vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 376 FEKIYNLE---VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred HHHHhCCC---EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 65555332 2222333333333321 3344556666666554332 3677999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 1029 TLHGGKG--QEQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 1029 ~lhg~~~--~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
++++.-. ..+-+.|-+.-+. -.|.|||++|+||.||
T Consensus 453 vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 453 LLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred eeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 9999642 2333333332233 3589999999999998
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=151.92 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccc
Q psy6409 985 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062 (1832)
Q Consensus 985 ~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~r 1062 (1832)
..|...+.+++... .+.++||||++...++.+++.|...+.++..+||+++..+|..+++.|.+|...||+||.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36777888887765 3779999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1063 GlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
|+|+|.+++||.+++|.+...|+|++||+||.|..|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999988887754
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-15 Score=139.49 Aligned_cols=78 Identities=45% Similarity=0.701 Sum_probs=75.7
Q ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCC
Q psy6409 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095 (1832)
Q Consensus 1018 ~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g 1095 (1832)
++|+..++.+..+||++++.+|..+++.|.+|...|||||+++++|||+|++++||+|++|.+...|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=169.56 Aligned_cols=314 Identities=21% Similarity=0.262 Sum_probs=196.7
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCCeE
Q psy6409 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGIRT 1511 (1832)
Q Consensus 1433 ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~~v 1511 (1832)
.+.+|..+--+|||+.||||||. .+|-+.|=.- . . ......+..+=|..|.|--|.-+++... .++. +|..|
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAG--f-~-s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eV 336 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTT--QVPQFLYEAG--F-A-SEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEV 336 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccc--cchHHHHHcc--c-C-CccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccce
Confidence 34444455568999999999997 4555433111 0 0 0111234467788898876666554443 3333 44444
Q ss_pred EE--EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 1512 VL--VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589 (1832)
Q Consensus 1512 ~~--l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~ 1589 (1832)
.. -+.|.- .....|.++|.|.|+.-+.+. +.|..++.||+||||.=. -+.+.+--+++++-.
T Consensus 337 sYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~----- 400 (1172)
T KOG0926|consen 337 SYQIRFDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS--VNTDILIGMLSRIVP----- 400 (1172)
T ss_pred eEEEEecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc--chHHHHHHHHHHHHH-----
Confidence 32 222221 224679999999998888764 458899999999999411 123444444544421
Q ss_pred CCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH--HHhc-CCCcEEEEcccCCCCcceEEEEEE-cch---hhH
Q psy6409 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA--RSYL-RRPATVYIGSVGKPTERIEQIVYI-LSE---QDK 1662 (1832)
Q Consensus 1590 ~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~--~~~l-~~p~~v~i~~~~~~~~~i~q~~~~-~~~---~~k 1662 (1832)
...-+..-.....+..+|+||||+-- .++. +..+ ..|..+.+.....|. .-++.- ... .+.
T Consensus 401 -------LR~k~~ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikVdARQfPV---sIHF~krT~~DYi~eA 468 (1172)
T KOG0926|consen 401 -------LRQKYYKEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKVDARQFPV---SIHFNKRTPDDYIAEA 468 (1172)
T ss_pred -------HHHHHhhhhcccCceeEEEEeeeEEe--cccccCceecCCCCceeeeecccCce---EEEeccCCCchHHHHH
Confidence 11111111234457789999999842 2332 1122 222333333222221 111111 111 233
Q ss_pred HHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--------------------------------------------
Q psy6409 1663 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-------------------------------------------- 1698 (1832)
Q Consensus 1663 ~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~-------------------------------------------- 1698 (1832)
....+.+-+..+.+-+|||+.....++.|+..|++.
T Consensus 469 frKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~ 548 (1172)
T KOG0926|consen 469 FRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYES 548 (1172)
T ss_pred HHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccc
Confidence 445566666778899999999999999999988641
Q ss_pred -------------------------------------------------------CCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1699 -------------------------------------------------------GYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1699 -------------------------------------------------------~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
.+-|..+++-++.+.+..+++.--.
T Consensus 549 ~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~ 628 (1172)
T KOG0926|consen 549 DEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPK 628 (1172)
T ss_pred hhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCC
Confidence 0125567777888888888888888
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEE--------eCCCC----------CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVIN--------YDMAK----------SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~--------~d~P~----------s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|.--++|||+|++..+.||+|..||. ||--. |-++--||+|||||.| .|+|+-+++..
T Consensus 629 g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 629 GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99889999999999999999999997 44333 3444569999999986 89999988764
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-15 Score=138.80 Aligned_cols=78 Identities=45% Similarity=0.701 Sum_probs=75.5
Q ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCC
Q psy6409 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770 (1832)
Q Consensus 1693 ~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g 1770 (1832)
+.|+..++.+..+||++++.+|..+++.|.+|..+|||||+++++|||+|++++||++++|.|...|+|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-13 Score=170.50 Aligned_cols=300 Identities=22% Similarity=0.220 Sum_probs=191.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-..-.+ ..+-|+.+.||.|||+++.+|++.... .|..|-|++++..||.+-+.++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL------------~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL------------TGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh------------cCCceEEEeCCHHHHHHHHHHH
Confidence 576 5888887765444 456799999999999999999964322 3777999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|+.|.++.++.+..+.... -.+||+.+|..-+- +.|+.+. .....+.+.||||||.++ |..
T Consensus 138 ~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 138 GQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred HHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 99999999999999888887654333 35899999986553 4554432 235668999999999753 110
Q ss_pred -------------ChHHHHHHHHhCCCC----------------------------CCCCCCchhhh---HHHHHhh---
Q psy6409 1571 -------------FEPDVQKILEYMPVT----------------------------NLKPDTEDAED---ENKLLAN--- 1603 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~----------------------------~~~~~~~~~~~---~~~l~~~--- 1603 (1832)
.......+...+... ...+.....+. ...+.+.
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 011111111111100 00000000000 0000000
Q ss_pred ------------------------------------------h---------------ccccCcceEEEEEccCChHHHH
Q psy6409 1604 ------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVER 1626 (1832)
Q Consensus 1604 ------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~~ 1626 (1832)
+ +.-+.+..+.+||.|....-.+
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E 375 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE 375 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH
Confidence 0 0011234577899998776666
Q ss_pred HHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEE
Q psy6409 1627 LARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNAC 1703 (1832)
Q Consensus 1627 ~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~ 1703 (1832)
+...|--+ +..-+...|....... ..+.....|..++++-+.. ..+.||||-|.|+...+.|+..|...|++..
T Consensus 376 f~~iY~l~---vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 376 FEKIYNLE---VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred HHHHhCCC---EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 66655433 2223444444433332 3344555666666655432 3678999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHHHHHHhhCCCCcEEEEcccccccCCCC
Q psy6409 1704 TLHGGKG--QEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742 (1832)
Q Consensus 1704 ~lHg~ls--~~~R~~il~~F~~g~~~VLVATdvl~~GIDip 1742 (1832)
++++.-. ..+-+.|-+.=+. -.|.|||+.++||.||-
T Consensus 453 vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 453 LLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDII 491 (870)
T ss_pred eeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCee
Confidence 9998632 3344433333233 35899999999999974
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=160.64 Aligned_cols=339 Identities=23% Similarity=0.291 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+++||.+.+.++. .|-|.|+.-.-|-|||+-. +++|.|+.... ...|| -||+||.-.| ..+..++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-------~~~GP-fLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-------GIPGP-FLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------CCCCC-eEEEeeHhhH-HHHHHHH
Confidence 78999999999886 5778999999999999852 34444443211 12344 7899998776 5588889
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHH---HhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGF---RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
++|+. ++++++++|+........ ......+|+|+|.+..+.- ...+.--.+.|+||||||++-... ..+..
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHH
Confidence 99875 577899999874332211 1223579999999876533 233344567999999999874431 12222
Q ss_pred HHHhCCCCC----------------------CCCCCchh-----------------hhHH--------HHHhhhc-----
Q psy6409 1578 ILEYMPVTN----------------------LKPDTEDA-----------------EDEN--------KLLANYN----- 1605 (1832)
Q Consensus 1578 Il~~l~~~~----------------------~~~~~~~~-----------------~~~~--------~l~~~~~----- 1605 (1832)
++..+...+ +.|+.... .... .++.+..
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 222221111 01111000 0000 0111100
Q ss_pred cccCcceEEEEEccCChHH--------------------------HH---HHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 1606 SKKKYRQTVMFTATMPPAV--------------------------ER---LARSYLRRPATVYIGSVGKPTERIEQIVYI 1656 (1832)
Q Consensus 1606 ~~~~~~q~v~~SATl~~~~--------------------------~~---~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~ 1656 (1832)
+..+..-+.+ =..|+..- .+ -+++..+.|..+.....+.+....++.+
T Consensus 391 sLppKkE~~i-yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv-- 467 (971)
T KOG0385|consen 391 SLPPKKELII-YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV-- 467 (971)
T ss_pred cCCCcceeeE-eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH--
Confidence 0111111111 11111110 01 1233344554443322222222223332
Q ss_pred cchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC---CcEEEE
Q psy6409 1657 LSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS---KDILVA 1731 (1832)
Q Consensus 1657 ~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~---~~VLVA 1731 (1832)
....|...|-.+|.. ..+++||||..-....+.|-.++.-.+|...-+.|+++.++|...++.|.... .-.|++
T Consensus 468 -~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 468 -TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred -hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 233454444444443 35789999999988888888888888999999999999999999999997543 446889
Q ss_pred cccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccE--EEEEeeCCC
Q psy6409 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDD 1783 (1832)
Q Consensus 1732 Tdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~d 1783 (1832)
|.+.+.|||+-..++||.||--+++..=+|-+-||-|-|+... ++-|++++.
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 9999999999999999999999999999999999999997654 555577763
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=163.83 Aligned_cols=277 Identities=23% Similarity=0.264 Sum_probs=179.8
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
++-+|||.||||.-++ +++. .....+|--|.|-||.++++.+... |+.+-.++|......
T Consensus 194 i~H~GPTNSGKTy~AL----qrl~------------~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRAL----QRLK------------SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred EEEeCCCCCchhHHHH----HHHh------------hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 6778999999998654 3321 2445789999999999999999886 566666776544322
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~ 927 (1832)
... ...++.+-+|.++.. .-..+++.||||+..|-|..++-.+..-+--+. +
T Consensus 254 ~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------------------A 305 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------------------A 305 (700)
T ss_pred CCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------------------h
Confidence 211 123667778877651 234679999999999988776655444322111 0
Q ss_pred hhccccccceEEEEEecCChHHHHHHHHhcCCC-cEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEE
Q psy6409 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIF 1006 (1832)
Q Consensus 928 ~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p-~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVF 1006 (1832)
....+.+= +.+-.+.+..+... ..+.+..... +..-.-.+.++.-+....++.+||
T Consensus 306 ------dEiHLCGe-----psvldlV~~i~k~TGd~vev~~YeR-----------l~pL~v~~~~~~sl~nlk~GDCvV- 362 (700)
T KOG0953|consen 306 ------DEIHLCGE-----PSVLDLVRKILKMTGDDVEVREYER-----------LSPLVVEETALGSLSNLKPGDCVV- 362 (700)
T ss_pred ------hhhhccCC-----chHHHHHHHHHhhcCCeeEEEeecc-----------cCcceehhhhhhhhccCCCCCeEE-
Confidence 01111111 12333444433211 1111111111 111111113334444445555544
Q ss_pred EcccchHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHhC--CCCcEEEecccccccCCCcCcCEEEEcCCC-----
Q psy6409 1007 VNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYDMA----- 1078 (1832)
Q Consensus 1007 v~s~~~~~~l~~~L~~~g~~-v~~lhg~~~~~~R~~il~~F~~--G~~~VLVaTdv~~rGlDip~v~~VI~~d~p----- 1078 (1832)
|-+++.+-.+...+.+.|.. +++++|+++++.|..--..|.+ ++++||||||+.++|+|+ +|+-||.|++-
T Consensus 363 ~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~ 441 (700)
T KOG0953|consen 363 AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGR 441 (700)
T ss_pred EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcc
Confidence 33777888888889888766 9999999999999999999987 999999999999999999 78999988773
Q ss_pred ----CCHhHHHHHhcccccCCCC---cEEEEEecCCCchHHHHHHHHHh
Q psy6409 1079 ----KSIEDYTHRIGRTGRAGKE---GLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1079 ----~s~~~yvQr~GRaGR~g~~---G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
.+..+..|.+|||||.|.. |.+.+|..++ +..|...++
T Consensus 442 e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD----L~~L~~~l~ 486 (700)
T KOG0953|consen 442 ETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED----LKLLKRILK 486 (700)
T ss_pred cceeccHHHHHHHhhcccccccCCcCceEEEeeHhh----HHHHHHHHh
Confidence 4678899999999998753 7777766543 445555444
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-12 Score=163.10 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC----CCCcEEEecccccccC
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG----GSKDILVATDVAGRGI 1064 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~----G~~~VLVaTdv~~rGl 1064 (1832)
..+..++. ...+.++|.+.|....+.+++.|...---...+.|..+ .+..+++.|+. |.-.||++|+.+.+||
T Consensus 460 ~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 34444444 34568999999999999999999653222344555443 35667888886 5789999999999999
Q ss_pred CC----------cCcCEEEEcCCCC
Q psy6409 1065 DI----------KDVSMVINYDMAK 1079 (1832)
Q Consensus 1065 Di----------p~v~~VI~~d~p~ 1079 (1832)
|+ +.+++||...+|.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCC
Confidence 99 3488999877763
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=157.53 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHhhC----CCCcEEEEcccccccCC
Q psy6409 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKG----GSKDILVATDVAGRGID 1740 (1832)
Q Consensus 1666 l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~-~~~v~~lHg~ls~~~R~~il~~F~~----g~~~VLVATdvl~~GID 1740 (1832)
+..++. ...+.++|.+.|....+.++..|... .+. ..+.|..+ .+...++.|+. |.-.||++|+.+.+|||
T Consensus 462 ~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 462 TAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 344444 34568999999999999999998653 333 34455432 35668888887 47899999999999999
Q ss_pred C----------CCCCEEEEeCCCC-------------------------CHHHHHHHhcccccCCC---ccEEEEEeeC
Q psy6409 1741 I----------KDVSMVINYDMAK-------------------------SIEDYTHRIGRTGRAGK---EGLAVSFCTK 1781 (1832)
Q Consensus 1741 i----------p~v~~VI~~d~P~-------------------------s~~~yiQRiGRaGR~g~---~G~ai~~~~~ 1781 (1832)
+ ..+++||...+|- .+..+.|-+||-=|... .|..+++-..
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 9 2488999877662 13346788999999644 4544444333
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=164.60 Aligned_cols=299 Identities=21% Similarity=0.266 Sum_probs=192.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++..| -|+.+.||-|||+++.+|++... -.|..|-||.++--||..-++.+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnA------------L~GkgVhVVTvNdYLA~RDae~m 146 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNA------------LTGKGVHVVTVNDYLARRDAEWM 146 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHh------------hcCCCeEEEeCCHHHHHhHHHHH
Confidence 454 6888888777666666 48999999999999999998543 24777999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-----HHHHHc--cccccCCceeEEEecchhhh-cCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-----IDVLEN--RYLVLNQCTYIVLDEADRMI-DMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-----~d~l~~--~~~~l~~~~~lViDEaH~l~-d~gf~ 897 (1832)
..+...+|+.|+++.++++..+.. ..-.|+|+++|+..| -|.+.. .......+.|.||||||.++ |...-
T Consensus 147 ~~vy~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArT 224 (939)
T PRK12902 147 GQVHRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEART 224 (939)
T ss_pred HHHHHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCC
Confidence 999999999999999888765543 334799999999887 333321 12345678999999999754 22111
Q ss_pred H---------------HHHHHHHhCCC------C-----------------------------CCCCCCch---------
Q psy6409 898 P---------------DVQKILEYMPV------T-----------------------------NLKPDTED--------- 918 (1832)
Q Consensus 898 ~---------------~i~~Il~~l~~------~-----------------------------~~~~~~~~--------- 918 (1832)
| ....+...+.. . ++. +..+
T Consensus 225 PLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy-~~~~~~~~~i~~A 303 (939)
T PRK12902 225 PLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLF-DPQDPWAHYIFNA 303 (939)
T ss_pred cccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhc-CcccHHHHHHHHH
Confidence 1 11112211111 0 000 0000
Q ss_pred ------------------------------------hHHHHHHHHhhc------------------cccccceEEEEEec
Q psy6409 919 ------------------------------------AEDENKLLANYN------------------SKKKYRQTVMFTAT 944 (1832)
Q Consensus 919 ------------------------------------~~~~~~ll~~~~------------------~~~~~~q~v~~SAT 944 (1832)
.+.+...+..-+ -.+.+..+.++|+|
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGT 383 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGT 383 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 000000000000 01234567788889
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHH
Q psy6409 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 945 l~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~ 1021 (1832)
.......|...|--+ +..-+...|......- ..+.....|...+.+-+.. ..+.||||-+.|.+..+.++..|.
T Consensus 384 a~te~~Ef~~iY~l~---Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~ 460 (939)
T PRK12902 384 AKTEEVEFEKTYKLE---VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQ 460 (939)
T ss_pred CHHHHHHHHHHhCCc---EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHH
Confidence 866666666665432 2222233333322221 2344556777777655443 367899999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHH-HHH-HHHhCCCCcEEEecccccccCCCc
Q psy6409 1022 KLGYNACTLHGGKGQEQRE-LAL-NSLKGGSKDILVATDVAGRGIDIK 1067 (1832)
Q Consensus 1022 ~~g~~v~~lhg~~~~~~R~-~il-~~F~~G~~~VLVaTdv~~rGlDip 1067 (1832)
..|++..++++.-...+++ .|+ +.-+.| .|-|||++|+||-||.
T Consensus 461 ~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 461 EQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred HcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 9999999999963332333 233 322333 5899999999998873
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=150.34 Aligned_cols=327 Identities=18% Similarity=0.248 Sum_probs=193.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+..|+..+.++...+.|++..--.-..++...+..+.++.-+++++.||||||.- +|-...-...+ ...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~---------~~~ 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELS---------HLT 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHh---------hcc
Confidence 5567777788888888776433223334444555556677899999999999963 33322111111 124
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
.|.+..|.|--|.+++..... .+++....-+|..-+.+.... .+.-+-.+|.+.|+.-..+. -.+..+++||+|
T Consensus 93 ~v~CTQprrvaamsva~RVad---EMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~-p~l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVAD---EMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD-PLLGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHHH---HhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC-cccccccEEEec
Confidence 588899999888886655443 223322222222221111000 00001124444443332222 247889999999
Q ss_pred cchhh-hcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1562 EADRM-IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1562 EaH~l-l~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
|||.= +. .+.+. .++......+....+|.+|||+-. ...+.|+.++..+.+
T Consensus 167 eahERtlA---TDiLm----------------------Gllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~v 218 (699)
T KOG0925|consen 167 EAHERTLA---TDILM----------------------GLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAV 218 (699)
T ss_pred hhhhhhHH---HHHHH----------------------HHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeec
Confidence 99931 10 11111 122222223356789999999843 234556666655555
Q ss_pred cccCCCCcceEEEEEEcchhhHH----HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH----c-----CCcEEEEcC
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKR----KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK----L-----GYNACTLHG 1707 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~----~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~----~-----~~~v~~lHg 1707 (1832)
.. .. .++-++..-.+.+.. ..++++......+-+|||....+..+..++.+.. + .+.|..+|
T Consensus 219 pg-~~---PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy- 293 (699)
T KOG0925|consen 219 PG-TH---PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY- 293 (699)
T ss_pred CC-CC---ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC-
Confidence 43 22 223333333333333 3344444444678899999998887777776653 2 35677777
Q ss_pred CCCHHHHHHHHHHhh---CC--CCcEEEEcccccccCCCCCCCEEEEeCC------------------CCCHHHHHHHhc
Q psy6409 1708 GKGQEQRELALNSLK---GG--SKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIG 1764 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~---~g--~~~VLVATdvl~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiG 1764 (1832)
+.++..+++-.- +| .-+|+|+|++++..+-|+.|.+||.-++ |-|-.+-.||.|
T Consensus 294 ---P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~g 370 (699)
T KOG0925|consen 294 ---PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 370 (699)
T ss_pred ---chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhh
Confidence 444444443332 12 2369999999999999999999997443 668889999999
Q ss_pred ccccCCCccEEEEEeeCC
Q psy6409 1765 RTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1765 RaGR~g~~G~ai~~~~~~ 1782 (1832)
||||. ..|.|+-++++.
T Consensus 371 ragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 371 RAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hccCC-CCCceEEeecHH
Confidence 99996 689999999975
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-14 Score=171.16 Aligned_cols=313 Identities=19% Similarity=0.184 Sum_probs=183.0
Q ss_pred CCCCCcHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNR----DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~----dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
.-..|+|+|++|+..+++|- --=+++.+|+|||+.++-.+- .+ ...++|+|||+..|..|..
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisE-al-------------a~~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISE-AL-------------AAARILFLVPSISLLSQTL 223 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHH-HH-------------hhhheEeecchHHHHHHHH
Confidence 44689999999999998651 133456789999998754332 11 2367999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEECCcchHHH-------------------H------HHhhcCCcEEEeCHHHHHHHHHcccccc
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSREEQ-------------------G------FRLRLGCEIVIATPGRLIDVLENRYLVL 1552 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~~~-------------------~------~~l~~~~~IiVaTP~rl~~~l~~~~~~l 1552 (1832)
++|... +.+.++...++++...... . ..-..+--||++|.+.+..+-.....-+
T Consensus 224 rew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 224 REWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 998875 3456666655554321100 0 0011234688899988877766666778
Q ss_pred CCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH-------
Q psy6409 1553 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE------- 1625 (1832)
Q Consensus 1553 ~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~------- 1625 (1832)
..+++||.||||+..+......=..-+.++. + .+.-+....+.+|||+.-.-+
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~vH-------s-------------~~niKa~kRlYmTATPkiy~eS~K~kAk 362 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRVH-------S-------------DQNIKAAKRLYMTATPKIYSESSKAKAK 362 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceeec-------C-------------cchhHHHHhhhcccCchhhchhhhhhhh
Confidence 8999999999998654221100000000000 0 000011123344555321100
Q ss_pred --------------------------HHHHHhcCCCcEEEEcc-cCCCCcceEEEEEE------cchhhHHHHHHHHHH-
Q psy6409 1626 --------------------------RLARSYLRRPATVYIGS-VGKPTERIEQIVYI------LSEQDKRKKLMEVLN- 1671 (1832)
Q Consensus 1626 --------------------------~~~~~~l~~p~~v~i~~-~~~~~~~i~q~~~~------~~~~~k~~~l~~~l~- 1671 (1832)
...+..|.+-..+.... .......+.....- .....+..-...-|.
T Consensus 363 d~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlak 442 (1518)
T COG4889 363 DHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAK 442 (1518)
T ss_pred hccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhh
Confidence 01111222211111100 00000000000000 000011111111111
Q ss_pred hC--------------CCCcEEEEECchhHHHHHHHHHHH-------------cCCcEEE--EcCCCCHHHHHHHHHH--
Q psy6409 1672 RG--------------VKKPVIIFVNQKKGADVLAKGLEK-------------LGYNACT--LHGGKGQEQRELALNS-- 1720 (1832)
Q Consensus 1672 ~~--------------~~~~vIVFv~s~~~a~~l~~~L~~-------------~~~~v~~--lHg~ls~~~R~~il~~-- 1720 (1832)
+. +-.+.|-||.++++...++..|.. .++.+.+ ..|.|...+|...+..
T Consensus 443 r~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~ 522 (1518)
T COG4889 443 RNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKN 522 (1518)
T ss_pred hccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccC
Confidence 00 113579999999998888877643 2444444 4588999888655543
Q ss_pred -hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC
Q psy6409 1721 -LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1721 -F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~ 1769 (1832)
|...+++||.....|++|||+|..+.||.+++-.+.-+.+|-+||+.|.
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999993
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=159.19 Aligned_cols=300 Identities=22% Similarity=0.262 Sum_probs=192.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--++.. .-|+-+.||.|||+++.+|++...+ .|..|-||.++--||..=+.++
T Consensus 82 lG~-r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL------------~GkgVhVVTvNdYLA~RDae~m 146 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNAL------------TGKGVHVVTVNDYLARRDAEWM 146 (939)
T ss_pred hCC-CcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhh------------cCCCeEEEeCCHHHHHhHHHHH
Confidence 565 788888776655544 4599999999999999999975432 4777999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|+.|.++.++.++.+.. ..-.|||+++|+..| .+.|+.+ ......+.+.||||||.++ |..
T Consensus 147 ~~vy~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArT 224 (939)
T PRK12902 147 GQVHRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEART 224 (939)
T ss_pred HHHHHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCC
Confidence 999999999999998887766543 334699999999887 2333322 2345678999999999753 211
Q ss_pred -------------ChHHHHHHHHhCCC------C-CC---------------------------CCCCch--h-hhHHHH
Q psy6409 1571 -------------FEPDVQKILEYMPV------T-NL---------------------------KPDTED--A-EDENKL 1600 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~------~-~~---------------------------~~~~~~--~-~~~~~l 1600 (1832)
.......+...+.. . .+ ..+... . .....+
T Consensus 225 PLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL 304 (939)
T PRK12902 225 PLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNAL 304 (939)
T ss_pred cccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHH
Confidence 11111112221111 0 00 000000 0 000000
Q ss_pred Hhh---------------------------------------------h---------------ccccCcceEEEEEccC
Q psy6409 1601 LAN---------------------------------------------Y---------------NSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1601 ~~~---------------------------------------------~---------------~~~~~~~q~v~~SATl 1620 (1832)
.+. + +.-+.+..+.+||.|.
T Consensus 305 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa 384 (939)
T PRK12902 305 KAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTA 384 (939)
T ss_pred HHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCC
Confidence 000 0 0011234667899998
Q ss_pred ChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHH
Q psy6409 1621 PPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEK 1697 (1832)
Q Consensus 1621 ~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~ 1697 (1832)
.....++...|--+ +...+...|....... ..+.....|..++++-+.. ..+.||||-|.|+...+.++..|..
T Consensus 385 ~te~~Ef~~iY~l~---Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~ 461 (939)
T PRK12902 385 KTEEVEFEKTYKLE---VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQE 461 (939)
T ss_pred HHHHHHHHHHhCCc---EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHH
Confidence 77666676666433 2222334444333222 3344556777777765543 3678999999999999999999999
Q ss_pred cCCcEEEEcCC-CC-HHHHHHHHHHhhCCCCcEEEEcccccccCCCC
Q psy6409 1698 LGYNACTLHGG-KG-QEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742 (1832)
Q Consensus 1698 ~~~~v~~lHg~-ls-~~~R~~il~~F~~g~~~VLVATdvl~~GIDip 1742 (1832)
.|++..++++. .. ..+-+.|-+.=+.| .|-|||+.++||-||.
T Consensus 462 ~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 462 QGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred cCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 99999999986 23 33333333333333 4899999999999974
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-12 Score=153.55 Aligned_cols=339 Identities=22% Similarity=0.295 Sum_probs=212.3
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.+++||.+.+.-+. .|-|.|+.-+-|-|||+. .|.+|.|+... ....|| -||+||--.|.. +..+|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~-------~~~~GP-fLVi~P~StL~N-W~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGR-------KGIPGP-FLVIAPKSTLDN-WMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHh-------cCCCCC-eEEEeeHhhHHH-HHHHH
Confidence 67888888776654 367899999999999986 34444454321 122455 688999887755 78899
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHH---HHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGF---RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~---~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
++|+. ++++++++|+........ ......+|+|+|.++.+.- ...+.--.|+||||||||++-+.. ..+..
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHH
Confidence 99975 578889999864222111 1123589999999988643 333344568999999999965432 11112
Q ss_pred HHHhCCCCC----------------------CCCCC--------------------chhHHHH---------HHHHhhcc
Q psy6409 903 ILEYMPVTN----------------------LKPDT--------------------EDAEDEN---------KLLANYNS 931 (1832)
Q Consensus 903 Il~~l~~~~----------------------~~~~~--------------------~~~~~~~---------~ll~~~~~ 931 (1832)
++..+...+ +.|+- .....+. ++-..+..
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 222211100 01110 0000010 11111111
Q ss_pred ccccceEEEEEecCChHHHHH-----------------------------HHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 932 KKKYRQTVMFTATMPPAVERL-----------------------------ARSYLRRPATVYIGSVGKPTERIEQIVYIL 982 (1832)
Q Consensus 932 ~~~~~q~v~~SATl~~~v~~~-----------------------------~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~ 982 (1832)
.-++..-+.+=.+|..--.++ .+...+.|..+.-...+.+...-++ .+
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdeh---Lv 467 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEH---LV 467 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchH---HH
Confidence 111111111112221111111 1222334433322111122222222 23
Q ss_pred chhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC---CCcEEEec
Q psy6409 983 SEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG---SKDILVAT 1057 (1832)
Q Consensus 983 ~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G---~~~VLVaT 1057 (1832)
....|+..|-.+|.. ..+.+||||..--..-+.|-.+....+|..+-+.|.++.++|...++.|... .+-.|++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 334555555555543 3677999999888888888888888999999999999999999999999754 34579999
Q ss_pred ccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1058 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1058 dv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
-+.+-|||+-..++||.||--.++..=+|-.-||-|-|+. =.++.|+|.+
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999998876 4677888877
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=167.23 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=79.4
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCC--CCEEEE
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD--VSMVIN 1749 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~~~--~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~--v~~VI~ 1749 (1832)
..+++|||++|.+..+.++..|..... +..++.-+++...|..+++.|+.++-.||++|..+.+|||+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567899999999999999999875422 1222333444456899999999998899999999999999996 478887
Q ss_pred eCCCC------------------------------CHHHHHHHhcccccCCCc-cEEEEEeeCC
Q psy6409 1750 YDMAK------------------------------SIEDYTHRIGRTGRAGKE-GLAVSFCTKD 1782 (1832)
Q Consensus 1750 ~d~P~------------------------------s~~~yiQRiGRaGR~g~~-G~ai~~~~~~ 1782 (1832)
..+|- -+..+.|-+||.=|..+. |. +++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~-v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT-VFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE-EEEecCc
Confidence 66552 233457889999997543 53 4444443
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=136.36 Aligned_cols=121 Identities=43% Similarity=0.647 Sum_probs=97.8
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
+++++.+|||+|||.+++.++...... ....+++|++|++.|+.|+...+...... ++.+..+.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcch
Confidence 468999999999999998888765422 24578999999999999999999988665 6788888888776
Q ss_pred HHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCCh
Q psy6409 846 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 846 ~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
...........+|+++|++.+...+.........+++|||||+|.+....+.
T Consensus 70 ~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 70 KQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred hHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchH
Confidence 6655555668999999999998877766555678899999999988765433
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=167.81 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcccchHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc--CEEE
Q psy6409 998 GVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV--SMVI 1073 (1832)
Q Consensus 998 ~~~~~vIVFv~s~~~~~~l~~~L~~~g~--~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v--~~VI 1073 (1832)
..++++|||++|....+.++..|..... ....+.=+++...|..+++.|+.+.-.||++|..+.+|||+|+- .+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3567899999999999999999975422 12222224444568899999999988999999999999999975 6888
Q ss_pred EcCCCC------------------------------CHhHHHHHhcccccCCCCcEEEEEecC
Q psy6409 1074 NYDMAK------------------------------SIEDYTHRIGRTGRAGKEGLAVSFCTK 1106 (1832)
Q Consensus 1074 ~~d~p~------------------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~ 1106 (1832)
...+|. -+..+.|-+||.=|...+--+++++..
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 766653 123457888888887654223444433
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-12 Score=152.94 Aligned_cols=267 Identities=22% Similarity=0.251 Sum_probs=171.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
++-++||.||||.-+ |+.+. .....+|--|.|-||.++++.+.+. |+.+-.++|.--...
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~------------~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLK------------SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHh------------hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 667899999999865 33332 2445899999999999999999886 566666777543221
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHh
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~ 1602 (1832)
... ...+..+-||.++.. .-..+.+.||||+++|-+...+-.+.+-+--+..
T Consensus 254 ~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A------------------ 305 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAA------------------ 305 (700)
T ss_pred CCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhh------------------
Confidence 110 112556667765331 2345789999999988877666555443322210
Q ss_pred hhccccCcceEEEEEccCChHHHHHHHHhcCCC-cEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEE
Q psy6409 1603 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIF 1681 (1832)
Q Consensus 1603 ~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p-~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVF 1681 (1832)
....+.+ .+.+..+.+..+... ..+.+.. |..+....-...+..-+.....+-+||
T Consensus 306 ------dEiHLCG-----epsvldlV~~i~k~TGd~vev~~-----------YeRl~pL~v~~~~~~sl~nlk~GDCvV- 362 (700)
T KOG0953|consen 306 ------DEIHLCG-----EPSVLDLVRKILKMTGDDVEVRE-----------YERLSPLVVEETALGSLSNLKPGDCVV- 362 (700)
T ss_pred ------hhhhccC-----CchHHHHHHHHHhhcCCeeEEEe-----------ecccCcceehhhhhhhhccCCCCCeEE-
Confidence 0011111 123344444443211 1122111 111111111123333444444444544
Q ss_pred ECchhHHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHhhC--CCCcEEEEcccccccCCCCCCCEEEEeCCC-----
Q psy6409 1682 VNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYDMA----- 1753 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~~~-v~~lHg~ls~~~R~~il~~F~~--g~~~VLVATdvl~~GIDip~v~~VI~~d~P----- 1753 (1832)
|=|++..-.+...+...|.. +++++|+++++.|..--..|.+ ++++||||||+.+.|+|+ ++.-||.|++-
T Consensus 363 ~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~ 441 (700)
T KOG0953|consen 363 AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGR 441 (700)
T ss_pred EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcc
Confidence 34667777788888877765 9999999999999999999987 999999999999999999 69999987753
Q ss_pred ----CCHHHHHHHhcccccCCC---ccEEEEEeeC
Q psy6409 1754 ----KSIEDYTHRIGRTGRAGK---EGLAVSFCTK 1781 (1832)
Q Consensus 1754 ----~s~~~yiQRiGRaGR~g~---~G~ai~~~~~ 1781 (1832)
-+..+..|.+|||||+|. .|.+.+|-.+
T Consensus 442 e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 442 ETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred cceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 368899999999999874 4777777654
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-12 Score=133.96 Aligned_cols=121 Identities=43% Similarity=0.647 Sum_probs=97.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcch
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~ 1520 (1832)
+++++.+|||+|||.+++.++...... ....+++|++|++.|+.|+...+...... +..+..+.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcch
Confidence 478999999999999998888765432 24578999999999999999999887654 6777778887776
Q ss_pred HHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCCh
Q psy6409 1521 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 1572 (1832)
Q Consensus 1521 ~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~ 1572 (1832)
.........+.+|+++|++.+...+.........+++|||||+|.+....+.
T Consensus 70 ~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 70 KQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred hHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchH
Confidence 6655555668999999999998888766556678899999999988765443
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=123.04 Aligned_cols=81 Identities=49% Similarity=0.763 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC
Q psy6409 1690 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1690 ~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~ 1769 (1832)
.++..|...++.+..+||++++.+|..+++.|.+|...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy6409 1770 G 1770 (1832)
Q Consensus 1770 g 1770 (1832)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=156.62 Aligned_cols=318 Identities=22% Similarity=0.223 Sum_probs=185.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHc--------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGLQ--------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il~--------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
.+.|.+.--...+.+|-.|+..+.. |--+|-.|.||||||++=+-.|.. +.....|.+..|-
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImya----------Lsd~~~g~RfsiA 467 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYA----------LRDDKQGARFAIA 467 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHH----------hCCCCCCceEEEE
Confidence 3444444444567789999988875 223777899999999975543321 1234567788888
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH------------------------------------------
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG------------------------------------------ 849 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~------------------------------------------ 849 (1832)
.-.|.|-.|+-..+++.+.--.-..++++||....+-.
T Consensus 468 LGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l 547 (1110)
T TIGR02562 468 LGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIEL 547 (1110)
T ss_pred ccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhh
Confidence 88888888888888876543344566666664322100
Q ss_pred -HHHh--------cCCceeecCHHHHHHHHH--cc-ccccC----CceeEEEecchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 850 -FRLR--------LGCEIVIATPGRLIDVLE--NR-YLVLN----QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913 (1832)
Q Consensus 850 -~~l~--------~~~~IlV~TP~rL~d~l~--~~-~~~l~----~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~ 913 (1832)
..+. -...|+|||+..++-... +. ...+. .-+.|||||+| .|.+....++.++-
T Consensus 548 ~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVH-----aYD~~~~~~L~rlL----- 617 (1110)
T TIGR02562 548 LGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPD-----DYEPEDLPALLRLV----- 617 (1110)
T ss_pred hhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCc-----cCCHHHHHHHHHHH-----
Confidence 0000 026799999998886662 21 11111 12689999999 33333333322220
Q ss_pred CCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH-HHHh----------cCC---CcEE---EEcccCC------
Q psy6409 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL-ARSY----------LRR---PATV---YIGSVGK------ 970 (1832)
Q Consensus 914 ~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~-~~~~----------l~~---p~~v---~~~~~~~------ 970 (1832)
.++.. -...++++|||||+.+... ...| ... |..+ .++....
T Consensus 618 ----------~w~~~-----lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~ 682 (1110)
T TIGR02562 618 ----------QLAGL-----LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCN 682 (1110)
T ss_pred ----------HHHHH-----cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhc
Confidence 01111 1256899999999987542 2222 122 2111 1111100
Q ss_pred -----------------------CCcceEEEEEEcchh-----hHHHH--------HHHHHHcC----C--CCC---EEE
Q psy6409 971 -----------------------PTERIEQIVYILSEQ-----DKRKK--------LMEVLNRG----V--KKP---VII 1005 (1832)
Q Consensus 971 -----------------------~~~~i~q~~~~~~~~-----~k~~~--------L~~~l~~~----~--~~~---vIV 1005 (1832)
+..... .+..+... ..... ++.++..+ + +++ .+|
T Consensus 683 ~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a-~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGli 761 (1110)
T TIGR02562 683 QKSEFIQRHQDFLRDRAVQLAKKPVRRLA-ELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLI 761 (1110)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCcccceE-EEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEE
Confidence 000011 11111111 11112 22222221 1 112 467
Q ss_pred EEcccchHHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHH----------------------hC----CCCcE
Q psy6409 1006 FVNQKKGADVLAKGLEKL------GYNACTLHGGKGQEQRELALNSL----------------------KG----GSKDI 1053 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~------g~~v~~lhg~~~~~~R~~il~~F----------------------~~----G~~~V 1053 (1832)
=+++++.+-.++..|... .+.++++|+..+...|..+++.. .+ +...|
T Consensus 762 R~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i 841 (1110)
T TIGR02562 762 RVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFI 841 (1110)
T ss_pred EEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeE
Confidence 778888888888888654 24578899999888887766543 12 46789
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
+|||.+.+.|+|+ +.+++|- -|.++.+.+|++||+.|.|.
T Consensus 842 ~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 842 VLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 9999999999998 4665543 36789999999999999775
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-12 Score=122.67 Aligned_cols=81 Identities=49% Similarity=0.763 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1015 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1015 ~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
.+++.|...++.+..+||+++..+|..+++.|.+|...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy6409 1095 G 1095 (1832)
Q Consensus 1095 g 1095 (1832)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-12 Score=155.72 Aligned_cols=330 Identities=19% Similarity=0.194 Sum_probs=186.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCC----cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 741 EIIEKIGYAEPTPIQRQAIPIGLQNR----DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 741 ~~l~~~g~~~pt~iQ~~ai~~il~gr----dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
..|.-..-.+|+|+|++||.+++.|- --=+++..|+|||+..+- |-..+ ...++|+|+|+..
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEal-------------a~~~iL~LvPSIs 217 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEAL-------------AAARILFLVPSIS 217 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHH-------------hhhheEeecchHH
Confidence 33333345789999999999999751 134456679999998654 32222 2378999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH-----------------------H--HHhcCCceeecCHHHHHHHHH
Q psy6409 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG-----------------------F--RLRLGCEIVIATPGRLIDVLE 871 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~-----------------------~--~l~~~~~IlV~TP~rL~d~l~ 871 (1832)
|..|..+....- ..+.++...++++....... . .-..+--||++|.+.+...-.
T Consensus 218 LLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 218 LLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 999977776653 34566666666554321100 0 001234588888888866655
Q ss_pred ccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHH-
Q psy6409 872 NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE- 950 (1832)
Q Consensus 872 ~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~- 950 (1832)
-....+..+++||-||||+-........=..-+.++. .... -+...-+.++||..-.-+
T Consensus 297 AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vH---------s~~n-----------iKa~kRlYmTATPkiy~eS 356 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVH---------SDQN-----------IKAAKRLYMTATPKIYSES 356 (1518)
T ss_pred HHHcCCCCccEEEecchhccccceecccCcccceeec---------Ccch-----------hHHHHhhhcccCchhhchh
Confidence 5556788999999999998542111000000000000 0000 001112333444211100
Q ss_pred --------------------------------HHHHHhcCCCcEEEEcccCC-CCcceEEEEEEcc------hhhHHHHH
Q psy6409 951 --------------------------------RLARSYLRRPATVYIGSVGK-PTERIEQIVYILS------EQDKRKKL 991 (1832)
Q Consensus 951 --------------------------------~~~~~~l~~p~~v~~~~~~~-~~~~i~q~~~~~~------~~~k~~~L 991 (1832)
.+.+..+.+...+...-... ....+........ ...++.-.
T Consensus 357 ~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~ 436 (1518)
T COG4889 357 SKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGC 436 (1518)
T ss_pred hhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhh
Confidence 11112222222111110000 0000000000000 01111111
Q ss_pred HHHHHcC---------------CCCCEEEEEcccchHHHHHHHHHH-------------cCCcEEE--EcCCCCHHHHHH
Q psy6409 992 MEVLNRG---------------VKKPVIIFVNQKKGADVLAKGLEK-------------LGYNACT--LHGGKGQEQREL 1041 (1832)
Q Consensus 992 ~~~l~~~---------------~~~~vIVFv~s~~~~~~l~~~L~~-------------~g~~v~~--lhg~~~~~~R~~ 1041 (1832)
..-|... +-.+.|-||.+.++...+++.+.. .++.+.+ +.|.|...+|..
T Consensus 437 wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~ 516 (1518)
T COG4889 437 WNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLD 516 (1518)
T ss_pred hhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHH
Confidence 1111110 112578999999888777776632 2444554 457899888865
Q ss_pred HHH---HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC--CCC-cEEEEEec
Q psy6409 1042 ALN---SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKE-GLAVSFCT 1105 (1832)
Q Consensus 1042 il~---~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~--g~~-G~ai~~~~ 1105 (1832)
.+. .|...+++||--...+++|||+|..+-||.|++-.++-+.+|-+||.-|- |+. |..|+=+.
T Consensus 517 l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 517 LLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred HHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 544 45778999999999999999999999999999999999999999999994 433 65555443
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=9e-11 Score=151.79 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=102.4
Q ss_pred EcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 981 ILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 981 ~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
+.....|...+.+-+.. ..+.||||-+.|.+..+.|+..|...|++..++++.....+-+.|-+.-+.| .|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEecc
Confidence 34556677776665543 3677999999999999999999999999988888875554544444444444 4899999
Q ss_pred cccccCCCc--------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1059 VAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1059 v~~rGlDip--------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
+|+||-||. +==+||--..+.|..--.|-.|||||-|.+|.+-.|++-+|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 999999996 33589988889999999999999999999999999999887
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=138.48 Aligned_cols=152 Identities=24% Similarity=0.229 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQ-------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~-------g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
+|+|+|.+|+..+.. .+++++.+|||||||.+++..+..... .+||++|+..|+.|+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------------ceeEecCHHHHHHHHH
Confidence 589999999999883 588999999999999998866654431 7999999999999999
Q ss_pred HHHHHhcCCCCCeEEE-----------EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-----------ccccCCc
Q psy6409 1498 EETNKFGTPLGIRTVL-----------VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----------YLVLNQC 1555 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~-----------l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-----------~~~l~~v 1555 (1832)
..+..+.......... ..................+++++|.+.|....... .......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997764322110000 00111111122222346789999999998776531 1345577
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCC
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 1621 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~ 1621 (1832)
++||+||||++.... .+..|+. . ....+++||||+.
T Consensus 148 ~~vI~DEaH~~~~~~---~~~~i~~-~--------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDS---SYREIIE-F--------------------------KAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHH---HHHHHHH-S--------------------------SCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHH---HHHHHHc-C--------------------------CCCeEEEEEeCcc
Confidence 999999999875432 1344443 1 2356899999985
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-12 Score=138.61 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQ-------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~-------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
+|+++|.+|+..+.. ++++++.+|||||||.+++..+.... . +++|++|+..|+.|+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------~--~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------R--KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------C--EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------c--ceeEecCHHHHHHHHH
Confidence 578999999999984 58899999999999999886665432 1 8999999999999999
Q ss_pred HHHHHhcCCCCCeEEE-----------EEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-----------ccccCCc
Q psy6409 823 EETNKFGTPLGIRTVL-----------VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----------YLVLNQC 880 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~-----------~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-----------~~~l~~~ 880 (1832)
..+..+.......... ...................++++|.+.|....... .......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997664432111000 00111111111222346889999999998776431 1245577
Q ss_pred eeEEEecchhhhc
Q psy6409 881 TYIVLDEADRMID 893 (1832)
Q Consensus 881 ~~lViDEaH~l~d 893 (1832)
++||+||||++..
T Consensus 148 ~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 148 DLVIIDEAHHYPS 160 (184)
T ss_dssp SEEEEETGGCTHH
T ss_pred CEEEEehhhhcCC
Confidence 8999999998764
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=147.98 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=76.9
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH--
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ-- 848 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~-- 848 (1832)
.+.+|||||.+|+-.+-..+. .|..+|||+|...|+.|+...|+.... +..++.++++.+..+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~------------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR------------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYR 231 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH------------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHH
Confidence 344699999999887765542 477899999999999999999998743 2568889988876543
Q ss_pred -HHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 849 -GFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 849 -~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
+..+..| +.|||||-..+ +..+.++.+|||||-|-
T Consensus 232 ~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred HHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCc
Confidence 3444445 78999997655 45788999999999993
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=149.20 Aligned_cols=118 Identities=24% Similarity=0.315 Sum_probs=103.6
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC---CCCcEEEEcccccccCCCCCCCEEEEe
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG---GSKDILVATDVAGRGIDIKDVSMVINY 1750 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~---g~~~VLVATdvl~~GIDip~v~~VI~~ 1750 (1832)
.+++||||..-.+..+.|+++|...+|+..-+.|+...+.|+.+++.|.. .....|.||-+.+.|||+-..+.||+|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 45799999999999999999999999999999999999999999999974 445689999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccccCCCccE--EEEEeeCCC--hhHHHHHH
Q psy6409 1751 DMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDD--SHLFYDLK 1791 (1832)
Q Consensus 1751 d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~d--~~~~~~l~ 1791 (1832)
|--+|+.+=+|-..||-|-|+... ++-||+.+. .+++..-.
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH
Confidence 999999999999999999998754 555688763 34554443
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=149.64 Aligned_cols=91 Identities=24% Similarity=0.180 Sum_probs=70.1
Q ss_pred EEEEECchhHHHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHh----------------------hC----CC
Q psy6409 1678 VIIFVNQKKGADVLAKGLEKL------GYNACTLHGGKGQEQRELALNSL----------------------KG----GS 1725 (1832)
Q Consensus 1678 vIVFv~s~~~a~~l~~~L~~~------~~~v~~lHg~ls~~~R~~il~~F----------------------~~----g~ 1725 (1832)
.+|-++++..+-.+|..|... .+.+.+||+......|..+++.+ .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477788888888888877654 24477899999877777665443 12 46
Q ss_pred CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC
Q psy6409 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1726 ~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~ 1771 (1832)
..|+|||.+.+.|+|+ +++.+|- -|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 6899999999999999 5777654 36679999999999999764
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-10 Score=140.69 Aligned_cols=349 Identities=16% Similarity=0.188 Sum_probs=201.2
Q ss_pred CCcHHHHHHHHHHhc---C-------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQ---N-------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~---g-------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
.++|+|.+.+.-++. | ...|+.-..|+|||+..+.-|-.++.+.|.... --.++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-----cccccEEEccH-HHHH
Confidence 678999999987763 2 246667788999999866666666766664221 23568999995 6888
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcch--HHHHHHh-----hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSR--EEQGFRL-----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~--~~~~~~l-----~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
-++++|.++.....+....++|.... ......+ .-...|++-+-+.+.+.+. .+....+++||+||.|++-
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCcc
Confidence 89999988865545666777777664 0000001 1124566777776654433 3567789999999999742
Q ss_pred c----------------------CCChHHHHHHHHhC---CCCCC---------------CCCC--chh--hh----HHH
Q psy6409 1568 D----------------------MGFEPDVQKILEYM---PVTNL---------------KPDT--EDA--ED----ENK 1599 (1832)
Q Consensus 1568 ~----------------------~gf~~~l~~Il~~l---~~~~~---------------~~~~--~~~--~~----~~~ 1599 (1832)
. --|...+...++.+ .+..+ .... ... .. ...
T Consensus 390 N~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 390 NSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred chhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 1 11333333333322 11110 0000 000 00 011
Q ss_pred HH---hhhccc-----------cCcceEEEEEccCCh--HHHHH-------------------HHHhcCCCcEEEEcccC
Q psy6409 1600 LL---ANYNSK-----------KKYRQTVMFTATMPP--AVERL-------------------ARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1600 l~---~~~~~~-----------~~~~q~v~~SATl~~--~~~~~-------------------~~~~l~~p~~v~i~~~~ 1644 (1832)
+. ..+-.. ...-.+|++-.|.-. .+..+ +....+.|..+......
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11 111000 011134444333211 01111 12222334333211000
Q ss_pred C------C-Ccc-----eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEE----CchhHHHHHHHHHHHcCCcEEEEcCC
Q psy6409 1645 K------P-TER-----IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV----NQKKGADVLAKGLEKLGYNACTLHGG 1708 (1832)
Q Consensus 1645 ~------~-~~~-----i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv----~s~~~a~~l~~~L~~~~~~v~~lHg~ 1708 (1832)
. . ... ......-.....+...|..+|... ...+++|| |.+.+-+.+...+...|+.+..+||.
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 0 0 000 001111122345556666665322 23344444 44444455555555569999999999
Q ss_pred CCHHHHHHHHHHhhCCCC--c-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE--eeCC
Q psy6409 1709 KGQEQRELALNSLKGGSK--D-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF--CTKD 1782 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~--~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~--~~~~ 1782 (1832)
|+..+|..+++.|.+... . .|.+|.+.+.||++-+.+.||.||..+|++.=.|-++||-|.|++-.|++| +...
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999986443 3 455678889999999999999999999999999999999999998777666 4443
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=140.87 Aligned_cols=335 Identities=20% Similarity=0.208 Sum_probs=208.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHH--HHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLA--FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla--~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
.+.|||+..+.+++ ++..-|+.-.-|-|||.- +.|+.|.+- . .-...+|||||. .|+.|+.+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S------~-----k~~~paLIVCP~-Tii~qW~~ 272 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS------G-----KLTKPALIVCPA-TIIHQWMK 272 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc------c-----cccCceEEEccH-HHHHHHHH
Confidence 67899999999987 456789999999999963 223333221 0 122569999996 57789999
Q ss_pred HHHHhcCCCCCeEEEEECCcch---------HHHHHHh----hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSR---------EEQGFRL----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~---------~~~~~~l----~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ 1565 (1832)
+|..+..+ ++|.+++|..+. ......+ .....|+|+|-..+. +....+.-..++|+|+||.|+
T Consensus 273 E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 273 EFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHR 348 (923)
T ss_pred HHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCccc
Confidence 99998754 567777765442 0001111 124679999976552 112233445679999999998
Q ss_pred hhcCC----------------------ChHHHH---HHHHhCCCCCCCCCCchh---------------hh--------H
Q psy6409 1566 MIDMG----------------------FEPDVQ---KILEYMPVTNLKPDTEDA---------------ED--------E 1597 (1832)
Q Consensus 1566 ll~~g----------------------f~~~l~---~Il~~l~~~~~~~~~~~~---------------~~--------~ 1597 (1832)
+-... +...+. .++.+..+..+-..+... .+ +
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 64322 222222 233333221111100000 00 0
Q ss_pred H---------HHHhhh-------ccccCcceEEEEEccCChHHHHHHHHh--------------------------cCCC
Q psy6409 1598 N---------KLLANY-------NSKKKYRQTVMFTATMPPAVERLARSY--------------------------LRRP 1635 (1832)
Q Consensus 1598 ~---------~l~~~~-------~~~~~~~q~v~~SATl~~~~~~~~~~~--------------------------l~~p 1635 (1832)
. -++.+. ....+.-++++++-|.- -..+...| .+.|
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~--QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKL--QRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHH--HHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence 0 011111 11123335666665532 11222222 2222
Q ss_pred cEEEEcccCCCCcceEEE--E-EEcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHH-HcCCcEEEEcCCC
Q psy6409 1636 ATVYIGSVGKPTERIEQI--V-YILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGK 1709 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~--~-~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~-~~~~~v~~lHg~l 1709 (1832)
..+.-... ...+. + -......|...+..++... .+.++|+|..++...+.|-..|. ..++...-+.|..
T Consensus 507 dll~~~~~-----~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT 581 (923)
T KOG0387|consen 507 DLLDRRDE-----DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTT 581 (923)
T ss_pred ccccCccc-----ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 22211100 00000 0 1123345667777766543 55699999999999999999998 5799999999999
Q ss_pred CHHHHHHHHHHhhCCCC-c-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEE--EeeCC
Q psy6409 1710 GQEQRELALNSLKGGSK-D-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS--FCTKD 1782 (1832)
Q Consensus 1710 s~~~R~~il~~F~~g~~-~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~--~~~~~ 1782 (1832)
+...|..+++.|.++.. . .|++|.|.+.|+|+-..+-||.||+-+++..=.|-.-||-|.|++-.+++ |++..
T Consensus 582 ~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 582 PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 99999999999997654 3 57789999999999999999999999999999999999999997644443 46655
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-10 Score=144.80 Aligned_cols=127 Identities=22% Similarity=0.333 Sum_probs=103.7
Q ss_pred EcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1656 ILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1656 ~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
+.....|..++++-+.. ..+.||||-+.|+...+.|+..|...|++..++++.....+.+.|-+.=+.| .|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEecc
Confidence 34556777777766543 3678999999999999999999999999988888776555555555544444 4899999
Q ss_pred cccccCCCC--------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1734 VAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1734 vl~~GIDip--------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.++||.||. +=-+||-...+.|..---|-.|||||-|.+|.+..|++-.|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999996 335899999999999999999999999999999999987763
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.3e-10 Score=141.39 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHc---CC----c---EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 750 EPTPIQRQAIPIGLQ---NR----D---IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~---gr----d---vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
.+.|+|.+.+.-+.. |. + .|+.=..|+|||+..+..|..++.+.|.... .-.++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-----cccccEEEccH-HHHH
Confidence 578999999987764 22 2 4555578999999877666666665543211 23579999996 6888
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh---------cCCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---------LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~---------~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
-+.++|.++.....+....++|+... ++..+. -...|++.+.+.+.+.+.. +.+..+++||+||.|+
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCC
Confidence 89999999977667778888887763 111111 1356888888888655543 4567889999999997
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC-hHHHH-HHHHhcCCCcEEEE---
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP-PAVER-LARSYLRRPATVYI--- 965 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~-~~v~~-~~~~~l~~p~~v~~--- 965 (1832)
+-+.. ..+...+..+ .-..-|++|.|+= +++.. |.-.-+.+|..+--
T Consensus 388 lkN~~--s~~~kaL~~l--------------------------~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~s 439 (776)
T KOG0390|consen 388 LKNSD--SLTLKALSSL--------------------------KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISS 439 (776)
T ss_pred ccchh--hHHHHHHHhc--------------------------CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHH
Confidence 64321 1122222222 1235678899961 11211 11111222221100
Q ss_pred ----------------------------------------cccC-----CCCcceEEEEEEcchhhH----HHHHHH---
Q psy6409 966 ----------------------------------------GSVG-----KPTERIEQIVYILSEQDK----RKKLME--- 993 (1832)
Q Consensus 966 ----------------------------------------~~~~-----~~~~~i~q~~~~~~~~~k----~~~L~~--- 993 (1832)
...+ ..+...+ ++.++..... ...++.
T Consensus 440 f~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e-~vv~~n~t~~Q~~~~~~l~~~~~ 518 (776)
T KOG0390|consen 440 FKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYE-YVVFCNPTPIQKELYKKLLDSMK 518 (776)
T ss_pred HHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCcee-EEEEeCCcHHHHHHHHHHHHHHH
Confidence 0000 0111122 2222221100 000110
Q ss_pred -----------H--HHcCCC-----------------------------------------------------CCEEEEE
Q psy6409 994 -----------V--LNRGVK-----------------------------------------------------KPVIIFV 1007 (1832)
Q Consensus 994 -----------~--l~~~~~-----------------------------------------------------~~vIVFv 1007 (1832)
+ |...-. ..+++|+
T Consensus 519 ~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~ 598 (776)
T KOG0390|consen 519 MRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKS 598 (776)
T ss_pred hhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEE
Confidence 0 000000 1244444
Q ss_pred cccch----HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC--c-EEEecccccccCCCcCcCEEEEcCCCCC
Q psy6409 1008 NQKKG----ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK--D-ILVATDVAGRGIDIKDVSMVINYDMAKS 1080 (1832)
Q Consensus 1008 ~s~~~----~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~--~-VLVaTdv~~rGlDip~v~~VI~~d~p~s 1080 (1832)
.-... -+.+.......|+.+..+||.|+..+|+.+++.|.+... . .|.+|-+.+.||++=+.+-||.||...+
T Consensus 599 v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN 678 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN 678 (776)
T ss_pred EEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC
Confidence 43332 222233334459999999999999999999999976433 3 5677889999999999999999999999
Q ss_pred HhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1081 IEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1081 ~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
++.=.|-++||=|.|+.- .++.|++.+
T Consensus 679 Pa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 679 PAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred chhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999999875 455566665
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-10 Score=138.04 Aligned_cols=339 Identities=19% Similarity=0.247 Sum_probs=209.9
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
..+.|+|+..+.-+.. +.--|+--.-|-|||..-+ ..|..| .... .-...+|||||. .|..|+.++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL---~~S~-----k~~~paLIVCP~-Tii~qW~~E 273 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAAL---HHSG-----KLTKPALIVCPA-TIIHQWMKE 273 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHH---hhcc-----cccCceEEEccH-HHHHHHHHH
Confidence 3567999999887763 4457888899999996421 111111 1111 112569999997 466889999
Q ss_pred HHHhcCCCCCeEEEEEcCCch---------HHHHHHH----hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSR---------EEQGFRL----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~---------~~~~~~l----~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
|..+..+ ++|..++|-.+. ......+ ....+|+|+|...+ .. ....+.-..|.|+|+||.|++
T Consensus 274 ~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~-r~-~~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 274 FQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF-RI-QGDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh-cc-cCcccccccccEEEecCcccc
Confidence 9999654 567777664441 0111111 12467999998766 22 222334457899999999985
Q ss_pred hcCC----------------------ChHHHHHH---HHhCC----------------------CCCCCCCCchh-HH--
Q psy6409 892 IDMG----------------------FEPDVQKI---LEYMP----------------------VTNLKPDTEDA-ED-- 921 (1832)
Q Consensus 892 ~d~g----------------------f~~~i~~I---l~~l~----------------------~~~~~~~~~~~-~~-- 921 (1832)
-+.. +...+..+ +.... ..+..+..... ..
T Consensus 350 rNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 350 RNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred cCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 4322 11112222 11111 00000000000 00
Q ss_pred -----------HHHHHHhhc---cccccceEEEEEecCChHHHHHHHHhcC--------------------------CCc
Q psy6409 922 -----------ENKLLANYN---SKKKYRQTVMFTATMPPAVERLARSYLR--------------------------RPA 961 (1832)
Q Consensus 922 -----------~~~ll~~~~---~~~~~~q~v~~SATl~~~v~~~~~~~l~--------------------------~p~ 961 (1832)
+.++-..+. ...+.-++++++-|. .-..+...|+. .|.
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~--~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTK--LQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccH--HHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 111111111 123344666666663 33333333332 121
Q ss_pred EEEEcccCCCCcceEEEE---EEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHH-HcCCcEEEEcCCCC
Q psy6409 962 TVYIGSVGKPTERIEQIV---YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGKG 1035 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~---~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~-~~g~~v~~lhg~~~ 1035 (1832)
.+.-.. ....+.. .......|+..+..++.. ..+.++|+|..++...+.|-.+|. ..||.++-+.|..+
T Consensus 508 ll~~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~ 582 (923)
T KOG0387|consen 508 LLDRRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP 582 (923)
T ss_pred cccCcc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 111100 0111111 122344577777777654 345689999999999999999998 68999999999999
Q ss_pred HHHHHHHHHHHhCCCCc--EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1036 QEQRELALNSLKGGSKD--ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~--VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
...|..+++.|.++..- .|++|-+.+-|+|+-..+-||.||+-.++..=.|-.-||-|.|+. =.++.|++...
T Consensus 583 ~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 583 AALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred cchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99999999999977543 588999999999999999999999999999999999999999876 35667777763
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=144.20 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=79.0
Q ss_pred HHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHhhCCCC-cEEEEcccccccCCCC
Q psy6409 1665 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKGGSK-DILVATDVAGRGIDIK 1742 (1832)
Q Consensus 1665 ~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~-v~~lHg~ls~~~R~~il~~F~~g~~-~VLVATdvl~~GIDip 1742 (1832)
.+..++... ++++|||++|....+.++..|...... ....+|..+ +...++.|+.+.- -++|+|..+++|||+|
T Consensus 470 ~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 344444433 458999999999999999999876543 344455443 4478888876554 8999999999999999
Q ss_pred C--CCEEEEeCCCC------------------------------CHHHHHHHhcccccCCC-ccEEEEE
Q psy6409 1743 D--VSMVINYDMAK------------------------------SIEDYTHRIGRTGRAGK-EGLAVSF 1778 (1832)
Q Consensus 1743 ~--v~~VI~~d~P~------------------------------s~~~yiQRiGRaGR~g~-~G~ai~~ 1778 (1832)
+ +..||...+|- .+..+.|-+||.-|.-+ .|..+++
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 6 46788766653 35567899999999543 3444433
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-09 Score=138.69 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=74.0
Q ss_pred CCCcEEEEECchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhh----CCCCcEEEEcccccccCCCCC--CCE
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLK----GGSKDILVATDVAGRGIDIKD--VSM 1746 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~----~g~~~VLVATdvl~~GIDip~--v~~ 1746 (1832)
..+.+|||++|.+..+.++..|.. .+..+ ..+|. ..+..+++.|+ .|+-.||++|..+.+|||+|+ +.+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 344589999999999999998874 34443 34554 24677887776 467789999999999999996 788
Q ss_pred EEEeCCCC----C--------------------------HHHHHHHhcccccCCCc-cEEEEEeeCC
Q psy6409 1747 VINYDMAK----S--------------------------IEDYTHRIGRTGRAGKE-GLAVSFCTKD 1782 (1832)
Q Consensus 1747 VI~~d~P~----s--------------------------~~~yiQRiGRaGR~g~~-G~ai~~~~~~ 1782 (1832)
||...+|- + +..+.|-+||.=|..+. |. ++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~-i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR-VTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE-EEEEccc
Confidence 98877652 1 22356889999996543 53 4444443
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=140.84 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=61.4
Q ss_pred HHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHh----CCCCcEEEecccccccCC
Q psy6409 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLK----GGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 991 L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il~~F~----~G~~~VLVaTdv~~rGlD 1065 (1832)
+..++. ..+.+|||++|....+.++..|... +.. ...+|.. .+..+++.|+ .|.-.||++|..+.+|||
T Consensus 527 i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 527 LPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 334444 3445899999999999999998743 333 3445542 4677887776 477789999999999999
Q ss_pred CcC--cCEEEEcCCCC
Q psy6409 1066 IKD--VSMVINYDMAK 1079 (1832)
Q Consensus 1066 ip~--v~~VI~~d~p~ 1079 (1832)
+|+ +++||...+|.
T Consensus 601 ~pGd~l~~vII~kLPF 616 (697)
T PRK11747 601 LPGDYLTQVIITKIPF 616 (697)
T ss_pred CCCCceEEEEEEcCCC
Confidence 987 67888877663
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-09 Score=137.72 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=61.4
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
+.|..++|.|.+.+..+. .|.++++-||||+|||++.+.|+|.+....+ ..++++|.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---------ccccEEEEcccchHHHHH
Confidence 467777999999887665 6789999999999999999999998875422 246799999998888888
Q ss_pred HHHHHHh
Q psy6409 1497 EEETNKF 1503 (1832)
Q Consensus 1497 ~~~~~~~ 1503 (1832)
.+++++.
T Consensus 77 i~Elk~~ 83 (705)
T TIGR00604 77 TEELRKL 83 (705)
T ss_pred HHHHHhh
Confidence 8888884
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-09 Score=141.67 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=77.1
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHhCCCC-cEEEecccccccCCC
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKGGSK-DILVATDVAGRGIDI 1066 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~-v~~lhg~~~~~~R~~il~~F~~G~~-~VLVaTdv~~rGlDi 1066 (1832)
..+..++.. .++.+|||++|......+++.|...... ....+|..+ +..+++.|+.+.- -++|+|..+++|||+
T Consensus 469 ~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 334444443 4448999999999999999999876553 445555544 4477888876655 899999999999999
Q ss_pred cCc--CEEEEcCCCC------------------------------CHhHHHHHhcccccCCCC
Q psy6409 1067 KDV--SMVINYDMAK------------------------------SIEDYTHRIGRTGRAGKE 1097 (1832)
Q Consensus 1067 p~v--~~VI~~d~p~------------------------------s~~~yvQr~GRaGR~g~~ 1097 (1832)
|+- ..||..++|- -+..+.|-+||.=|.-.+
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 976 5777766653 344678999999995444
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=137.29 Aligned_cols=109 Identities=25% Similarity=0.323 Sum_probs=100.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC---CCCcEEEecccccccCCCcCcCEEEEc
Q psy6409 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG---GSKDILVATDVAGRGIDIKDVSMVINY 1075 (1832)
Q Consensus 999 ~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~---G~~~VLVaTdv~~rGlDip~v~~VI~~ 1075 (1832)
.+.+||||..-...-+.|+++|...+|+..-+.|++..+.|+.+++.|.. ..+-.|.||-+.+-|||+-..+.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 45789999999999999999999999999999999999999999999975 355689999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1076 DMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1076 d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
|--.++..=+|-..||-|-|+.- .++.|+|.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999774 578899987
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=124.00 Aligned_cols=308 Identities=19% Similarity=0.217 Sum_probs=206.0
Q ss_pred CCcEEEEEccchhHHHHHHHHHHHhcCCC-CCe----EEEEEc--------------CCchHHHHHHHh-----------
Q psy6409 804 QGPYAIIMAPTRELAQQIEEETNKFGTPL-GIR----TVLVVG--------------GLSREEQGFRLR----------- 853 (1832)
Q Consensus 804 ~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~----v~~~~G--------------g~~~~~~~~~l~----------- 853 (1832)
..|+||||+|+|..|.++.+.+-.++... .+. -..-+| .....+....+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46899999999999999988887765431 000 000011 000011111111
Q ss_pred --------------cCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 854 --------------LGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913 (1832)
Q Consensus 854 --------------~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~ 913 (1832)
.++|||||+|=-|-..+.. ....|+.+.++|||.||.|+- .--..+..|+..+...
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QNW~Hv~~v~~~lN~~--- 191 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QNWEHVLHVFEHLNLQ--- 191 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hhHHHHHHHHHHhccC---
Confidence 1489999999888666653 344799999999999997663 3334566666665332
Q ss_pred CCCc-hhHHHHHHHHhh-ccccccceEEEEEecCChHHHHHHHHhcCCCcE-EEE-------cccCCCCcceEEEEEEcc
Q psy6409 914 PDTE-DAEDENKLLANY-NSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYI-------GSVGKPTERIEQIVYILS 983 (1832)
Q Consensus 914 ~~~~-~~~~~~~ll~~~-~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~-v~~-------~~~~~~~~~i~q~~~~~~ 983 (1832)
|... +.+...--...+ ......+|+|+||+...+.+..+....+.+... +.+ +........+.|.+.-+.
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEec
Confidence 3222 222211111222 234567999999999999999888886554322 211 112234455667665432
Q ss_pred -------hhhHHHH----HHHHHH-cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 984 -------EQDKRKK----LMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 984 -------~~~k~~~----L~~~l~-~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
.+.+... ++..+. ....+.+|||+++--+=..+-++|...++..+.+|--.++.+-..+-..|..|+.
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2233332 333333 4556789999999988889999999999999999999999999999999999999
Q ss_pred cEEEeccc--ccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC------CcEEEEEecCCCchHHHHH
Q psy6409 1052 DILVATDV--AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK------EGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1052 ~VLVaTdv--~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~------~G~ai~~~~~~d~~~~~~l 1115 (1832)
+||+-|.= .=+=..|.+|..||-|++|..+.=|-..++-.+.... .+.|.++++.=|...+..|
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999953 3345678889999999999998888777665544332 4799999998886655554
|
; GO: 0005634 nucleus |
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-08 Score=136.35 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=60.3
Q ss_pred cCCCCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
+-|..++|.|.+.+..+. .+.++++.||||+|||++.+.|+|.++... ...++++|.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~---------~~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK---------PEVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc---------cccccEEEEcccchHHHHH
Confidence 457778999998877665 478999999999999999999999876432 1246899999998888888
Q ss_pred HHHHHHh
Q psy6409 822 EEETNKF 828 (1832)
Q Consensus 822 ~~~~~~~ 828 (1832)
.+++++.
T Consensus 77 i~Elk~~ 83 (705)
T TIGR00604 77 TEELRKL 83 (705)
T ss_pred HHHHHhh
Confidence 8888874
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.4e-09 Score=121.36 Aligned_cols=326 Identities=15% Similarity=0.214 Sum_probs=198.9
Q ss_pred CCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+.|+|.+.+..++. |.-+++.-.-|-|||+.++--+-.+.. .. -.||+||.- |-..+.+.+.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra------------Ew-plliVcPAs-vrftWa~al~ 261 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA------------EW-PLLIVCPAS-VRFTWAKALN 261 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh------------cC-cEEEEecHH-HhHHHHHHHH
Confidence 34567999999988775 667999999999999987654443321 23 378999974 4455777888
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
+++....- +..+.++.+.-. .+.....|.|.+.+.+.. + +..+.-..+.+||+||+|+|-+. ...-...++..
T Consensus 262 r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~-l-~~~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dl 334 (689)
T KOG1000|consen 262 RFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSL-L-HDILKKEKYRVVIFDESHMLKDS-KTKRTKAATDL 334 (689)
T ss_pred Hhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHH-H-HHHHhcccceEEEEechhhhhcc-chhhhhhhhhH
Confidence 87554322 445555544211 122235788888887732 2 22334455899999999966542 11112222211
Q ss_pred CCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecC-------------------ChHHHHHHHHhcCC---CcEEE
Q psy6409 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM-------------------PPAVERLARSYLRR---PATVY 964 (1832)
Q Consensus 907 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl-------------------~~~v~~~~~~~l~~---p~~v~ 964 (1832)
+ . ....+|++|.|. -+.-..|+..|... +..+.
T Consensus 335 l-------------------k------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D 389 (689)
T KOG1000|consen 335 L-------------------K------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD 389 (689)
T ss_pred H-------------------H------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee
Confidence 1 0 113456666663 11222333333321 11111
Q ss_pred Ecc------------------------cCCCCcceEEEEEEcch------------------------------------
Q psy6409 965 IGS------------------------VGKPTERIEQIVYILSE------------------------------------ 984 (1832)
Q Consensus 965 ~~~------------------------~~~~~~~i~q~~~~~~~------------------------------------ 984 (1832)
... ....+..-.+.++.+..
T Consensus 390 ykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~t 469 (689)
T KOG1000|consen 390 YKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLT 469 (689)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHh
Confidence 100 00011111122222110
Q ss_pred -hhHHHHHHHHHHc------CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcE-EE
Q psy6409 985 -QDKRKKLMEVLNR------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LV 1055 (1832)
Q Consensus 985 -~~k~~~L~~~l~~------~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G-~~~V-LV 1055 (1832)
..|...+.+.+.. .++.+.+|||+....-+.+...+.+.+++..-+.|..+..+|....+.|... ++.| ++
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvl 549 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVL 549 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEE
Confidence 0122223333332 2456899999999999999999999999999999999999999999999754 3343 45
Q ss_pred ecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc-E-EEEEecCC--CchHHHHHHHHH
Q psy6409 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG-L-AVSFCTKD--DSHLFYDLKQMM 1119 (1832)
Q Consensus 1056 aTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G-~-ai~~~~~~--d~~~~~~l~~~l 1119 (1832)
+..+++.||++.+.++|+...++.++.-.+|-=-|+-|-|+.. . .+.|+.++ |..++..|.+-+
T Consensus 550 sItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 550 SITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred EEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 5678999999999999999999999888888888888877653 3 23344443 555666665544
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-09 Score=133.72 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=92.2
Q ss_pred CCcEEEEECchhHHHHHHHHHHHcC-CcEE--EEcCCCCHHHHHHHHHHhhCC-CCcEEE-EcccccccCCCCCCCEEEE
Q psy6409 1675 KKPVIIFVNQKKGADVLAKGLEKLG-YNAC--TLHGGKGQEQRELALNSLKGG-SKDILV-ATDVAGRGIDIKDVSMVIN 1749 (1832)
Q Consensus 1675 ~~~vIVFv~s~~~a~~l~~~L~~~~-~~v~--~lHg~ls~~~R~~il~~F~~g-~~~VLV-ATdvl~~GIDip~v~~VI~ 1749 (1832)
.+++||||.-+...+.+-+.|-+.- .+|. .+.|..++.+|.++.++|.++ .++||+ +|-|.+.|+|+-+.+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 3579999999999999998886543 3444 578999999999999999998 788876 6789999999999999999
Q ss_pred eCCCCCHHHHHHHhcccccCCCccE--EEEEeeCC
Q psy6409 1750 YDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1782 (1832)
Q Consensus 1750 ~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~ 1782 (1832)
++--+|+-.=+|-+-||-|-|++-+ ++-|++..
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9999988888999999999998754 44557766
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-08 Score=117.91 Aligned_cols=323 Identities=16% Similarity=0.244 Sum_probs=192.6
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il-~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+.|+|.+.+..++ .|.-+++.-.-|-|||+-++-.+-.|... +| .||+||.- |-..+.+.+.+|
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE------------wp-lliVcPAs-vrftWa~al~r~ 263 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE------------WP-LLIVCPAS-VRFTWAKALNRF 263 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc------------Cc-EEEEecHH-HhHHHHHHHHHh
Confidence 56799999887666 56778999999999999764433333322 22 78999963 445677778877
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
.....- +-.+.++...-. .+.....|.|.+-+.+..+- ..+.-..+.+||+||+|+|-+. -......++..+.
T Consensus 264 lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 264 LPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred cccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 543322 333333333211 12223568888877654321 2233445899999999966432 1212222221111
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCC-------------------hHHHHHHHHhcCCC-cEEEEccc
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP-------------------PAVERLARSYLRRP-ATVYIGSV 1643 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~-------------------~~~~~~~~~~l~~p-~~v~i~~~ 1643 (1832)
....++++|.|+. +..-++...|...- ..+.....
T Consensus 337 -------------------------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dyk 391 (689)
T KOG1000|consen 337 -------------------------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYK 391 (689)
T ss_pred -------------------------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecC
Confidence 1123444444431 11112222221100 00000000
Q ss_pred C---------------------------CCCcceEEEEEEc-------------------------------------ch
Q psy6409 1644 G---------------------------KPTERIEQIVYIL-------------------------------------SE 1659 (1832)
Q Consensus 1644 ~---------------------------~~~~~i~q~~~~~-------------------------------------~~ 1659 (1832)
+ .|.. -.+.++.+ ..
T Consensus 392 g~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tg 470 (689)
T KOG1000|consen 392 GCTNLEELAALLFKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTG 470 (689)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhc
Confidence 0 0000 01111111 01
Q ss_pred hhHHHHHHHHHHh------CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC-CCcE-EEE
Q psy6409 1660 QDKRKKLMEVLNR------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LVA 1731 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~------~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g-~~~V-LVA 1731 (1832)
..|...+++.+.. .+..+.+|||....-.+.+-..+...+++..-+.|..++.+|....+.|... ++.| +++
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvls 550 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLS 550 (689)
T ss_pred ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEE
Confidence 1233444555443 2456899999999999999999999999999999999999999999999754 4444 345
Q ss_pred cccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCcc-EEE-EEeeCC--ChhHHHHHHHHh
Q psy6409 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG-LAV-SFCTKD--DSHLFYDLKQMM 1794 (1832)
Q Consensus 1732 Tdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G-~ai-~~~~~~--d~~~~~~l~~~l 1794 (1832)
-.+++.|+++.+.++||...+++++.-++|---|+-|.|+.. +.+ .|+-.. |...+..+.+.+
T Consensus 551 ItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 551 ITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred EeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999988764 333 334443 445555555444
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=131.92 Aligned_cols=95 Identities=11% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH---HH
Q psy6409 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ---GF 1525 (1832)
Q Consensus 1449 TGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~---~~ 1525 (1832)
+|||||.+|+-.+-..+. .|..+|||+|...|+.|+...++..+. +..++.++++.+..+. +.
T Consensus 169 ~GSGKTevyl~~i~~~l~------------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 169 PGEDWARRLAAAAAATLR------------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCCcHHHHHHHHHHHHHH------------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH
Confidence 599999999877765543 377899999999999999999998753 2568888888886643 33
Q ss_pred HhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEccch
Q psy6409 1526 RLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1526 ~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH 1564 (1832)
.+..| +.|||+|-..+ +..+.++++|||||=|
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEh 267 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDG 267 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCC
Confidence 44444 78999995433 3568999999999999
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-08 Score=118.77 Aligned_cols=259 Identities=17% Similarity=0.210 Sum_probs=179.5
Q ss_pred CCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhh
Q psy6409 1530 GCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603 (1832)
Q Consensus 1530 ~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~ 1603 (1832)
++|||||+|=-|-..+.. ..-.|+.+.++|+|.||.|+-.++ +.+..|+..+.......... +........-
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~~~~~-DfsRVR~w~L 208 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKKSHDT-DFSRVRPWYL 208 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCCCCCC-CHHHHHHHHH
Confidence 479999999888776653 334689999999999997775553 45666666665433222221 1111111222
Q ss_pred hccccCcceEEEEEccCChHHHHHHHHhcCCCc-EEEEcc-------cCCCCcceEEEEEEcch-------hhHHHHHHH
Q psy6409 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPA-TVYIGS-------VGKPTERIEQIVYILSE-------QDKRKKLME 1668 (1832)
Q Consensus 1604 ~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~-~v~i~~-------~~~~~~~i~q~~~~~~~-------~~k~~~l~~ 1668 (1832)
-......+|+|++|+...+.+..+....+.+.. .+.+.. .......+.|.+.-.+. ..+...+..
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 223456789999999999999988887554432 122211 12233455666554321 223333322
Q ss_pred ----HHH-hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc--cccCCC
Q psy6409 1669 ----VLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA--GRGIDI 1741 (1832)
Q Consensus 1669 ----~l~-~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl--~~GIDi 1741 (1832)
.+. ....+.+|||++|--.--.|-++|...++..+.+|--.++.+-..+-..|.+|+.+||+-|.=+ =+=..|
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 223 4456789999999999999999999999999999999999999999999999999999999643 345678
Q ss_pred CCCCEEEEeCCCCCHHHHHHHhcccccCC------CccEEEEEeeCCChhHHHHH
Q psy6409 1742 KDVSMVINYDMAKSIEDYTHRIGRTGRAG------KEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1742 p~v~~VI~~d~P~s~~~yiQRiGRaGR~g------~~G~ai~~~~~~d~~~~~~l 1790 (1832)
.++..||.|.+|..+.=|-..++-.+... ..+.|.++++.-|.-.+..+
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 88999999999999887777775554433 25789999998887666554
|
; GO: 0005634 nucleus |
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=125.39 Aligned_cols=346 Identities=18% Similarity=0.260 Sum_probs=209.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
++-+||.-.+.|+. .+-+.|+.-.-|-|||.- +++.|.++.+. ..+|| -|||||.-.| .-|.+++
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~--------g~~gp-HLVVvPsSTl-eNWlrEf 467 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI--------GNPGP-HLVVVPSSTL-ENWLREF 467 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc--------CCCCC-cEEEecchhH-HHHHHHH
Confidence 48899999998875 455779999999999975 45555555442 12344 6888998776 4577888
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHH-Hhh---cCCcEEEeCHHHHHHHH-HccccccCCceeEEEccchhhhcCC-----
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGF-RLR---LGCEIVIATPGRLIDVL-ENRYLVLNQCTYIVLDEADRMIDMG----- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~-~l~---~~~~IiVaTP~rl~~~l-~~~~~~l~~v~llViDEaH~ll~~g----- 1570 (1832)
.+||.. ++|..++|......+.. .+. .+.+|+|+|......-- .+..+.-.+++++|+||+|.|-+..
T Consensus 468 ~kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 468 AKWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 888854 57788888775444322 222 25899999976443111 1223455678999999999643321
Q ss_pred -----------------ChHHHHHHHHhC----CCCC------------CCCCC----chh-------hhHHH-----HH
Q psy6409 1571 -----------------FEPDVQKILEYM----PVTN------------LKPDT----EDA-------EDENK-----LL 1601 (1832)
Q Consensus 1571 -----------------f~~~l~~Il~~l----~~~~------------~~~~~----~~~-------~~~~~-----l~ 1601 (1832)
....+..+++.+ |... .+..+ +.. ..+.. ++
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 111122222211 1000 00100 000 00000 11
Q ss_pred hh-----hccccCc---ceEEEEEccCChHHHHHHHHhc-----------------------------------------
Q psy6409 1602 AN-----YNSKKKY---RQTVMFTATMPPAVERLARSYL----------------------------------------- 1632 (1832)
Q Consensus 1602 ~~-----~~~~~~~---~q~v~~SATl~~~~~~~~~~~l----------------------------------------- 1632 (1832)
++ +....+. .+.+.||.+--.....++..+.
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 11 1112222 3344455553333333333331
Q ss_pred -------CCCcEEEEccc------C-------------CC-CcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEEC
Q psy6409 1633 -------RRPATVYIGSV------G-------------KP-TERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVN 1683 (1832)
Q Consensus 1633 -------~~p~~v~i~~~------~-------------~~-~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~ 1683 (1832)
+.|........ . .+ .....-.-.......|...|..+|... .+.+||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 11111000000 0 00 000000000112345666777777654 4579999999
Q ss_pred chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC-Cc-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS-KD-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~-~~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
--...+-|-..|..+++.-.-+.|...-.+|+.+++.|-..+ +. .|.+|-+.+-|||+-..++||.||+..++-+=.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 888888888899999999999999999999999999997544 33 5779999999999999999999999888888888
Q ss_pred HhcccccCCCc--cEEEEEeeCCC
Q psy6409 1762 RIGRTGRAGKE--GLAVSFCTKDD 1783 (1832)
Q Consensus 1762 RiGRaGR~g~~--G~ai~~~~~~d 1783 (1832)
---||-|.|+. =.++.|++.+.
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecCc
Confidence 88888888865 56667788874
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=132.04 Aligned_cols=337 Identities=22% Similarity=0.270 Sum_probs=204.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCC
Q psy6409 754 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPL 832 (1832)
Q Consensus 754 iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~ 832 (1832)
+-+..+.++..++-+++-+.||+|||.-+.--||..+.+.. ......+.+-.|+|--|..+++.+. ..+...
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-------~g~~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-------NGASFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-------ccccccceeccccccchHHHHHHHHHhhHHhh
Confidence 34455666667788999999999999999998988775532 2334568888899998888877664 333333
Q ss_pred CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCC-
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN- 911 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~- 911 (1832)
+-.|+. ..+... ..-..--.|..+|-|-++.++... +..+.++|+||.|.. +.. ...+..|++-+-.+.
T Consensus 455 g~tvgy----~vRf~S-a~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher-dv~-~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 455 GETCGY----NVRFDS-ATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER-DVD-TDFVLIVLREMISTYR 524 (1282)
T ss_pred cccccc----cccccc-cccccccceeeeccchhhhhhhhc---ccccccccchhhhhh-ccc-hHHHHHHHHhhhccch
Confidence 332222 111111 011123468899999999888774 556788999999943 211 111222222221110
Q ss_pred -----CCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCC------------Ccc
Q psy6409 912 -----LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP------------TER 974 (1832)
Q Consensus 912 -----~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~------------~~~ 974 (1832)
+...+.+++.....++. -.++.+.++|+| +..|...+...+.....+..... ...
T Consensus 525 dl~v~lmsatIdTd~f~~~f~~------~p~~~~~grt~p--vq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~dd 596 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTDLFTNFFSS------IPDVTVHGRTFP--VQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDD 596 (1282)
T ss_pred hhhhhhhhcccchhhhhhhhcc------ccceeecccccc--HHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhh
Confidence 01112222222222222 245677777776 33344443333332222211100 000
Q ss_pred eEE----------------EEEEcchhhHHHHHHHHH-----HcCCCCCEEEEEcccchHHHHHHHHHHc-------CCc
Q psy6409 975 IEQ----------------IVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKL-------GYN 1026 (1832)
Q Consensus 975 i~q----------------~~~~~~~~~k~~~L~~~l-----~~~~~~~vIVFv~s~~~~~~l~~~L~~~-------g~~ 1026 (1832)
-.. ......+......|.+.+ ...-.+-++||...-...-.|+..|... .+.
T Consensus 597 K~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ 676 (1282)
T KOG0921|consen 597 KGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE 676 (1282)
T ss_pred cccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc
Confidence 000 000011111112222222 2234567999999999988888888544 467
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------------------CCHhHHHHHh
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------------------KSIEDYTHRI 1088 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------------------~s~~~yvQr~ 1088 (1832)
+...|+.++..++.++++....|..++++.|++++..+.|.++.+||+.+.. .|....+||.
T Consensus 677 ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 677 ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred cccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 8999999999999999999999999999999999999999998888865542 1566789999
Q ss_pred cccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1089 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||+||.- .|.|+.+++.- .+..+.++.
T Consensus 757 gr~grvR-~G~~f~lcs~a---rF~~l~~~~ 783 (1282)
T KOG0921|consen 757 GRAGRVR-PGFCFHLCSRA---RFEALEDHG 783 (1282)
T ss_pred ccCceec-ccccccccHHH---HHHHHHhcC
Confidence 9999964 58888887753 344444443
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=122.96 Aligned_cols=124 Identities=25% Similarity=0.307 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC-C-cEEEecccc
Q psy6409 985 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS-K-DILVATDVA 1060 (1832)
Q Consensus 985 ~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~-~-~VLVaTdv~ 1060 (1832)
..|...|..+|... .+.+||||..--..-+.|-..|..+++...-+.|...-..|+.+++.|-..+ + -.|.+|-+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 35666666666542 4578999999888888899999999999999999999999999999997543 3 358999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
+-|||+-..++||.||+-.++-+=.|---||-|.|+. =+++.|++.+.
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 9999999999999999988888778888888888765 57788888874
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-08 Score=124.09 Aligned_cols=292 Identities=16% Similarity=0.201 Sum_probs=174.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
.++.||.|||||.+..-++-..+. ....++|+|+..+.|+.++...++..+.. |+....-.++.....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG 119 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc
Confidence 578899999999875443322211 24678999999999999999999875321 222111111111110
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHh
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~ 1602 (1832)
...+-+++..+.|..+. ...+.++++|||||+--.+..-|.+.++..-..+ .++.
T Consensus 120 ------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~----------------~~L~ 174 (824)
T PF02399_consen 120 ------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVD----------------NLLK 174 (824)
T ss_pred ------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHH----------------HHHH
Confidence 12466777766665443 2246779999999998766554433333211100 0111
Q ss_pred hhccccCcceEEEEEccCChHHHHHHHHhcCC-CcEEEEcccCCCCcceEEEE---------------------------
Q psy6409 1603 NYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV--------------------------- 1654 (1832)
Q Consensus 1603 ~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~-p~~v~i~~~~~~~~~i~q~~--------------------------- 1654 (1832)
. -......+|++-|++....-+++..+..+ +..+.++....+.-.-.+-+
T Consensus 175 ~--lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 252 (824)
T PF02399_consen 175 E--LIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTP 252 (824)
T ss_pred H--HHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCc
Confidence 0 01234578999999999988888876543 23333322111100000000
Q ss_pred -----------EEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1655 -----------YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1655 -----------~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
.......-...|..-|. .++++-||++|..-++.+++.....+..+..++|.-...+ + +. =
T Consensus 253 ~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W 324 (824)
T PF02399_consen 253 KHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--W 324 (824)
T ss_pred CCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--c
Confidence 00000111112222222 4567889999999999999999888889998888665552 2 22 3
Q ss_pred CCCcEEEEcccccccCCCCCC--CEEEEe--CC--CCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDV--SMVINY--DM--AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v--~~VI~~--d~--P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
++++|+|=|+++..|+++.+. +-|+-| .+ ..+..+..|++||+-.- .....++++...
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 678999999999999998654 344444 22 24677899999999444 356666666654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=121.00 Aligned_cols=292 Identities=15% Similarity=0.196 Sum_probs=176.2
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
.+|-||.|||||.+..-++-..+ ..++.++|+|+.++.|+.+....|+..+-. |+....-.++.....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l-----------~~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDAL-----------KNPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG 119 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhc-----------cCCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc
Confidence 78899999999987544433221 135778999999999999999999875321 222221111111110
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~ 927 (1832)
...+-+++..+.|..+- ...+.++++|||||+-..+..=|.+.++..- ....++.
T Consensus 120 ------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~----------------~v~~~L~ 174 (824)
T PF02399_consen 120 ------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQRE----------------EVDNLLK 174 (824)
T ss_pred ------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHH----------------HHHHHHH
Confidence 12456677766664432 2257789999999999766543333322211 1111222
Q ss_pred hhccccccceEEEEEecCChHHHHHHHHhcCC-CcEEEEcccCCCCcceEE-----------------------------
Q psy6409 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQ----------------------------- 977 (1832)
Q Consensus 928 ~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~-p~~v~~~~~~~~~~~i~q----------------------------- 977 (1832)
.+.. ....+|++-||+....-+|...+..+ ++.+.++....+.-.-.+
T Consensus 175 ~lI~--~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 252 (824)
T PF02399_consen 175 ELIR--NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTP 252 (824)
T ss_pred HHHH--hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCc
Confidence 2221 23578999999999888888886543 333333321110000000
Q ss_pred ---------EEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 978 ---------IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 978 ---------~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
.........-...|..-|. .+..+-||+.|...++.+++.....+..+..++|..+..+- +. =
T Consensus 253 ~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W 324 (824)
T PF02399_consen 253 KHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--W 324 (824)
T ss_pred CCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--c
Confidence 0001111112223333333 45668899999999999999999889999999887666522 22 3
Q ss_pred CCCcEEEecccccccCCCcCcC--EEEEc--CCC--CCHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVS--MVINY--DMA--KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~--~VI~~--d~p--~s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
++++|+|=|.+...|+++.... -|.-| ... .+..+..|++||.-.-. ..+.++++...
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 6789999999999999996543 23322 111 26667899999996554 35666665554
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=117.60 Aligned_cols=366 Identities=17% Similarity=0.193 Sum_probs=230.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecC-CChH--HHHHHHHHHHHHhhchh-----hhhcc--------------ccCC
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAET-GSGK--TLAFLLPLLVWIQSLPK-----IARME--------------DADQ 804 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apT-GSGK--Tla~llpil~~i~~~~~-----~~~~~--------------~~~~ 804 (1832)
.-..+|+.|.+.+..+.+-+|++..-.| |.|+ +-+|.|-+|+++.+... ..+.. ..-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3467899999999999999997653222 3455 66789999988754211 11100 0113
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCC---------eEEEEEcC----------------------Cc--------h
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGI---------RTVLVVGG----------------------LS--------R 845 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i---------~v~~~~Gg----------------------~~--------~ 845 (1832)
.|+||||||+|+-|..+...+..++....- +...-++| .+ .
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999888876332211 01111222 00 0
Q ss_pred HHHHHHHh---cCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCC
Q psy6409 846 EEQGFRLR---LGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDT 916 (1832)
Q Consensus 846 ~~~~~~l~---~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~ 916 (1832)
......|. ...+||||+|=-|--++.+ ..-.|+.+.++|||-||-|+..++ ..+..|+..+.. .|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~---~P~k 448 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNL---QPSK 448 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhc---Cccc
Confidence 01111111 2489999999887555542 223688999999999998876544 455666666643 2332
Q ss_pred chhHHHHH--HHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc-------ccCCCCcceEEEEEE--c---
Q psy6409 917 EDAEDENK--LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG-------SVGKPTERIEQIVYI--L--- 982 (1832)
Q Consensus 917 ~~~~~~~~--ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~-------~~~~~~~~i~q~~~~--~--- 982 (1832)
.+.....+ +...-.+.+-++|+++||+-..+....+...++.+-...... ........+.|.+.- +
T Consensus 449 ~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 449 QHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred ccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 22221111 111222344578999999998888877777776543222111 111111222222211 1
Q ss_pred --chhhHHHHHHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEe
Q psy6409 983 --SEQDKRKKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056 (1832)
Q Consensus 983 --~~~~k~~~L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVa 1056 (1832)
..+.++.....-+.- ....-+||++++--.-..+-.++.+.++..+.+|--.++..-..+-+.|-.|...||+-
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLy 608 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLY 608 (698)
T ss_pred ccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEE
Confidence 123344433332221 22335799999998888999999998888888887666666677778899999999999
Q ss_pred ccc--ccccCCCcCcCEEEEcCCCCCHhHH---HHHhcccccCC----CCcEEEEEecCCCchHHHHHH
Q psy6409 1057 TDV--AGRGIDIKDVSMVINYDMAKSIEDY---THRIGRTGRAG----KEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1057 Tdv--~~rGlDip~v~~VI~~d~p~s~~~y---vQr~GRaGR~g----~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
|.= .=+--+|.+|.-||.|.+|..+.=| +.++||+.--| ..-.|.+++++-|..-+..+.
T Consensus 609 TER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 609 TERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred ehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 964 3466889999999999999987654 56777765433 225788999988866665554
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=122.11 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHcC----------------CCCCEEEEEcccchHHHHHHHHHHcCC-cEE--EEcCCCCHHHHHHHHH
Q psy6409 984 EQDKRKKLMEVLNRG----------------VKKPVIIFVNQKKGADVLAKGLEKLGY-NAC--TLHGGKGQEQRELALN 1044 (1832)
Q Consensus 984 ~~~k~~~L~~~l~~~----------------~~~~vIVFv~s~~~~~~l~~~L~~~g~-~v~--~lhg~~~~~~R~~il~ 1044 (1832)
...|+.+|.++|..+ .+.++||||.-+...+.+.+.|-+... .+. .+.|..++.+|.++.+
T Consensus 1308 hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~ 1387 (1549)
T KOG0392|consen 1308 HSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVE 1387 (1549)
T ss_pred hchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHH
Confidence 345778888887643 234799999999999999888865533 333 5889999999999999
Q ss_pred HHhCC-CCcEE-EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1045 SLKGG-SKDIL-VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1045 ~F~~G-~~~VL-VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
+|.++ .++|| .+|-|.+-|+|+-+.+.||.++=-.++-.=+|-+-||-|-|++- .++.|++..
T Consensus 1388 ~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1388 RFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 99998 88876 56689999999999999998888888888899999999999863 467777776
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-07 Score=107.41 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=110.4
Q ss_pred hHHHHHHHHHH----cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcE-EEeccc
Q psy6409 986 DKRKKLMEVLN----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LVATDV 1059 (1832)
Q Consensus 986 ~k~~~L~~~l~----~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G-~~~V-LVaTdv 1059 (1832)
.|++.|.+-|. ....-+.|||..--.-.+.+.-.|.+.|+.++-+-|+|+...|..+++.|++. .+.| ||+--+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 45556655432 22334789998888888888888999999999999999999999999999875 4444 566677
Q ss_pred ccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC--CcEEEEEecCCC--chHHHHHHHHHhcCCcccccccccccc
Q psy6409 1060 AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDD--SHLFYDLKQMMISSPVTGRAGKEGLAV 1135 (1832)
Q Consensus 1060 ~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d--~~~~~~l~~~l~~~~~~~~~~~~~~~v 1135 (1832)
.+..+|+-..++|+.+|+-.+++--.|-..|.-|-|+ +=.++.|+-++. ...+.--++ .+..+.++++..++|+
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK--Ka~mihaTi~qde~Ai 777 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK--KANMIHATIGQDEEAI 777 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH--HhhhhhhhcCCcHHHH
Confidence 7888999999999999998887766665555555553 357788888763 222222111 2334567777777777
Q ss_pred cccccCC
Q psy6409 1136 SFCTKDD 1142 (1832)
Q Consensus 1136 ~~~~~~~ 1142 (1832)
.-++..|
T Consensus 778 ~kLt~eD 784 (791)
T KOG1002|consen 778 SKLTEED 784 (791)
T ss_pred HhcCHHH
Confidence 6554433
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=118.99 Aligned_cols=77 Identities=30% Similarity=0.328 Sum_probs=62.9
Q ss_pred ccCCCCChhhhh----hcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHH
Q psy6409 5 IGYAEPTPIQRQ----AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 80 (1832)
Q Consensus 5 ~~~~~~~p~Q~~----~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi 80 (1832)
|+|. |+|.|.+ ++..+..|..+++.||||+|||+|||+|+|.++...+.. ..+...+|.++|..+..|.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------IQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc------ccccceeEEeccHHHHHHH
Confidence 8888 5999999 566788999999999999999999999999776543211 1235789999999999998
Q ss_pred HHHHHhcC
Q psy6409 81 EEETNKFG 88 (1832)
Q Consensus 81 ~~~~~~~~ 88 (1832)
..++++..
T Consensus 78 i~~l~~~~ 85 (289)
T smart00488 78 LEELRKLM 85 (289)
T ss_pred HHHHHhcc
Confidence 88887764
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=118.99 Aligned_cols=77 Identities=30% Similarity=0.328 Sum_probs=62.9
Q ss_pred ccCCCCChhhhh----hcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHH
Q psy6409 5 IGYAEPTPIQRQ----AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 80 (1832)
Q Consensus 5 ~~~~~~~p~Q~~----~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi 80 (1832)
|+|. |+|.|.+ ++..+..|..+++.||||+|||+|||+|+|.++...+.. ..+...+|.++|..+..|.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------IQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc------ccccceeEEeccHHHHHHH
Confidence 8888 5999999 566788999999999999999999999999776543211 1235789999999999998
Q ss_pred HHHHHhcC
Q psy6409 81 EEETNKFG 88 (1832)
Q Consensus 81 ~~~~~~~~ 88 (1832)
..++++..
T Consensus 78 i~~l~~~~ 85 (289)
T smart00489 78 LEELRKLM 85 (289)
T ss_pred HHHHHhcc
Confidence 88887764
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-08 Score=114.89 Aligned_cols=75 Identities=31% Similarity=0.373 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHH----HHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 747 GYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~----~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
.|. |+|.|.+.+. .+..|.++|+.||||+|||+++++|++.++...+. ...+.+++|.++|..+..|..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHH
Confidence 454 6999999544 45568899999999999999999999987643211 013458999999999999987
Q ss_pred HHHHHh
Q psy6409 823 EETNKF 828 (1832)
Q Consensus 823 ~~~~~~ 828 (1832)
..+++.
T Consensus 79 ~~l~~~ 84 (289)
T smart00488 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 777765
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-08 Score=114.89 Aligned_cols=75 Identities=31% Similarity=0.373 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHH----HHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 747 GYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~----~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
.|. |+|.|.+.+. .+..|.++|+.||||+|||+++++|++.++...+. ...+.+++|.++|..+..|..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHH
Confidence 454 6999999544 45568899999999999999999999987643211 013458999999999999987
Q ss_pred HHHHHh
Q psy6409 823 EETNKF 828 (1832)
Q Consensus 823 ~~~~~~ 828 (1832)
..+++.
T Consensus 79 ~~l~~~ 84 (289)
T smart00489 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 777765
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=104.37 Aligned_cols=138 Identities=19% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
|+-.++-..+|+|||.-.+--++... ...+.++|||+|||.+|..+.+.++.. ++++....-+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~-----------i~~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREA-----------IKRRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHH-----------HHTT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS--
T ss_pred CceeEEecCCCCCCcccccHHHHHHH-----------HHccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec-
Confidence 44467889999999986444343321 135789999999999999988887653 33322111100
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHH
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK 924 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ 924 (1832)
....+.-|-|+|.+.+...+.+ ...+.++++||+||||.+ |. ..| ...+
T Consensus 68 ------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp------~sI-----------------A~rg 116 (148)
T PF07652_consen 68 ------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DP------TSI-----------------AARG 116 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SH------HHH-----------------HHHH
T ss_pred ------cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CH------HHH-----------------hhhe
Confidence 1123466789999999888777 446789999999999942 21 111 1122
Q ss_pred HHHhhccccccceEEEEEecCChHHH
Q psy6409 925 LLANYNSKKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 925 ll~~~~~~~~~~q~v~~SATl~~~v~ 950 (1832)
.+...... ....+|++|||.|....
T Consensus 117 ~l~~~~~~-g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 117 YLRELAES-GEAKVIFMTATPPGSED 141 (148)
T ss_dssp HHHHHHHT-TS-EEEEEESS-TT---
T ss_pred eHHHhhhc-cCeeEEEEeCCCCCCCC
Confidence 23333222 23568999999987654
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-07 Score=111.16 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=82.3
Q ss_pred cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhh--CCCCcEEE-EcccccccCCCCCCCEEEEeCCC
Q psy6409 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK--GGSKDILV-ATDVAGRGIDIKDVSMVINYDMA 1753 (1832)
Q Consensus 1677 ~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~--~g~~~VLV-ATdvl~~GIDip~v~~VI~~d~P 1753 (1832)
+++|...-......+...|...|+....+||.....+|..+++.|. +|..+|++ +=...+.|+|+-..+|+|..|+-
T Consensus 748 K~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH 827 (901)
T KOG4439|consen 748 KVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH 827 (901)
T ss_pred eeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc
Confidence 4444443344445566778888999999999999999999999995 45566654 55677899999999999999999
Q ss_pred CCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1754 KSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1754 ~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
+++.-=-|-.-|.-|.|++-.++++
T Consensus 828 WNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 828 WNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999987666554
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-07 Score=104.62 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=97.0
Q ss_pred hHHHHHHHHHH----hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC-CCcE-EEEccc
Q psy6409 1661 DKRKKLMEVLN----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LVATDV 1734 (1832)
Q Consensus 1661 ~k~~~l~~~l~----~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g-~~~V-LVATdv 1734 (1832)
.|.++|.+-+. ....-+.|||..--.-.+.+.-.|.+.|+++.-+-|+|++..|...++.|++. .+.| ||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34555554332 22345789998888888888888999999999999999999999999999865 4444 455667
Q ss_pred ccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC--ccEEEEEeeCCC
Q psy6409 1735 AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDD 1783 (1832)
Q Consensus 1735 l~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~d 1783 (1832)
.+..+|+-..+.|+++|+=++++--.|-.-|.-|.|+ +=.++.|+-+..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 7777899999999999998898888888788877764 567888888763
|
|
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-07 Score=108.29 Aligned_cols=365 Identities=18% Similarity=0.205 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCC-CchH--HHHHHHHHHHHHhhCch-----hhcc--------------cccCCCc
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAET-GSGK--TLAFLLPLLVWIQSLPK-----IARM--------------EDADQGP 1481 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApT-GSGK--Tla~~lpil~~l~~~p~-----~~~~--------------~~~~~~~ 1481 (1832)
..+|+.|.+.+..+.+-+|++..-.| +.|+ +-+|++-+|+++..... ..+. ...-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999998998654222 3455 56788888887653211 0110 0012358
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC--CCeEE-------EEECC----------------------cch--------HH
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPL--GIRTV-------LVVGG----------------------LSR--------EE 1522 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~--g~~v~-------~l~gg----------------------~~~--------~~ 1522 (1832)
+||||||+|+-|..+...+..+.... |...+ .-++| ... ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 99999999999999988887762211 11001 01111 000 00
Q ss_pred HHHHh---hcCCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCch
Q psy6409 1523 QGFRL---RLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 1593 (1832)
Q Consensus 1523 ~~~~l---~~~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~ 1593 (1832)
....| ....|||||+|=-|--++.+ ..-.++.+.++|||-||.|+..++ ..+..|++.+..........+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 00111 22589999999777666652 223588999999999998886654 345566666653332211111
Q ss_pred hhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE-EEEcc------cCCCCcceEEEEE---Ec----ch
Q psy6409 1594 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGS------VGKPTERIEQIVY---IL----SE 1659 (1832)
Q Consensus 1594 ~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~-v~i~~------~~~~~~~i~q~~~---~~----~~ 1659 (1832)
-.....+..-.+.+-.+|+++||+--.+....+...++.+-.. +.... .......+.|.+. .- ..
T Consensus 454 -fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 454 -FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred -hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 0111111112233456799999998888777777666654221 11111 1111111222211 11 12
Q ss_pred hhHHHHHHHHHHhC----CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc
Q psy6409 1660 QDKRKKLMEVLNRG----VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~----~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl 1735 (1832)
..+...+...+--. ...-+||+++|--.--.+-.+|....+.-..+|--.+...-..+-+.|-.|..+||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 33444444433222 23347999999888888889998887776667665556666677788999999999999654
Q ss_pred --cccCCCCCCCEEEEeCCCCCHH---HHHHHhcccccCC----CccEEEEEeeCCChhHHHHH
Q psy6409 1736 --GRGIDIKDVSMVINYDMAKSIE---DYTHRIGRTGRAG----KEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1736 --~~GIDip~v~~VI~~d~P~s~~---~yiQRiGRaGR~g----~~G~ai~~~~~~d~~~~~~l 1790 (1832)
=+-.+|.+|..||.|.+|.++. +++.|+||+.--| ....|.++++.-|.--+..+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 4668999999999999999865 5578888875433 34678888888776554443
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=112.49 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHh--CCCCcE-EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcc
Q psy6409 1014 DVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK--GGSKDI-LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090 (1832)
Q Consensus 1014 ~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~--~G~~~V-LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GR 1090 (1832)
..+...|...|+....+||.....+|..+++.|. .|..+| |++-...+.|||+-+.+|+|..|+-.++.-=.|-.-|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 4455667778999999999999999999999995 344444 5666788999999999999999999999998999999
Q ss_pred cccCCCCcEEE
Q psy6409 1091 TGRAGKEGLAV 1101 (1832)
Q Consensus 1091 aGR~g~~G~ai 1101 (1832)
.-|.|+.-.++
T Consensus 840 IYR~GQkK~V~ 850 (901)
T KOG4439|consen 840 IYRMGQKKDVF 850 (901)
T ss_pred HHHhcccCceE
Confidence 99998764433
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.6e-07 Score=114.23 Aligned_cols=338 Identities=23% Similarity=0.279 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|..+|.-.- +.-...-|.-+-||=|||+++.+|+...- -.|..+.++...--||.--+.+...+.
T Consensus 80 ~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylna------------L~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 80 RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNA------------LAGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHh------------cCCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 3444554443 33334468899999999999999996432 235567888888889988888888888
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHcc------ccccCCceeEEEecchhhh-cC-------
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENR------YLVLNQCTYIVLDEADRMI-DM------- 894 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~------~~~l~~~~~lViDEaH~l~-d~------- 894 (1832)
..+|+.+++...+++..+..... .|+|.++|-..|= |.+.-. ........|.|+||+|-++ |.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 88999999999999876664443 5999999976652 222211 1134467899999999643 11
Q ss_pred -C---C----hHHHHHHHHhCCCCC-C---------------------------CCCCch--------------------
Q psy6409 895 -G---F----EPDVQKILEYMPVTN-L---------------------------KPDTED-------------------- 918 (1832)
Q Consensus 895 -g---f----~~~i~~Il~~l~~~~-~---------------------------~~~~~~-------------------- 918 (1832)
| . ...+..++..+.... . ..+..+
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D 303 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRD 303 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcC
Confidence 1 1 112222222111000 0 000000
Q ss_pred --------------------------hH-HHHHHHHhhc-cccc----------------cceEEEEEecCChHHHHHHH
Q psy6409 919 --------------------------AE-DENKLLANYN-SKKK----------------YRQTVMFTATMPPAVERLAR 954 (1832)
Q Consensus 919 --------------------------~~-~~~~ll~~~~-~~~~----------------~~q~v~~SATl~~~v~~~~~ 954 (1832)
.+ ..+.+.+.-. .-.+ +..+.+++.|.-.....|..
T Consensus 304 ~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~ 383 (822)
T COG0653 304 VDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV 383 (822)
T ss_pred CeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh
Confidence 00 0000110000 0011 12334455554444444444
Q ss_pred HhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEc
Q psy6409 955 SYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lh 1031 (1832)
.|..+ +.+.+...+...+... ..+.....|...+++-+.. ..+.|+||-+.+.+..+.+++.|.+.|++..++.
T Consensus 384 iY~l~---vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLN 460 (822)
T COG0653 384 IYGLD---VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLN 460 (822)
T ss_pred ccCCc---eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeec
Confidence 44332 2222223333222221 2334556677666665543 3678999999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC-----------EEEEcCCCCCHhHHHHHhcccccCCCCcEE
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS-----------MVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~-----------~VI~~d~p~s~~~yvQr~GRaGR~g~~G~a 1100 (1832)
+.-...+=+.+-..-+.| -|-|||+.|+||-||---. +||--.--.|..-=.|-.||+||-|-+|.+
T Consensus 461 Ak~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 461 AKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 876644444444433344 4789999999999984222 344333233444445999999999988887
Q ss_pred EEEecCCC
Q psy6409 1101 VSFCTKDD 1108 (1832)
Q Consensus 1101 i~~~~~~d 1108 (1832)
-.|++-+|
T Consensus 539 ~F~lSleD 546 (822)
T COG0653 539 RFYLSLED 546 (822)
T ss_pred hhhhhhHH
Confidence 77666554
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.6e-07 Score=114.65 Aligned_cols=341 Identities=22% Similarity=0.274 Sum_probs=205.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|+ .|.. .|.+-.+.-...-|.-+.||-|||+++.+|+.... -.|..|.++.-.-=||.--..++
T Consensus 77 lg~-~~~d--VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylna------------L~gkgVhvVTvNdYLA~RDae~m 141 (822)
T COG0653 77 LGM-RHFD--VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNA------------LAGKGVHVVTVNDYLARRDAEWM 141 (822)
T ss_pred cCC-Chhh--HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHh------------cCCCCcEEeeehHHhhhhCHHHH
Confidence 344 3444 44455555556678999999999999999996322 23666888888888999888899
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhhcC----
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMIDM---- 1569 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll~~---- 1569 (1832)
..+...+|+.+.++..+.++.+..... .|||..+|-..|- +.++.+. .......+.|+||+|-++=.
T Consensus 142 ~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 142 GPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred HHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 999889999999999998877654443 4899999987662 3333221 23446889999999964310
Q ss_pred -----C---C----hHHHHHHHHhCCCCC-CC---------------------------CCCchhh--------------
Q psy6409 1570 -----G---F----EPDVQKILEYMPVTN-LK---------------------------PDTEDAE-------------- 1595 (1832)
Q Consensus 1570 -----g---f----~~~l~~Il~~l~~~~-~~---------------------------~~~~~~~-------------- 1595 (1832)
| . +..+..++..+.... +. ...+...
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 1 1 122222222111100 00 0000000
Q ss_pred --------------------------------h-HHHHHhhhc-c----------------ccCcceEEEEEccCChHHH
Q psy6409 1596 --------------------------------D-ENKLLANYN-S----------------KKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1596 --------------------------------~-~~~l~~~~~-~----------------~~~~~q~v~~SATl~~~~~ 1625 (1832)
. -+.+.+.-. . .+-+..+.++|.|.-....
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 0 000000000 0 0111223345555555545
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
.+...|..+.. +.+...+...+... ..+.....|..+++.-+.. ..+.|+||-+.++...+.+...|.+.|++.
T Consensus 380 EF~~iY~l~vv---~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 380 EFDVIYGLDVV---VIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred hhhhccCCcee---eccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 55544443322 22333333332222 2233455666666555443 367899999999999999999999999998
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCC-----------EEEEeCCCCCHHHHHHHhcccccCCC
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS-----------MVINYDMAKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~-----------~VI~~d~P~s~~~yiQRiGRaGR~g~ 1771 (1832)
.++.+.-...+-+.+-+.-+.| -|-|||+.++||-||---. +||-..--.|-.-=-|-.||+||-|.
T Consensus 457 ~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 8888776655555554444444 3789999999999985222 33333222233333488999999999
Q ss_pred ccEEEEEeeCCC
Q psy6409 1772 EGLAVSFCTKDD 1783 (1832)
Q Consensus 1772 ~G~ai~~~~~~d 1783 (1832)
.|.+..|++-+|
T Consensus 535 pG~S~F~lSleD 546 (822)
T COG0653 535 PGSSRFYLSLED 546 (822)
T ss_pred cchhhhhhhhHH
Confidence 999988877654
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=109.92 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=80.1
Q ss_pred HHHHHHHHHh-------------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1429 IQRQAIPIGL-------------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1429 iQ~~ai~~il-------------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
+|.+++.+++ ..+..|++..+|+|||+..+..+. ++.... .......+|||||. .+..|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~ 72 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQ 72 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhh
Confidence 5888887764 235789999999999998765554 332211 01112359999999 88899
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHH---ccccccCCceeEEEccchhhh
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~---~~~~~l~~v~llViDEaH~ll 1567 (1832)
+..++.+++.....++..+.|+..............+|+|+|.+.+..... ...+..-++++||+||+|.+-
T Consensus 73 W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 73 WKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred hhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 999999998655566766666652222222233468999999998871110 011222358999999999883
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-06 Score=106.44 Aligned_cols=119 Identities=22% Similarity=0.268 Sum_probs=72.3
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
+..|++-++|+|||..++..+. ++.... .......+|||||. .|..|+..++.+++.+..+++..+.|+...
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~ 97 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSER 97 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHH
T ss_pred CCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhhhhhhhcccccccccccccccccccc
Confidence 5689999999999988766554 322111 11112359999999 888999999999986556677766666522
Q ss_pred HHHHHHHhcCCceeecCHHHHHHHH---HccccccCCceeEEEecchhhh
Q psy6409 846 EEQGFRLRLGCEIVIATPGRLIDVL---ENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 846 ~~~~~~l~~~~~IlV~TP~rL~d~l---~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
...........+|+|+|.+.+.... ....+.--.+++||+||+|.+-
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred ccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 2222223346899999999987110 0011222348999999999874
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-07 Score=115.51 Aligned_cols=334 Identities=19% Similarity=0.245 Sum_probs=199.0
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.++.+||...+..+.+ +=|-|+.-++|-|||.. .+.++.|+.... ...|| -||+||+-.|.. +..+
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K-------~~~GP-~LvivPlstL~N-W~~E 462 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK-------QMQGP-FLIIVPLSTLVN-WSSE 462 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc-------ccCCC-eEEeccccccCC-chhh
Confidence 3778888888877664 24678888999999986 445555654432 23466 578899988876 5566
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHH---HHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc--------
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQ---GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-------- 893 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d-------- 893 (1832)
|.+++.. +..+.+. |...... ........+|+++|.+.++. .+..+.--++.|+||||.|+|-+
T Consensus 463 f~kWaPS--v~~i~Yk-Gtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~ 537 (1157)
T KOG0386|consen 463 FPKWAPS--VQKIQYK-GTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDT 537 (1157)
T ss_pred ccccccc--eeeeeee-CCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHH
Confidence 7666543 3333333 3331111 11222458999999987754 22223334678999999999753
Q ss_pred --CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhcc--------ccccceEEE--EEec-----------------
Q psy6409 894 --MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS--------KKKYRQTVM--FTAT----------------- 944 (1832)
Q Consensus 894 --~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~q~v~--~SAT----------------- 944 (1832)
..|....+.|+.-.|..+..|.-.. .+.-++..+.. ...+.+..+ ..+|
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWa--LLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRP 615 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWA--LLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRP 615 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHH--HHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhH
Confidence 2344444444443333222111000 00000000000 000001111 0111
Q ss_pred -------------CChHHHHHH------------------------------------------HHhcCCCcEEEEcccC
Q psy6409 945 -------------MPPAVERLA------------------------------------------RSYLRRPATVYIGSVG 969 (1832)
Q Consensus 945 -------------l~~~v~~~~------------------------------------------~~~l~~p~~v~~~~~~ 969 (1832)
+|..++.+. +...+.|..+.
T Consensus 616 FlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~----- 690 (1157)
T KOG0386|consen 616 FLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFA----- 690 (1157)
T ss_pred HHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhh-----
Confidence 121111111 11111111110
Q ss_pred CCCcceEEE---EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 970 KPTERIEQI---VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 970 ~~~~~i~q~---~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
.....+.-. ...+....|+..|-.+|-. ..+++++.||.-..--..+..+|.-.++...-+.|....++|-..++
T Consensus 691 ~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~ 770 (1157)
T KOG0386|consen 691 NVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLE 770 (1157)
T ss_pred hhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHH
Confidence 000000000 0112234455555555543 35789999999988889999999999999999999999999999999
Q ss_pred HHhCCCC---cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1045 SLKGGSK---DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1045 ~F~~G~~---~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
.|..... ..|.+|-..+.|+|+-..+.||.||.-.++....|+--||-|-|..-.+-++.
T Consensus 771 ~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 771 IFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred HhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9986544 46889999999999999999999999999999999999999998775444433
|
|
| >KOG0386|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=112.67 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC---cEEEEcccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK---DILVATDVA 1735 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~---~VLVATdvl 1735 (1832)
.|...|-.+|-+ ..++++|.||.-..--..+-.+|.-.++.-.-+.|....++|-..++.|..-.. ..|.+|...
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstrag 789 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAG 789 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccc
Confidence 344444444433 257899999999888888888998889999999999999999999999986543 367799999
Q ss_pred cccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1736 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1736 ~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
+.|+|+...+.||.||.-+++....|+--||-|.|+.-.+-++..
T Consensus 790 glglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 790 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 999999999999999999999999999999999997765555544
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.7e-07 Score=92.06 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
|.=.++-..+|+|||--.+--++.... ..+.++|||+|||.++..+.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i-----------~~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~ 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI-----------KRRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH-----------HTT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH-----------HccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee
Confidence 334578889999999864443432211 24788999999999999998888654 22221 11110
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l 1566 (1832)
. ....+.-|-|+|-..+...+.+ ...+.++++||+||||.+
T Consensus 67 ~-----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 67 R-----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--
T ss_pred c-----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC
Confidence 0 1123456788999988887766 556789999999999953
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=99.28 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=98.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|+ .|++.|.-++-.+..|+ |+...||=|||++..+|+..+.+ .|..|=|++..-.||..=++.+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------------~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------------QGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------------TSS-EEEEESSHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------------hcCCcEEEeccHHHhhccHHHH
Confidence 454 89999999998887776 99999999999999998875432 4777999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~ 892 (1832)
..+...+|+.+.+++++.+..+..... .++|+++|...+. |.|.... .....+.++||||||.|+
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999998865433332 4789999999886 4443321 135678999999999865
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-06 Score=98.24 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=98.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|+ .|++.|.-++-.+..|+ |+...||-|||++..+|++.... .|..|=|++...-||..=+.++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------------~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------------QGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------------TSS-EEEEESSHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------------hcCCcEEEeccHHHhhccHHHH
Confidence 565 89999999998787766 99999999999999888875443 4777999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll 1567 (1832)
..+...+|+.+.+++++.+........ .++|+.+|...+. +.|+.+. .....+.++||||||.++
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999988865432222 3789999998875 4554422 235678999999999765
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=90.18 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc-EEEeccccc
Q psy6409 985 QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD-ILVATDVAG 1061 (1832)
Q Consensus 985 ~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~-VLVaTdv~~ 1061 (1832)
..|+..|-++|.. ..+.++|+|..--+..+.+-++|...++...-+.|.....+|..++..|....+- .|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 3455555555543 3567899999999999999999999999999999999999999999999876554 588999999
Q ss_pred ccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1062 rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
-|||+-+.+.||.||--.++..-.|-+.||-|-|.. -+++.+++..
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999998889999999998875 4567777765
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-05 Score=107.58 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=167.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcch
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~ 1520 (1832)
+.-+|+=-||||||+.....+-. +... ...|.++||+-.++|-.|+.+.+..++....... ...+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCH
Confidence 45888999999999986554432 3222 4688999999999999999999999864332211 22333
Q ss_pred HHHHHHhhcC-CcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhH
Q psy6409 1521 EEQGFRLRLG-CEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 1597 (1832)
Q Consensus 1521 ~~~~~~l~~~-~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~ 1597 (1832)
..-...+..+ ..|||+|.++|...+.... ..-.+=-+||+||||+-- ++..-..+-..++
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-------------- 402 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-------------- 402 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc--------------
Confidence 3333334433 4899999999988886641 112223468899999642 2222222222222
Q ss_pred HHHHhhhccccCcceEEEEEccCChHHHHH-HHHhcCCCcEEEE-cccCCCCcceEEEEEEc------------------
Q psy6409 1598 NKLLANYNSKKKYRQTVMFTATMPPAVERL-ARSYLRRPATVYI-GSVGKPTERIEQIVYIL------------------ 1657 (1832)
Q Consensus 1598 ~~l~~~~~~~~~~~q~v~~SATl~~~~~~~-~~~~l~~p~~v~i-~~~~~~~~~i~q~~~~~------------------ 1657 (1832)
....++||+|+-..-... ....+......+. ...-.....+...+...
T Consensus 403 ------------~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~ 470 (962)
T COG0610 403 ------------KAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELD 470 (962)
T ss_pred ------------cceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhH
Confidence 256889998863222111 1111221111111 11000000000000000
Q ss_pred ------ch--hhH------------------HH---HHHHHHH--hCCCCcEEEEECchhHHHHHHHHHHHcC-------
Q psy6409 1658 ------SE--QDK------------------RK---KLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLG------- 1699 (1832)
Q Consensus 1658 ------~~--~~k------------------~~---~l~~~l~--~~~~~~vIVFv~s~~~a~~l~~~L~~~~------- 1699 (1832)
.. ..+ .. .+.+.+. .....++++.|+++.-|..+++.+....
T Consensus 471 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~ 550 (962)
T COG0610 471 ERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKE 550 (962)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhh
Confidence 00 000 00 0111111 1244577888888775555555443220
Q ss_pred ------------C----cEEEEcCCCCHHHHHHHHHH--hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1700 ------------Y----NACTLHGGKGQEQRELALNS--LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1700 ------------~----~v~~lHg~ls~~~R~~il~~--F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
+ .....|... ...+...... +.....++||-++.+-.|.|.|.++ ++-+|-|----..+|
T Consensus 551 ~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~Q 628 (962)
T COG0610 551 SLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQ 628 (962)
T ss_pred hhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHH
Confidence 0 000011111 2233344444 3567889999999999999999554 566777877788999
Q ss_pred HhcccccC--C--CccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1762 RIGRTGRA--G--KEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1762 RiGRaGR~--g--~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
-+-|+.|. + ..|..+.|+. -...+.+..+++.
T Consensus 629 AisRtNR~~~~~K~~G~IVDf~g--l~e~l~~Al~~Y~ 664 (962)
T COG0610 629 AISRTNRVFPGKKKFGLIVDFRG--LKEALKKALKLYS 664 (962)
T ss_pred HHHHhccCCCCCCCCcEEEECcc--hHHHHHHHHHHhh
Confidence 99999993 4 2377776666 3334444444333
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-05 Score=108.61 Aligned_cols=123 Identities=22% Similarity=0.307 Sum_probs=103.8
Q ss_pred hHHHHHHHHH-Hh--CCCC--cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC--CCcEEEEcc
Q psy6409 1661 DKRKKLMEVL-NR--GVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATD 1733 (1832)
Q Consensus 1661 ~k~~~l~~~l-~~--~~~~--~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g--~~~VLVATd 1733 (1832)
.|...+.+++ .. .... ++|||++.......+...|...++....++|+++...|...++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5666666666 22 2344 899999999999999999999998999999999999999999999986 444667778
Q ss_pred cccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccE--EEEEeeCCC
Q psy6409 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDD 1783 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~d 1783 (1832)
+.+.|+|+-..++||+||..+++....|.+.|+-|.|+... ++-|++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999887654 444455553
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=112.76 Aligned_cols=123 Identities=22% Similarity=0.308 Sum_probs=104.6
Q ss_pred hHHHHHHHHH-Hc--CCCC--CEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEecc
Q psy6409 986 DKRKKLMEVL-NR--GVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATD 1058 (1832)
Q Consensus 986 ~k~~~L~~~l-~~--~~~~--~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G--~~~VLVaTd 1058 (1832)
.|...+.+++ .. ..+. ++|||+......+.+...|...++....++|+++...|..+++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5666666666 22 2344 899999999999999999999998999999999999999999999986 445677788
Q ss_pred cccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCCC
Q psy6409 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKDD 1108 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~d 1108 (1832)
+++.|+|+-..++||.||...++....|...|+-|.|... .++.|++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999999999999999999999999988764 4556666653
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.6e-05 Score=94.75 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc-EEEEcccccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD-ILVATDVAGR 1737 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~-VLVATdvl~~ 1737 (1832)
.|+..|-.+|.. ..++++|+|..--+..+.+-.+|...++.-.-+.|.....+|..++..|....+- .|.+|.+.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 444455555543 3567899999998999999999999999999999999999999999999886654 5779999999
Q ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCcc--EEEEEeeCC
Q psy6409 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1782 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G--~ai~~~~~~ 1782 (1832)
|||+.+.+.||.||--++++-=.|-+-||-|.|+.- .++-+++..
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999999998753 455556655
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.3e-05 Score=101.93 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=75.5
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
+..+|.=-||||||++.+-.+- .+.. ....|.++||+-+++|-.|+...|..+........ .-.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~---------~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLE---------LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHh---------ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCH
Confidence 3589999999999997554442 2222 14678999999999999999999999865433211 22233
Q ss_pred HHHHHHHhcC-CceeecCHHHHHHHHHcc-c-cccCCceeEEEecchhh
Q psy6409 846 EEQGFRLRLG-CEIVIATPGRLIDVLENR-Y-LVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 846 ~~~~~~l~~~-~~IlV~TP~rL~d~l~~~-~-~~l~~~~~lViDEaH~l 891 (1832)
.+-...+..+ ..|+|+|-+++-..+... . ..-..=-+||+||||+-
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 3333344433 489999999997777554 1 11222347889999963
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=100.55 Aligned_cols=326 Identities=22% Similarity=0.247 Sum_probs=182.2
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH-hcCCCCCeE
Q psy6409 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIRT 1511 (1832)
Q Consensus 1433 ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~-~~~~~g~~v 1511 (1832)
.+.++...+-+++-..||.|||.-+.--+|..+.... .....-+++-.|++--+.-+.+.+.+ -+...+-.|
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-------~g~~~na~v~qprrisaisiaerva~er~e~~g~tv 458 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-------NGASFNAVVSQPRRISAISLAERVANERGEEVGETC 458 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-------ccccccceeccccccchHHHHHHHHHhhHHhhcccc
Confidence 3344455566888899999999998888887776532 22334477778888766665555432 222222111
Q ss_pred EEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCC--CC
Q psy6409 1512 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL--KP 1589 (1832)
Q Consensus 1512 ~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~--~~ 1589 (1832)
|-...-+... .+.-..|..+|.|-++.++.+. +..+.++|+||.|.-.-. .+-+..|+.-|..+.- +.
T Consensus 459 ----gy~vRf~Sa~-prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 459 ----GYNVRFDSAT-PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred ----cccccccccc-cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhh
Confidence 1111111111 1112358899999999888874 456788999999942211 1122222222211100 00
Q ss_pred CC-chhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC------------CCCc------ce
Q psy6409 1590 DT-EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG------------KPTE------RI 1650 (1832)
Q Consensus 1590 ~~-~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~------------~~~~------~i 1650 (1832)
.- +.......+... ....+++.+.++|+|-.. ++...+..+......... .+.. ++
T Consensus 529 ~lmsatIdTd~f~~~---f~~~p~~~~~grt~pvq~--F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~ 603 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNF---FSSIPDVTVHGRTFPVQS--FFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNI 603 (1282)
T ss_pred hhhhcccchhhhhhh---hccccceeeccccccHHH--HHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccc
Confidence 00 000011111111 224457788888887542 222222222111110000 0000 00
Q ss_pred ----------EEEEEEcchhhHHHHHHHHH-----HhCCCCcEEEEECchhHHHHHHHHHHHc-------CCcEEEEcCC
Q psy6409 1651 ----------EQIVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKL-------GYNACTLHGG 1708 (1832)
Q Consensus 1651 ----------~q~~~~~~~~~k~~~l~~~l-----~~~~~~~vIVFv~s~~~a~~l~~~L~~~-------~~~v~~lHg~ 1708 (1832)
........+..-...|.+.+ ...-.+-++||.+--...-.|...|... .+.+...|+.
T Consensus 604 ~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq 683 (1282)
T KOG0921|consen 604 LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQ 683 (1282)
T ss_pred ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhh
Confidence 00000001111111122221 1223456899998887777777776543 4677889999
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------------------CCHHHHHHHhcccccCC
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------------------KSIEDYTHRIGRTGRAG 1770 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------------------~s~~~yiQRiGRaGR~g 1770 (1832)
+...+...+.+....|..++++.|.+++.-+-|-++..||..+.- .+..+.+||.||+||.
T Consensus 684 ~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv- 762 (1282)
T KOG0921|consen 684 LTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV- 762 (1282)
T ss_pred cccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-
Confidence 998899999999999999999999999999988887777753321 2567889999999995
Q ss_pred CccEEEEEeeC
Q psy6409 1771 KEGLAVSFCTK 1781 (1832)
Q Consensus 1771 ~~G~ai~~~~~ 1781 (1832)
..|.|..++..
T Consensus 763 R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 763 RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccHH
Confidence 57888877765
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-05 Score=94.90 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC--CCccEEEE-----------EeeCCChhHHHHH
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKEGLAVS-----------FCTKDDSHLFYDL 1790 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~--g~~G~ai~-----------~~~~~d~~~~~~l 1790 (1832)
...+.+++-.+|-+|.|=|+|=.++-+....|..+=+|.+||+.|- +..|.-++ ++..+..+|...|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999993 44554443 5556678888888
Q ss_pred HHHhhcC
Q psy6409 1791 KQMMISS 1797 (1832)
Q Consensus 1791 ~~~l~~~ 1797 (1832)
...+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766544
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.7e-05 Score=98.70 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=56.7
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC--CCcc-------EEEEE-eeCCChhHHHHHHHHh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKEG-------LAVSF-CTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~--g~~G-------~ai~~-~~~~d~~~~~~l~~~l 1794 (1832)
..+.+++-++|.+|.|.|++-.+..+.-..|...-.|.+||..|. ++.| .-+++ ++.+...|...|...+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999889999999999999993 2222 23444 4445567888887776
Q ss_pred hc
Q psy6409 1795 IS 1796 (1832)
Q Consensus 1795 ~~ 1796 (1832)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 44
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=97.93 Aligned_cols=54 Identities=22% Similarity=0.143 Sum_probs=44.9
Q ss_pred hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 853 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 853 ~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
.....|+++||..|..-|..+.+.++.+..|||||||++.+..-...+..++..
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 345779999999999878888889999999999999999877666666666654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=96.05 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=42.3
Q ss_pred cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1529 ~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
....|+++||..|..-+..+.+.+..|..|||||||++.+..-..-+-.++.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr 57 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYR 57 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHH
Confidence 3567999999999988888889999999999999999987655544555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=97.53 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=71.1
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH---------HhcCCCCCeEE
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN---------KFGTPLGIRTV 837 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~---------~~~~~~~i~v~ 837 (1832)
|+.+.++||+|||.+|+-.|+..... ....+.||+||+.+.-..+...+. .......+...
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~----------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK----------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH----------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 68999999999999999988765322 234679999999998877765544 11112224444
Q ss_pred EEEcCC-------chHHHHHHH--hc-----CCceeecCHHHHHHHHH-ccc----------c---ccCCc-eeEEEecc
Q psy6409 838 LVVGGL-------SREEQGFRL--RL-----GCEIVIATPGRLIDVLE-NRY----------L---VLNQC-TYIVLDEA 888 (1832)
Q Consensus 838 ~~~Gg~-------~~~~~~~~l--~~-----~~~IlV~TP~rL~d~l~-~~~----------~---~l~~~-~~lViDEa 888 (1832)
.+.++. +...+.... .. ..+|+|+|-++|..-.. +.. . .+... -+||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 111221111 11 47899999998864221 110 0 11111 37999999
Q ss_pred hhhhc
Q psy6409 889 DRMID 893 (1832)
Q Consensus 889 H~l~d 893 (1832)
|++-.
T Consensus 211 h~~~~ 215 (986)
T PRK15483 211 HRFPR 215 (986)
T ss_pred CCCCc
Confidence 98853
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=90.28 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC--CCCcEEEE-----------EecCCCchHHHHH
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKEGLAVS-----------FCTKDDSHLFYDL 1115 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~--g~~G~ai~-----------~~~~~d~~~~~~l 1115 (1832)
...+.|.+-.++-+|.|=|+|-.++-.....|..+=.|.+||+.|- ...|.-++ ++..++..|+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999888999999999999993 33454443 5666677888888
Q ss_pred HHHHhcC
Q psy6409 1116 KQMMISS 1122 (1832)
Q Consensus 1116 ~~~l~~~ 1122 (1832)
.+-++.+
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766554
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.75 E-value=6e-05 Score=86.70 Aligned_cols=112 Identities=25% Similarity=0.305 Sum_probs=80.7
Q ss_pred CcchhHhhHhHHHHHhhcc-ccccccccCCCceEEEEcccHHHHHHHHHHHHhcCCCccceEE-EEeCCcchHHHhHHhh
Q psy6409 35 SGKTLAFLLPLLVWIQSLP-KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV-LVVGGLSREEQGFRLR 112 (1832)
Q Consensus 35 sGKTlaf~lP~l~~~~~~~-~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~~~~~~~~-~~~gg~~~~~q~~~l~ 112 (1832)
+..|+.-|-..|..+-... ...........|.+|||+..--=|.+|.+.++.|... +..++ ++..=.-..+|+..|+
T Consensus 96 ~~r~l~nL~~fLk~~~~~~~~l~~~~~~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~ 174 (252)
T PF14617_consen 96 KPRTLDNLPSFLKQFSPKKKKLSKKPKEKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLK 174 (252)
T ss_pred CCcccchHHHHHHHhccchhhhhhcccCCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHH
Confidence 4556655444444332110 1222223356799999999999999999999999522 12222 3334456899999999
Q ss_pred c-CccEEEcCchhhHHHhhhccccCCcceEEEEccc
Q psy6409 113 L-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 147 (1832)
Q Consensus 113 ~-~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEa 147 (1832)
. .++|.|||||||..++++|.+.++.+++||||=-
T Consensus 175 ~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s 210 (252)
T PF14617_consen 175 KTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWS 210 (252)
T ss_pred hCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCC
Confidence 5 6899999999999999999999999999999854
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=85.19 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
++++-|.+|+..++.... .+|.||.|+|||.+..- ++..+..... ......+.++|+++|+...+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999998 99999999999964333 3333211000 01135678999999999999999998887
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=83.37 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
++++.|.+|+..++...+ .+|.+|.|+|||.+..- ++..+...-. ......+.++|+++|+..-++++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368999999999999998 99999999999965333 3322210000 01134678899999999999999998888
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00053 Score=77.45 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
++++-|.+|+..++.+. -+++.|+.|+|||.+. -.+...+. ..+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~-----------~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALE-----------AAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHH-----------HTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHH-----------hCCCeEEEECCcHHHHHHHHHh
Confidence 47889999999998654 3778899999999853 33443332 1368899999999988876555
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00027 Score=77.66 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=73.6
Q ss_pred HHHHhCCCCcEEEEECchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc--cccccCCCCC
Q psy6409 1668 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATD--VAGRGIDIKD 1743 (1832)
Q Consensus 1668 ~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~--~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd--vl~~GIDip~ 1743 (1832)
+++.. .++.+|||++|....+.++..+..... ...++.. +......+++.|+.+.-.||+|+. .+.+|||+|+
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 44443 458899999999999999998876531 1223332 355788999999999999999998 9999999996
Q ss_pred --CCEEEEeCCCC----C--------------------------HHHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1744 --VSMVINYDMAK----S--------------------------IEDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1744 --v~~VI~~d~P~----s--------------------------~~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
+..||...+|. + +....|-+||+-|..++--++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 77899988873 1 12345889999997654333334443
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=74.92 Aligned_cols=112 Identities=23% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
++++-|.+|+..++... -+++.+|.|+|||.+. -.+...+.. .+..+++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-----------~g~~v~~~apT~~Aa~~L~~~~-- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-----------AGKRVIGLAPTNKAAKELREKT-- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-----------TT--EEEEESSHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-----------CCCeEEEECCcHHHHHHHHHhh--
Confidence 36889999999998654 3677799999999753 334444332 3678999999999888765552
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc----ccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----VLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~----~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
++.+ .|-.+++........ .+...++||||||-.+. ...+..+
T Consensus 67 -----~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~l 113 (196)
T PF13604_consen 67 -----GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARL 113 (196)
T ss_dssp -----TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHH
T ss_pred -----Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHH
Confidence 1111 222222111111111 15566899999999553 4567777
Q ss_pred HHhCC
Q psy6409 1579 LEYMP 1583 (1832)
Q Consensus 1579 l~~l~ 1583 (1832)
+..++
T Consensus 114 l~~~~ 118 (196)
T PF13604_consen 114 LRLAK 118 (196)
T ss_dssp HHHS-
T ss_pred HHHHH
Confidence 77765
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.001 Score=82.48 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=68.8
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1417 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1417 ~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.+...++..++.-|..|+..++...=.|+++|.|+|||++..-.+++.+.. .+..+||.+|+.--++|+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----------~~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----------HAGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----------cCCceEEEcccchhHHHH
Confidence 455567889999999999999998889999999999999876555544432 355699999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEC
Q psy6409 1497 EEETNKFGTPLGIRTVLVVG 1516 (1832)
Q Consensus 1497 ~~~~~~~~~~~g~~v~~l~g 1516 (1832)
+..+.+- |++|+-+..
T Consensus 471 aeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 471 AEKIHKT----GLKVVRLCA 486 (935)
T ss_pred HHHHHhc----CceEeeeeh
Confidence 9988874 577776653
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0013 Score=81.53 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=67.6
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
.+...|+.+++.-|..|+..+++..=.|++||.|+|||.+-.--+++.+ + ..+..+||.+|+...+.|+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~----------~~~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-R----------QHAGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-H----------hcCCceEEEcccchhHHHH
Confidence 5556788999999999999999999999999999999987655444433 2 1356799999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEE
Q psy6409 822 EEETNKFGTPLGIRTVLVV 840 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~ 840 (1832)
++.+.+- |++|+-+.
T Consensus 471 aeKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 471 AEKIHKT----GLKVVRLC 485 (935)
T ss_pred HHHHHhc----CceEeeee
Confidence 9988875 56666554
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00049 Score=85.42 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+.+.+-|.+|+..+...++ .++.||.|+|||..-..-|.+.+. .+.++||.+||++-+.-+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------------cCCeEEEEcCchHHHHHHHHHhc
Confidence 4577889999999999877 788899999999986666655442 46899999999999988888644
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=85.78 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
..+++.|..|+..++.. ..++|.||+|+|||.+..-.+.+.+ ..|.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~------------~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV------------KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH------------HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999986 5688999999999976443333322 1356899999999999999888876
Q ss_pred h
Q psy6409 828 F 828 (1832)
Q Consensus 828 ~ 828 (1832)
.
T Consensus 224 ~ 224 (637)
T TIGR00376 224 C 224 (637)
T ss_pred C
Confidence 3
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG4676|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00026 Score=82.22 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=8.3
Q ss_pred eEEEEEccCcHHHH
Q psy6409 243 QTVMFTATMPPAVE 256 (1832)
Q Consensus 243 ~~~~~~~~~~~~~~ 256 (1832)
|.++-+-+|||..-
T Consensus 130 ~ailktP~Lp~~~~ 143 (479)
T KOG4676|consen 130 NAILKTPELPPQAA 143 (479)
T ss_pred cceecCCCCChHhh
Confidence 34555577777653
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0026 Score=71.48 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
+...|+.|..++.+++...-+++.||.|||||+.++-.++..+.. ....+++|+-|+.+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----------TS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----------CCCcEEEEEecCCCC
Confidence 356788999999999988889999999999999999988877643 345578888887653
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00094 Score=73.45 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=72.8
Q ss_pred HHHHcCCCCCEEEEEcccchHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc--cccccCCCcC
Q psy6409 993 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATD--VAGRGIDIKD 1068 (1832)
Q Consensus 993 ~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~--~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd--v~~rGlDip~ 1068 (1832)
+++. ..++.+|||++|....+.+.+.+...+. ...++.- ....+..+++.|+.+.-.||+|+. .+.+|||+|+
T Consensus 3 ~l~~-~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELIS-AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHH-CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHh-cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 4444 3457899999999999999998876531 1222332 356789999999999999999999 9999999996
Q ss_pred --cCEEEEcCCCC----C--------------------------HhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1069 --VSMVINYDMAK----S--------------------------IEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1069 --v~~VI~~d~p~----s--------------------------~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
+..||..++|. + +....|-+||+=|...+--++.++
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 66899888874 1 123468899999977653333333
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0058 Score=71.63 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGL----------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il----------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
+.||+.++.. ..++..|.+++-.+. .+...++.-.||.||--...-.|+..+.+
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---------- 89 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---------- 89 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc----------
Confidence 4677655442 257888988876543 23568999999999986544445544432
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc---cccc--
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVL-- 1552 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~---~~~l-- 1552 (1832)
...++|++..+-.|-....+.|+.++.. .+.+..+.. ..... .......||++|-..|....... ...+
T Consensus 90 -Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~q 163 (303)
T PF13872_consen 90 -GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYGD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQ 163 (303)
T ss_pred -CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccCc---CCCCCCCccchhHHHHHhHHhccCCccchHHH
Confidence 2446999999999999999999998644 333322221 11110 01123468999988887665321 1111
Q ss_pred ------CC-ceeEEEccchhhhcC
Q psy6409 1553 ------NQ-CTYIVLDEADRMIDM 1569 (1832)
Q Consensus 1553 ------~~-v~llViDEaH~ll~~ 1569 (1832)
.+ =.+|||||||.+-..
T Consensus 164 l~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 164 LVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HHHHHhcCCCceEEeccchhcCCC
Confidence 11 268999999987554
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=83.18 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
..+++.|..|+..++.. ..+++.+|+|+|||.+..-.+...+. .+.++|+++||..-+.++...+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 56889999999999765443333322 356899999999999998888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 224 ~ 224 (637)
T TIGR00376 224 C 224 (637)
T ss_pred C
Confidence 4
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0021 Score=79.70 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=63.6
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
-+||.|..|||||++++--+.. + .....+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l---------~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-L---------QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-h---------hccccCCceEEEEecchHHHHHHHHHhhhccc---------------
Confidence 3789999999999976543332 1 11235778999999999999888777664200
Q ss_pred HHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc
Q psy6409 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 847 ~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d 893 (1832)
......+..|..++..+.........+++|||||||+|.+
T Consensus 58 -------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112234555555444432223567899999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=67.05 Aligned_cols=152 Identities=20% Similarity=0.252 Sum_probs=98.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc---CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ---NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~---grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
++|+....|.+++=-+.. + --.++.|.+....+.+ |.|.+...-.|.|||.+ ++|++..+.. ..
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA----------dg 69 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA----------DG 69 (229)
T ss_pred CCCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc----------CC
Confidence 468878888888766543 3 3678999999988886 57999999999999987 7888876543 22
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcC-CCCCeEEE--EEcCCchHHH----HH----HHhcCCceeecCHHHHHHHHHcc
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGT-PLGIRTVL--VVGGLSREEQ----GF----RLRLGCEIVIATPGRLIDVLENR 873 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~-~~~i~v~~--~~Gg~~~~~~----~~----~l~~~~~IlV~TP~rL~d~l~~~ 873 (1832)
...+.+++| ++|..|....+..... -++-++.. ..-....+.. .. ......-|+++||+-++.+...+
T Consensus 70 ~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 70 SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 345666666 5799999888875432 23333322 2222222111 11 12235679999999886543221
Q ss_pred -------c-----------cccCCceeEEEecchhhhc
Q psy6409 874 -------Y-----------LVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 874 -------~-----------~~l~~~~~lViDEaH~l~d 893 (1832)
. ..+.....=|+||+|..+.
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1 0233445679999998765
|
There are two conserved sequence motifs: LLE and NMG. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0036 Score=70.35 Aligned_cols=59 Identities=25% Similarity=0.230 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
...|+.|..++.+++...-+++.+|.|||||+.++-.++..+.. ....+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----------TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----------CCCcEEEEEecCCCC
Confidence 35688999999999987889999999999999998888877644 345678888887654
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0049 Score=76.07 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=58.1
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH-hcCCCCCeEEEEEcCCchHHH-
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIRTVLVVGGLSREEQ- 848 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~-~~~~~~i~v~~~~Gg~~~~~~- 848 (1832)
.+.||||||++.+-.||.+..+ ....-|+.|.......-....|.. +...+=..-...++|....-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~k-----------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK-----------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh-----------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 4789999999988777766532 233456666554443333222221 000000011111222111000
Q ss_pred ---HHHHhcCCceeecCHHHHHHHHHccc---c---ccCCceeE-EEecchhhhc
Q psy6409 849 ---GFRLRLGCEIVIATPGRLIDVLENRY---L---VLNQCTYI-VLDEADRMID 893 (1832)
Q Consensus 849 ---~~~l~~~~~IlV~TP~rL~d~l~~~~---~---~l~~~~~l-ViDEaH~l~d 893 (1832)
......+..|..+|.+.|...+.+.. + ++.+..+| +-|||||+-.
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 00123367899999999987765432 2 44455544 4599999863
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0041 Score=58.58 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=40.9
Q ss_pred HHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 758 AIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 758 ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
|+..++. +.-++|.||.|||||...+--+...+.. .... +..++|++||+.++..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~-------~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAA-------RADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHH-------hcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444 3446669999999997655544443311 0112 678999999999999988887
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0033 Score=77.91 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=62.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
++|.+..|||||++++-.+... .....+..++++++...|...+...+......
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l----------~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL----------QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh----------hccccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 6888999999999865444322 11235778999999999999888777664200
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
......+..|..+...+.........+++|||||||+|..
T Consensus 58 ------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112334445444443332234567899999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0023 Score=79.75 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
..+.+-|.+|+..++..++ .++.+|.|+|||..-...|.+.+. .+.++||.+||.+-+.-+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------------cCCeEEEEcCchHHHHHHHHHhc
Confidence 3678899999999998866 678899999999987776666554 36889999999998888877543
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=66.20 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=96.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCC
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ---NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 1479 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~---g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~ 1479 (1832)
.+|+...-|.+++=-+. .++ -.+|.|.++...+.+ |.|.+..+-.|.|||.+ ++|++..+.. ..
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA----------dg 69 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA----------DG 69 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc----------CC
Confidence 56777777777664443 233 689999999988885 57999999999999998 6888876543 22
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHH-hcCCCCCeEEEEE--CCcchHH----HHH----HhhcCCcEEEeCHHHHHHHHHcc
Q psy6409 1480 GPYAIIMAPTRELAQQIEEETNK-FGTPLGIRTVLVV--GGLSREE----QGF----RLRLGCEIVIATPGRLIDVLENR 1548 (1832)
Q Consensus 1480 ~~~vLiLaPtreLa~Qi~~~~~~-~~~~~g~~v~~l~--gg~~~~~----~~~----~l~~~~~IiVaTP~rl~~~l~~~ 1548 (1832)
...|.+++| ++|..|....+.. ++.-++-++..+. -...... ... .......|+++||+.+..+.-.+
T Consensus 70 ~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 70 SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 356777777 5799998888865 4433444443322 1111111 111 12234569999999887553211
Q ss_pred -------c-----------cccCCceeEEEccchhhhc
Q psy6409 1549 -------Y-----------LVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1549 -------~-----------~~l~~v~llViDEaH~ll~ 1568 (1832)
. -.+.....=|+||+|.++.
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1 0133445568999997664
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0053 Score=70.88 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=45.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
.++...+..|...+..+.++..+++.||+|+|||+.+....+..+.. ..-.+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~----------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH----------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc----------CCeeEEEEeCCCCC
Confidence 46777889999999999888889999999999999877766654421 12345666667654
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.017 Score=77.71 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=48.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
.++ .+++-|.+|+..+..++-+++.|+.|+|||.+. -.++..+.. ......+++++||-..|..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~---------~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE---------LGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH---------cCCCceEEEEeCchHHHHHHHH
Confidence 454 799999999999999899999999999999853 223332211 0112568889999888875443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.002 Score=84.39 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy6409 822 EEETNKF 828 (1832)
Q Consensus 822 ~~~~~~~ 828 (1832)
.+.|..+
T Consensus 313 ~~~f~~~ 319 (509)
T TIGR01642 313 KELLESF 319 (509)
T ss_pred HHHHHhc
Confidence 3333333
|
Members of this subfamily are found in plants, metazoa and fungi. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.019 Score=75.27 Aligned_cols=131 Identities=22% Similarity=0.234 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
.+.|+.|+-.++.++-+++.|+.|+|||.+..- ++..+... .......+++++||.-.|..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~-------~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQL-------ADGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-------cCCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 589999999999999999999999999986322 22222111 0112457899999999999888877665443
Q ss_pred CCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 832 ~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
+++. . . +......-..|--+|+..... .....-.+++||||||- |+| .+.+..++.
T Consensus 226 ~~~~-----~------~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd---~~lm~~ll~ 287 (615)
T PRK10875 226 LPLT-----D------E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVD---LPMMARLID 287 (615)
T ss_pred cccc-----h------h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-ccc---HHHHHHHHH
Confidence 3321 0 0 000111123343333322111 01123356899999999 544 345556666
Q ss_pred hCC
Q psy6409 906 YMP 908 (1832)
Q Consensus 906 ~l~ 908 (1832)
.++
T Consensus 288 al~ 290 (615)
T PRK10875 288 ALP 290 (615)
T ss_pred hcc
Confidence 664
|
|
| >KOG2888|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0015 Score=74.07 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=13.2
Q ss_pred ccHHHHHHHHHHHHhcCC
Q psy6409 72 PTRELAQQIEEETNKFGT 89 (1832)
Q Consensus 72 PtreLa~qi~~~~~~~~~ 89 (1832)
--.|+.-+|+.+++.+-+
T Consensus 81 tyhevideIyyqVkHvEP 98 (453)
T KOG2888|consen 81 TYHEVIDEIYYQVKHVEP 98 (453)
T ss_pred hHHHHHHHHHHHHhccCc
Confidence 346888888888877643
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=55.87 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=40.8
Q ss_pred HHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1433 AIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1433 ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
|+...+.+.+ +++.+|.|||||...+-.+...+.. .... +..++|++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~-------~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAA-------RADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHH-------hcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 5569999999997655555444321 0112 678999999999999988877
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.027 Score=73.78 Aligned_cols=131 Identities=24% Similarity=0.243 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC
Q psy6409 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832 (1832)
Q Consensus 753 ~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~ 832 (1832)
+.|+.|+..++.++-+++.|+.|+|||.+..- ++..+.... ....+.++++++||--.|..+.+.+......+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 78999999999999999999999999986322 322222110 01123679999999998888877776543332
Q ss_pred CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
+.. . .+.....+-..|-.+|+..... ..-..-.+++||||||= |++ .+.+..|+..
T Consensus 221 ~~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd---~~l~~~ll~a 282 (586)
T TIGR01447 221 AAA-----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVD---LPLMAKLLKA 282 (586)
T ss_pred ccc-----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCC---HHHHHHHHHh
Confidence 211 0 0000111223444444322110 01123357999999998 444 3455566666
Q ss_pred CC
Q psy6409 907 MP 908 (1832)
Q Consensus 907 l~ 908 (1832)
++
T Consensus 283 l~ 284 (586)
T TIGR01447 283 LP 284 (586)
T ss_pred cC
Confidence 54
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG4676|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0014 Score=76.46 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=6.0
Q ss_pred ccccCCCCCchh
Q psy6409 213 MPVTNLKPDTED 224 (1832)
Q Consensus 213 ~~~~~~~~~~~~ 224 (1832)
+|-..||+-+++
T Consensus 128 ~p~ailktP~Lp 139 (479)
T KOG4676|consen 128 SPNAILKTPELP 139 (479)
T ss_pred CccceecCCCCC
Confidence 455555554444
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=75.75 Aligned_cols=119 Identities=26% Similarity=0.364 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEecccc
Q psy6409 985 QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVA 1060 (1832)
Q Consensus 985 ~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~--~~VLVaTdv~ 1060 (1832)
..|+..|.-+|.. ..+.++|||+.-.+..+.|-.+|..+|+-..-+.|...-++|+..+++|.... +..+++|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 3455555444443 46789999999999999999999999999999999999999999999997543 3467889999
Q ss_pred cccCCCcCcCEEEEcCCCCCH------hHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSI------EDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~------~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
+.|||+-+.+.||.||--.++ .+..||||+| ++=..+.|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccc
Confidence 999999999999999987654 4566777776 245677788776
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.051 Score=67.56 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred EcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCC----CeEEEEECCcchH
Q psy6409 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSRE 1521 (1832)
Q Consensus 1446 ~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g----~~v~~l~gg~~~~ 1521 (1832)
.+.||||||++..-.||.++.+ ....-|+.|..-..+.-. ...|..... +.-.+.++|....
T Consensus 3 ~matgsgkt~~ma~lil~~y~k-----------gyr~flffvnq~nilekt---~~nftd~~s~kylf~e~i~~~d~~i~ 68 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK-----------GYRNFLFFVNQANILEKT---KLNFTDSVSSKYLFSENININDENIE 68 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh-----------chhhEEEEecchhHHHHH---HhhcccchhhhHhhhhhhhcCCceee
Confidence 5789999999877777766533 334567777754444332 222211110 0011111221111
Q ss_pred HH----HHHhhcCCcEEEeCHHHHHHHHHcc---cc---ccCCceeE-EEccchhhhc
Q psy6409 1522 EQ----GFRLRLGCEIVIATPGRLIDVLENR---YL---VLNQCTYI-VLDEADRMID 1568 (1832)
Q Consensus 1522 ~~----~~~l~~~~~IiVaTP~rl~~~l~~~---~~---~l~~v~ll-ViDEaH~ll~ 1568 (1832)
.. ......+..|+++|.+.|...+.+. .+ .+.+..+| +-|||||+-.
T Consensus 69 ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 69 IKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred eeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 00 0012335789999999998777542 22 34455554 5599999854
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.035 Score=64.29 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=44.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.++...+..|...+.++.+...+++.+|+|+|||+.+....+..+.. ....+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~----------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH----------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc----------CCeeEEEEeCCCCC
Confidence 34556788999999999888889999999999999877666644422 12345666666654
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.014 Score=76.24 Aligned_cols=140 Identities=21% Similarity=0.187 Sum_probs=89.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
+-....+.|.+.+. -+..++.-|++|+-.++..+| .+|.|=.|+|||......|- .+. ..|.+
T Consensus 652 ~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIk-iL~-----------~~gkk 715 (1100)
T KOG1805|consen 652 DALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIK-ILV-----------ALGKK 715 (1100)
T ss_pred cccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHH-HHH-----------HcCCe
Confidence 33344566666664 246789999999999999887 78889999999986433221 111 24889
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH-----------------HHhcCCceeecCHHHHHHHH
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF-----------------RLRLGCEIVIATPGRLIDVL 870 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~-----------------~l~~~~~IlV~TP~rL~d~l 870 (1832)
+|..+-|...+.-+.-.++.+ ++...-+-.+.....+.. .....+.||.+|-=-+
T Consensus 716 VLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi---- 787 (1100)
T KOG1805|consen 716 VLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI---- 787 (1100)
T ss_pred EEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----
Confidence 999999998888877777665 333222222222222211 2223467777773222
Q ss_pred HccccccCCceeEEEecchhhh
Q psy6409 871 ENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 871 ~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
....+...+++|.|||||-.++
T Consensus 788 ~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 788 NHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CchhhhccccCEEEEccccccc
Confidence 2223456679999999999765
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.027 Score=74.00 Aligned_cols=122 Identities=23% Similarity=0.296 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC--CcEEEEccccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVAG 1736 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~--~~VLVATdvl~ 1736 (1832)
.|+..|.-+|.. ..++++|||..-.+..+.|-.+|.-+|+--.-+.|..+-++|...+++|.... ...+.+|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 455555555543 36789999999999999999999999999999999999999999999997543 35677899999
Q ss_pred ccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC--ccEEEEEeeCC
Q psy6409 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKD 1782 (1832)
Q Consensus 1737 ~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~ 1782 (1832)
.|||+-+.+.||.||--+|+..=-|---|+-|.|+ .=..+-|++..
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999998876644443333333333 23444455554
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.041 Score=64.76 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=87.2
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc----------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ----------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 732 ~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
.+.||+.+... | .++..|-+++-.+-+ ..-.++--.||.||.-...--|+....
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l---------- 88 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL---------- 88 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH----------
Confidence 34677765542 3 468889888866542 123666668999998765544554432
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc---ccccC
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVLN 878 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~---~~~l~ 878 (1832)
....++|++..+..|-....+.++.++.. .+.+..+..- ... ......-.||.+|...|...-..+ ...++
T Consensus 89 -~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ 162 (303)
T PF13872_consen 89 -RGRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLD 162 (303)
T ss_pred -cCCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCCccchHH
Confidence 12447999999999999999999988654 3333333221 100 001124568999998887664321 11111
Q ss_pred ---------CceeEEEecchhhhcC
Q psy6409 879 ---------QCTYIVLDEADRMIDM 894 (1832)
Q Consensus 879 ---------~~~~lViDEaH~l~d~ 894 (1832)
.=.+|||||||.+-+.
T Consensus 163 ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 163 QLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HHHHHHhcCCCceEEeccchhcCCC
Confidence 1248999999987654
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=75.01 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=89.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
+..-....+.|.+.+. -+..++.-|++|+-.++..+| .+|.+-.|+|||......+-..+ ..|
T Consensus 650 f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~------------~~g 713 (1100)
T KOG1805|consen 650 FVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV------------ALG 713 (1100)
T ss_pred hhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH------------HcC
Confidence 3333344566666664 235788999999999998876 68888999999976443332211 147
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH-----------------HHhhcCCcEEEeCHHHHHH
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG-----------------FRLRLGCEIVIATPGRLID 1543 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~-----------------~~l~~~~~IiVaTP~rl~~ 1543 (1832)
.+||..+-|..-++-+.-.++.++ +..+-+..+.....+. ......+.||.+|-=-+.
T Consensus 714 kkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~- 788 (1100)
T KOG1805|consen 714 KKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN- 788 (1100)
T ss_pred CeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-
Confidence 889999999988888877777763 3333333222222111 122234678888732221
Q ss_pred HHHccccccCCceeEEEccchhhh
Q psy6409 1544 VLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1544 ~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
...+...+++|.|||||-.+.
T Consensus 789 ---~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 789 ---HPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ---chhhhccccCEEEEccccccc
Confidence 222445679999999998654
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.043 Score=74.04 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=48.5
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
..++ .+++-|.+|+..+..++-+++.++.|+|||.+. -.++..+... .....+++++||-.-|..+.
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~---------~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL---------GGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc---------CCCceEEEEeCchHHHHHHH
Confidence 3454 789999999999998888999999999999854 2333333220 11156888999988776543
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >KOG0151|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0035 Score=78.11 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=42.6
Q ss_pred cccCCCCChhhhhhcccccC---------CCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccH
Q psy6409 4 KIGYAEPTPIQRQAIPIGLQ---------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 74 (1832)
Q Consensus 4 ~~~~~~~~p~Q~~~ip~~l~---------g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~Ptr 74 (1832)
|+||..+-|+=..+|++... +-.+.-.|++|--| .||-. -+......+-+..||++||-
T Consensus 250 K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p~~----~~pn~--------N~e~~~~edv~~i~Vvip~d 317 (877)
T KOG0151|consen 250 KLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGPPK----SLPNQ--------NAELVNTEDVEDILVVIPTD 317 (877)
T ss_pred eeccccccccCCccccCCChhhhccCCCCccCCcccCCCCccc----cCCCc--------cccccCcCCccceeEecCch
Confidence 68999887777777765443 33444445555422 22211 11112224556788999999
Q ss_pred HHHHHHHHHHHhc
Q psy6409 75 ELAQQIEEETNKF 87 (1832)
Q Consensus 75 eLa~qi~~~~~~~ 87 (1832)
+-..++.+.+..|
T Consensus 318 ~~L~~vidrM~~f 330 (877)
T KOG0151|consen 318 RHLLMVIDRMAEF 330 (877)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877765555
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.043 Score=75.21 Aligned_cols=64 Identities=20% Similarity=0.053 Sum_probs=47.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
..|+ .+++-|.+|+..++.+++ +++.|+.|+|||.+ +-.+...+. ..|..++.++||--.|..+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----------~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----------AAGYEVRGAALSGIAAENL 406 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----------HcCCeEEEecCcHHHHHHH
Confidence 3454 699999999999998665 78999999999985 333333221 2477899999998766543
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.033 Score=72.45 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhch----h----hhh--------c--------cc
Q psy6409 750 EPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLP----K----IAR--------M--------ED 801 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~----~----~~~--------~--------~~ 801 (1832)
+|+|.|...+..++. ..+.++-.|||+|||++-+-..|.+...+. . ... . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999877766654 578999999999999987766665543221 0 000 0 00
Q ss_pred ------cCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 802 ------ADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 802 ------~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
...-|++.|-.-|..=..|+.+++++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 012466777777777778888888876443
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.036 Score=72.06 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCc----h-hhcccc-------------------
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLP----K-IARMED------------------- 1476 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p----~-~~~~~~------------------- 1476 (1832)
+|+|.|...+..++ ...+.++-.|||+|||++.+-..|.+...+. . ...+..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999998877666 4578999999999999987666665543322 0 000000
Q ss_pred c------CCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1477 A------DQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1477 ~------~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
. ..-|++.|-.-|..=..|+.+++++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0 11355666666777778898998887543
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.056 Score=71.05 Aligned_cols=131 Identities=23% Similarity=0.244 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1427 tpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
.+.|..|+-..+..+-+++.++.|+|||.+..- ++..+.... ......+++.+||-.-|..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~-------~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA-------DGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc-------CCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 589999999999999999999999999976322 222222210 112457889999998888877776554332
Q ss_pred CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1507 ~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
++. +.. +......-..|-.+|+..... ..-+.-.+++||||||- |++ .+.+..++.
T Consensus 226 ~~~---------~~~-----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd---~~lm~~ll~ 287 (615)
T PRK10875 226 LPL---------TDE-----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVD---LPMMARLID 287 (615)
T ss_pred ccc---------chh-----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-ccc---HHHHHHHHH
Confidence 221 000 000111123444444332211 11123356899999999 443 455666777
Q ss_pred hCC
Q psy6409 1581 YMP 1583 (1832)
Q Consensus 1581 ~l~ 1583 (1832)
.++
T Consensus 288 al~ 290 (615)
T PRK10875 288 ALP 290 (615)
T ss_pred hcc
Confidence 665
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.13 Score=63.95 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE-EEEc-cchhHHHHHHHHHHHhcCCCCCeEEEEEcC
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA-IIMA-PTRELAQQIEEETNKFGTPLGIRTVLVVGG 842 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~-Lila-PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg 842 (1832)
++.++++||||+|||.+..--+..+... ....+.++ ++-+ +.|.-|..+ ++.++..+|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~--------~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~---- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGIN--------SDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA---- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh--------hccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe----
Confidence 3568999999999998765433322111 00123333 3333 445555543 44444445554322
Q ss_pred CchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 843 ~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
+.++..+...+. .+..+++|+||++.++.
T Consensus 239 -----------------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 239 -----------------IESFKDLKEEIT----QSKDFDLVLVDTIGKSP 267 (388)
T ss_pred -----------------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCc
Confidence 223444434333 24678999999999765
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.082 Score=69.38 Aligned_cols=131 Identities=23% Similarity=0.237 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCC
Q psy6409 1428 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 1507 (1832)
Q Consensus 1428 piQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~ 1507 (1832)
+.|..|+..++.++-+++.++.|+|||.+..- ++..+.... ....++++++.+||-.-|..+.+.+......+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 78999999999999999999999999986322 222222110 01113579999999988888777665543222
Q ss_pred CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHHh
Q psy6409 1508 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581 (1832)
Q Consensus 1508 g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~ 1581 (1832)
+.. . . ......+-..|-.+++..... ..-+.-.+++||||||= |++ .+.+..++..
T Consensus 221 ~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd---~~l~~~ll~a 282 (586)
T TIGR01447 221 AAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVD---LPLMAKLLKA 282 (586)
T ss_pred ccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCC---HHHHHHHHHh
Confidence 210 0 0 000111223454444433211 01123367999999998 443 3456667776
Q ss_pred CC
Q psy6409 1582 MP 1583 (1832)
Q Consensus 1582 l~ 1583 (1832)
++
T Consensus 283 l~ 284 (586)
T TIGR01447 283 LP 284 (586)
T ss_pred cC
Confidence 65
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.056 Score=63.52 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.2
Q ss_pred HcCCcEEEEecCCChHHHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~ll 784 (1832)
-.+.+++++||+|+|||..+.-
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHH
Confidence 3578999999999999986544
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.024 Score=73.01 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHH
Q psy6409 1661 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL----------------------GYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~----------------------~~~v~~lHg~ls~~~R~~ 1716 (1832)
.|...|+++|... -+.++|||..|..+.+.+-.+|... |..-.-+.|..+...|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4555677777643 5678999999999999888888642 334456788899999999
Q ss_pred HHHHhhCCC----CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1717 ALNSLKGGS----KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1717 il~~F~~g~----~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
..+.|.+-. --.||+|.+.+.|||+-+.+-||.||..+++.-=+|-|=|+-|+|+.--+++|
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999997532 23799999999999999999999999999999999999999999987766665
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.013 Score=67.82 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=46.3
Q ss_pred HHhhccceecCCCCCCcccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHH
Q psy6409 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788 (1832)
Q Consensus 710 ~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~ 788 (1832)
|.+.-+...--.-+|..+.+|+++++|+-+.+.+.. .|. ++|.||||||||.. +-.|+.
T Consensus 88 f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId 147 (353)
T COG2805 88 FKQRGGYALVLRLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMID 147 (353)
T ss_pred hhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHH
Confidence 333333333334689999999999999988886543 465 89999999999976 556777
Q ss_pred HHhh
Q psy6409 789 WIQS 792 (1832)
Q Consensus 789 ~i~~ 792 (1832)
+|.+
T Consensus 148 ~iN~ 151 (353)
T COG2805 148 YINK 151 (353)
T ss_pred HHhc
Confidence 7744
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.052 Score=73.49 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
..+++-|.+|+..++.+ +-+++.|+.|+|||.+. -.++..+. ..|..+++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~-----------~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWE-----------AAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHH-----------hCCCeEEEEeCcHHHHHHHH
Confidence 35899999999999874 66899999999999752 22332221 23678999999977666543
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.073 Score=55.65 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=13.6
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++-++++||+|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999986443
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.058 Score=74.01 Aligned_cols=63 Identities=21% Similarity=0.063 Sum_probs=47.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.|+ .+++-|.+|+..++.+.+ +++.++.|+|||.+ +-++...+.. .|..|+.++||---|..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEecCcHHHHHHH
Confidence 455 799999999999998765 68889999999986 3334433322 477899999997766543
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.024 Score=68.97 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcC
Q psy6409 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830 (1832)
Q Consensus 751 pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~ 830 (1832)
+|+-|.+++.. ...+++|.|+.|||||.+.+--++..+... ......+|+|++|+..|.++...+...+.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--------~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--------GVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--------SSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc--------cCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47889999887 677899999999999998766665544321 12345699999999999999999888533
Q ss_pred CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC--CceeEEEecch
Q psy6409 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEAD 889 (1832)
Q Consensus 831 ~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH 889 (1832)
..... ......-.........+-|+|-..+...+.+...... .-.+-++|+..
T Consensus 71 ~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 21100 0000011112223467889998877765544332222 22567777777
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >KOG2888|consensus | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.011 Score=67.44 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=13.3
Q ss_pred ccCcH-HHHHHHHHHhcCCeEEEE
Q psy6409 249 ATMPP-AVERLARSYLRRPATVYI 271 (1832)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~~~~~~ 271 (1832)
.|-|| ++----|.||-|.-.|++
T Consensus 167 Ytqpp~dLw~WyEpyldDdeeidp 190 (453)
T KOG2888|consen 167 YTQPPADLWDWYEPYLDDDEEIDP 190 (453)
T ss_pred ecCChhHHHHHhhhhccchhhcCC
Confidence 34433 455556667777666666
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.027 Score=65.25 Aligned_cols=87 Identities=25% Similarity=0.289 Sum_probs=67.6
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCC-chHHHHHHHhc-CCceeecCHHHHHHHHHccccccCC
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL-SREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQ 879 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~-~~~~~~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~ 879 (1832)
....|.+|||+..=-=|..+.+.++.+.. -+..|+-+..-+ ...+|...+.. .++|.||||+||..++..+.+.++.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34678999999987778888888877631 123444444443 56777777764 5899999999999999999999999
Q ss_pred ceeEEEecch
Q psy6409 880 CTYIVLDEAD 889 (1832)
Q Consensus 880 ~~~lViDEaH 889 (1832)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999766
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.098 Score=70.92 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.+++-|.+|+..++.+ +-+++.++.|+|||.+.- +++..+.. .+..+++++||---|..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~-----------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA-----------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh-----------CCCeEEEEeCcHHHHHHH
Confidence 6899999999999875 557899999999997632 23333321 367899999997766554
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >KOG0670|consensus | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.034 Score=68.08 Aligned_cols=10 Identities=30% Similarity=0.182 Sum_probs=6.8
Q ss_pred EEEEecCCCh
Q psy6409 768 IIGVAETGSG 777 (1832)
Q Consensus 768 vIv~apTGSG 777 (1832)
..|+|-||-|
T Consensus 434 Y~V~~~~GkG 443 (752)
T KOG0670|consen 434 YEVQGYTGKG 443 (752)
T ss_pred eEEEeccccc
Confidence 5667777766
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.091 Score=54.95 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLP 1460 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lp 1460 (1832)
++-+++.||+|+|||.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHH
Confidence 456899999999999875443
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.22 Score=68.86 Aligned_cols=72 Identities=19% Similarity=0.046 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
+..+......+ ..+++-|.+|+..+.. ++-++++|+-|+|||.+. -++...+ ...|..++.++||-
T Consensus 369 ~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~-----------e~~G~~V~g~ApTg 435 (1102)
T PRK13826 369 EAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAW-----------EAAGYRVVGGALAG 435 (1102)
T ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHH-----------HHcCCeEEEEcCcH
Confidence 34444433334 4799999999998865 456899999999999853 2333222 12477899999997
Q ss_pred hHHHHH
Q psy6409 816 ELAQQI 821 (1832)
Q Consensus 816 eLa~Qi 821 (1832)
--|..+
T Consensus 436 kAA~~L 441 (1102)
T PRK13826 436 KAAEGL 441 (1102)
T ss_pred HHHHHH
Confidence 776654
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.15 Score=54.38 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=38.6
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCC-CcEEEEcccccccCCCCC--CCEEEEeCCC
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGS-KDILVATDVAGRGIDIKD--VSMVINYDMA 1753 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~-~~VLVATdvl~~GIDip~--v~~VI~~d~P 1753 (1832)
.++.-+....+...+++.|+... ..||+||.-+++|||+|+ +..||...+|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 34444555556788999998654 379999988999999996 4678887766
|
|
| >KOG1015|consensus | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.061 Score=69.56 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHH
Q psy6409 986 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL----------------------GYNACTLHGGKGQEQREL 1041 (1832)
Q Consensus 986 ~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~----------------------g~~v~~lhg~~~~~~R~~ 1041 (1832)
.|+..|+++|..+ -+.+.|||..+....+.+-.+|... |....-+.|..+...|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 3556677777653 5678999999999999888888542 344567889999999999
Q ss_pred HHHHHhCCC----CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEE
Q psy6409 1042 ALNSLKGGS----KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102 (1832)
Q Consensus 1042 il~~F~~G~----~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~ 1102 (1832)
..+.|.+-. .-.||+|-+.+-|||+-+.+-||.||...++.-=+|-|=|+-|.|+.--|++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 999997642 2379999999999999999999999999999999999999999998754443
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.048 Score=66.33 Aligned_cols=123 Identities=20% Similarity=0.116 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcC
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 1505 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~ 1505 (1832)
+|+-|.+++.. ...+++|.|+.|||||.+.+--++..+.... .....+|+|++|+..|.++...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47889999887 6789999999999999987766665554321 2345699999999999999888887532
Q ss_pred CCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccC--CceeEEEccch
Q psy6409 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEAD 1564 (1832)
Q Consensus 1506 ~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~--~v~llViDEaH 1564 (1832)
..... ......-.........+.|+|-..+...+-+...... .-.+-++|+..
T Consensus 71 ~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 21100 0000001111222456889998877654433222221 23566777776
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >TIGR01622 SF-CC1 splicing factor, CC1-like family | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.015 Score=75.02 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=5.1
Q ss_pred EEEEccchhHHHH
Q psy6409 808 AIIMAPTRELAQQ 820 (1832)
Q Consensus 808 ~LilaPtreLa~Q 820 (1832)
+.|...+.+-|..
T Consensus 231 afV~f~~~e~A~~ 243 (457)
T TIGR01622 231 GFIQFHDAEEAKE 243 (457)
T ss_pred EEEEECCHHHHHH
Confidence 3333444443333
|
A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.51 Score=57.99 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=48.5
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEE-EEc-cchhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI-IMA-PTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~L-ila-PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
+.+.++||||+|||.....-+.... ..+.++. |-+ |-|.-+.++ ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~------------~~GkkVglI~aDt~RiaAvEQ---Lk~yae~lgipv------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH------------GKKKTVGFITTDHSRIGTVQQ---LQDYVKTIGFEV------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH------------HcCCcEEEEecCCcchHHHHH---HHHHhhhcCCcE-------
Confidence 5689999999999987555443221 1244444 444 344333332 223322233322
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
+++.+|..+.+.+..-. ...++++|+||-+=+..
T Consensus 300 --------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 300 --------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNY 333 (436)
T ss_pred --------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccC
Confidence 22346766666554311 12258999999987654
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.29 Score=67.84 Aligned_cols=74 Identities=18% Similarity=0.039 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
+++..+......++ .+++-|.+|+..+..+ +=+++.++-|+|||.+. -++...+.. .|..++.++|
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-----------~G~~V~g~Ap 433 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-----------AGYRVVGGAL 433 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-----------cCCeEEEEcC
Confidence 44444444434444 7999999999987653 45888999999999863 333333322 4778999999
Q ss_pred cHHHHHHH
Q psy6409 1489 TRELAQQI 1496 (1832)
Q Consensus 1489 treLa~Qi 1496 (1832)
|---|..+
T Consensus 434 TgkAA~~L 441 (1102)
T PRK13826 434 AGKAAEGL 441 (1102)
T ss_pred cHHHHHHH
Confidence 97766554
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.14 Score=54.73 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCC---cEEEEcCCCCHHHHHHHHHHhhCCCC---cEEEEccc--ccccCCCCC--CCEEEEeCCCC----
Q psy6409 1689 DVLAKGLEKLGY---NACTLHGGKGQEQRELALNSLKGGSK---DILVATDV--AGRGIDIKD--VSMVINYDMAK---- 1754 (1832)
Q Consensus 1689 ~~l~~~L~~~~~---~v~~lHg~ls~~~R~~il~~F~~g~~---~VLVATdv--l~~GIDip~--v~~VI~~d~P~---- 1754 (1832)
+.++..+...+. ...++.-+....+...+++.|++..- .||+|+.- +++|||+|+ +..||...+|-
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~ 84 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPD 84 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCC
Confidence 344444544332 22233333333345778888886543 59998877 999999997 56888877763
Q ss_pred C---------------------------HHHHHHHhcccccCCCccEEEEEee
Q psy6409 1755 S---------------------------IEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1755 s---------------------------~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
+ +....|-+||+=|..+.--++++++
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 85 SPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1234688899999654433444443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.4 Score=56.85 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.0
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
.+++++++||+|+|||..+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCceEEEEecCCCcHHHHHH
Confidence 57899999999999997543
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.046 Score=68.03 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIG------LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~i------l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.+++-|..++..+ .++.++++.+|-|+|||..+- .+..++. ..+..++++|||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~-----------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLR-----------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhc-----------cccceEEEecchHHHHHhc
Confidence 3678899998888 577899999999999998642 2222221 2467899999996655443
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.15 Score=62.16 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=68.8
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc--chhHH-HHHHHHHHHhcCCCCCeEEEEEcC
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP--TRELA-QQIEEETNKFGTPLGIRTVLVVGG 842 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP--treLa-~Qi~~~~~~~~~~~~i~v~~~~Gg 842 (1832)
.-++++|++|+|||.+..-.+. ++. ..+.+++++.. .|.-| .|+...... +|+.+.....|
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~-----------~~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLK-----------KNGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHH-----------HcCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCC
Confidence 3488999999999986444332 221 12445555542 23433 444333433 45544322222
Q ss_pred CchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh-cCCChHHHHHHHHhCCCCCCCCCCchhHH
Q psy6409 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI-DMGFEPDVQKILEYMPVTNLKPDTEDAED 921 (1832)
Q Consensus 843 ~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~-d~gf~~~i~~Il~~l~~~~~~~~~~~~~~ 921 (1832)
...... +.+.+... ....+++|+||.|.++. +..+-..+..+...+.
T Consensus 205 ~dp~~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------- 252 (336)
T PRK14974 205 ADPAAV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------- 252 (336)
T ss_pred CCHHHH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC-------------
Confidence 211110 11222211 22457899999999875 2233444444433221
Q ss_pred HHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 922 ~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
+...++.++||........+..|.
T Consensus 253 ------------pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 253 ------------PDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred ------------CceEEEeeccccchhHHHHHHHHH
Confidence 234578889988776666666664
|
|
| >KOG0147|consensus | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.084 Score=65.24 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=9.0
Q ss_pred EEEEEcccchHHHHHHHHH
Q psy6409 1003 VIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 1003 vIVFv~s~~~~~~l~~~L~ 1021 (1832)
|-|=|.+...|......|.
T Consensus 493 VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 493 VYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred EEEecCcHHHHHHHHHHHh
Confidence 3333445555555555443
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.24 Score=59.03 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=82.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
-+|+..-+-.|.-|+..++... =|.+.++-|||||+.++-+.+...... ....++||.=|+..+.+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~---------~~y~KiiVtRp~vpvG~d-- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER---------KRYRKIIVTRPTVPVGED-- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH---------hhhceEEEecCCcCcccc--
Confidence 3578778889999999998753 377889999999999888887665442 235568888887665432
Q ss_pred HHHHHhcCCCCCeEEEEECCcchH---------HHHHHhhcCCcEEEeCHHHHHHHHHccccccCCc----------eeE
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSRE---------EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC----------TYI 1558 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~---------~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v----------~ll 1558 (1832)
+..+-|..... +....+.... =++-+.+..++....+.+..+ .+|
T Consensus 292 -------------IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~Fi 355 (436)
T COG1875 292 -------------IGFLPGTEEEKMGPWMQAIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFI 355 (436)
T ss_pred -------------cCcCCCchhhhccchHHHHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceE
Confidence 22233321111 0001111110 123455556655554433222 689
Q ss_pred EEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
|||||..|- ..++..|+++..
T Consensus 356 IIDEaQNLT----pheikTiltR~G 376 (436)
T COG1875 356 IIDEAQNLT----PHELKTILTRAG 376 (436)
T ss_pred EEehhhccC----HHHHHHHHHhcc
Confidence 999999874 667888888775
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.072 Score=55.65 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=16.5
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
+..++++||+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 45799999999999986544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG4368|consensus | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.027 Score=68.95 Aligned_cols=8 Identities=0% Similarity=-0.471 Sum_probs=3.8
Q ss_pred cceEEEEe
Q psy6409 195 RQTVMFTA 202 (1832)
Q Consensus 195 ~~~~~~~~ 202 (1832)
++++.|+.
T Consensus 338 ~P~~p~~~ 345 (757)
T KOG4368|consen 338 PPHCPPWN 345 (757)
T ss_pred CCCCCCCC
Confidence 34454444
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.4 Score=65.77 Aligned_cols=238 Identities=14% Similarity=0.095 Sum_probs=121.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
.+++-|.+|+..++.+ +-.++.|+-|+|||.+ +-.++..+ ...|..+++++||-.-|....+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-----------~~~G~~V~~lAPTgrAA~~L~e~~g~ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-----------SEQGYEIQIITAGSLSAQELRQKIPR 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-----------HhcCCeEEEEeCCHHHHHHHHHHhcc
Confidence 6899999999999986 4589999999999985 22333222 12477899999998877665543321
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
.+ .. .......+. ...-..|...++ .....+...++||||||-++. ...+..|+...
T Consensus 497 ~A-------~T------i~~~l~~l~--~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a 553 (1960)
T TIGR02760 497 LA-------ST------FITWVKNLF--NDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKA 553 (1960)
T ss_pred hh-------hh------HHHHHHhhc--ccccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHH
Confidence 10 00 000000000 011122333332 223345678999999999553 23344444433
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec--CCh----HHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT--MPP----AVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 981 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT--l~~----~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~ 981 (1832)
.. ...++|++-=+ +|. .+..++... .-|... ..........+ .+..
T Consensus 554 ~~------------------------~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~-l~~i~rq~~~v--~i~~ 605 (1960)
T TIGR02760 554 EQ------------------------HNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYA-WVDTKQQKASV--EISE 605 (1960)
T ss_pred hh------------------------cCCEEEEEcChhhcCccccchHHHHHHHC-CCcEEE-eecccccCcce--eeec
Confidence 21 12445544322 221 233333322 112221 11111111111 1111
Q ss_pred cchhhHHHHHHHHHHc-C-CCCCEEEEEcccchHHHHHHHHHH----cC------CcEEEEc-CCCCHHHHHHHHHHHhC
Q psy6409 982 LSEQDKRKKLMEVLNR-G-VKKPVIIFVNQKKGADVLAKGLEK----LG------YNACTLH-GGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 982 ~~~~~k~~~L~~~l~~-~-~~~~vIVFv~s~~~~~~l~~~L~~----~g------~~v~~lh-g~~~~~~R~~il~~F~~ 1048 (1832)
.....+...+.+.... . ....++||+.+..+...|....+. .| +.+..+. ..|+..++... ..|+.
T Consensus 606 ~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~ 684 (1960)
T TIGR02760 606 AVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQ 684 (1960)
T ss_pred cCchHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCC
Confidence 2223333344433322 2 233589999998888888777643 22 2233333 36777777744 77877
Q ss_pred CCC
Q psy6409 1049 GSK 1051 (1832)
Q Consensus 1049 G~~ 1051 (1832)
|..
T Consensus 685 Gdv 687 (1960)
T TIGR02760 685 GMV 687 (1960)
T ss_pred CCE
Confidence 753
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >KOG0151|consensus | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.025 Score=70.94 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=8.2
Q ss_pred ChHHHHHHHhhCCcCC
Q psy6409 155 FEPDVQKILEYMPVTN 170 (1832)
Q Consensus 155 f~~~~~~i~~~~~~~~ 170 (1832)
||+++-.||..|...+
T Consensus 513 FEa~L~~Ifd~l~~~y 528 (877)
T KOG0151|consen 513 FEATLEDIFDDLNDLY 528 (877)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
|
|
| >KOG0835|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.096 Score=60.78 Aligned_cols=55 Identities=27% Similarity=0.250 Sum_probs=26.3
Q ss_pred EcccCCcchhhHHHHhhhhchhHH----HHHHHHHhhcccCcEEEEEecccchhHHHhHHH
Q psy6409 271 IGSVGKPTERIEQIVYILSEQDKR----KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327 (1832)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1832)
++..++ ..|+-+-+++-+-=+| ..+++.|=....-.++..-.+++.+.+-+.+|.
T Consensus 210 ~Fd~~k--~eid~ic~~l~~lY~~~~p~~~li~~~vd~~k~~~~da~~k~~~~~ds~~~l~ 268 (367)
T KOG0835|consen 210 AFDTTK--REIDEICYRLIPLYKRAKPDETLIEAFVDRLKRKFSDASGKAKGANDSASLLG 268 (367)
T ss_pred HcCCcH--HHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhHHHHhccCCccchhhHHHhhc
Confidence 444433 4555555555553343 334444433333334445556666666444433
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.26 Score=52.59 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=38.0
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCC-CcEEEecccccccCCCcCc--CEEEEcCCC
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGS-KDILVATDVAGRGIDIKDV--SMVINYDMA 1078 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~-~~VLVaTdv~~rGlDip~v--~~VI~~d~p 1078 (1832)
.++.-+....+...+++.|+... ..||+||.-+++|||+|+- ..||..++|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 33444455556788888898654 3799999889999999984 578877766
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.25 Score=52.07 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997433
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.065 Score=60.34 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=24.4
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
-.++.||.|+|||..++--+.... ..+.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~------------~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYE------------ERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH------------HcCCeEEEEec
Confidence 368899999999987655444322 23667888866
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.1 Score=61.46 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHH
Q psy6409 1436 IGLQNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1436 ~il~g~dvii~ApTGSGKTla~~l 1459 (1832)
.+-.+.++++++|+|+|||..+.-
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH
Confidence 344678999999999999986544
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.32 Score=59.39 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred CCcEEEEecCCChHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ 782 (1832)
+.++++.||||+|||..+
T Consensus 183 ~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS 200 (329)
T ss_pred CCcEEEECCCCCcHHHHH
Confidence 578999999999999853
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.3 Score=58.26 Aligned_cols=133 Identities=19% Similarity=0.159 Sum_probs=81.3
Q ss_pred HcCCCCCcHHHHHHHHHHHcCC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
-.|+..-+..|.-|+..++.-. =|.+.|+-|||||+.++-+.+..... .....+++|.=|+..+...
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e---------~~~y~KiiVtRp~vpvG~d-- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE---------RKRYRKIIVTRPTVPVGED-- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH---------HhhhceEEEecCCcCcccc--
Confidence 3699889999999999999753 37888999999999998888876543 2235568887787655322
Q ss_pred HHHHHhcCCCCCeEEEEEcCCc---------hHHHHHHHhcCCceeecCHHHHHHHHHccccccCC----------ceeE
Q psy6409 823 EETNKFGTPLGIRTVLVVGGLS---------REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQ----------CTYI 883 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~~~Gg~~---------~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~----------~~~l 883 (1832)
++++-|... ..+....+.. .-=++.+.+...+.++.+.+.. =.||
T Consensus 292 -------------IGfLPG~eEeKm~PWmq~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~Fi 355 (436)
T COG1875 292 -------------IGFLPGTEEEKMGPWMQAIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFI 355 (436)
T ss_pred -------------cCcCCCchhhhccchHHHHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceE
Confidence 122222111 0001111111 1112345555555555442221 1589
Q ss_pred EEecchhhhcCCChHHHHHHHHhCC
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
|||||..|- ..++..|+.+..
T Consensus 356 IIDEaQNLT----pheikTiltR~G 376 (436)
T COG1875 356 IIDEAQNLT----PHELKTILTRAG 376 (436)
T ss_pred EEehhhccC----HHHHHHHHHhcc
Confidence 999999664 457777877764
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.16 Score=59.18 Aligned_cols=143 Identities=18% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhccc
Q psy6409 1397 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 1475 (1832)
Q Consensus 1397 ~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~ 1475 (1832)
.+|..+.+|+++++|+.+.+.+.. .+. ++|.+|||||||.. +-+|+.++.+.....-
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~-------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~~HI-- 157 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES-------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKAKHI-- 157 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC-------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCCcce--
Confidence 578899999999999888774431 122 78889999999976 5567777755221000
Q ss_pred ccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeC----HHHHHHHHHccccc
Q psy6409 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT----PGRLIDVLENRYLV 1551 (1832)
Q Consensus 1476 ~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaT----P~rl~~~l~~~~~~ 1551 (1832)
-.-..|.=.+-.+-+.|+.|- +++.. +. .-...-...++..+|||+.- .+.+.-.+ .
T Consensus 158 lTIEDPIE~vh~skkslI~QR-----EvG~d----T~-----sF~~aLraALReDPDVIlvGEmRD~ETi~~AL-----t 218 (353)
T COG2805 158 LTIEDPIEYVHESKKSLINQR-----EVGRD----TL-----SFANALRAALREDPDVILVGEMRDLETIRLAL-----T 218 (353)
T ss_pred EEecCchHhhhcchHhhhhHH-----Hhccc----HH-----HHHHHHHHHhhcCCCEEEEeccccHHHHHHHH-----H
Confidence 001122222233345555551 11110 00 00112234566677776531 22222222 1
Q ss_pred cCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1552 l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
....+.+||==.|.. +--..+.+|++.+|
T Consensus 219 AAETGHLV~~TLHT~---sA~~ti~RiidvFp 247 (353)
T COG2805 219 AAETGHLVFGTLHTN---SAAKTIDRIIDVFP 247 (353)
T ss_pred HHhcCCEEEEecccc---cHHHHHHHHHHhCC
Confidence 233456666666643 33556777777776
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.28 Score=51.61 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
+..+++.+|+|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999754
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.18 Score=62.87 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHH------HcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 750 EPTPIQRQAIPIG------LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 750 ~pt~iQ~~ai~~i------l~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
++++-|+.++..+ ..+.++++.|+-|+|||..+- .+..++ ...+..++++|||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~-----------~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYL-----------RSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHh-----------ccccceEEEecchHHHHHhc
Confidence 3678899998888 567889999999999998422 122222 12467899999998777665
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.53 Score=55.00 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.1
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..+++.|++|+|||..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997544
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.27 Score=52.47 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCC---cEEEeccc--ccccCCCcC--cCEEEEcCCCC----C--------------------------
Q psy6409 1038 QRELALNSLKGGSK---DILVATDV--AGRGIDIKD--VSMVINYDMAK----S-------------------------- 1080 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~---~VLVaTdv--~~rGlDip~--v~~VI~~d~p~----s-------------------------- 1080 (1832)
+...+++.|++..- .||+|+.- +++|||+|+ +..||..++|- +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44677888876543 69998877 999999998 46888777763 1
Q ss_pred -HhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1081 -IEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1081 -~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
+....|-+||+=|...+--++.|+
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEE
Confidence 123468889998876553334443
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.14 Score=56.89 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 731 ~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
...+|| ....+..+.|.....++...+..+. .++++++.||+|+|||..+..-+-..+..
T Consensus 9 ~~a~lp--~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~------------ 74 (178)
T PF01695_consen 9 KQAGLP--PDATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRK------------ 74 (178)
T ss_dssp ---------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT------------
T ss_pred cccccc--cccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC------------
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---------
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--------- 875 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--------- 875 (1832)
+..+++.+...|++.+.....
T Consensus 75 --------------------------------------------------g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~ 104 (178)
T PF01695_consen 75 --------------------------------------------------GYSVLFITASDLLDELKQSRSDGSYEELLK 104 (178)
T ss_dssp --------------------------------------------------T--EEEEEHHHHHHHHHCCHCCTTHCHHHH
T ss_pred --------------------------------------------------CcceeEeecCceeccccccccccchhhhcC
Q ss_pred ccCCceeEEEecc
Q psy6409 876 VLNQCTYIVLDEA 888 (1832)
Q Consensus 876 ~l~~~~~lViDEa 888 (1832)
.+..+++|||||.
T Consensus 105 ~l~~~dlLilDDl 117 (178)
T PF01695_consen 105 RLKRVDLLILDDL 117 (178)
T ss_dssp HHHTSSCEEEETC
T ss_pred ccccccEeccccc
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.4 Score=54.84 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=49.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE-EEEcC-cHHHHHHHHHHHHHhcCCCCCeEEEEECC
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA-IIMAP-TRELAQQIEEETNKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v-LiLaP-treLa~Qi~~~~~~~~~~~g~~v~~l~gg 1517 (1832)
+..+++++|||+|||.+..--+..+... ....+..| |+-+- .|.-+..+ ++.++..+|+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~--------~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~----- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGIN--------SDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVK----- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh--------hccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceE-----
Confidence 3578999999999998764433322111 00123333 33333 34444433 3444433444321
Q ss_pred cchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1518 ~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
++.++..+...+.. +.++++||||++.++.
T Consensus 238 ----------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 238 ----------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSP 267 (388)
T ss_pred ----------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCc
Confidence 12234444444432 4678999999999764
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.2 Score=58.28 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=13.2
Q ss_pred cEEEEecCCChHHHH
Q psy6409 767 DIIGVAETGSGKTLA 781 (1832)
Q Consensus 767 dvIv~apTGSGKTla 781 (1832)
.++++||+|+|||..
T Consensus 41 ~l~l~G~~G~GKThL 55 (229)
T PRK06893 41 FFYIWGGKSSGKSHL 55 (229)
T ss_pred eEEEECCCCCCHHHH
Confidence 479999999999974
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.13 Score=57.87 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=23.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
.++.+|+|+|||..++--+.... ..+.+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~------------~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYE------------ERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH------------HcCCeEEEEec
Confidence 57889999999987654444332 13667888866
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.17 Score=55.69 Aligned_cols=103 Identities=21% Similarity=0.125 Sum_probs=41.8
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH
Q psy6409 769 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848 (1832)
Q Consensus 769 Iv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~ 848 (1832)
|+.|+-|-|||.+..+.+-..+ ......++|.+|+.+-++.+.+.+..-+..++.+......+.. .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-----------~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~---~ 66 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-----------QKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQ---I 66 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-----------S-----EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-----------HhcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccc---c
Confidence 5789999999997666442111 1223579999999998888777666555544443300000000 0
Q ss_pred HHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 849 ~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
......+..|-+..|..+.. .....++||||||=.+.
T Consensus 67 ~~~~~~~~~i~f~~Pd~l~~-------~~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 67 IKLRFNKQRIEFVAPDELLA-------EKPQADLLIVDEAAAIP 103 (177)
T ss_dssp ------CCC--B--HHHHCC-------T----SCEEECTGGGS-
T ss_pred cccccccceEEEECCHHHHh-------CcCCCCEEEEechhcCC
Confidence 00011246677888876621 22346899999998543
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.3 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=15.8
Q ss_pred EEEEecCCChHHHHHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil 787 (1832)
++++||||+|||.+..--+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHH
Confidence 78999999999987554443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.11 Score=58.97 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=32.3
Q ss_pred CCCcccCcccCCCCHHHHH-HHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHH
Q psy6409 723 VPDPVRNWKEASLPTEILE-IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~-~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla 781 (1832)
+...|..|++++||+.+.+ ++.+.|. +|++|+|||||+..
T Consensus 103 I~~~IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTt 143 (375)
T COG5008 103 IETKIPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTT 143 (375)
T ss_pred hhccCCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhh
Confidence 3345668999999988776 5567777 99999999999976
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.45 Score=56.42 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHH
Q psy6409 1437 GLQNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1437 il~g~dvii~ApTGSGKTla~~ 1458 (1832)
+-.+.++++++|+|+|||..+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH
Confidence 4467899999999999997543
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.28 Score=66.81 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..++|-|.+|+.. ....++|.|..|||||.+..-=+...|.. .......+|+|+.|+..|.++.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~--------~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSV--------ENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999854 34679999999999999854444333311 1123457999999999999999999887
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---ccCCceeEEEecchh
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDEADR 890 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~---~l~~~~~lViDEaH~ 890 (1832)
.... ...+.|+|-..+...+.+... .+. -.+-|+|+.+.
T Consensus 73 ~~~~----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 73 LGTS----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred hccc----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 4210 124568898877654443321 111 13567888774
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.096 Score=54.67 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~l 1459 (1832)
+..+++.+|+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46789999999999987543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.079 Score=74.42 Aligned_cols=95 Identities=25% Similarity=0.379 Sum_probs=79.3
Q ss_pred CcEEEEECchhHHHHHHHHHHHcC-CcEEEEcCCCC-----------HHHHHHHHHHhhCCCCcEEEEcccccccCCCCC
Q psy6409 1676 KPVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKG-----------QEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1743 (1832)
Q Consensus 1676 ~~vIVFv~s~~~a~~l~~~L~~~~-~~v~~lHg~ls-----------~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~ 1743 (1832)
-..|+||+.+..+..+++.+.... +.+..+.|.+. +..+..++..|....+++|++|.++.+|+|+|.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 356999999999999988887652 33444555443 224678999999999999999999999999999
Q ss_pred CCEEEEeCCCCCHHHHHHHhcccccCC
Q psy6409 1744 VSMVINYDMAKSIEDYTHRIGRTGRAG 1770 (1832)
Q Consensus 1744 v~~VI~~d~P~s~~~yiQRiGRaGR~g 1770 (1832)
++.|+.++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997653
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.35 Score=64.80 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=53.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
..-..+++-|.+|+-. ...+++|.|..|||||.+.+--+...|.. ....+..+|+|+.|+..|..+.+++
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~--------~~~~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLAR--------GQAQPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHh--------CCCCHHHeEEEeccHHHHHHHHHHH
Confidence 3345799999999853 33568999999999999855444332211 1123558999999999999999888
Q ss_pred HHh
Q psy6409 826 NKF 828 (1832)
Q Consensus 826 ~~~ 828 (1832)
...
T Consensus 262 ~~~ 264 (684)
T PRK11054 262 RER 264 (684)
T ss_pred HHh
Confidence 775
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.85 Score=55.75 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=66.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC--c-HHHHHHHHHHHHHhcCCCCCeEEEEECC
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP--T-RELAQQIEEETNKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP--t-reLa~Qi~~~~~~~~~~~g~~v~~l~gg 1517 (1832)
.=+++++|+|+|||.+....+. ++.. .+..++++.. . ..-..|+......+ |+.+.....+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~-----------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK-----------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH-----------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCC
Confidence 3478899999999986443332 2222 2445655543 2 33445554444443 4433221111
Q ss_pred cchHHHHHHhhcCCcEEEeCHHH-HHHHHHccccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhh
Q psy6409 1518 LSREEQGFRLRLGCEIVIATPGR-LIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAE 1595 (1832)
Q Consensus 1518 ~~~~~~~~~l~~~~~IiVaTP~r-l~~~l~~~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~ 1595 (1832)
.. |.. +.+.+.. .....+++|+||.+.++.. ..+-..+..+...+.
T Consensus 205 ~d------------------p~~v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------ 252 (336)
T PRK14974 205 AD------------------PAAVAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------ 252 (336)
T ss_pred CC------------------HHHHHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------
Confidence 11 111 1122221 1124568999999997742 223344444443332
Q ss_pred hHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc
Q psy6409 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 1632 (1832)
Q Consensus 1596 ~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l 1632 (1832)
+...++.++||........+..|.
T Consensus 253 -------------pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 253 -------------PDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -------------CceEEEeeccccchhHHHHHHHHH
Confidence 223567788888766555555554
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.33 Score=66.12 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..++|-|.+|+... ...++|.|..|||||.+..-=+...+.. .......+|+|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~--------~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQV--------ENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999998643 4579999999999999754444333211 1123457999999999999999999886
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccc-cC-CceeEEEecchh
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LN-QCTYIVLDEADR 890 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~-l~-~~~~lViDEaH~ 890 (1832)
.... ...+.|+|--.+..-+.+.... +. .-.+-|+|+.+.
T Consensus 78 ~~~~----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 78 LGTS----------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred hccC----------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 4210 1235688988776554443211 11 123568888774
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.32 Score=60.83 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~l 783 (1832)
-|-......+..+..++++|++||+|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3455566667777789999999999999998764
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.18 Score=62.10 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.9
Q ss_pred cCCcEEEEecCCChHHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil 787 (1832)
.|..++++||||+|||.....-+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466799999999999997655443
|
|
| >KOG0796|consensus | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.06 Score=62.80 Aligned_cols=39 Identities=38% Similarity=0.534 Sum_probs=25.4
Q ss_pred HHhhhccccCCcceEEEEcccc--------hhhcCCChHHHHHHHhhC
Q psy6409 127 DVLENRYLVLNQCTYIVLDEAD--------RMIDMGFEPDVQKILEYM 166 (1832)
Q Consensus 127 ~~~~~~~~~l~~~~~~vlDEad--------~~l~~gf~~~~~~i~~~~ 166 (1832)
|++.+-...|-.|. -|-|+++ +=.++||+-+...+++.+
T Consensus 45 DlF~nTk~dlg~C~-kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~~~ 91 (319)
T KOG0796|consen 45 DLFQNTKMDLGPCP-KVHDEALKADYERASKERDYGYEWDALEILERF 91 (319)
T ss_pred HHhhhhhcccCccc-chhhHHHHHHHhhchHhhhhhhhHHHHHHHHHH
Confidence 34444444555443 6667664 456899999988888876
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.35 Score=56.96 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
++.++++.+|+|+|||..+.......+ . ...-++++++-+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~------------~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K------------AGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H------------cCCeEEEEEHHHHHHHHHHHHhc
Confidence 678999999999999987543333222 2 23355566777888776555443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.50 E-value=2.6 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=17.4
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
++.++++||||+|||.+...-+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998655433
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.44 Score=56.55 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.6
Q ss_pred CcEEEEecCCChHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLP 785 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llp 785 (1832)
.++++.||+|+|||.++-+-
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 46999999999999876543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0670|consensus | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.1 Score=64.09 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhcCCCC
Q psy6409 817 LAQQIEEETNKFGTPLG 833 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~ 833 (1832)
|.+...+++++++...|
T Consensus 516 LslNLRevLKKyG~nvG 532 (752)
T KOG0670|consen 516 LSLNLREVLKKYGRNVG 532 (752)
T ss_pred hhchHHHHHHHhCcccc
Confidence 34444444455444433
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.23 Score=58.42 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=33.4
Q ss_pred cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
++.++++.||+|+|||..+.--. ..+. ....-++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~------------~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELL------------KAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHH------------HcCCeEEEEEHHHHHHHHHHHHhc
Confidence 56799999999999998644322 2221 123445567788888876655543
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.2 Score=59.76 Aligned_cols=62 Identities=27% Similarity=0.277 Sum_probs=46.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~gr-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
..|...++-|...+..+..++ |++++|.||||||+ +|-++. .. ....-+++++--|-||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~---~~--------i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALS---GF--------IDSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHH---hc--------CCCcccEEEEeehhhhccC
Confidence 357889999999999999876 99999999999998 232221 10 1123389999999888544
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.35 Score=56.33 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=13.9
Q ss_pred CcEEEEecCCChHHHH
Q psy6409 766 RDIIGVAETGSGKTLA 781 (1832)
Q Consensus 766 rdvIv~apTGSGKTla 781 (1832)
..++++||+|+|||-.
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999974
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.1 Score=52.31 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
..+++.+++|+|||..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997643
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.52 Score=61.25 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|.|+|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|+..-|..+.+.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 4778898888877666667788888999999877655543321 235689999999999999888887654
Q ss_pred CCCCC--eEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 830 TPLGI--RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 830 ~~~~i--~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
..++. ... +... ......+.+|..|.+.|-+. +...-.+..++|+||+|.+.
T Consensus 129 e~~P~l~~~~-i~~~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 129 ELLPDFLQPG-IVEW---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred HhCHHHhhcc-eeec---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC
Confidence 43221 111 0100 01112234456665544210 11122356789999999654
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.5 Score=55.68 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred cEEEEecCCChHHHHH
Q psy6409 767 DIIGVAETGSGKTLAF 782 (1832)
Q Consensus 767 dvIv~apTGSGKTla~ 782 (1832)
-+++|||.|+|||+.+
T Consensus 547 GvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLA 562 (802)
T ss_pred ceEEeCCCCccHHHHH
Confidence 3999999999999853
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.5 Score=64.05 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcC
Q psy6409 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830 (1832)
Q Consensus 751 pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~ 830 (1832)
++|-|.+++.. ...+++|.|..|||||.+.+--+...+.. .......+|+|+.|+..|.++...+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--------~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN--------CGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--------cCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899998754 35689999999999999755555443321 012345799999999999999999887642
Q ss_pred CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccc-cC-CceeEEEecchh
Q psy6409 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LN-QCTYIVLDEADR 890 (1832)
Q Consensus 831 ~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~-l~-~~~~lViDEaH~ 890 (1832)
.. ....|.|+|-.+|...+.+.... +. .-.+-|+|+.+.
T Consensus 72 ~~---------------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 72 KG---------------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred cc---------------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 10 02356788988887555443211 11 123567888774
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.99 Score=53.64 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCcEEEEecCCChHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ 782 (1832)
+.++++.|+||+|||..+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567999999999999753
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.2 Score=47.90 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=23.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
++++||+|+|||......+.... ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~------------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA------------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH------------hcCCEEEEEECCcch
Confidence 68999999999986544332211 135567777655443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.47 Score=56.25 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=53.8
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH-HHhcCCCCCeEEEEEcCCc
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET-NKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~-~~~~~~~~i~v~~~~Gg~~ 844 (1832)
.+++++|+||.|||.+. -.+...+|.... .....-|.+++-+|...=..-.+..+ ..++.+..- .
T Consensus 62 p~lLivG~snnGKT~Ii----~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII----ERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------R- 127 (302)
T ss_pred CceEEecCCCCcHHHHH----HHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------C-
Confidence 47999999999999842 122223333221 11223467777778766554444443 333333211 0
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCCh
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.+...+...+. ..+.--.+++|||||.|.++.....
T Consensus 128 ----------------~~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs~~ 163 (302)
T PF05621_consen 128 ----------------DRVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGSYR 163 (302)
T ss_pred ----------------CCHHHHHHHHH-HHHHHcCCcEEEeechHHHhcccHH
Confidence 01111111111 1223456799999999999875533
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.38 Score=58.50 Aligned_cols=67 Identities=28% Similarity=0.361 Sum_probs=44.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
+..+.+.|+ +++.|.+.+..+. .+++++++|+||||||. ++-.++..+.. .....+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~---------~~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVI---------QDPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhh---------cCCCceEEEEcCCCccc
Confidence 445555666 5677888887655 46899999999999995 34445443311 12345788888888873
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.37 Score=56.73 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=63.4
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCc--------CEEEEcCCCCCHhHHHHHhcccccCCCC-cEEEEEecCC---C
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDV--------SMVINYDMAKSIEDYTHRIGRTGRAGKE-GLAVSFCTKD---D 1108 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v--------~~VI~~d~p~s~~~yvQr~GRaGR~g~~-G~ai~~~~~~---d 1108 (1832)
...+.|.+|+..|+|.|+.++.||.+.+- .+-|...+|.|....+|.+||+-|.|+. .-.+.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 45678999999999999999999988642 3556788999999999999999999874 5556666555 5
Q ss_pred chHHHHHHHHHhc
Q psy6409 1109 SHLFYDLKQMMIS 1121 (1832)
Q Consensus 1109 ~~~~~~l~~~l~~ 1121 (1832)
..+...+.+-|..
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 5666666665543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.2 Score=48.15 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
+++.+|+|+|||......+.... ..+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~------------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA------------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH------------hcCCEEEEEECCcch
Confidence 68899999999986544333221 135567777664443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.41 Score=49.83 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.5
Q ss_pred EEEEecCCChHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFL 783 (1832)
Q Consensus 768 vIv~apTGSGKTla~l 783 (1832)
+++.||.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999998543
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.45 Score=55.55 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.1
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..++++||+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997533
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.57 Score=57.19 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
.+.++++.+|||+|||..+. +|...+.. .+..|+|+ +..+|+.++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~-----------~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD-----------RGKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCeEEEE-EHHHHHHHHH
Confidence 35789999999999998543 33333321 24455554 4456655543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.44 Score=55.36 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~ 1457 (1832)
.+++++|+|+|||...
T Consensus 41 ~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 41 FFYIWGGKSSGKSHLL 56 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4799999999999754
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=91.76 E-value=5.8 Score=59.57 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
.+++-|.+|+..++... =.++.++.|+|||.+. -.++..+. ..|..+++++||-.-+..+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~-----------~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLAS-----------EQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHH-----------hcCCeEEEEeCCHHHHHHHHH
Confidence 68999999999998764 4788899999999753 33333332 247789999999876665544
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=3.8 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=18.2
Q ss_pred cCCcEEEEecCCChHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpi 786 (1832)
.+..+.+++++|+|||..+.+-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999766544
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.32 Score=65.56 Aligned_cols=110 Identities=20% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.+++-|.+|+.. ....++|+|+.|||||.+.+--+...|.. ......++|+|+.|+..|.++..++..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~--------~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG--------CGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--------cCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999864 34678999999999999855555443321 01234579999999999999999988763
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccC-CceeEEEecchh
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLN-QCTYIVLDEADR 890 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~-~~~~lViDEaH~ 890 (1832)
... ....+.|+|.-.|...+.+... .+. .-.+-|+|+.+.
T Consensus 72 ~~~---------------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 72 GRK---------------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred Ccc---------------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 210 0124668888877644433221 111 124567787763
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.51 Score=57.28 Aligned_cols=65 Identities=22% Similarity=0.171 Sum_probs=43.6
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
.+.+.|+ .++.|...|..+.. +.++|++|+||||||.. +-.++..+.. ...+-+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~---------~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVA---------SAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhc---------CCCCceEEEecCCcccc
Confidence 3445555 56788888777665 67999999999999974 3334443321 11245788888888874
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.7 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCChHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpi 786 (1832)
.++.++++||||+|||....--+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998655444
|
|
| >KOG0701|consensus | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.14 Score=71.98 Aligned_cols=95 Identities=25% Similarity=0.387 Sum_probs=78.7
Q ss_pred CEEEEEcccchHHHHHHHHHHcC-CcEEEEcCCCC-----------HHHHHHHHHHHhCCCCcEEEecccccccCCCcCc
Q psy6409 1002 PVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKG-----------QEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069 (1832)
Q Consensus 1002 ~vIVFv~s~~~~~~l~~~L~~~g-~~v~~lhg~~~-----------~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v 1069 (1832)
..|+||+.+..+..+++.+.... ..+..+.|.+. ...+..++..|....+++|++|.++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 36899999999988888887653 23333444432 2336789999999999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1070 SMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1070 ~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
+.|+.++.|.....|+|..||+-+++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccchh
Confidence 999999999999999999999977653
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.58 Score=58.67 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~ 1458 (1832)
|-......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666777789999999999999998764
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=4.1 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPL 1461 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpi 1461 (1832)
.+.+++++|||+|||.....-+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3578999999999998754443
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.9 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=17.1
Q ss_pred CcEEEEecCCChHHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil 787 (1832)
.-++++||||+|||....--+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999997665443
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.72 Score=58.82 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=47.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
|+-+.++||||+|||++...-.-.+... .+....+|+-+-+ |.-|.++ +..++..+|+.+.......
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---------~G~~kV~LI~~Dt~RigA~EQ---Lr~~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR---------HGASKVALLTTDSYRIGGHEQ---LRIYGKILGVPVHAVKDAA 323 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh---------cCCCeEEEEeCCccchhHHHH---HHHHHHHhCCCeeccCCch
Confidence 4558899999999999765544322111 0111233444333 4444443 3333334455554444443
Q ss_pred chHHHHHHHhcCCceeecCHHHH
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRL 866 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL 866 (1832)
........+...-.++|-|+|+.
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcC
Confidence 33333444444567889999855
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.63 Score=63.50 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..++|-|.+|+.. ....++|.|..|||||.+..--+...+.. .......+|+|+.|+..|.++...+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~--------~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSV--------ENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999854 34689999999999999865555444422 1123456999999999999999999886
Q ss_pred c
Q psy6409 1504 G 1504 (1832)
Q Consensus 1504 ~ 1504 (1832)
.
T Consensus 73 ~ 73 (715)
T TIGR01075 73 L 73 (715)
T ss_pred h
Confidence 4
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.54 Score=55.77 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=54.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCCeEEEEECCcc
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~~v~~l~gg~~ 1519 (1832)
.+++++++||.|||.+.. .+....|.... .....-|.+++-+|...=..-.+..+- .++.+..-+ .
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------~- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------D- 128 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC-------C-
Confidence 589999999999998531 22223333221 122234777888886655544444443 333221110 0
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChH
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
+...+..... ..+.--.+.+|||||+|+++......
T Consensus 129 -----------------~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs~~~ 164 (302)
T PF05621_consen 129 -----------------RVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGSYRK 164 (302)
T ss_pred -----------------CHHHHHHHHH-HHHHHcCCcEEEeechHHHhcccHHH
Confidence 1111111111 12234568999999999998766443
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.58 Score=54.53 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=13.4
Q ss_pred cEEEEecCCChHHHH
Q psy6409 767 DIIGVAETGSGKTLA 781 (1832)
Q Consensus 767 dvIv~apTGSGKTla 781 (1832)
-++++||+|+|||-.
T Consensus 43 ~l~l~G~~G~GKThL 57 (233)
T PRK08727 43 WLYLSGPAGTGKTHL 57 (233)
T ss_pred eEEEECCCCCCHHHH
Confidence 499999999999964
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.2 Score=52.94 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
+.++++.+++|+|||..+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 578999999999999754
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.4 Score=58.27 Aligned_cols=141 Identities=22% Similarity=0.213 Sum_probs=84.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1415 l~~l~~~g~~~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
-..+.....+.+..-|.+.+..++..+ -+++.|.-|=|||.+.-|.+...... .....++|.+|+.+=
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~----------~~~~~iiVTAP~~~n 273 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL----------AGSVRIIVTAPTPAN 273 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh----------cCCceEEEeCCCHHH
Confidence 344666666777777777888888654 58889999999999988777432211 114579999999988
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEC--CcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC
Q psy6409 1493 AQQIEEETNKFGTPLGIRTVLVVG--GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1493 a~Qi~~~~~~~~~~~g~~v~~l~g--g~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g 1570 (1832)
++.+..-+.+-...+|.+--.... |.... . -.....|=+-+|... . ...++||||||=-|-
T Consensus 274 v~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~-~---~~~~~~i~y~~P~~a---------~-~~~DllvVDEAAaIp--- 336 (758)
T COG1444 274 VQTLFEFAGKGLEFLGYKRKVAPDALGEIRE-V---SGDGFRIEYVPPDDA---------Q-EEADLLVVDEAAAIP--- 336 (758)
T ss_pred HHHHHHHHHHhHHHhCCccccccccccceee-e---cCCceeEEeeCcchh---------c-ccCCEEEEehhhcCC---
Confidence 877666665544444432111111 10000 0 001122444555532 1 127899999998542
Q ss_pred ChHHHHHHHHhCC
Q psy6409 1571 FEPDVQKILEYMP 1583 (1832)
Q Consensus 1571 f~~~l~~Il~~l~ 1583 (1832)
-+-+..++...+
T Consensus 337 -lplL~~l~~~~~ 348 (758)
T COG1444 337 -LPLLHKLLRRFP 348 (758)
T ss_pred -hHHHHHHHhhcC
Confidence 566666666543
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.71 Score=63.00 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..++|-|.+|+.. ....++|.|..|||||.+..--+...+.. .......+|+|+-|+..|.++.+.+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~--------~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQV--------ENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3689999999863 34689999999999998865555544422 1123456999999999999999999886
Q ss_pred c
Q psy6409 1504 G 1504 (1832)
Q Consensus 1504 ~ 1504 (1832)
.
T Consensus 78 ~ 78 (721)
T PRK11773 78 L 78 (721)
T ss_pred h
Confidence 4
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.28 Score=60.62 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHH
Q psy6409 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 790 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i 790 (1832)
+|..+.+++++++|+.+.+.+.. .+..++++||||||||... -.++.++
T Consensus 110 l~~~~~~l~~l~~~~~~~~~~~~------------------~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 110 IPAEPPKLSKLDLPAAIIDAIAP------------------QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCCCCCHHHcCCCHHHHHHHhc------------------cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 44555567777777655443321 3455999999999999853 3344443
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.68 Score=53.51 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
+..++++||+|+|||. ||..++..+..-
T Consensus 38 ~~~lll~G~~G~GKT~------------------------------------la~~~~~~~~~~---------------- 65 (226)
T TIGR03420 38 DRFLYLWGESGSGKSH------------------------------------LLQAACAAAEER---------------- 65 (226)
T ss_pred CCeEEEECCCCCCHHH------------------------------------HHHHHHHHHHhc----------------
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHH
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDEN 923 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~ 923 (1832)
+..+++.+-..+......-.-.+...++|||||+|.+... +....+..++..+.
T Consensus 66 ----------~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~--------------- 120 (226)
T TIGR03420 66 ----------GKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVR--------------- 120 (226)
T ss_pred ----------CCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---------------
Q ss_pred HHHHhhccccccceEEEEEecCCh
Q psy6409 924 KLLANYNSKKKYRQTVMFTATMPP 947 (1832)
Q Consensus 924 ~ll~~~~~~~~~~q~v~~SATl~~ 947 (1832)
.....++++++.+.
T Consensus 121 ----------~~~~~iIits~~~~ 134 (226)
T TIGR03420 121 ----------EAGGRLLIAGRAAP 134 (226)
T ss_pred ----------HcCCeEEEECCCCh
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.81 Score=53.32 Aligned_cols=17 Identities=24% Similarity=0.136 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
..+++.+|+|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999654
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.69 Score=56.77 Aligned_cols=89 Identities=28% Similarity=0.373 Sum_probs=52.2
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
++.+.++||||.|||+.-+--+..+.. .......+||..-| |-=|..+ ++.++.-+|+.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~---------~~~~~kVaiITtDtYRIGA~EQ---Lk~Ya~im~vp~~------ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM---------LKKKKKVAIITTDTYRIGAVEQ---LKTYADIMGVPLE------ 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh---------hccCcceEEEEeccchhhHHHH---HHHHHHHhCCceE------
Confidence 788999999999999864433333321 11234456666655 4444443 3333333454433
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
+|-+|.-|.+.+. .+.+|++|.+|=|-+
T Consensus 265 ---------------vv~~~~el~~ai~----~l~~~d~ILVDTaGr 292 (407)
T COG1419 265 ---------------VVYSPKELAEAIE----ALRDCDVILVDTAGR 292 (407)
T ss_pred ---------------EecCHHHHHHHHH----HhhcCCEEEEeCCCC
Confidence 3455655555443 577788888887764
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.79 Score=65.97 Aligned_cols=123 Identities=19% Similarity=0.105 Sum_probs=78.9
Q ss_pred CcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcC
Q psy6409 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830 (1832)
Q Consensus 751 pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~ 830 (1832)
.|+-|.+||. ..+.+++|.|.-|||||.+.+--++..+... ..-..+|+|+=|+..|.++..++.+.+.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5889999997 3688999999999999998766666555321 1224699999999999998888876532
Q ss_pred CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc--eeEEEecchh
Q psy6409 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC--TYIVLDEADR 890 (1832)
Q Consensus 831 ~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~--~~lViDEaH~ 890 (1832)
..--. -........| +..-...-|+|-..+...+.+.....-.+ .+=|+||...
T Consensus 71 ~~~~~---~p~~~~L~~q---~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KALQQ---EPNSKHLRRQ---LALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHhc---CchhHHHHHH---HhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11000 0000111112 22234567899888876555544332223 5667998875
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.78 Score=53.48 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q psy6409 1441 RDIIGVAETGSGKTLA 1456 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla 1456 (1832)
..+++++|+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999975
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.1 Score=52.45 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=27.7
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.++++.||+|+|||..+.. |...+. ..+..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~-----------~~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLL-----------AKGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH-----------HcCCCe-EEEEHHHHHHHHHHH
Confidence 5799999999999975433 333321 123334 444556776665443
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.27 E-value=2.2 Score=50.71 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhh
Q psy6409 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-----------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798 (1832)
Q Consensus 730 f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-----------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~ 798 (1832)
+..+++++.+.+.=-+.-. .++-+..++..+. .+..+++.|++|+|||..+. .|.+.+..
T Consensus 70 ~~~s~i~~~~~~~tFdnf~--~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~------ 140 (268)
T PRK08116 70 KSNSLLDEKFRNSTFENFL--FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIE------ 140 (268)
T ss_pred HHhcCCCHHHHhcchhccc--CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHH------
Q ss_pred ccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC
Q psy6409 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878 (1832)
Q Consensus 799 ~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~ 878 (1832)
....++..+..+|...+...+..- +......... .+.
T Consensus 141 ------~~~~v~~~~~~~ll~~i~~~~~~~-------------~~~~~~~~~~------------------------~l~ 177 (268)
T PRK08116 141 ------KGVPVIFVNFPQLLNRIKSTYKSS-------------GKEDENEIIR------------------------SLV 177 (268)
T ss_pred ------cCCeEEEEEHHHHHHHHHHHHhcc-------------ccccHHHHHH------------------------Hhc
Q ss_pred CceeEEEecc--hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 879 QCTYIVLDEA--DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 879 ~~~~lViDEa--H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
.+++||||+. +...++.....+.-|-.+.. ....+|+.|-..|..+..
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~-------------------------~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYR-------------------------KGLPTIVTTNLSLEELKN 227 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHH-------------------------CCCCEEEECCCCHHHHHH
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.27 E-value=2.6 Score=55.92 Aligned_cols=138 Identities=22% Similarity=0.223 Sum_probs=83.3
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
.+.....+.+..-|.+.+..++.+ +-+++.|.-|=|||.+.-|.+. .+.. . .....++|.+|+.+-++
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~------~---~~~~~iiVTAP~~~nv~ 275 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAAR------L---AGSVRIIVTAPTPANVQ 275 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHH------h---cCCceEEEeCCCHHHHH
Confidence 355555666666666677777764 3588999999999999887773 2211 1 11468999999999888
Q ss_pred HHHHHHHHhcCCCCCeEEEEEc--CCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCCh
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVG--GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~G--g~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.+..-+.+-+..+|.+-..... |.... .-.....|-+-+|... . ...++||||||=-+. -
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a---------~-~~~DllvVDEAAaIp----l 337 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDALGEIRE----VSGDGFRIEYVPPDDA---------Q-EEADLLVVDEAAAIP----L 337 (758)
T ss_pred HHHHHHHHhHHHhCCccccccccccceee----ecCCceeEEeeCcchh---------c-ccCCEEEEehhhcCC----h
Confidence 8777766655555543221111 11100 0001233556666544 1 126899999998543 3
Q ss_pred HHHHHHHHhC
Q psy6409 898 PDVQKILEYM 907 (1832)
Q Consensus 898 ~~i~~Il~~l 907 (1832)
|.+..++...
T Consensus 338 plL~~l~~~~ 347 (758)
T COG1444 338 PLLHKLLRRF 347 (758)
T ss_pred HHHHHHHhhc
Confidence 4555555443
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=1 Score=65.40 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
..+++.|.+|+..++.+ +-++|.|..|+|||.+. -.++..+..+ ....+..++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l-------~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL-------PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh-------hcccCceEEEECCcHHHHHHH
Confidence 37899999999999985 46999999999999863 2333332211 112456799999998877654
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.6 Score=56.39 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.5
Q ss_pred cE-EEEcCCCchHHHHHHH
Q psy6409 1442 DI-IGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1442 dv-ii~ApTGSGKTla~~l 1459 (1832)
++ +|.++||+|||++.-.
T Consensus 782 nvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYS 800 (1164)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 44 5999999999998543
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=2.2 Score=54.15 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=16.8
Q ss_pred CcEEEEecCCChHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpi 786 (1832)
..++++|++|+|||.+..--+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 458899999999998765544
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.18 Score=55.50 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH
Q psy6409 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523 (1832)
Q Consensus 1444 ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~ 1523 (1832)
++.|+-|-|||.+..+.+...+.. ....++|.+|+.+=++.+.+.+..-...++++............-
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------------EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccccccc
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhh
Q psy6409 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603 (1832)
Q Consensus 1524 ~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~ 1603 (1832)
... +..|-+..|+.+ .......++||||||=.+- -+.+..++...+
T Consensus 70 ~~~---~~~i~f~~Pd~l-------~~~~~~~DlliVDEAAaIp----~p~L~~ll~~~~-------------------- 115 (177)
T PF05127_consen 70 RFN---KQRIEFVAPDEL-------LAEKPQADLLIVDEAAAIP----LPLLKQLLRRFP-------------------- 115 (177)
T ss_dssp ------CCC--B--HHHH-------CCT----SCEEECTGGGS-----HHHHHHHHCCSS--------------------
T ss_pred ccc---cceEEEECCHHH-------HhCcCCCCEEEEechhcCC----HHHHHHHHhhCC--------------------
Q ss_pred hccccCcceEEEEEccC
Q psy6409 1604 YNSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1604 ~~~~~~~~q~v~~SATl 1620 (1832)
.++||.|.
T Consensus 116 ---------~vv~stTi 123 (177)
T PF05127_consen 116 ---------RVVFSTTI 123 (177)
T ss_dssp ---------EEEEEEEB
T ss_pred ---------EEEEEeec
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.71 Score=60.08 Aligned_cols=121 Identities=18% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|.|+|...+..+..++-.++..+=..|||.+....++.+... ..+..+++++|+..-|..+.+.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH 1564 (1832)
..+..-.. .+-.........+.+|+.|.+.|.. .+...-.+..++|+||+|
T Consensus 129 e~~P~l~~--~~i~~~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a 179 (534)
T PHA02533 129 ELLPDFLQ--PGIVEWNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECA 179 (534)
T ss_pred HhCHHHhh--cceeecCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccc
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.2 Score=52.98 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHcC---CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC
Q psy6409 756 RQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832 (1832)
Q Consensus 756 ~~ai~~il~g---rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~ 832 (1832)
..++..++.| .|+++.|+||+|||.+.-. +.+.+..-....
T Consensus 30 ~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~------------------------------------v~~~l~~~~~~~ 73 (366)
T COG1474 30 ASFLAPALRGERPSNIIIYGPTGTGKTATVKF------------------------------------VMEELEESSANV 73 (366)
T ss_pred HHHHHHHhcCCCCccEEEECCCCCCHhHHHHH------------------------------------HHHHHHhhhccC
Q ss_pred CCeEEEEEcCCchHHHHHHHhc---CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRL---GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~---~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
..--+-+....+...-...+.. +..-.-..-..+...+..........-+||+||+|.|.+..- ..+-.|+..
T Consensus 74 ~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 74 EVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred ceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhh
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=89.93 E-value=1 Score=50.27 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
+++.||+|+|||...+--+...+.. |..++|+ .+-+-..++.+.+..++-..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~------------g~~v~~~-s~e~~~~~~~~~~~~~g~~~--------------- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR------------GEPGLYV-TLEESPEELIENAESLGWDL--------------- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC------------CCcEEEE-ECCCCHHHHHHHHHHcCCCh---------------
Q ss_pred HHHHHhcCCceeecCHHHHHH----------HHHccccccCCceeEEEecchhhhc---CCChHHHHHHHHhC
Q psy6409 848 QGFRLRLGCEIVIATPGRLID----------VLENRYLVLNQCTYIVLDEADRMID---MGFEPDVQKILEYM 907 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d----------~l~~~~~~l~~~~~lViDEaH~l~d---~gf~~~i~~Il~~l 907 (1832)
..........++=..|..+.. ........-...++|||||...+++ ......+..++..+
T Consensus 54 ~~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 54 ERLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred HHHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
|
A related protein is found in archaea. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.2 Score=51.42 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCC
Q psy6409 1430 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509 (1832)
Q Consensus 1430 Q~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~ 1509 (1832)
+.+.+-..-.+.++++.+|+|+|||..+....-.....
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~------------------------------------------ 65 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER------------------------------------------ 65 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc------------------------------------------
Q ss_pred eEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcC-CChHHHHHHHHhCCCCCCC
Q psy6409 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLK 1588 (1832)
Q Consensus 1510 ~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~-gf~~~l~~Il~~l~~~~~~ 1588 (1832)
+..+++.+-..+........-.+...++|||||+|.+... .....+..++..+.
T Consensus 66 --------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~----- 120 (226)
T TIGR03420 66 --------------------GKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVR----- 120 (226)
T ss_pred --------------------CCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHH-----
Q ss_pred CCCchhhhHHHHHhhhccccCcceEEEEEccCCh
Q psy6409 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622 (1832)
Q Consensus 1589 ~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~ 1622 (1832)
.....+++|++.+.
T Consensus 121 --------------------~~~~~iIits~~~~ 134 (226)
T TIGR03420 121 --------------------EAGGRLLIAGRAAP 134 (226)
T ss_pred --------------------HcCCeEEEECCCCh
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.2 Score=60.58 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.++|-|.+++.. ...+++|.|..|||||.+.+--+...+.. .......+|+|+.|+..|.++...+.+..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--------~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN--------CGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--------cCCCHHHeEEEeccHHHHHHHHHHHHHHh
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCce--eEEEccchh
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT--YIVLDEADR 1565 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~--llViDEaH~ 1565 (1832)
...+ ...|.|+|-.+|...+-+.......+. +-|+|+.+.
T Consensus 71 ~~~~---------------------~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 71 GKGE---------------------ARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred Cccc---------------------cCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.26 Score=62.09 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred cEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcCC
Q psy6409 26 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 89 (1832)
Q Consensus 26 d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~ 89 (1832)
+++++|+||||||.+|++|.|. .-...++|+-|--||........++.|.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--------------~~~~s~vv~D~Kge~~~~t~~~r~~~G~ 50 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--------------TWPGSVVVLDPKGENFELTSEHRRALGR 50 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--------------cCCCCEEEEccchhHHHHHHHHHHHcCC
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1832 | ||||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 4e-78 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-76 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-76 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 4e-52 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 4e-52 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-47 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-47 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 3e-47 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 3e-47 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 3e-47 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 3e-47 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 5e-47 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 5e-47 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 6e-47 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 6e-47 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 6e-47 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 6e-47 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 6e-47 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 6e-47 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 9e-47 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 9e-47 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-46 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-46 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 3e-44 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 3e-44 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 6e-44 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 6e-44 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-43 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-43 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 3e-43 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 3e-43 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 4e-42 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 4e-42 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 4e-42 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 4e-42 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 2e-41 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 2e-41 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 3e-41 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 3e-41 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 1e-39 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 2e-39 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 2e-39 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 3e-39 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 3e-39 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-39 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-39 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 4e-39 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 4e-39 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 8e-39 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 8e-39 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 8e-39 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 8e-39 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 7e-37 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 8e-36 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 6e-34 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 6e-34 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 6e-34 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 6e-34 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 6e-34 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 6e-34 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 7e-34 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 7e-34 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 1e-31 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 1e-31 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 3e-31 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 3e-31 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 6e-29 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-26 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-25 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 1e-25 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 2e-25 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 2e-25 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 3e-24 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 3e-24 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 1e-23 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 1e-23 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 3e-22 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 3e-22 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 2e-21 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 2e-21 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 2e-21 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 2e-21 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 4e-21 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 1e-20 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 6e-21 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 6e-21 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 3e-20 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 3e-20 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 4e-20 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 4e-20 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 2e-19 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 2e-19 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 4e-19 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 4e-19 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 1e-17 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 1e-17 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 1e-17 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 2e-17 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 2e-17 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 9e-17 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 9e-17 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 1e-16 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 1e-16 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 3e-15 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 3e-15 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 3e-14 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 3e-14 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 3e-12 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 3e-12 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 6e-12 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 8e-12 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 8e-12 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 1e-11 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 1e-11 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 7e-11 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 7e-11 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 1e-10 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 1e-10 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 1e-10 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 1e-10 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 1e-10 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 1e-10 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 5e-10 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 5e-10 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 3e-09 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 3e-09 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 5e-08 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 8e-08 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 1e-06 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 1e-06 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 6e-05 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 6e-05 |
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 572 bits (1476), Expect = 0.0
Identities = 167/437 (38%), Positives = 236/437 (54%), Gaps = 32/437 (7%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDAD---------QGPYAIIMAPTRELAQQIEEETN 1501
SGKT AFLLP+L I S + Q P ++++APTRELA QI EE
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 1502 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561
KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y+VLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 1621
EADRM+DMGFEP +++I+E + P R T+MF+AT P
Sbjct: 183 EADRMLDMGFEPQIRRIVEQD---TMPPKGV------------------RHTMMFSATFP 221
Query: 1622 PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVII 1680
++ LAR +L + +G VG +E I Q V + E DKR L+++LN G ++
Sbjct: 222 KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLV 281
Query: 1681 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1740
FV KKGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+D
Sbjct: 282 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341
Query: 1741 IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS 1800
I +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 342 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-Q 400
Query: 1801 TCPPELLNHPDAQHKPG 1817
P L N H G
Sbjct: 401 EVPSWLENMAYEHHYKG 417
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 561 bits (1448), Expect = 0.0
Identities = 162/417 (38%), Positives = 231/417 (55%), Gaps = 31/417 (7%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDAD---------QGPYAIIMAPTRELAQQIEEETN 826
SGKT AFLLP+L I S + Q P ++++APTRELA QI EE
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886
KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y+VLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 946
EADRM+DMGFEP +++I+E + P R T+MF+AT P
Sbjct: 183 EADRMLDMGFEPQIRRIVEQD---TMPPKGV------------------RHTMMFSATFP 221
Query: 947 PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVII 1005
++ LAR +L + +G VG +E I Q V + E DKR L+++LN G ++
Sbjct: 222 KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLV 281
Query: 1006 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065
FV KKGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+D
Sbjct: 282 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341
Query: 1066 IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
I +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 342 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 398
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-122
Identities = 128/377 (33%), Positives = 179/377 (47%), Gaps = 78/377 (20%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 30 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89
Query: 62 D---------QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 149
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 172
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E +
Sbjct: 150 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD---TMP 206
Query: 173 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLL 232
P R T+
Sbjct: 207 PKGV------------------RHTM---------------------------------- 214
Query: 233 ANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 292
MF+AT P ++ LAR +L + +G VG +E I Q V + E D
Sbjct: 215 -------------MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD 261
Query: 293 KRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 351
KR L+++LN G ++FV KKGAD L L GY ++HG + Q RE AL+
Sbjct: 262 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321
Query: 352 LKGGSKDILMAGDRRSR 368
+ G IL+A +R
Sbjct: 322 FRSGKSPILVATAVAAR 338
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 549 bits (1417), Expect = e-180
Identities = 161/439 (36%), Positives = 240/439 (54%), Gaps = 32/439 (7%)
Query: 1371 EKSLDEMTERDWRIFR--EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTP 1428
+ F + + + G VP P++++ A L I++ + K GY PTP
Sbjct: 22 AIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTP 81
Query: 1429 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488
IQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P + P +I++P
Sbjct: 82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL----GRPQVVIVSP 137
Query: 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
TRELA QI E KF ++ +V GG S Q + GC +VIATPGRL+D ++
Sbjct: 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197
Query: 1549 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------------------ 236
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
QT+MF+AT P ++R+A +L+ V IG VG ++Q +Y +++ KR KL+E
Sbjct: 237 --HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+L+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +
Sbjct: 295 ILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLF 1787
L+AT VA RG+DIK++ VINYDM I+DY HRIGRTGR G G A SF + D +
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413
Query: 1788 YDLKQMMISSPVSTCPPEL 1806
DL +++ S T P L
Sbjct: 414 ADLVKILEGSG-QTVPDFL 431
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 547 bits (1413), Expect = e-179
Identities = 157/427 (36%), Positives = 236/427 (55%), Gaps = 31/427 (7%)
Query: 696 EKSLDEMTERDWRIFR--EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTP 753
+ F + + + G VP P++++ A L I++ + K GY PTP
Sbjct: 22 AIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTP 81
Query: 754 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813
IQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P + P +I++P
Sbjct: 82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL----GRPQVVIVSP 137
Query: 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 873
TRELA QI E KF ++ +V GG S Q + GC +VIATPGRL+D ++
Sbjct: 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197
Query: 874 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------------------ 236
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
QT+MF+AT P ++R+A +L+ V IG VG ++Q +Y +++ KR KL+E
Sbjct: 237 --HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+L+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +
Sbjct: 295 ILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLF 1112
L+AT VA RG+DIK++ VINYDM I+DY HRIGRTGR G G A SF + D +
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413
Query: 1113 YDLKQMM 1119
DL +++
Sbjct: 414 ADLVKIL 420
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-119
Identities = 116/363 (31%), Positives = 176/363 (48%), Gaps = 75/363 (20%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ K GY PTPIQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P +
Sbjct: 71 VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL--- 127
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I++PTRELA QI E KF ++ +V GG S Q + GC +VIAT
Sbjct: 128 -GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D ++ ++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------- 236
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
QT+
Sbjct: 237 -------------HQTL------------------------------------------- 240
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
MF+AT P ++R+A +L+ V IG VG ++Q +Y +++ KR KL+E+L
Sbjct: 241 ----MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL 296
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +L+
Sbjct: 297 SEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355
Query: 362 AGD 364
A
Sbjct: 356 ATS 358
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-121
Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 50/377 (13%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
+ +I + I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------- 53
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R
Sbjct: 54 --------ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR- 104
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
+IV+ATPGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS------ 158
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974
+ T +F+AT+P + ++ + ++ +
Sbjct: 159 -------------------NRKITGLFSATIPEEIRKVVKDFITNYEEI---EACIGLAN 196
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+E + D + ++ L K VI+FV + L + NA L G
Sbjct: 197 VEHKFVHVK--DDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDL 250
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
Q R +++ + G D+L+ TDVA RG+DI V VIN+D + + Y HRIGRTGR
Sbjct: 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRM 310
Query: 1095 GKEGLAVSFCTKDDSHL 1111
G++G A++F +
Sbjct: 311 GRKGEAITFILNEYWLE 327
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-121
Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 50/377 (13%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
+ +I + I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------- 53
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R
Sbjct: 54 --------ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR- 104
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
+IV+ATPGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS------ 158
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649
+ T +F+AT+P + ++ + ++ +
Sbjct: 159 -------------------NRKITGLFSATIPEEIRKVVKDFITNYEEI---EACIGLAN 196
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+E + D + ++ L K VI+FV + L + NA L G
Sbjct: 197 VEHKFVHVK--DDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDL 250
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
Q R +++ + G D+L+ TDVA RG+DI V VIN+D + + Y HRIGRTGR
Sbjct: 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRM 310
Query: 1770 GKEGLAVSFCTKDDSHL 1786
G++G A++F +
Sbjct: 311 GRKGEAITFILNEYWLE 327
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 4e-78
Identities = 77/363 (21%), Positives = 140/363 (38%), Gaps = 97/363 (26%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 9 IREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL--------------- 53
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R +IV+AT
Sbjct: 54 ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVAT 112
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 113 PGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS-------------- 158
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
+ T +F
Sbjct: 159 -----------NRKITGLF----------------------------------------- 166
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+AT+P + ++ + ++ + +E + D + ++ L
Sbjct: 167 ------SATIPEEIRKVVKDFITNYEEI---EACIGLANVEHKFVHVK--DDWRSKVQAL 215
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
K VI+FV + L + NA L G Q R +++ + G D+L+
Sbjct: 216 RENKDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDLPQSVRNRNIDAFREGEYDMLI 271
Query: 362 AGD 364
D
Sbjct: 272 TTD 274
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-120
Identities = 116/384 (30%), Positives = 193/384 (50%), Gaps = 37/384 (9%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL------- 80
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+++ A+IM PTRELA Q + G GI ++ GG + + RL
Sbjct: 81 --EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------ 192
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-E 973
Q+++F+AT P V+ +L +P + + + T +
Sbjct: 193 -------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME--ELTLK 231
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR 291
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+GR
Sbjct: 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQ 1117
G GLA++ +D Y ++Q
Sbjct: 352 FGHLGLAINLINWNDRFNLYKIEQ 375
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-120
Identities = 116/384 (30%), Positives = 193/384 (50%), Gaps = 37/384 (9%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL------- 80
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+++ A+IM PTRELA Q + G GI ++ GG + + RL
Sbjct: 81 --EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------ 192
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-E 1648
Q+++F+AT P V+ +L +P + + + T +
Sbjct: 193 -------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME--ELTLK 231
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR 291
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+GR
Sbjct: 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQ 1792
G GLA++ +D Y ++Q
Sbjct: 352 FGHLGLAINLINWNDRFNLYKIEQ 375
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 3e-76
Identities = 85/364 (23%), Positives = 149/364 (40%), Gaps = 84/364 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L +++
Sbjct: 36 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL---------EKVKPK 86
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+IM PTRELA Q + G GI ++ GG + + RL I++ T
Sbjct: 87 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 146
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 147 PGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP-------------- 192
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q+++F
Sbjct: 193 -----------PTHQSLLF----------------------------------------- 200
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 300
+AT P V+ +L +P + + + T + I Q + E+ K L +
Sbjct: 201 ------SATFPLTVKEFMVKHLHKPYEINLME--ELTLKGITQYYAFVEERQKLHCLNTL 252
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
++ IIF N ++LAK + LGY+ H Q++R + + G L
Sbjct: 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312
Query: 361 MAGD 364
+ D
Sbjct: 313 VCSD 316
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-119
Identities = 127/389 (32%), Positives = 192/389 (49%), Gaps = 48/389 (12%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSL 793
L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV--- 69
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+ + G AII+ PTRELA Q+ +E ++ + GG + Q L+
Sbjct: 70 -------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 123 -NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN----- 176
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 973
K ++ ++F+ATMP + LA+ Y+ + + K
Sbjct: 177 --------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA----KINA 212
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTL 1030
IEQ ++E ++ E L R +K ++F K+ LA L +G+ A +
Sbjct: 213 NIEQSYVEVNENER----FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAI 268
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090
HG Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGR
Sbjct: 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328
Query: 1091 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
TGRAGK+G A+S + + +++ M
Sbjct: 329 TGRAGKKGKAISIINRREYKKLRYIERAM 357
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-119
Identities = 127/389 (32%), Positives = 192/389 (49%), Gaps = 48/389 (12%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSL 1468
L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV--- 69
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+ + G AII+ PTRELA Q+ +E ++ + GG + Q L+
Sbjct: 70 -------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 123 -NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN----- 176
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 1648
K ++ ++F+ATMP + LA+ Y+ + + K
Sbjct: 177 --------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA----KINA 212
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTL 1705
IEQ ++E ++ E L R +K ++F K+ LA L +G+ A +
Sbjct: 213 NIEQSYVEVNENER----FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAI 268
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1765
HG Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGR
Sbjct: 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328
Query: 1766 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
TGRAGK+G A+S + + +++ M
Sbjct: 329 TGRAGKKGKAISIINRREYKKLRYIERAM 357
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 6e-77
Identities = 96/367 (26%), Positives = 148/367 (40%), Gaps = 95/367 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ + +
Sbjct: 21 IRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV----------N 70
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ G AII+ PTRELA Q+ +E ++ + GG + Q L+ IV+
Sbjct: 71 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVG 129
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 130 TPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------- 176
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
K ++ ++F
Sbjct: 177 ------------KDKRILLF---------------------------------------- 184
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
+ATMP + LA+ Y+ + + K IEQ ++E ++ E
Sbjct: 185 -------SATMPREILNLAKKYMGDYSFIKA----KINANIEQSYVEVNENER----FEA 229
Query: 301 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L R +K ++F K+ LA L +G+ A +HG Q QRE + K
Sbjct: 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289
Query: 358 DILMAGD 364
IL+A D
Sbjct: 290 RILIATD 296
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-119
Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 29/267 (10%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q P+
Sbjct: 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV 62
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ+
Sbjct: 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQV 118
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
++ ++ +++ + GG + Q L G EI IATPGRLID LE L + T
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178
Query: 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941
Y+VLDEADRM+DMGFEP ++KI++ + PD RQT+M+
Sbjct: 179 YLVLDEADRMLDMGFEPQIRKIVDQIR-----PD--------------------RQTLMW 213
Query: 942 TATMPPAVERLARSYLRRPATVYIGSV 968
+AT P V +LA +L+ + IG++
Sbjct: 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-119
Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 29/267 (10%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q P+
Sbjct: 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV 62
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ+
Sbjct: 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQV 118
Query: 1497 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 1556
++ ++ +++ + GG + Q L G EI IATPGRLID LE L + T
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178
Query: 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616
Y+VLDEADRM+DMGFEP ++KI++ + PD RQT+M+
Sbjct: 179 YLVLDEADRMLDMGFEPQIRKIVDQIR-----PD--------------------RQTLMW 213
Query: 1617 TATMPPAVERLARSYLRRPATVYIGSV 1643
+AT P V +LA +L+ + IG++
Sbjct: 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = 3e-94
Identities = 90/274 (32%), Positives = 132/274 (48%), Gaps = 76/274 (27%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 43 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 101
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 102 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + PD
Sbjct: 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PD------ 207
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
RQT+
Sbjct: 208 --------------RQTL------------------------------------------ 211
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 274
M++AT P V +LA +L+ + IG++
Sbjct: 212 -----MWSATWPKEVRQLAEDFLKDYIHINIGAL 240
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 378 bits (974), Expect = e-118
Identities = 109/398 (27%), Positives = 197/398 (49%), Gaps = 41/398 (10%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F
Sbjct: 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
+ +L ++ + A+I+APTRELA QI++ G + ++ +GG
Sbjct: 93 ISVL---------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 143
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+ E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 144 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
Y+P Q V+ +AT+P + + ++ P +
Sbjct: 204 YRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDPIRI 238
Query: 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1019
+ E I+Q ++ E+++ K + L +IF N K+ D L +
Sbjct: 239 LVKRDELTLEGIKQF-FVAVEREEWK--FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 295
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
+ + + ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+
Sbjct: 296 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 355
Query: 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
+ E Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 378 bits (974), Expect = e-118
Identities = 109/398 (27%), Positives = 197/398 (49%), Gaps = 41/398 (10%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F
Sbjct: 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
+ +L ++ + A+I+APTRELA QI++ G + ++ +GG
Sbjct: 93 ISVL---------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 143
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+ E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 144 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
Y+P Q V+ +AT+P + + ++ P +
Sbjct: 204 YRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDPIRI 238
Query: 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1694
+ E I+Q ++ E+++ K + L +IF N K+ D L +
Sbjct: 239 LVKRDELTLEGIKQF-FVAVEREEWK--FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 295
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
+ + + ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+
Sbjct: 296 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 355
Query: 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
+ E Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 1e-73
Identities = 78/367 (21%), Positives = 148/367 (40%), Gaps = 88/367 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L ++
Sbjct: 52 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL---------QCLDIQ 102
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+I+APTRELA QI++ G + ++ +GG + E +L G +V T
Sbjct: 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 162
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D++ R L +VLDEAD M++ GF+ + + Y+P
Sbjct: 163 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-------------- 208
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+
Sbjct: 209 -----------PATQVVLI----------------------------------------- 216
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+AT+P + + ++ P + + E I+Q ++ E+++ K + L
Sbjct: 217 ------SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF-FVAVEREEWK--FDTL 267
Query: 302 NR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+IF N K+ D L + + + + ++HG Q++RE + + G+
Sbjct: 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGAS 327
Query: 358 DILMAGD 364
+L++ D
Sbjct: 328 RVLISTD 334
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-117
Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 42/397 (10%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 78 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 128
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 129 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
+P Q V+ +ATMP V + ++R P +
Sbjct: 188 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 222
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGL 1020
+ E I+Q Y+ E+++ K E L +IF N ++ + L L
Sbjct: 223 VKKDELTLEGIKQF-YVNVEEEEYK--YECLTDLYDSISVTQAVIFCNTRRKVEELTTKL 279
Query: 1021 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ ++ Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ +
Sbjct: 280 RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 339
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
E+Y HRIGR GR G++G+A++F T +D +L++
Sbjct: 340 KENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-117
Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 42/397 (10%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 78 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 128
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 129 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
+P Q V+ +ATMP V + ++R P +
Sbjct: 188 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 222
Query: 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGL 1695
+ E I+Q Y+ E+++ K E L +IF N ++ + L L
Sbjct: 223 VKKDELTLEGIKQF-YVNVEEEEYK--YECLTDLYDSISVTQAVIFCNTRRKVEELTTKL 279
Query: 1696 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1755
+ ++ Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ +
Sbjct: 280 RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 339
Query: 1756 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
E+Y HRIGR GR G++G+A++F T +D +L++
Sbjct: 340 KENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 1e-72
Identities = 81/367 (22%), Positives = 145/367 (39%), Gaps = 89/367 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ EP+ IQ++AI ++ D++ A++G+GKT F + L R++ +
Sbjct: 36 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL---------QRIDTS 86
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++APTRELA QI++ + I+ +GG S E LR +IV+ T
Sbjct: 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGT 145
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D ++ R ++ +LDEAD M+ GF+ + +I +P
Sbjct: 146 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------- 191
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+ +A
Sbjct: 192 -----------PTTQVVLLSA--------------------------------------- 201
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
TMP V + ++R P + + E I+Q Y+ E+++ K E L
Sbjct: 202 --------TMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQF-YVNVEEEEYK--YECL 250
Query: 302 NR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+IF N ++ + L L + ++ Q++R+ + + GS
Sbjct: 251 TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 310
Query: 358 DILMAGD 364
IL++ D
Sbjct: 311 RILISTD 317
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-117
Identities = 131/497 (26%), Positives = 208/497 (41%), Gaps = 54/497 (10%)
Query: 1338 KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGK 1397
+R R + ++ D+ H+ + + ++ ++ ++
Sbjct: 17 NQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSL--- 73
Query: 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTL 1455
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT
Sbjct: 74 -------LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTF 126
Query: 1456 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRT 1511
AFL+P+ Q L A+I+APTR+LA QIE E K
Sbjct: 127 AFLIPI---FQHLINTKFDSQ--YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 181
Query: 1512 VLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDM 1569
V +VGG ++ +L IVIATPGRLIDVLE Y VLDEADR++++
Sbjct: 182 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 241
Query: 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
GF D++ I + N K +T++F+AT+ V++LA
Sbjct: 242 GFRDDLETISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLAN 283
Query: 1630 SYLRRPATVYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVI 1679
+ + + +++ +V K ERI+Q V I + ++ R I
Sbjct: 284 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343
Query: 1680 IFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736
IF K L L+ K HG Q +R + K ILV TDV
Sbjct: 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403
Query: 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796
RG+D +V V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+
Sbjct: 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463
Query: 1797 SPVSTCPPELLNHPDAQ 1813
E ++
Sbjct: 464 VIAKQEKYEPSEEIKSE 480
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 381 bits (979), Expect = e-117
Identities = 130/476 (27%), Positives = 205/476 (43%), Gaps = 54/476 (11%)
Query: 663 KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGK 722
+R R + ++ D+ H+ + + ++ ++ ++
Sbjct: 17 NQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSL--- 73
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTL 780
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT
Sbjct: 74 -------LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTF 126
Query: 781 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRT 836
AFL+P+ Q L A+I+APTR+LA QIE E K
Sbjct: 127 AFLIPI---FQHLINTKFDSQ--YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 181
Query: 837 VLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDM 894
V +VGG ++ +L IVIATPGRLIDVLE Y VLDEADR++++
Sbjct: 182 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 241
Query: 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
GF D++ I + N K +T++F+AT+ V++LA
Sbjct: 242 GFRDDLETISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLAN 283
Query: 955 SYLRRPATVYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVI 1004
+ + + +++ +V K ERI+Q V I + ++ R I
Sbjct: 284 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343
Query: 1005 IFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061
IF K L L+ K HG Q +R + K ILV TDV
Sbjct: 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403
Query: 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
RG+D +V V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+
Sbjct: 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 459
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 4e-75
Identities = 97/384 (25%), Positives = 146/384 (38%), Gaps = 91/384 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+ Q L
Sbjct: 87 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPI---FQHLINTKFDS 143
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLG 114
A+I+APTR+LA QIE E K V +VGG ++ +L
Sbjct: 144 Q--YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201
Query: 115 CEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 173
IVIATPGRLIDVLE Y VLDEADR++++GF D++ I + N K
Sbjct: 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 261
Query: 174 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLA 233
+T++F
Sbjct: 262 ADN------------------IKTLLF--------------------------------- 270
Query: 234 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT----ERIEQIVYILS 289
+AT+ V++LA + + + +++ +V K ERI+Q V I
Sbjct: 271 --------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316
Query: 290 EQDKRKKLM------EVLNRGVKKPVIIFVNQKKGADVLAKGLE---KLGYNACTLHGGK 340
+ ++ R IIF K L L+ K HG
Sbjct: 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 376
Query: 341 GQEQRELALNSLKGGSKDILMAGD 364
Q +R + K IL+ D
Sbjct: 377 TQNKRTSLVKRFKKDESGILVCTD 400
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 374 bits (963), Expect = e-116
Identities = 113/398 (28%), Positives = 201/398 (50%), Gaps = 42/398 (10%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 97 SIL---------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 147
Query: 845 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+ +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ + I
Sbjct: 148 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 208 FQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPIRI 242
Query: 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1019
+ E I Q YI E+++ K ++ L +IF+N ++ D L +
Sbjct: 243 LVKKEELTLEGIRQF-YINVEREEWK--LDTLCDLYETLTITQAVIFINTRRKVDWLTEK 299
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
+ + +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+
Sbjct: 300 MHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359
Query: 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
+ E+Y HRIGR GR G++G+A++ T++D D++
Sbjct: 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 374 bits (963), Expect = e-116
Identities = 113/398 (28%), Positives = 201/398 (50%), Gaps = 42/398 (10%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 97 SIL---------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 147
Query: 1520 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+ +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ + I
Sbjct: 148 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 208 FQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPIRI 242
Query: 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1694
+ E I Q YI E+++ K ++ L +IF+N ++ D L +
Sbjct: 243 LVKKEELTLEGIRQF-YINVEREEWK--LDTLCDLYETLTITQAVIFINTRRKVDWLTEK 299
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
+ + +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+
Sbjct: 300 MHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359
Query: 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
+ E+Y HRIGR GR G++G+A++ T++D D++
Sbjct: 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 7e-72
Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 89/368 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L ++E
Sbjct: 55 IYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL---------QQIELD 105
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL-GCEIVIA 120
+ A+++APTRELAQQI++ G +G +GG + + +L++ I++
Sbjct: 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 165
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR+ D+L RYL VLDEAD M+ GF+ + I + +
Sbjct: 166 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------- 212
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
Q V+ +A
Sbjct: 213 ------------SNTQVVLLSA-------------------------------------- 222
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
TMP V + + ++R P + + E I Q YI E+++ K ++
Sbjct: 223 ---------TMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF-YINVEREEWK--LDT 270
Query: 301 LNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L +IF+N ++ D L + + + +HG Q++R++ + + GS
Sbjct: 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 330
Query: 357 KDILMAGD 364
+L+ D
Sbjct: 331 SRVLITTD 338
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 373 bits (959), Expect = e-114
Identities = 144/581 (24%), Positives = 230/581 (39%), Gaps = 70/581 (12%)
Query: 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLV 788
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+
Sbjct: 24 EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 83
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLS 844
+ + ++ A+I+APTR+LA QIE E K V +VGG
Sbjct: 84 HLINTKFDSQ-----YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 138
Query: 845 REEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQK 902
++ +L IVIATPGRLIDVLE Y VLDEADR++++GF D++
Sbjct: 139 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
I + N K +T++F+AT+ V++LA + + +
Sbjct: 199 ISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLANNIMNKKEC 240
Query: 963 VYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVIIFVNQKKG 1012
+++ +V K ERI+Q V I + ++ R IIF K
Sbjct: 241 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Query: 1013 ADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
L L+ K HG Q +R + K ILV TDV RG+D +V
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ-----MMISSPV 1124
V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+ +
Sbjct: 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420
Query: 1125 TGRAGKEGLAVSFCTKDD----------------SHLFYDLKQMMISSPVSTCPPELLNH 1168
+ + T++ Y + I +++ LLN
Sbjct: 421 EPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLND 480
Query: 1169 PDAQ---HKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSA 1225
P + + + R ++ R SRD + S + ++
Sbjct: 481 PQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEISFRGNKNYNN 540
Query: 1226 CSLPRSHKSSSLLSRYSEQDPEEKELNKDKEREGEAIKERY 1266
S R + R S + + DK Y
Sbjct: 541 RSQNRDYDDEP--FRRSNNNRRSFSRSNDKNNYSSRNSNIY 579
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 371 bits (954), Expect = e-113
Identities = 126/443 (28%), Positives = 195/443 (44%), Gaps = 44/443 (9%)
Query: 1406 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLV 1463
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+
Sbjct: 24 EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 83
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLS 1519
+ + ++ A+I+APTR+LA QIE E K V +VGG
Sbjct: 84 HLINTKFDSQ-----YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 138
Query: 1520 REEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQK 1577
++ +L IVIATPGRLIDVLE Y VLDEADR++++GF D++
Sbjct: 139 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
I + N K +T++F+AT+ V++LA + + +
Sbjct: 199 ISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLANNIMNKKEC 240
Query: 1638 VYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVIIFVNQKKG 1687
+++ +V K ERI+Q V I + ++ R IIF K
Sbjct: 241 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Query: 1688 ADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
L L+ K HG Q +R + K ILV TDV RG+D +V
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360
Query: 1745 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPP 1804
V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+
Sbjct: 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420
Query: 1805 ELLNHPDAQHKPGTVMVPKKRRE 1827
E ++ P+ +
Sbjct: 421 EPSEEIKSEVLEAVTEEPEDISD 443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 1e-73
Identities = 95/384 (24%), Positives = 148/384 (38%), Gaps = 91/384 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+ + + ++
Sbjct: 36 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-- 93
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLG 114
A+I+APTR+LA QIE E K V +VGG ++ +L
Sbjct: 94 ---YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 115 CEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 173
IVIATPGRLIDVLE Y VLDEADR++++GF D++ I + N K
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 210
Query: 174 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLA 233
+T++F
Sbjct: 211 ADN------------------IKTLLF--------------------------------- 219
Query: 234 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT----ERIEQIVYILS 289
+AT+ V++LA + + + +++ +V K ERI+Q V I
Sbjct: 220 --------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265
Query: 290 EQDKRKKLM------EVLNRGVKKPVIIFVNQKKGADVLAKGLE---KLGYNACTLHGGK 340
+ ++ R IIF K L L+ K HG
Sbjct: 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 325
Query: 341 GQEQRELALNSLKGGSKDILMAGD 364
Q +R + K IL+ D
Sbjct: 326 TQNKRTSLVKRFKKDESGILVCTD 349
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-112
Identities = 111/394 (28%), Positives = 197/394 (50%), Gaps = 39/394 (9%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL- 67
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 847
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 --------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 848 QGFRLRLGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILE 905
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179
Query: 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 180 MTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 966 GSVGKPT-ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
K T ++Q L + +K +KL ++L+ V+IFV + LA+ L +
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
+ A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 1085 THRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1117
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-112
Identities = 111/394 (28%), Positives = 197/394 (50%), Gaps = 39/394 (9%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL- 67
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 1522
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 --------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 1523 QGFRLRLGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILE 1580
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179
Query: 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 180 MTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 1641 GSVGKPT-ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1699
K T ++Q L + +K +KL ++L+ V+IFV + LA+ L +
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
+ A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 1760 THRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1792
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 1e-70
Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 85/367 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 23 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCE-IVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 133
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 134 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 182
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
+Q +MF
Sbjct: 183 --------------HEKQVMMF-------------------------------------- 190
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
+AT+ + + R +++ P +++ K T ++Q L + +K +KL
Sbjct: 191 ---------SATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL 241
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L+ V+IFV + LA+ L + + A +H G QE+R K +
Sbjct: 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 301
Query: 358 DILMAGD 364
IL+A +
Sbjct: 302 RILVATN 308
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 337 bits (868), Expect = e-106
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 30/254 (11%)
Query: 713 DYSITIKGGKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
D + + +P P +K+A ++L+ I ++G +PTPIQ QA PI LQ D+I V
Sbjct: 4 DDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVV 63
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TG+GKTL++L+P + + S P + GP +++ PTRELA +E E +K+
Sbjct: 64 AQTGTGKTLSYLMPGFIHLDSQPISREQRN---GPGMLVLTPTRELALHVEAECSKYSY- 119
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
G++++ + GG +R Q + G +I+IATPGRL D+ N + L TY+V+DEAD+M
Sbjct: 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM 179
Query: 892 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951
+DM FEP ++KIL + PD RQTVM +AT P V +
Sbjct: 180 LDMEFEPQIRKILLDVR-----PD--------------------RQTVMTSATWPDTVRQ 214
Query: 952 LARSYLRRPATVYI 965
LA SYL+ P VY+
Sbjct: 215 LALSYLKDPMIVYV 228
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 337 bits (868), Expect = e-106
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 30/254 (11%)
Query: 1388 DYSITIKGGKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
D + + +P P +K+A ++L+ I ++G +PTPIQ QA PI LQ D+I V
Sbjct: 4 DDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVV 63
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TG+GKTL++L+P + + S P + GP +++ PTRELA +E E +K+
Sbjct: 64 AQTGTGKTLSYLMPGFIHLDSQPISREQRN---GPGMLVLTPTRELALHVEAECSKYSY- 119
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
G++++ + GG +R Q + G +I+IATPGRL D+ N + L TY+V+DEAD+M
Sbjct: 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM 179
Query: 1567 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 1626
+DM FEP ++KIL + PD RQTVM +AT P V +
Sbjct: 180 LDMEFEPQIRKILLDVR-----PD--------------------RQTVMTSATWPDTVRQ 214
Query: 1627 LARSYLRRPATVYI 1640
LA SYL+ P VY+
Sbjct: 215 LALSYLKDPMIVYV 228
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 2e-90
Identities = 90/270 (33%), Positives = 130/270 (48%), Gaps = 76/270 (28%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G +PTPIQ QA PI LQ D+I VA+TG+GKTL++L+P + + S P +
Sbjct: 35 IIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN- 93
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA +E E +K+ G++++ + GG +R Q + G +I+IAT
Sbjct: 94 --GPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIAT 150
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL D+ N + L TY+V+DEAD+M+DM FEP ++KIL + PD
Sbjct: 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR-----PD------- 198
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQTV
Sbjct: 199 -------------RQTV------------------------------------------- 202
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
M +AT P V +LA SYL+ P VY+
Sbjct: 203 ----MTSATWPDTVRQLALSYLKDPMIVYV 228
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-106
Identities = 118/415 (28%), Positives = 203/415 (48%), Gaps = 49/415 (11%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF L
Sbjct: 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 64 TML---------TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-- 112
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 1578
++ ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 113 --SFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 1639 YIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1697
+ + + I+Q+ + +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1698 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM----- 1752
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD+
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1753 -AKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQMMISSPVSTCPPE 1805
Y HRIGRTGR G++G+A+SF K+ ++ +++ ++ P +
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTD 380
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-106
Identities = 117/393 (29%), Positives = 194/393 (49%), Gaps = 48/393 (12%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF L
Sbjct: 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 64 TML---------TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-- 112
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 903
++ ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 113 --SFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 964 YIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
+ + + I+Q+ + +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM----- 1077
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD+
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1078 -AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
Y HRIGRTGR G++G+A+SF +S
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 2e-65
Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 89/367 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF L +L R+
Sbjct: 20 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------TRVN 70
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
D P AI +AP+RELA+Q E + G I + L+V ++ ++++
Sbjct: 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD----SFEKNKQINAQVIV 126
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDA 178
TPG ++D++ + + L + VLDEAD M+D G ++ ++P
Sbjct: 127 GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP----------- 175
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
K Q V+F+A
Sbjct: 176 --------------KDTQLVLFSA------------------------------------ 185
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKL 297
T AV + A+ + T+ + + + I+Q+ + +E DK L
Sbjct: 186 -----------TFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVL 234
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
E+ IIFV KK A+VL L+ G+ LHG ++R+ ++ + G
Sbjct: 235 TELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRS 294
Query: 358 DILMAGD 364
+L+ +
Sbjct: 295 KVLITTN 301
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 338 bits (869), Expect = e-104
Identities = 111/407 (27%), Positives = 192/407 (47%), Gaps = 56/407 (13%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGL 843
+L +++E A++ P + ++PT ELA Q + + G ++ V G
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQ 901
E ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 135 KLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961
+I +P + Q ++F+AT +V + A+ + P
Sbjct: 192 RIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPDPN 226
Query: 962 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLA 1017
+ + + + I+Q Y+L K + L G +IF + +K A LA
Sbjct: 227 VIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCNLYGAITIAQAMIFCHTRKTASWLA 283
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343
Query: 1078 ------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1117
E Y HRIGRTGR GK GLAV+ K ++ +++
Sbjct: 344 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 390
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 338 bits (869), Expect = e-104
Identities = 111/407 (27%), Positives = 192/407 (47%), Gaps = 56/407 (13%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGL 1518
+L +++E A++ P + ++PT ELA Q + + G ++ V G
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQ 1576
E ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 135 KLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 1636
+I +P + Q ++F+AT +V + A+ + P
Sbjct: 192 RIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPDPN 226
Query: 1637 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLA 1692
+ + + + I+Q Y+L K + L G +IF + +K A LA
Sbjct: 227 VIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCNLYGAITIAQAMIFCHTRKTASWLA 283
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343
Query: 1753 ------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1792
E Y HRIGRTGR GK GLAV+ K ++ +++
Sbjct: 344 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 390
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 218 bits (559), Expect = 2e-62
Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 96/372 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+ +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E
Sbjct: 40 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVE 90
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIV 118
A++ P + ++PT ELA Q + + G ++ V G E ++ +IV
Sbjct: 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIV 147
Query: 119 IATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTE 176
I TPG ++D +++ + VLDEAD MI G + +I +P
Sbjct: 148 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------- 198
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
+ Q ++F+A
Sbjct: 199 ----------------RNCQMLLFSA---------------------------------- 208
Query: 237 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
T +V + A+ + P + + + + I+Q Y+L K
Sbjct: 209 -------------TFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK- 253
Query: 297 LMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 352
+ L G +IF + +K A LA L K G+ L G EQR +
Sbjct: 254 -FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312
Query: 353 KGGSKDILMAGD 364
+ G + +L+ +
Sbjct: 313 REGKEKVLVTTN 324
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 335 bits (861), Expect = e-103
Identities = 67/451 (14%), Positives = 137/451 (30%), Gaps = 83/451 (18%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 1472
+ +K + T QR +Q + VA TG GKT ++ L
Sbjct: 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL---------- 58
Query: 1473 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL--- 1529
A +G + ++ PT L +Q E K ++ + +EE+ +
Sbjct: 59 --WLARKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEE 115
Query: 1530 -GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
I++ + + E L + ++ +D+ D ++ D ++ +P
Sbjct: 116 DDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP----- 168
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS------------------ 1630
+ F+ + ++
Sbjct: 169 --------------------EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGI 208
Query: 1631 ---YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG 1687
R +G + I + ++K +L+E+ G ++IF ++
Sbjct: 209 RPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDG----ILIFAQTEEE 264
Query: 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV----AGRGIDIKD 1743
L + L++ +N + E K G +IL+ RG+D+ +
Sbjct: 265 GKELYEYLKRFKFNVGETWS-----EFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPE 319
Query: 1744 -VSMVINYDM--AKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDDSHLFYDLKQMMISSP 1798
+ VI + + Y GR+ R L VS ++D +F LK ++
Sbjct: 320 RIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIA 379
Query: 1799 VSTCPPELLNHPDAQHKPGTVMVPKKRREEK 1829
E + + RE
Sbjct: 380 EEEIIEEAEANWKELVHEVEESRRRSERELT 410
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-102
Identities = 64/416 (15%), Positives = 131/416 (31%), Gaps = 83/416 (19%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797
+ +K + T QR +Q + VA TG GKT ++ L
Sbjct: 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL---------- 58
Query: 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL--- 854
A +G + ++ PT L +Q E K ++ + +EE+ +
Sbjct: 59 --WLARKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEE 115
Query: 855 -GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
I++ + + E L + ++ +D+ D ++ D ++ +P
Sbjct: 116 DDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP----- 168
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS------------------ 955
+ F+ + ++
Sbjct: 169 --------------------EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGI 208
Query: 956 ---YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG 1012
R +G + I + ++K +L+E+ G ++IF ++
Sbjct: 209 RPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDG----ILIFAQTEEE 264
Query: 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV----AGRGIDIKD 1068
L + L++ +N + E K G +IL+ RG+D+ +
Sbjct: 265 GKELYEYLKRFKFNVGETWS-----EFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPE 319
Query: 1069 -VSMVINYDM--AKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDDSHLFYDLKQMM 1119
+ VI + + Y GR+ R L VS ++D +F LK +
Sbjct: 320 RIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRL 375
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 271 bits (696), Expect = 1e-80
Identities = 61/474 (12%), Positives = 127/474 (26%), Gaps = 103/474 (21%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+K + T QR +Q + VA TG GKT ++ L A
Sbjct: 14 FKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL------------WLA 61
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL----GCEI 117
+G + ++ PT L +Q E K ++ + +EE+ + I
Sbjct: 62 RKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 177
++ + + E L + ++ +D+ D ++ D ++ +P
Sbjct: 121 LVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP---------- 168
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237
+ F+ KI E
Sbjct: 169 ---------------EEIIRKAFSTIKQG-KIYE-------------------------R 187
Query: 238 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K + ++ ++ + R +G + I + ++K +L
Sbjct: 188 PKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVEL 247
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+ G ++IF ++ L + L++ +N + E K G
Sbjct: 248 LEIFRDG----ILIFAQTEEEGKELYEYLKRFKFNVGETWS-----EFEKNFEDFKVGKI 298
Query: 358 DILMAGD-------R-----------------RSRSRSPPRKRRSRSRERDYDRVRERDT 393
+IL+ R + RS + + +
Sbjct: 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVS 358
Query: 394 DRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERRE 447
+D + E E+ + RR R
Sbjct: 359 VIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSERELTDT 412
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-101
Identities = 97/270 (35%), Positives = 147/270 (54%), Gaps = 23/270 (8%)
Query: 712 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 65 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949
RM+DMGFEP ++KI+E + P + RQT+MF+AT P +
Sbjct: 185 RMLDMGFEPQIRKIIEESNM----PSGIN-----------------RQTLMFSATFPKEI 223
Query: 950 ERLARSYLRRPATVYIGSVGKPTERIEQIV 979
++LA +L + +G VG ++ I+Q +
Sbjct: 224 QKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-101
Identities = 97/270 (35%), Positives = 147/270 (54%), Gaps = 23/270 (8%)
Query: 1387 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 65 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624
RM+DMGFEP ++KI+E + P + RQT+MF+AT P +
Sbjct: 185 RMLDMGFEPQIRKIIEESNM----PSGIN-----------------RQTLMFSATFPKEI 223
Query: 1625 ERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
++LA +L + +G VG ++ I+Q +
Sbjct: 224 QKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 280 bits (720), Expect = 4e-86
Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 68/284 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I Y PTPIQ+ AIP L++RDI+ A+TGSGKT AFL+P++ + +
Sbjct: 38 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I+APTRELA QI E+ KF +R+ +V GG Q +++GC +++AT
Sbjct: 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVAT 157
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D +E + L C YIVLDEADRM+DMGFEP ++KI+E + P +
Sbjct: 158 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM----PSGIN---- 209
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQT+M
Sbjct: 210 -------------RQTLM------------------------------------------ 214
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
F+AT P +++LA +L + +G VG ++ I+Q +
Sbjct: 215 -----FSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 330 bits (847), Expect = e-100
Identities = 116/491 (23%), Positives = 216/491 (43%), Gaps = 56/491 (11%)
Query: 643 GIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEM 702
+ + Q+ L++ + + + V+ ++ ++++ +DR +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLI 66
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
+ + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 67 RSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM 126
Query: 763 LQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA Q
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELALQ 177
Query: 821 IEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLN 878
+ + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 234
Query: 879 QCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ 937
+ VLDEAD MI G + +I +P + Q
Sbjct: 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQ 269
Query: 938 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR 997
++F+AT +V + A+ + P + + + + I+Q Y+L K + L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCN 326
Query: 998 --GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
G +IF + +K A LA L K G+ L G EQR + + G + +
Sbjct: 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386
Query: 1054 LVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-K 1106
LV T+V RGID++ VS+VIN+D+ E Y HRIGRTGR GK GLAV+ K
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 1107 DDSHLFYDLKQ 1117
++ +++
Sbjct: 447 HSMNILNRIQE 457
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 330 bits (847), Expect = e-100
Identities = 116/491 (23%), Positives = 216/491 (43%), Gaps = 56/491 (11%)
Query: 1318 GIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEM 1377
+ + Q+ L++ + + + V+ ++ ++++ +DR +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLI 66
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
+ + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 67 RSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM 126
Query: 1438 LQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA Q
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELALQ 177
Query: 1496 IEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLN 1553
+ + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 234
Query: 1554 QCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ 1612
+ VLDEAD MI G + +I +P + Q
Sbjct: 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQ 269
Query: 1613 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR 1672
++F+AT +V + A+ + P + + + + I+Q Y+L K + L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCN 326
Query: 1673 --GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
G +IF + +K A LA L K G+ L G EQR + + G + +
Sbjct: 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386
Query: 1729 LVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-K 1781
LV T+V RGID++ VS+VIN+D+ E Y HRIGRTGR GK GLAV+ K
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 1782 DDSHLFYDLKQ 1792
++ +++
Sbjct: 447 HSMNILNRIQE 457
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 2e-59
Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 96/372 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+ +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVE 157
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIV 118
A++ P + ++PT ELA Q + + G ++ V G E ++ +IV
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIV 214
Query: 119 IATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTE 176
I TPG ++D +++ + VLDEAD MI G + +I +P
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------- 265
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
+ Q ++F+A
Sbjct: 266 ----------------RNCQMLLFSA---------------------------------- 275
Query: 237 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
T +V + A+ + P + + + + I+Q Y+L K
Sbjct: 276 -------------TFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK- 320
Query: 297 LMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 352
+ L G +IF + +K A LA L K G+ L G EQR +
Sbjct: 321 -FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379
Query: 353 KGGSKDILMAGD 364
+ G + +L+ +
Sbjct: 380 REGKEKVLVTTN 391
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 9e-90
Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 42/268 (15%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEAS----LPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 765
R + I ++G +PDP+ +++ + + +L+ I G+ PTPIQ QAIP+ L
Sbjct: 7 LRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825
R+++ A TGSGKTLAF +P+L+ ++ +G A+I++PTRELA QI E
Sbjct: 67 RELLASAPTGSGKTLAFSIPILMQLKQPAN--------KGFRALIISPTRELASQIHREL 118
Query: 826 NKFGTPLGIRTVLVVGGLSREEQ-GFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTY 882
K G R ++ ++ G + +I++ TP RLI +L+ ++ +
Sbjct: 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178
Query: 883 IVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 939
+V+DE+D++ + GF + I +
Sbjct: 179 LVVDESDKLFEDGKTGFRDQLASI-----FLACTSHK-------------------VRRA 214
Query: 940 MFTATMPPAVERLARSYLRRPATVYIGS 967
MF+AT VE+ + L +V IG+
Sbjct: 215 MFSATFAYDVEQWCKLNLDNVISVSIGA 242
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 9e-90
Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 42/268 (15%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEAS----LPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
R + I ++G +PDP+ +++ + + +L+ I G+ PTPIQ QAIP+ L
Sbjct: 7 LRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500
R+++ A TGSGKTLAF +P+L+ ++ +G A+I++PTRELA QI E
Sbjct: 67 RELLASAPTGSGKTLAFSIPILMQLKQPAN--------KGFRALIISPTRELASQIHREL 118
Query: 1501 NKFGTPLGIRTVLVVGGLSREEQ-GFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTY 1557
K G R ++ ++ G + +I++ TP RLI +L+ ++ +
Sbjct: 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178
Query: 1558 IVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 1614
+V+DE+D++ + GF + I +
Sbjct: 179 LVVDESDKLFEDGKTGFRDQLASI-----FLACTSHK-------------------VRRA 214
Query: 1615 MFTATMPPAVERLARSYLRRPATVYIGS 1642
MF+AT VE+ + L +V IG+
Sbjct: 215 MFSATFAYDVEQWCKLNLDNVISVSIGA 242
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 1e-72
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ PTPIQ QAIP+ L R+++ A TGSGKTLAF +P+L+ ++
Sbjct: 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPAN------- 96
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ-GFRLRLGCEIVIA 120
+G A+I++PTRELA QI E K G R ++ ++ G + +I++
Sbjct: 97 -KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155
Query: 121 TPGRLIDVLENRYLVLN--QCTYIVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDT 175
TP RLI +L+ ++ ++V+DE+D++ + GF + I
Sbjct: 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI-----FLACTSHK 210
Query: 176 EDAEDENKLLANYNSKKKYRQTVMFTATMPP 206
+ MF+AT
Sbjct: 211 -------------------VRRAMFSATFAY 222
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273
+ MF+AT VE+ + L +V IG+
Sbjct: 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 3e-79
Identities = 89/245 (36%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
+ + +K+ + + E +++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
LP+L + + Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+
Sbjct: 99 LPIL---------NALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGI 149
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
Q L I+IATPGRLID LEN + L Y+V+DEADR+++M FE +V K
Sbjct: 150 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
IL+ +P + R+T +F+ATM V++L R+ L+ P
Sbjct: 210 ILKVIP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVK 244
Query: 963 VYIGS 967
+ S
Sbjct: 245 CAVSS 249
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 3e-79
Identities = 89/245 (36%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
+ + +K+ + + E +++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
LP+L + + Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+
Sbjct: 99 LPIL---------NALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGI 149
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
Q L I+IATPGRLID LEN + L Y+V+DEADR+++M FE +V K
Sbjct: 150 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
IL+ +P + R+T +F+ATM V++L R+ L+ P
Sbjct: 210 ILKVIP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVK 244
Query: 1638 VYIGS 1642
+ S
Sbjct: 245 CAVSS 249
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 2e-70
Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 35/206 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF LP+L + +
Sbjct: 58 CDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL---------NALLET 108
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+ Q L I+IAT
Sbjct: 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIAT 168
Query: 122 PGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRLID LEN + L Y+V+DEADR+++M FE +V KIL+ +P
Sbjct: 169 PGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------- 215
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
+ R+T +F+ATM
Sbjct: 216 ------------RDRKTFLFSATMTK 229
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273
+ R+T +F+ATM V++L R+ L+ P + S
Sbjct: 216 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 6e-74
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 1631 YLRRPATVYIGS-------VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVN 1683
+ + V +G+ +G + + Q V + E+ K L+E L + PV+IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62
Query: 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1743
+K D + + L G A +HGGK QE+R A+ + + G KD+LVATDVA +G+D
Sbjct: 63 KKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPA 122
Query: 1744 VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTC 1802
+ VINYDM + IE+Y HRIGRTG +G G+A +F K D + DLK +++ +
Sbjct: 123 IQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAK-QKV 181
Query: 1803 PPELLN 1808
PP L
Sbjct: 182 PPVLQV 187
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 5e-72
Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Query: 956 YLRRPATVYIGS-------VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVN 1008
+ + V +G+ +G + + Q V + E+ K L+E L + PV+IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62
Query: 1009 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1068
+K D + + L G A +HGGK QE+R A+ + + G KD+LVATDVA +G+D
Sbjct: 63 KKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPA 122
Query: 1069 VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1122
+ VINYDM + IE+Y HRIGRTG +G G+A +F K D + DLK +++ +
Sbjct: 123 IQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEA 177
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-30
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 262 YLRRPATVYIGS-------VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVN 314
+ + V +G+ +G + + Q V + E+ K L+E L + PV+IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62
Query: 315 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
+K D + + L G A +HGGK QE+R A+ + + G KD+L+A D S+
Sbjct: 63 KKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 2e-73
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 32/243 (13%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
+ + + + L + L+ +++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL
Sbjct: 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
+P+L ++L ++ + G +I++PTRELA Q E K G L++GG
Sbjct: 81 VPVL---EALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK 135
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+ + R+ I++ TPGRL+ ++ +VLDEADR++DMGF +
Sbjct: 136 DLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
++E +P K RQT++F+AT +V+ LAR L+ P
Sbjct: 195 VIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 963 VYI 965
V++
Sbjct: 230 VWV 232
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 2e-73
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 32/243 (13%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
+ + + + L + L+ +++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL
Sbjct: 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
+P+L ++L ++ + G +I++PTRELA Q E K G L++GG
Sbjct: 81 VPVL---EALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK 135
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+ + R+ I++ TPGRL+ ++ +VLDEADR++DMGF +
Sbjct: 136 DLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
++E +P K RQT++F+AT +V+ LAR L+ P
Sbjct: 195 VIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 1638 VYI 1640
V++
Sbjct: 230 VWV 232
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 1e-65
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 32/206 (15%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL+P+L ++L ++ +
Sbjct: 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL---EALYRLQWT--S 94
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
G +I++PTRELA Q E K G L++GG + + R+ I++ T
Sbjct: 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCT 153
Query: 122 PGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRL+ ++ +VLDEADR++DMGF + ++E +P
Sbjct: 154 PGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------- 200
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
K RQT++F+AT
Sbjct: 201 ------------KKRQTLLFSATQTK 214
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
K RQT++F+AT +V+ LAR L+ P V++
Sbjct: 201 KKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 2e-72
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 33/231 (14%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L EILE + G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------E 61
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
++A ++ + P A+++ PTRELA Q+ E ++ V V GG +Q L
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLR 119
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------ 173
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
RQT++F+AT+P +RLA Y++ P + +
Sbjct: 174 -------------------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 2e-72
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 33/231 (14%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L EILE + G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------E 61
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
++A ++ + P A+++ PTRELA Q+ E ++ V V GG +Q L
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLR 119
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------ 173
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
RQT++F+AT+P +RLA Y++ P + +
Sbjct: 174 -------------------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 4e-64
Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+ ++A ++
Sbjct: 16 LHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------ERLAPSQER 69
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++ PTRELA Q+ E ++ V V GG +Q L G + V+AT
Sbjct: 70 GRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVAT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 128 PGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP-------------- 173
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPA 207
RQT++F+AT+P
Sbjct: 174 -----------PSRQTLLFSATLPSW 188
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
RQT++F+AT+P +RLA Y++ P + +
Sbjct: 174 PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 5e-71
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM------- 63
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG----TPLGIRTVLVVGGLSREEQGF 850
+++ A+I APTRELA QI ET K I ++GG +++
Sbjct: 64 --EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121
Query: 851 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-- 179
Query: 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 180 -----------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 5e-71
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM------- 63
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG----TPLGIRTVLVVGGLSREEQGF 1525
+++ A+I APTRELA QI ET K I ++GG +++
Sbjct: 64 --EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121
Query: 1526 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-- 179
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 180 -----------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 1e-62
Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++ +++
Sbjct: 19 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM---------EKIKPE 69
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFG----TPLGIRTVLVVGGLSREEQGFRLRLGCEI 117
A+I APTRELA QI ET K I ++GG +++ +L + I
Sbjct: 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 177
VI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP---------- 179
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPA--KILE-YM 213
K Q ++F+AT+P L+ YM
Sbjct: 180 ---------------KDLQMLVFSATIPEKLKPFLKKYM 203
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 2e-69
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 32/234 (13%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
+ L+ I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P + + +
Sbjct: 60 LVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV---ELI 116
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
K+ M G +I++PTRELA Q + T L++GG +R + +L
Sbjct: 117 VKLRFMPR--NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG 174
Query: 854 LGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 912
G I++ATPGRL+D ++N + +V+DEADR++D+GFE ++++I++ +P
Sbjct: 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP---- 230
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 231 ---------------------TRRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 2e-69
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 32/234 (13%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
+ L+ I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P + + +
Sbjct: 60 LVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV---ELI 116
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
K+ M G +I++PTRELA Q + T L++GG +R + +L
Sbjct: 117 VKLRFMPR--NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG 174
Query: 1529 LGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587
G I++ATPGRL+D ++N + +V+DEADR++D+GFE ++++I++ +P
Sbjct: 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP---- 230
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 231 ---------------------TRRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 4e-63
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 31/206 (15%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P + + + K+ M
Sbjct: 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV---ELIVKLRFMPR- 124
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
G +I++PTRELA Q + T L++GG +R + +L G I++AT
Sbjct: 125 -NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 183
Query: 122 PGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRL+D ++N + +V+DEADR++D+GFE ++++I++ +P
Sbjct: 184 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------- 230
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
RQT++F+AT
Sbjct: 231 ------------TRRQTMLFSATQTR 244
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 6e-68
Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 35/236 (14%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL- 62
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 847
R++ A+++ PTRELA Q+ + + + G + + GG + +
Sbjct: 63 --------ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 6e-68
Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 35/236 (14%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL- 62
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 1522
R++ A+++ PTRELA Q+ + + + G + + GG + +
Sbjct: 63 --------ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 4e-60
Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 35/207 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL R++
Sbjct: 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL---------ERLDLK 68
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A+++ PTRELA Q+ + + + G + + GG + + RL +VIA
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------- 175
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPA 207
K RQ ++++AT P +
Sbjct: 176 ------------KNRQILLYSATFPLS 190
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 6e-66
Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 6/189 (3%)
Query: 1627 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQK 1685
+ + + G +E I Q V + E DKR L+++LN G ++FV K
Sbjct: 1 MHHHHHH----ENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
Query: 1686 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745
KGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+DI +V
Sbjct: 57 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 116
Query: 1746 MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPE 1805
VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ + P
Sbjct: 117 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA-KQEVPSW 175
Query: 1806 LLNHPDAQH 1814
L N H
Sbjct: 176 LENMAYEHH 184
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 4e-65
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 952 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQK 1010
+ + + G +E I Q V + E DKR L+++LN G ++FV K
Sbjct: 1 MHHHHHH----ENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
Query: 1011 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070
KGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+DI +V
Sbjct: 57 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 116
Query: 1071 MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120
VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++
Sbjct: 117 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 258 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQK 316
+ + + G +E I Q V + E DKR L+++LN G ++FV K
Sbjct: 1 MHHHHHH----ENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
Query: 317 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
KGAD L L GY ++HG + Q RE AL+ + G IL+A +R
Sbjct: 57 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-64
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 35/241 (14%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 71 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 121
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 122 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
+P Q V+ +ATMP V + ++R P +
Sbjct: 181 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215
Query: 965 I 965
+
Sbjct: 216 V 216
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-64
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 35/241 (14%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 71 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 121
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 122 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
+P Q V+ +ATMP V + ++R P +
Sbjct: 181 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215
Query: 1640 I 1640
+
Sbjct: 216 V 216
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 3e-57
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 36/210 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ EP+ IQ++AI ++ D++ A++G+GKT F + L R++ +
Sbjct: 29 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL---------QRIDTS 79
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++APTRELA QI++ + I+ +GG S E LR +IV+ T
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGT 138
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D ++ R ++ +LDEAD M+ GF+ + +I +P
Sbjct: 139 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------- 184
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILE 211
Q V+ +ATMP +LE
Sbjct: 185 -----------PTTQVVLLSATMPND-VLE 202
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-64
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+ V N+ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 87 SIL---------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN 137
Query: 845 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+ +L+ IV+ TPGR+ D+L RYL VLDEAD M+ GF+ + +I
Sbjct: 138 VRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 198 FQKLN-------------------------TSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
Query: 964 YI 965
+
Sbjct: 233 LV 234
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-64
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+ V N+ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 87 SIL---------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN 137
Query: 1520 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+ +L+ IV+ TPGR+ D+L RYL VLDEAD M+ GF+ + +I
Sbjct: 138 VRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 198 FQKLN-------------------------TSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
Query: 1639 YI 1640
+
Sbjct: 233 LV 234
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 7e-57
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 36/211 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L ++E
Sbjct: 45 IYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL---------QQLEIE 95
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL-GCEIVIA 120
+ A+++APTRELAQQI++ G +G +GG + + +L+ IV+
Sbjct: 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 155
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR+ D+L RYL VLDEAD M+ GF+ + +I + +
Sbjct: 156 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------- 202
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILE 211
Q V+ +ATMP +LE
Sbjct: 203 ------------TSIQVVLLSATMPTD-VLE 220
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 2e-62
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 37/234 (15%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------- 73
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 853
++E ++M TRELA QI +E +F + ++ + GGLS ++ L+
Sbjct: 74 --QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131
Query: 854 LGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTN 911
C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 132 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--- 188
Query: 912 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+Q +MF+AT+ + + R +++ P +++
Sbjct: 189 ----------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 2e-62
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 37/234 (15%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------- 73
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 1528
++E ++M TRELA QI +E +F + ++ + GGLS ++ L+
Sbjct: 74 --QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131
Query: 1529 LGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTN 1586
C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 132 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--- 188
Query: 1587 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+Q +MF+AT+ + + R +++ P +++
Sbjct: 189 ----------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 2e-54
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 29 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 79
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCE-IVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 139
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 140 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 188
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPA 207
+Q +MF+AT+
Sbjct: 189 --------------HEKQVMMFSATLSKE 203
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
+Q +MF+AT+ + + R +++ P +++
Sbjct: 191 KQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 1e-61
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L +LE + G+ P+P+Q +AIP+G D+I A++G+GKT F L
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL------- 83
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 853
+ + +I+APTRE+A QI G + G+ + +GG + RL+
Sbjct: 84 --DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNL 912
C I + +PGR+ ++E YL +LDEAD++++ G F+ + I +P
Sbjct: 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP---- 196
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
+Q + +AT P + Y+R P V + S
Sbjct: 197 ---------------------ASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 1e-61
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L +LE + G+ P+P+Q +AIP+G D+I A++G+GKT F L
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL------- 83
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 1528
+ + +I+APTRE+A QI G + G+ + +GG + RL+
Sbjct: 84 --DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNL 1587
C I + +PGR+ ++E YL +LDEAD++++ G F+ + I +P
Sbjct: 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP---- 196
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
+Q + +AT P + Y+R P V + S
Sbjct: 197 ---------------------ASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 2e-54
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 38/212 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ P+P+Q +AIP+G D+I A++G+GKT F L +
Sbjct: 39 LRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL---------DSLVLE 89
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ +I+APTRE+A QI G + G+ + +GG + RL+ C I +
Sbjct: 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVG 148
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNLKPDTEDAE 179
+PGR+ ++E YL +LDEAD++++ G F+ + I +P
Sbjct: 149 SPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------ 196
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILE 211
+Q + +AT P +
Sbjct: 197 -------------ASKQMLAVSATYPEF-LAN 214
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273
+Q + +AT P + Y+R P V + S
Sbjct: 199 KQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 1e-53
Identities = 63/329 (19%), Positives = 138/329 (41%), Gaps = 42/329 (12%)
Query: 642 AGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDE 701
+ + Q+ L++ + + + V+ ++ ++++ +DR
Sbjct: 6 WALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKL 65
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
+ + + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 66 IRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPL 125
Query: 762 GLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA
Sbjct: 126 MLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELAL 176
Query: 820 QIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVL 877
Q + + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 233
Query: 878 NQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 936
+ VLDEAD MI G + +I +P +
Sbjct: 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNC 268
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYI 965
Q ++F+AT +V + A+ + P + +
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 1e-53
Identities = 63/329 (19%), Positives = 138/329 (41%), Gaps = 42/329 (12%)
Query: 1317 AGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDE 1376
+ + Q+ L++ + + + V+ ++ ++++ +DR
Sbjct: 6 WALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKL 65
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
+ + + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 66 IRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPL 125
Query: 1437 GLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA
Sbjct: 126 MLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELAL 176
Query: 1495 QIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVL 1552
Q + + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 233
Query: 1553 NQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 1611
+ VLDEAD MI G + +I +P +
Sbjct: 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNC 268
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYI 1640
Q ++F+AT +V + A+ + P + +
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 9e-47
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 43/216 (19%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+ +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVE 157
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIV 118
A++ P + ++PT ELA Q + + G ++ V G E ++ +IV
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIV 214
Query: 119 IATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTE 176
I TPG ++D +++ + VLDEAD MI G + +I +P
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------- 265
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEY 212
+ Q ++F+AT + + ++
Sbjct: 266 ----------------RNCQMLLFSATFEDS-VWKF 284
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-51
Identities = 62/146 (42%), Positives = 82/146 (56%)
Query: 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
T IE V + E++K L +VL IIF K+ + L L+ LGY +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
GG QE R +N K G LVATDVA RGIDI+++S+VINYD+ E Y HR GRT
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
GRAG +G A+SF T + D+++
Sbjct: 127 GRAGNKGKAISFVTAFEKRFLADIEE 152
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-51
Identities = 62/146 (42%), Positives = 82/146 (56%)
Query: 1647 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
T IE V + E++K L +VL IIF K+ + L L+ LGY +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
GG QE R +N K G LVATDVA RGIDI+++S+VINYD+ E Y HR GRT
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
GRAG +G A+SF T + D+++
Sbjct: 127 GRAGNKGKAISFVTAFEKRFLADIEE 152
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 2e-17
Identities = 30/87 (34%), Positives = 40/87 (45%)
Query: 278 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
T IE V + E++K L +VL IIF K+ + L L+ LGY +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGD 364
GG QE R +N K G L+A D
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATD 93
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 8e-51
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 973 ERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
++I Q Y + + K L+ +L + I+FV +++ LA L + G N C L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G Q +R A+ L G ++LVATDVA RGIDI DVS V N+DM +S + Y HRIGRT
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYD 1114
RAG++G A+S D L
Sbjct: 122 ARAGRKGTAISLVEAHDHLLLGK 144
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 8e-51
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 1648 ERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
++I Q Y + + K L+ +L + I+FV +++ LA L + G N C L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G Q +R A+ L G ++LVATDVA RGIDI DVS V N+DM +S + Y HRIGRT
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYD 1789
RAG++G A+S D L
Sbjct: 122 ARAGRKGTAISLVEAHDHLLLGK 144
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 8e-16
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 279 ERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
++I Q Y + + K L+ +L + I+FV +++ LA L + G N C L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGD 364
G Q +R A+ L G ++L+A D
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATD 88
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-47
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R G
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 123
Query: 1093 RAGKEGLAVSFCT-KDDSHLFYDLKQ 1117
R G +GLA++F + ++D+ + D++
Sbjct: 124 RFGTKGLAITFVSDENDAKILNDVQD 149
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-47
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R G
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 123
Query: 1768 RAGKEGLAVSFCT-KDDSHLFYDLKQ 1792
R G +GLA++F + ++D+ + D++
Sbjct: 124 RFGTKGLAITFVSDENDAKILNDVQD 149
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-14
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 338
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 339 GKGQEQRELALNSLKGGSKDILMAGD 364
G QE+R K + IL+A +
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATN 89
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 47/144 (32%), Positives = 73/144 (50%)
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q +RE L + + G +LVATDVA RG+DI V +V++Y + E Y HR GRTGR
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQ 1117
AG+ G V + L++
Sbjct: 125 AGRGGRVVLLYGPRERRDVEALER 148
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 47/144 (32%), Positives = 73/144 (50%)
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q +RE L + + G +LVATDVA RG+DI V +V++Y + E Y HR GRTGR
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQ 1792
AG+ G V + L++
Sbjct: 125 AGRGGRVVLLYGPRERRDVEALER 148
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 280 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 340 KGQEQRELALNSLKGGSKDILMAGD 364
Q +RE L + + G +L+A D
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATD 89
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 973 ERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
E I+Q V + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
GR G++G+A++F T +D +L++
Sbjct: 122 GRFGRKGVAINFVTNEDVGAMRELEK 147
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-43
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 1648 ERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
E I+Q V + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
GR G++G+A++F T +D +L++
Sbjct: 122 GRFGRKGVAINFVTNEDVGAMRELEK 147
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 279 ERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
E I+Q V + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
Q++R+ + + GS IL++ D +R
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTDLLAR 92
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-42
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNAC 1028
I Q Y+L E K K + L G IIF ++ A L + + G+
Sbjct: 6 NNIRQY-YVLCEHRKDK--YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 1029 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIE 1082
L G EQR + + G + +L+ T+V RGID+K V++V+N+D+ E
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYE 122
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
Y HRIGRTGR GK+GLA + D+ ++
Sbjct: 123 TYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-42
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNAC 1703
I Q Y+L E K K + L G IIF ++ A L + + G+
Sbjct: 6 NNIRQY-YVLCEHRKDK--YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIE 1757
L G EQR + + G + +L+ T+V RGID+K V++V+N+D+ E
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYE 122
Query: 1758 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
Y HRIGRTGR GK+GLA + D+ ++
Sbjct: 123 TYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNAC 334
I Q Y+L E K K + L G IIF ++ A L + + G+
Sbjct: 6 NNIRQY-YVLCEHRKDK--YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 335 TLHGGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
L G EQR + + G + +L+ + +R
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 5e-42
Identities = 47/143 (32%), Positives = 73/143 (51%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
Q +RE + + + G +LVATDVA RG+DI V +V++Y M E Y HR GRTGRA
Sbjct: 63 SQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122
Query: 1095 GKEGLAVSFCTKDDSHLFYDLKQ 1117
G+ G V + L++
Sbjct: 123 GRGGRVVLLYGPRERRDVEALER 145
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 5e-42
Identities = 47/143 (32%), Positives = 73/143 (51%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
Q +RE + + + G +LVATDVA RG+DI V +V++Y M E Y HR GRTGRA
Sbjct: 63 SQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQ 1792
G+ G V + L++
Sbjct: 123 GRGGRVVLLYGPRERRDVEALER 145
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 341 GQEQRELALNSLKGGSKDILMAGD 364
Q +RE + + + G +L+A D
Sbjct: 63 SQGERERVMGAFRQGEVRVLVATD 86
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 1e-18
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
K + Q I + K KL E++ R +I+F N ++ A + L K G
Sbjct: 327 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386
Query: 1026 NACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
A G G Q +++L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 446
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
S R GRTGR G + K Y
Sbjct: 447 VPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAYYWSSR 486
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 1e-18
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
K + Q I + K KL E++ R +I+F N ++ A + L K G
Sbjct: 327 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386
Query: 1701 NACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
A G G Q +++L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 446
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
S R GRTGR G + K Y
Sbjct: 447 VPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAYYWSSR 486
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-14
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+P Q + + + V TG GKTL ++ IA G +
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVL 56
Query: 69 IMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 127
++APT+ L Q E F P ++ + G E+ + ++++ATP + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 128 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
L + L + IV DEA R + + +
Sbjct: 115 DLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-14
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+P Q + + + V TG GKTL ++ IA G +
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVL 56
Query: 810 IMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 868
++APT+ L Q E F P ++ + G E+ + ++++ATP + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 869 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
L + L + IV DEA R + + +
Sbjct: 115 DLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 2e-14
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+P Q + + + V TG GKTL ++ IA G +
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVL 56
Query: 1485 IMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
++APT+ L Q E F P ++ + G E+ + ++++ATP + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 1544 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
L + L + IV DEA R + + +
Sbjct: 115 DLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-15
Identities = 81/457 (17%), Positives = 157/457 (34%), Gaps = 102/457 (22%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWI 1465
E + I +++ G P Q +A+ G+ + ++ + T SGKTL + ++
Sbjct: 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV--- 61
Query: 1466 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 1525
G A+ + P + LA++ +E + +G+R + G ++
Sbjct: 62 -------HRILTQGGK-AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKD--- 109
Query: 1526 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+I+IAT + +L + + +V DE I + D LE + +
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE----IHLIGSRDRGATLE-VILA 164
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 1645
++ Q + +AT+ E LA +L A + + +
Sbjct: 165 HMLGKA--------------------QIIGLSATIGNPEE-LAE-WLN--AELIVSDW-R 199
Query: 1646 PTERIEQIVYI---LSEQDKRKKLMEVLNRGV------KKPVIIFVNQKKGADVLAKGL- 1695
P + + + V+ ++ +D V KK +IFVN ++ A+ +A L
Sbjct: 200 PVK-LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELS 258
Query: 1696 --------------------------------EKLGYNACTLHGGKGQEQRELALNSLKG 1723
+ + H G G+++R L + +
Sbjct: 259 KKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318
Query: 1724 GSKDILVATDVAGRGID-------IKDVSMVINYDMAK-SIEDYTHRIGRTGRAG--KEG 1773
G +VAT GI+ I+D+ ++ M + I + +GR GR + G
Sbjct: 319 GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378
Query: 1774 LAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1810
+ T DD I +L N
Sbjct: 379 EGIIVSTSDDPREVM---NHYIFGKPEKLFSQLSNES 412
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 4e-15
Identities = 78/447 (17%), Positives = 155/447 (34%), Gaps = 99/447 (22%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWI 790
E + I +++ G P Q +A+ G+ + ++ + T SGKTL + ++
Sbjct: 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV--- 61
Query: 791 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850
G A+ + P + LA++ +E + +G+R + G ++
Sbjct: 62 -------HRILTQGGK-AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKD--- 109
Query: 851 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+I+IAT + +L + + +V DE I + D LE + +
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE----IHLIGSRDRGATLE-VILA 164
Query: 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 970
++ Q + +AT+ E LA +L A + + +
Sbjct: 165 HMLGKA--------------------QIIGLSATIGNPEE-LAE-WLN--AELIVSDW-R 199
Query: 971 PTERIEQIVYI---LSEQDKRKKLMEVLNRGV------KKPVIIFVNQKKGADVLAKGL- 1020
P + + + V+ ++ +D V KK +IFVN ++ A+ +A L
Sbjct: 200 PVK-LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELS 258
Query: 1021 --------------------------------EKLGYNACTLHGGKGQEQRELALNSLKG 1048
+ + H G G+++R L + +
Sbjct: 259 KKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318
Query: 1049 GSKDILVATDVAGRGID-------IKDVSMVINYDMAK-SIEDYTHRIGRTGRAG--KEG 1098
G +VAT GI+ I+D+ ++ M + I + +GR GR + G
Sbjct: 319 GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378
Query: 1099 LAVSFCTKDDSHLFYDLKQMMISSPVT 1125
+ T DD + +
Sbjct: 379 EGIIVSTSDDPREVMNHYIFGKPEKLF 405
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-06
Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+++ G P Q +A+ G+ + ++ + T SGKTL + ++
Sbjct: 15 TLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV----------HRI 64
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
G A+ + P + LA++ +E + +G+R + G ++ +I+I
Sbjct: 65 LTQGGK-AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKD---EWLGKYDIII 119
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
AT + +L + + +V DE I + D LE + + ++ +
Sbjct: 120 ATAEKFDSLLRHGSSWIKDVKILVADE----IHLIGSRDRGATLE-VILAHMLGKAQ 171
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-14
Identities = 75/437 (17%), Positives = 157/437 (35%), Gaps = 90/437 (20%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+G ++ + P R LA + E K+ +G+R + G ++
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLG-- 113
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
C+I++ T + ++ NR + + +V+DE ++D LE + VT ++
Sbjct: 114 -DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI-HLLD---SEKRGATLE-ILVTKMR 167
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA--------VERLARSYLRRPATVYI 965
K + + +AT P + + RP +
Sbjct: 168 -----------------RMNKALRVIGLSATAPNVTEIAEWLDADYYVSDW--RPVPLVE 208
Query: 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
G + + T + + S + K ++L+E V++F + ++GA+ A L +
Sbjct: 209 GVLCEGTLELFDGAFSTSRRVKFEELVEECVAE-NGGVLVFESTRRGAEKTAVKLSAITA 267
Query: 1026 NACT------------------------------LHGGKGQEQRELALNSLKGGSKDILV 1055
H G QR + ++ + G+ ++V
Sbjct: 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327
Query: 1056 ATDVAGRGID-------IKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTK 1106
AT G++ ++ + Y + +Y GR GR G + G A+ K
Sbjct: 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387
Query: 1107 DDSHLFYDLKQMMISSP 1123
D + K+ + P
Sbjct: 388 RDREIAV--KRYIFGEP 402
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-14
Identities = 75/437 (17%), Positives = 157/437 (35%), Gaps = 90/437 (20%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+G ++ + P R LA + E K+ +G+R + G ++
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLG-- 113
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
C+I++ T + ++ NR + + +V+DE ++D LE + VT ++
Sbjct: 114 -DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI-HLLD---SEKRGATLE-ILVTKMR 167
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA--------VERLARSYLRRPATVYI 1640
K + + +AT P + + RP +
Sbjct: 168 -----------------RMNKALRVIGLSATAPNVTEIAEWLDADYYVSDW--RPVPLVE 208
Query: 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
G + + T + + S + K ++L+E V++F + ++GA+ A L +
Sbjct: 209 GVLCEGTLELFDGAFSTSRRVKFEELVEECVAE-NGGVLVFESTRRGAEKTAVKLSAITA 267
Query: 1701 NACT------------------------------LHGGKGQEQRELALNSLKGGSKDILV 1730
H G QR + ++ + G+ ++V
Sbjct: 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327
Query: 1731 ATDVAGRGID-------IKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTK 1781
AT G++ ++ + Y + +Y GR GR G + G A+ K
Sbjct: 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387
Query: 1782 DDSHLFYDLKQMMISSP 1798
D + K+ + P
Sbjct: 388 RDREIAV--KRYIFGEP 402
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------- 66
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+G ++ + P R LA + E K+ +G+R + G ++ C+I++
Sbjct: 67 --KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLG---DCDIIVT 120
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDE 146
T + ++ NR + + +V+DE
Sbjct: 121 TSEKADSLIRNRASWIKAVSCLVVDE 146
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 4e-14
Identities = 103/611 (16%), Positives = 188/611 (30%), Gaps = 179/611 (29%)
Query: 1272 KKRRVRRLNDRKFVFDWDAS--ED------TSVDYNSIYKERHQVQFFGRGNIAGIDIKA 1323
+ + + + + FV ++D +D + + + I + V R + +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--LFWTLLSK 74
Query: 1324 QKRDQSKFYGEMLEKRR---TEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTER 1380
Q+ KF E+L K +++ + E++ DR +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLY----------N 121
Query: 1381 DWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
D ++F Y+++ P ++A +LE+ R A + +
Sbjct: 122 DNQVFA-KYNVSR-----LQPYLKLRQA-----LLEL-------------RPAKNVLID- 156
Query: 1441 RDIIGVAETGSGKT-LAF----------LLPLLV-WIQSLPKIARMEDADQGPYAIIMAP 1488
GV GSGKT +A + + W+ + + ++
Sbjct: 157 ----GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCNSPET-----VLEM 201
Query: 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
++L QI+ SR + ++L + A RL+
Sbjct: 202 LQKLLYQIDPNWT-----------------SRSDHSSNIKLRIHSIQAELRRLL--KSKP 242
Query: 1549 YLVLNQCTYIVLDE-AD-RMIDMGFEPDVQ-KIL---EYMPVTN-LKPDTED-------- 1593
Y C +VL + + + F ++ KIL + VT+ L T
Sbjct: 243 Y---ENC-LLVLLNVQNAKAWNA-F--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 1594 ---AEDENK-LLANYNSKKKY---RQTVMFTATMPPAVERLARSYLRRPATV-YIGSVG- 1644
DE K LL Y + R+ + T P + +A S AT V
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 1645 -KPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFV---NQKKGADV--LAKGLE 1696
K T IE + +L + RK + V P I+ +DV + L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 1697 KLG-------YNACTLHGG----KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745
K + ++ K + + E AL+ +V + D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH-------RSIVDHYNIPKTFD----- 460
Query: 1746 MVINYDMAKSIED---YTHRIGR-TGRAGKEGLAVSFCTKDDSHLFYD---LKQMMI-SS 1797
+ D+ D Y+H IG F +F D L+Q + S
Sbjct: 461 ---SDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDS 511
Query: 1798 PVSTCPPELLN 1808
+LN
Sbjct: 512 TAWNASGSILN 522
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-10
Identities = 98/655 (14%), Positives = 181/655 (27%), Gaps = 191/655 (29%)
Query: 894 MGFEPDVQ-----KILE-YMP--VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 945
M FE IL + V N D +D +D K + SK++ +M
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSIL---SKEEIDHIIM----S 57
Query: 946 PPAVERLAR---SYLRRPATVY---IGSVGKP-----TERIEQIVYILSEQDKRKKLMEV 994
AV R + L + + + V + I + + +E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQR-QPSMMTRMYIEQ 115
Query: 995 LNRGVKKPVII---FVNQKKGADVLAKGLEKLGYNA-CTLHGGKGQEQRELALNSLKGGS 1050
+R + V++ + L + L +L + G G + +AL+ S
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--S 173
Query: 1051 KDILVATDVA------GRGIDIKDVSMVIN---YDMAK---SIEDYTHRIGRTGRAGKEG 1098
+ D + V ++ Y + S D++ I + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 1099 LAVSFCTK---------DD----SHL--FYDLK-QMMI-----------SSPVTGRAGKE 1131
L +K + F +L ++++ S+ T +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1132 GLAVSFCTKDDS-HLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRS 1190
+++ T D+ L LK + P E+L P + + +
Sbjct: 293 HHSMTL-TPDEVKSLL--LK--YLDCRPQDLPREVL-----TTNPRRLSIIAES------ 336
Query: 1191 PARKRRSRSRDRDYDRRFKRKKSPQCEAQSS----------------RFSACS-LPRSHK 1233
RD + K C+ ++ F S P S
Sbjct: 337 ----------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 1234 -SSSLLSRY----SEQDPEE--KEL------NKDKEREGEAIKERYLGLVKKKRRVRRLN 1280
+ LLS + D +L K + +I YL L K L+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 1281 DRKFV--------FDWDASEDTSVD-YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKF 1331
R V FD D +D Y Y G
Sbjct: 447 -RSIVDHYNIPKTFDSDDLIPPYLDQY--FY------SHIG------------------- 478
Query: 1332 YGEMLEKRRTEAEKEQEKV----RLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFRE 1387
+ + E V R + K R + W+ L+ + + ++
Sbjct: 479 H-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS---GSILNTLQ--QLKFYK- 531
Query: 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD 1442
Y I DP ++ + +I E + ++ T + + I L D
Sbjct: 532 PY-ICDN-----DPKYERLVNAILDFLPKIEENLICSKYTDL----LRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 3e-08
Identities = 59/459 (12%), Positives = 121/459 (26%), Gaps = 159/459 (34%)
Query: 15 RQAIPIGLQNRDII---GVAETGSGKT-LAF----------LLPLLV-WIQSLPKIARME 59
RQA+ + L+ + GV GSGKT +A + + W+ +
Sbjct: 141 RQAL-LELRPAKNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCN 193
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ ++ ++L QI+ SR + ++L +
Sbjct: 194 SPET-----VLEMLQKLLYQIDPNWT-----------------SRSDHSSNIKLRIHSIQ 231
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDE-AD-RMIDMGFEPDVQ-KILEYMPVTNLKPDTE 176
A RL+ Y C +VL + + + F ++ KIL +T T
Sbjct: 232 AELRRLL--KSKPY---ENC-LLVLLNVQNAKAWNA-F--NLSCKIL----LT-----TR 273
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMP-VTNLKPDT--EDAEDENKLLA 233
+ + L A + + T+ P ++ + + +P + N
Sbjct: 274 FKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 234 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK 293
+ + ++ + + + K T IE + +L +
Sbjct: 331 S-----------IIAESIRDGLATW--DNWKHV------NCDKLTTIIESSLNVLEPAEY 371
Query: 294 RK--KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 351
RK + V P +L + + + +N
Sbjct: 372 RKMFDRLSVFPPSAHIP----------TILL-----------SLIWFDVIKSDVMVVVNK 410
Query: 352 LKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLER 411
L S K+ S +
Sbjct: 411 L---------------HKYSLVEKQPKESTISIPS----------------------IYL 433
Query: 412 DRSREREREKRHHRR-------DRSKERDG--KDRREGY 441
+ + E E HR ++ + D + Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 6e-08
Identities = 60/546 (10%), Positives = 153/546 (28%), Gaps = 155/546 (28%)
Query: 449 EASGSKHKSRDKEGYEPTEQMVISD------EEEDKGAAAKKEPLSLEELLAKKKAEEEA 502
E +++ +D E + + ++ K +K+E ++ ++ K A
Sbjct: 10 ETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEE---IDHIIMSKDAVSGT 64
Query: 503 RSK-PKFLTKEERAAEALRKRQAEVEEMRKK-----MEEERKK-RQEFTKEASFESKREN 555
L+K+E + VEE+ + M + + RQ + +R+
Sbjct: 65 LRLFWTLLSKQEEMVQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD- 117
Query: 556 FDARLRRDRE--KKKEDPEEKELNKDKEREGEAIKERYLGL---------------VKKK 598
RL D + K + K ++ E + + +
Sbjct: 118 ---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 599 RRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG 658
+ +++ + +F W ++ N ++ ++ +
Sbjct: 175 KVQCKMDFK--IF-W-------LN-------------LKNCNSPETVLEMLQKLLYQIDP 211
Query: 659 EMLEK----RRTEAEKEQEKVRLKKVKKREEKQK--------WDDRHWTEKSLDE----- 701
+ + + L+++ K + + + + W + +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKIL 269
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASL-PTEILEIIEKIGYAEPTPIQRQAIP 760
+T R ++ D+ + + +L P E+ ++ K P + R+ +
Sbjct: 270 LTTRFKQVT--DF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 761 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
+ II G W + + D+ I + L
Sbjct: 325 TNPRRLSIIA-ESIRDGLAT--------WDNW-----KHVNCDKLTTIIESS----LNVL 366
Query: 821 IEEETNKFGTPLGI--------RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 872
E K L + +L + + +++ + +++ L
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSL-------------IWFDVIKSDVMVVVNKLHK 413
Query: 873 RYLVL---NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 929
LV + T + P + LE + ++ +Y
Sbjct: 414 YSLVEKQPKESTISI-------------PSIY--LEL-----KVKLENEYALHRSIVDHY 453
Query: 930 NSKKKY 935
N K +
Sbjct: 454 NIPKTF 459
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-04
Identities = 61/445 (13%), Positives = 118/445 (26%), Gaps = 142/445 (31%)
Query: 357 KDILMAGDRRSRSR-------SPPRKRRSR----SRERDYD----RVRERDTDRSRDDRG 401
I+M+ D S + S + + +Y ++ S R
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 402 RDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEAS--GSKHKSRD 459
RDRL D K + R + + R+ R + G
Sbjct: 112 YIEQRDRLYNDNQVFA---KYNVSRLQPYLK----LRQALLELRPAKNVLIDG------- 157
Query: 460 KEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKF---LTKEERAA 516
+ G+ K ++L+ L+ K + F L
Sbjct: 158 ---------V--------LGSG--KTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPE 196
Query: 517 EALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKEL 576
L Q + +++ R + + + A LRR L
Sbjct: 197 TVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRR-------------L 237
Query: 577 NKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFD---WDA----------SEDTSV-D 622
K K E L LV L + V + W+A + V D
Sbjct: 238 LKSKPY------ENCL-LV--------LLN---VQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 623 YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQ-SKFYGEMLEKRRTEAEKEQ-EKVRLKKV 680
+ S H + + + K+ + E ++ +
Sbjct: 280 FLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 681 KKREEKQKWDDRHWT-----------EKSLDEMTERDWR-------IFREDYSITIKGGK 722
R+ WD +W E SL+ + ++R +F
Sbjct: 336 SIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-------H 386
Query: 723 VPDPV--RNWKEASLPTEILEIIEK 745
+P + W + + ++++ ++ K
Sbjct: 387 IPTILLSLIWFD-VIKSDVMVVVNK 410
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 1e-13
Identities = 59/373 (15%), Positives = 98/373 (26%), Gaps = 98/373 (26%)
Query: 741 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800
E +E + + + A TGSGK+
Sbjct: 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYA------------- 254
Query: 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 860
QG +++ P+ +K GI + G + G +
Sbjct: 255 --AQGYKVLVLNPSVAATLGFGAYMSK---AHGIDPNIRTGVRTI-------TTGAPVTY 302
Query: 861 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 920
+T G+ L + I+ DE D + +L+
Sbjct: 303 STYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAE------------ 346
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980
++ AT P P I V
Sbjct: 347 -------------TAGARLVVLATATPPGSVTV------PHPN-IEEVALSNTGEIPF-- 384
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ +E + G +IF + KK D LA L LG NA + G
Sbjct: 385 -----YGKAIPIEAIRGGRH---LIFCHSKKKCDELAAKLSGLGINAVAYYRG------- 429
Query: 1041 LALNSLKGGSKDILVATDVAGRG--IDIK-------DVSMVINYDMAK-----------S 1080
L ++ + ++VATD G D V+ +++ +
Sbjct: 430 LDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489
Query: 1081 IEDYTHRIGRTGR 1093
+ R GRTGR
Sbjct: 490 AVSRSQRRGRTGR 502
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 1e-13
Identities = 59/373 (15%), Positives = 98/373 (26%), Gaps = 98/373 (26%)
Query: 1416 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 1475
E +E + + + A TGSGK+
Sbjct: 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYA------------- 254
Query: 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 1535
QG +++ P+ +K GI + G + G +
Sbjct: 255 --AQGYKVLVLNPSVAATLGFGAYMSK---AHGIDPNIRTGVRTI-------TTGAPVTY 302
Query: 1536 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 1595
+T G+ L + I+ DE D + +L+
Sbjct: 303 STYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAE------------ 346
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 1655
++ AT P P I V
Sbjct: 347 -------------TAGARLVVLATATPPGSVTV------PHPN-IEEVALSNTGEIPF-- 384
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ +E + G +IF + KK D LA L LG NA + G
Sbjct: 385 -----YGKAIPIEAIRGGRH---LIFCHSKKKCDELAAKLSGLGINAVAYYRG------- 429
Query: 1716 LALNSLKGGSKDILVATDVAGRG--IDIK-------DVSMVINYDMAK-----------S 1755
L ++ + ++VATD G D V+ +++ +
Sbjct: 430 LDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489
Query: 1756 IEDYTHRIGRTGR 1768
+ R GRTGR
Sbjct: 490 AVSRSQRRGRTGR 502
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-13
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 24/187 (12%)
Query: 936 RQTVMFTATMPPAV-----ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 990
+ TAT L L P + I S +P R ++ + +
Sbjct: 175 LPFMALTATADDTTRQDIVRLLG---LNDPL-IQISSFDRPNIRYM----LMEKFKPLDQ 226
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
LM + K II+ N + + A L+ G +A H G R +
Sbjct: 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 1051 KDILVATDVA-GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
I+VAT VA G GI+ +V V+++D+ ++IE Y GR GR G A+
Sbjct: 287 LQIVVAT-VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM-------- 337
Query: 1110 HLFYDLK 1116
LFYD
Sbjct: 338 -LFYDPA 343
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-13
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 24/187 (12%)
Query: 1611 RQTVMFTATMPPAV-----ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665
+ TAT L L P + I S +P R ++ + +
Sbjct: 175 LPFMALTATADDTTRQDIVRLLG---LNDPL-IQISSFDRPNIRYM----LMEKFKPLDQ 226
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
LM + K II+ N + + A L+ G +A H G R +
Sbjct: 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 1726 KDILVATDVA-GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
I+VAT VA G GI+ +V V+++D+ ++IE Y GR GR G A+
Sbjct: 287 LQIVVAT-VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM-------- 337
Query: 1785 HLFYDLK 1791
LFYD
Sbjct: 338 -LFYDPA 343
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYA 67
+ P Q + L+ ++II TGSGKT A + + + + + A +
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI-----AKDH--LDKKKKASEPGKV 85
Query: 68 IIMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
I++ L Q +E F R + + G + + C+I+I+T L
Sbjct: 86 IVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILE 144
Query: 127 DVLENR------YLVLNQCTYIVLDEA 147
+ L N + L+ + I++DE
Sbjct: 145 NSLLNLENGEDAGVQLSDFSLIIIDEC 171
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYA 808
+ P Q + L+ ++II TGSGKT A + + + + + A +
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI-----AKDH--LDKKKKASEPGKV 85
Query: 809 IIMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 867
I++ L Q +E F R + + G + + C+I+I+T L
Sbjct: 86 IVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILE 144
Query: 868 DVLENR------YLVLNQCTYIVLDEA 888
+ L N + L+ + I++DE
Sbjct: 145 NSLLNLENGEDAGVQLSDFSLIIIDEC 171
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYA 1483
+ P Q + L+ ++II TGSGKT A + + + + + A +
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI-----AKDH--LDKKKKASEPGKV 85
Query: 1484 IIMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
I++ L Q +E F R + + G + + C+I+I+T L
Sbjct: 86 IVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILE 144
Query: 1543 DVLENR------YLVLNQCTYIVLDEA 1563
+ L N + L+ + I++DE
Sbjct: 145 NSLLNLENGEDAGVQLSDFSLIIIDEC 171
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 85/466 (18%), Positives = 157/466 (33%), Gaps = 115/466 (24%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAF 782
P+ + K LP+ ++EII+K G + P Q +A+ GL + ++ + TGSGKTL
Sbjct: 7 WMPIEDLK---LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA 63
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+ I + G AI + P R L + + +G + + G
Sbjct: 64 EMG----------IISFLLKNGGK-AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGD 111
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQ 901
++ + +I+I T +L D L LN+ Y VLDE + +P+
Sbjct: 112 YDTDDAWLK---NYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDE----LHYLNDPERG 163
Query: 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR------- 954
++E + + K R + +AT+ + +A+
Sbjct: 164 PVVESV-TI---------------------RAKRRNLLALSATISNYKQ-IAKWLGAEPV 200
Query: 955 --SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV------KKPVIIF 1006
++ RP + G + ++ E V K+ + + V++F
Sbjct: 201 ATNW--RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVF 258
Query: 1007 VNQKKG----ADVLAKGLEKLGYNACTL-------------------------------- 1030
N +K A +A + + + L
Sbjct: 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYH 318
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATD------------VAGRGIDIKDVSMVINYDMA 1078
H G + R+L + ++VAT V I + + YD
Sbjct: 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378
Query: 1079 KSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHLFYDLKQMMISSP 1123
I +Y GR GR G + + S +D + K+ ++S
Sbjct: 379 -PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDV 423
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 85/466 (18%), Positives = 157/466 (33%), Gaps = 115/466 (24%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAF 1457
P+ + K LP+ ++EII+K G + P Q +A+ GL + ++ + TGSGKTL
Sbjct: 7 WMPIEDLK---LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA 63
Query: 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517
+ I + G AI + P R L + + +G + + G
Sbjct: 64 EMG----------IISFLLKNGGK-AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGD 111
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQ 1576
++ + +I+I T +L D L LN+ Y VLDE + +P+
Sbjct: 112 YDTDDAWLK---NYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDE----LHYLNDPERG 163
Query: 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR------- 1629
++E + + K R + +AT+ + +A+
Sbjct: 164 PVVESV-TI---------------------RAKRRNLLALSATISNYKQ-IAKWLGAEPV 200
Query: 1630 --SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV------KKPVIIF 1681
++ RP + G + ++ E V K+ + + V++F
Sbjct: 201 ATNW--RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVF 258
Query: 1682 VNQKKG----ADVLAKGLEKLGYNACTL-------------------------------- 1705
N +K A +A + + + L
Sbjct: 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYH 318
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATD------------VAGRGIDIKDVSMVINYDMA 1753
H G + R+L + ++VAT V I + + YD
Sbjct: 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378
Query: 1754 KSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHLFYDLKQMMISSP 1798
I +Y GR GR G + + S +D + K+ ++S
Sbjct: 379 -PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDV 423
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
II+K G + P Q +A+ GL + ++ + TGSGKTL + I
Sbjct: 22 IIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG----------IISFL 71
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ G AI + P R L + + +G + + G ++ + +I+I
Sbjct: 72 LKNGGK-AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWLK---NYDIII 126
Query: 120 ATPGRLIDVLENRYL-VLNQCTYIVLDE 146
T +L D L LN+ Y VLDE
Sbjct: 127 TTYEKL-DSLWRHRPEWLNEVNYFVLDE 153
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 7e-11
Identities = 21/115 (18%), Positives = 38/115 (33%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
RR R R + + D + G D E+ R R+RER + H
Sbjct: 299 ARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSH 358
Query: 424 HRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDK 478
+ +DR +R E + + ++R G + + ++ D
Sbjct: 359 RSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDM 413
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 8e-11
Identities = 26/112 (23%), Positives = 40/112 (35%)
Query: 353 KGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
+GG D+ + D + RD DR R R R +RD
Sbjct: 310 RGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRD 369
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYE 464
R R+R+RE + R + RD G + E + S+ + EG +
Sbjct: 370 RDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGD 421
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 4e-10
Identities = 18/106 (16%), Positives = 32/106 (30%)
Query: 363 GDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKR 422
R R+R+ R D + + D G + D E+ R++
Sbjct: 292 SSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRD 351
Query: 423 HHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQ 468
RR + + R R+R E G + R ++
Sbjct: 352 RERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGG 397
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 4e-10
Identities = 18/105 (17%), Positives = 33/105 (31%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
+R R R + R + D ++ R+R+RE+R
Sbjct: 297 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 356
Query: 424 HRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQ 468
R + R +DR RE + E + + + G +
Sbjct: 357 SHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDN 401
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 5e-10
Identities = 21/117 (17%), Positives = 35/117 (29%)
Query: 363 GDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKR 422
R R RK R D E D + D + + R+R++
Sbjct: 294 RSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE 353
Query: 423 HHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKG 479
R RS+ +DR R+R + + RD+ Q + +
Sbjct: 354 RRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDS 410
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 5e-10
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 15/230 (6%)
Query: 363 GDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKR 422
R P R R R+R+ +R +R R R RDR R RSR++E +R
Sbjct: 217 SRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRR 276
Query: 423 HHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAA 482
R + K+RD K R R R E + + + EP+E ++
Sbjct: 277 SRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPP---- 332
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
+ + + K ++ + R + + + + +R+ ++
Sbjct: 333 -----------GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRG 381
Query: 543 FTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYL 592
+ E D + + + A + YL
Sbjct: 382 ERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYL 431
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 4e-09
Identities = 28/205 (13%), Positives = 52/205 (25%), Gaps = 1/205 (0%)
Query: 353 KGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
R R + + R R R R R R + + R ++D
Sbjct: 226 SPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD 285
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKH-KSRDKEGYEPTEQMVI 471
R R+R + R R +ER + R G E + G + +
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345
Query: 472 SDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRK 531
+ D+ + + + K E EA + +
Sbjct: 346 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEG 405
Query: 532 KMEEERKKRQEFTKEASFESKRENF 556
+ R E + + +
Sbjct: 406 LGNDSRDMYMESEGGDGYLAPENGY 430
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 28/224 (12%), Positives = 56/224 (25%), Gaps = 1/224 (0%)
Query: 330 GYNACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVR 389
G + + + + + + ++ R + R R R R R R +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDK 271
Query: 390 ERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEE 449
E + +DRDR R RSRER R +R + + ++
Sbjct: 272 EERRRSRERSKDKDRDRKR-RSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDG 330
Query: 450 ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFL 509
G E + ++ + ++ E S+
Sbjct: 331 PPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRD 390
Query: 510 TKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKR 553
+ + R E E + +
Sbjct: 391 EARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEA 434
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 68/411 (16%), Positives = 130/411 (31%), Gaps = 98/411 (23%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
Q +A+ L ++ V TGSGKT +A + + +
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-------------MAAINELSTP--TL 137
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP---GRL 866
I+ PT LA+Q +E FG V G +E + + ++T
Sbjct: 138 IVVPTLALAEQWKERLGIFG----EEYVGEFSGRIKELKP--------LTVSTYDSAYVN 185
Query: 867 IDVLENRY-------------------LVLNQCTYIV--------LDEADRMIDMGFEPD 899
+ L NR+ ++ + + D ++
Sbjct: 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGK 245
Query: 900 VQKI------------LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947
V ++ + + E E E + K++ + T
Sbjct: 246 VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKR----EKVYKQFLRARGITLRRAE 301
Query: 948 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 1007
++ + + RI + ++K +KL E+L R K +IIF
Sbjct: 302 DFNKIVMASGYDERAYEALRAWEEARRI-----AFNSKNKIRKLREILERHRKDKIIIFT 356
Query: 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1067
+ ++K +E+RE L + G +V++ V GID+
Sbjct: 357 RHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVP 411
Query: 1068 DVSMVINYDMA---KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
D ++ + + S +Y R+GR R +G K ++ Y+L
Sbjct: 412 DANVGV---IMSGSGSAREYIQRLGRILRP-SKG-------KKEAV-LYEL 450
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-10
Identities = 68/411 (16%), Positives = 130/411 (31%), Gaps = 98/411 (23%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
Q +A+ L ++ V TGSGKT +A + + +
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-------------MAAINELSTP--TL 137
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP---GRL 1541
I+ PT LA+Q +E FG V G +E + + ++T
Sbjct: 138 IVVPTLALAEQWKERLGIFG----EEYVGEFSGRIKELKP--------LTVSTYDSAYVN 185
Query: 1542 IDVLENRY-------------------LVLNQCTYIV--------LDEADRMIDMGFEPD 1574
+ L NR+ ++ + + D ++
Sbjct: 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGK 245
Query: 1575 VQKI------------LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622
V ++ + + E E E + K++ + T
Sbjct: 246 VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKR----EKVYKQFLRARGITLRRAE 301
Query: 1623 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 1682
++ + + RI + ++K +KL E+L R K +IIF
Sbjct: 302 DFNKIVMASGYDERAYEALRAWEEARRI-----AFNSKNKIRKLREILERHRKDKIIIFT 356
Query: 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742
+ ++K +E+RE L + G +V++ V GID+
Sbjct: 357 RHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVP 411
Query: 1743 DVSMVINYDMA---KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
D ++ + + S +Y R+GR R +G K ++ Y+L
Sbjct: 412 DANVGV---IMSGSGSAREYIQRLGRILRP-SKG-------KKEAV-LYEL 450
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 59/364 (16%), Positives = 112/364 (30%), Gaps = 62/364 (17%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
Q +A+ L ++ V TGSGKT +A + + +
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-------------MAAINELSTP--TL 137
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
I+ PT LA+Q +E F G V G +E + + ++T
Sbjct: 138 IVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKELKP--------LTVSTYDSA--- 182
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV--------TNLKPDTEDAED 180
N + N+ ++ DE + + +I + T + ED
Sbjct: 183 YVNAEKLGNRFMLLIFDEVHHLPAESY----VQIAQMSIAPFRLGLTAT---FERED--G 233
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+++L K + A AK L D ++ K+
Sbjct: 234 RHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEK-----REKVYKQ 288
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
+ + T ++ + + RI + ++K +KL E+
Sbjct: 289 FLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRI-----AFNSKNKIRKLREI 343
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
L R K +IIF + ++K +E+RE L + G +
Sbjct: 344 LERHRKDKIIIFTRHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAI 398
Query: 361 MAGD 364
++
Sbjct: 399 VSSQ 402
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA-GR 1062
II+ +K ++ + L+ LG +A H E + ++VAT VA G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGM 329
Query: 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK-----Q 1117
GID DV VI++ M+KS+E+Y GR GR + + L+Y
Sbjct: 330 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI---------LYYGFGDIFRIS 380
Query: 1118 MMISSPVTGRA 1128
M+ G+
Sbjct: 381 SMVVMENVGQQ 391
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA-GR 1737
II+ +K ++ + L+ LG +A H E + ++VAT VA G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGM 329
Query: 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
GID DV VI++ M+KS+E+Y GR GR + + L+Y
Sbjct: 330 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI---------LYYGFG 374
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 3e-10
Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 21/387 (5%)
Query: 713 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 772
Y I + K+ LEI EP Q+ A+ GL NR I
Sbjct: 76 GYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 135
Query: 773 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832
T +G++L L L ++ +I+ PT L Q+ ++ +
Sbjct: 136 PTSAGRSLIQAL--LARYYLENYEGKI---------LIIVPTTALTTQMADDFVDYRLFS 184
Query: 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892
+ GG + + + +V+ T ++ +Q ++ DE
Sbjct: 185 HAMIKKIGGG---ASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT 238
Query: 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY--NSKKKYRQTVMFTATMPPAVE 950
+ + M L D + K + + ++
Sbjct: 239 GKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298
Query: 951 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK 1010
+ E I+ I + KL L + + +
Sbjct: 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQK-DENAFVMFKHV 357
Query: 1011 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT-DVAGRGIDIKDV 1069
+ ++ + G E R + + G I+VA+ V GI +K++
Sbjct: 358 SHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGK 1096
V+ KS IGR R
Sbjct: 418 HHVVLAHGVKSKIIVLQTIGRVLRKHG 444
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 3e-10
Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 21/387 (5%)
Query: 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 1447
Y I + K+ LEI EP Q+ A+ GL NR I
Sbjct: 76 GYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 135
Query: 1448 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 1507
T +G++L L L ++ +I+ PT L Q+ ++ +
Sbjct: 136 PTSAGRSLIQAL--LARYYLENYEGKI---------LIIVPTTALTTQMADDFVDYRLFS 184
Query: 1508 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567
+ GG + + + +V+ T ++ +Q ++ DE
Sbjct: 185 HAMIKKIGGG---ASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT 238
Query: 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY--NSKKKYRQTVMFTATMPPAVE 1625
+ + M L D + K + + ++
Sbjct: 239 GKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298
Query: 1626 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK 1685
+ E I+ I + KL L + + +
Sbjct: 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQK-DENAFVMFKHV 357
Query: 1686 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT-DVAGRGIDIKDV 1744
+ ++ + G E R + + G I+VA+ V GI +K++
Sbjct: 358 SHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417
Query: 1745 SMVINYDMAKSIEDYTHRIGRTGRAGK 1771
V+ KS IGR R
Sbjct: 418 HHVVLAHGVKSKIIVLQTIGRVLRKHG 444
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-09
Identities = 48/325 (14%), Positives = 121/325 (37%), Gaps = 22/325 (6%)
Query: 387 RVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERR 446
+V ++ + D R ++R ++ + +E E++H + K + +
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 447 EEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA--KKKAEEEARS 504
EE + + E +EEE++ + E +++ + +++ EEE +
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 505 KPKFLTKEERAAEA----LRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARL 560
+ K L E+ A+ + +E+ K+ +ERK +E + + N
Sbjct: 971 RQK-LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT-----TNLAEEE 1024
Query: 561 RRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTS 620
+ + K + + + + E + ++ L K KR++ + + +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 621 VDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKV 680
+ K+ ++Q D +QK + K E LE ++ +++ E + +
Sbjct: 1085 ELKAQLAKKEEELQ---AALARLEDETSQKNNALKKIRE-LESHISDLQEDLESEKAARN 1140
Query: 681 KKREEKQKWDDRHWTEKSLDEMTER 705
K ++K+ + L+ +
Sbjct: 1141 KAEKQKRD------LSEELEALKTE 1159
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 37/244 (15%), Positives = 97/244 (39%), Gaps = 16/244 (6%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
++ + + + + E + R R + ++ + + + E E+
Sbjct: 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL-AAKKQELEEILHEMEARIEEEEERS 943
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSK----HKSRDKEGYEPTEQMVISDEEEDKGA 480
++ +++++ + + + EEEA+ K + D + + + ++I +++ +K
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 481 AAKKEPLSLEELLAKKKAE-EEARSKPKFLTKEERAAEALRKR-QAEVEEMRK-KMEEER 537
+K LEE ++ E K K LTK + E++ + +++ K + E E+
Sbjct: 1004 KERKL---LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 538 KKRQEFTKEASFESKRENFDARLRRDREK-KKEDPEEKELNKDKEREGEAIKERYLGLVK 596
KR+ + + + A++ + + K++ E + E E + +K
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE----TSQKNNALK 1116
Query: 597 KKRR 600
K R
Sbjct: 1117 KIRE 1120
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 28/207 (13%), Positives = 83/207 (40%), Gaps = 14/207 (6%)
Query: 379 RSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRR 438
+ E D + +++ +++ + + L + + E E+ K + E +
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 439 EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA 498
++E + + + + E S + ++ A + + L+ LAKK+
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGE----------SSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 499 E-EEARSKPKFLTKE-ERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENF 556
E + A ++ + T + A + +R+ ++ + ++++ +E E+ R + K+ + E
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR-DLSEELE 1154
Query: 557 DARLRRDREKKKEDPEEKELNKDKERE 583
+ + + ++EL ++
Sbjct: 1155 ALKTELE-DTLDTTATQQELRGSDYKD 1180
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 60.8 bits (146), Expect = 4e-09
Identities = 41/241 (17%), Positives = 79/241 (32%), Gaps = 13/241 (5%)
Query: 659 EMLEKRRTEAEKE----QEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY 714
L + ++KE ++ L + WD R K +D D +
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDS-EMTDASEDCLEA 212
Query: 715 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 774
S+T PD + S I + + Q + + ++ + A T
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPT 272
Query: 775 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
GSGKT +L Q++P + + +A + +Q + G
Sbjct: 273 GSGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMID 893
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385
Query: 894 M 894
Sbjct: 386 N 386
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 60.8 bits (146), Expect = 4e-09
Identities = 41/241 (17%), Positives = 79/241 (32%), Gaps = 13/241 (5%)
Query: 1334 EMLEKRRTEAEKE----QEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY 1389
L + ++KE ++ L + WD R K +D D +
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDS-EMTDASEDCLEA 212
Query: 1390 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 1449
S+T PD + S I + + Q + + ++ + A T
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPT 272
Query: 1450 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
GSGKT +L Q++P + + +A + +Q + G
Sbjct: 273 GSGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMID 1568
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385
Query: 1569 M 1569
Sbjct: 386 N 386
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 5e-07
Identities = 46/357 (12%), Positives = 105/357 (29%), Gaps = 32/357 (8%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+ Q + + ++ + A TGSGKT +L Q++P + +
Sbjct: 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-------GRKAKVV 300
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 301 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 360
Query: 129 LENRYLV-LNQCTYIVLDEADRMIDMGFE------------------PDVQKILEYMPVT 169
E+ L L+ T ++ DE P + + + V
Sbjct: 361 FEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
Query: 170 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDEN 229
N K E E L + + + + T ++ +M + N
Sbjct: 421 NAKNIEETIEHICSLCSYLDIQA------ISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474
Query: 230 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 289
A ++ + +M T + + ++ + V + R+ Q+
Sbjct: 475 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEE 534
Query: 290 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
E + L K + +++ L + N + ++
Sbjct: 535 ESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT 591
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 3e-06
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 986 DKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL------------GYNACT 1029
K ++L+ +L+ + ++F + L K +E+ G
Sbjct: 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672
Query: 1030 LHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1088
G ++ L++ K +L+AT VA GIDI ++V+ Y+ + ++
Sbjct: 673 QTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732
Query: 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
GR GRA + +K + +
Sbjct: 733 GR-GRA-AGSKCILVTSKTEVVENEKCNR 759
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 3e-06
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 1661 DKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL------------GYNACT 1704
K ++L+ +L+ + ++F + L K +E+ G
Sbjct: 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672
Query: 1705 LHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763
G ++ L++ K +L+AT VA GIDI ++V+ Y+ + ++
Sbjct: 673 QTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732
Query: 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
GR GRA + +K + +
Sbjct: 733 GR-GRA-AGSKCILVTSKTEVVENEKCNR 759
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-09
Identities = 22/210 (10%), Positives = 66/210 (31%), Gaps = 15/210 (7%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHR 425
++ PP+ + E Y+ ++ + R+ E D + +
Sbjct: 811 YKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 870
Query: 426 RDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKE 485
+ + + ++ ++ ++ + K + S+E D A + +
Sbjct: 871 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS------VYLGSNETGDSITAVQAK 924
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK 545
+LE + ++ E + A+ V E+ ++ + + +
Sbjct: 925 LKNLEAFDGECQSLEGQSNS----DLLSILAQLTELNYNGVPELTERKDTFFAQ-----Q 975
Query: 546 EASFESKRENFDARLRRDREKKKEDPEEKE 575
+S E + L + E+ ++ +
Sbjct: 976 WTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-08
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 985 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1032
+D L E + + I+FV + D L K +E+ G
Sbjct: 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRAT 433
Query: 1033 GKGQ-EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G Q+ + G +IL+AT VA GIDI + ++VI Y+ ++ GR
Sbjct: 434 GMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR- 492
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
GRA ++ + D +
Sbjct: 493 GRA-RDSKCFLLTSSADVIEKEKANMI 518
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-08
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1707
+D L E + + I+FV + D L K +E+ G
Sbjct: 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRAT 433
Query: 1708 GKGQ-EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G Q+ + G +IL+AT VA GIDI + ++VI Y+ ++ GR
Sbjct: 434 GMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR- 492
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
GRA ++ + D +
Sbjct: 493 GRA-RDSKCFLLTSSADVIEKEKANMI 518
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 14 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 73
Q + + ++ I A TG GKT LL + Q + A
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPCGQKGKVVFFANQ 61
Query: 74 REL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 132
+ QQ + F G + G S + +I+I TP L++ L N
Sbjct: 62 IPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 133 YLV-LNQCTYIVLDEADRM 150
+ L+ T ++ DE
Sbjct: 121 AIPSLSVFTLMIFDECHNT 139
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 755 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814
Q + + ++ I A TG GKT LL + Q + A
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPCGQKGKVVFFANQ 61
Query: 815 REL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 873
+ QQ + F G + G S + +I+I TP L++ L N
Sbjct: 62 IPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 874 YLV-LNQCTYIVLDEADRM 891
+ L+ T ++ DE
Sbjct: 121 AIPSLSVFTLMIFDECHNT 139
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 1430 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489
Q + + ++ I A TG GKT LL + Q + A
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPCGQKGKVVFFANQ 61
Query: 1490 REL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
+ QQ + F G + G S + +I+I TP L++ L N
Sbjct: 62 IPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 1549 YLV-LNQCTYIVLDEADRM 1566
+ L+ T ++ DE
Sbjct: 121 AIPSLSVFTLMIFDECHNT 139
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 4e-08
Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 11/238 (4%)
Query: 659 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY---S 715
L + ++KE L+ + + + + + + ED S
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEAS 213
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+T PD + S I + + Q + + ++ + A TG
Sbjct: 214 MTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTG 273
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT +L Q++P + + +A + +Q + G
Sbjct: 274 SGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMI 892
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 4e-08
Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 11/238 (4%)
Query: 1334 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY---S 1390
L + ++KE L+ + + + + + + ED S
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEAS 213
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+T PD + S I + + Q + + ++ + A TG
Sbjct: 214 MTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTG 273
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT +L Q++P + + +A + +Q + G
Sbjct: 274 SGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMI 1567
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 988 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKG 1035
L + + ++F + L K +E+ G G
Sbjct: 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT 678
Query: 1036 QEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
++ L++ K +L+AT VA GIDI ++V+ Y+ + ++ GR GRA
Sbjct: 679 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737
Query: 1095 GKEGLAVSFCTKDDSHLFYDLKQ 1117
+ +K + +
Sbjct: 738 -AGSKCILVTSKTEVVENEKCNR 759
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 1663 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKG 1710
L + + ++F + L K +E+ G G
Sbjct: 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT 678
Query: 1711 QEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
++ L++ K +L+AT VA GIDI ++V+ Y+ + ++ GR GRA
Sbjct: 679 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQ 1792
+ +K + +
Sbjct: 738 -AGSKCILVTSKTEVVENEKCNR 759
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 5e-06
Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 8/144 (5%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+ Q + + ++ + A TGSGKT +L Q++P + +
Sbjct: 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-------GRKAKVV 300
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 301 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 360
Query: 129 LENRYLV-LNQCTYIVLDEADRMI 151
E+ L L+ T ++ DE
Sbjct: 361 FEDGTLTSLSIFTLMIFDECHNTT 384
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-08
Identities = 65/352 (18%), Positives = 122/352 (34%), Gaps = 56/352 (15%)
Query: 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP 785
+ + E L E +E K EP IQ+ L+ A TG GKT +F L
Sbjct: 33 SLCLFPEDFLLKEFVEFFRKCVG-EPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLA 90
Query: 786 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV----G 841
+ +++ A +G ++ PT L Q E K+ G+ T ++ G
Sbjct: 91 MSLFL-----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG 139
Query: 842 GLS-REEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 899
+ RE++ F L +IVI T L Y L +I +D+ D ++ +
Sbjct: 140 RIPKREKENFMQNLRNFKIVITTTQFLS----KHYRELGHFDFIFVDDVDAILKAS--KN 193
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
V K+L + + + K + ++ TAT + L
Sbjct: 194 VDKLLHLLGFHY--------DLKTKSW----VGEARGCLMVSTATAKKGKKAELFRQL-- 239
Query: 960 PATVYIG-SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1018
+ +G + + + + L +L + + II+ + A+ + +
Sbjct: 240 -----LNFDIGSSRITVRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYE 293
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDI 1066
L+ + + ++ G D L+ T RG+D+
Sbjct: 294 SLKN-KFRIGIVT-----ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-08
Identities = 65/352 (18%), Positives = 122/352 (34%), Gaps = 56/352 (15%)
Query: 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP 1460
+ + E L E +E K EP IQ+ L+ A TG GKT +F L
Sbjct: 33 SLCLFPEDFLLKEFVEFFRKCVG-EPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLA 90
Query: 1461 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV----G 1516
+ +++ A +G ++ PT L Q E K+ G+ T ++ G
Sbjct: 91 MSLFL-----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG 139
Query: 1517 GLS-REEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 1574
+ RE++ F L +IVI T L Y L +I +D+ D ++ +
Sbjct: 140 RIPKREKENFMQNLRNFKIVITTTQFLS----KHYRELGHFDFIFVDDVDAILKAS--KN 193
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634
V K+L + + + K + ++ TAT + L
Sbjct: 194 VDKLLHLLGFHY--------DLKTKSW----VGEARGCLMVSTATAKKGKKAELFRQL-- 239
Query: 1635 PATVYIG-SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1693
+ +G + + + + L +L + + II+ + A+ + +
Sbjct: 240 -----LNFDIGSSRITVRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYE 293
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDI 1741
L+ + + ++ G D L+ T RG+D+
Sbjct: 294 SLKN-KFRIGIVT-----ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 5e-08
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+P Q + ++ ++ I A TG GKT LL + Q +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVV 65
Query: 69 IMAPTREL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 127
A + Q + F G R + G + ++ +I+I TP L++
Sbjct: 66 FFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 128 VLENRYLV-LNQCTYIVLDEADRMI 151
L+ + L+ T ++ DE
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTS 149
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 5e-08
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+P Q + ++ ++ I A TG GKT LL + Q +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVV 65
Query: 810 IMAPTREL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 868
A + Q + F G R + G + ++ +I+I TP L++
Sbjct: 66 FFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 869 VLENRYLV-LNQCTYIVLDEADRMI 892
L+ + L+ T ++ DE
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTS 149
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 5e-08
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+P Q + ++ ++ I A TG GKT LL + Q +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVV 65
Query: 1485 IMAPTREL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
A + Q + F G R + G + ++ +I+I TP L++
Sbjct: 66 FFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 1544 VLENRYLV-LNQCTYIVLDEADRMI 1567
L+ + L+ T ++ DE
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTS 149
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 5e-07
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 985 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1032
+D L E + + I+FV + D L +E G +
Sbjct: 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 442
Query: 1033 GKGQEQRELALNSLKG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G ++ L++ K G +IL+AT VA GIDI ++VI Y+ ++ GR
Sbjct: 443 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 502
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
+ + +
Sbjct: 503 RA--RGSKCFLLTSNAGVIEKEQINMY 527
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 5e-07
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1707
+D L E + + I+FV + D L +E G +
Sbjct: 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 442
Query: 1708 GKGQEQRELALNSLKG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G ++ L++ K G +IL+AT VA GIDI ++VI Y+ ++ GR
Sbjct: 443 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 502
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
+ + +
Sbjct: 503 RA--RGSKCFLLTSNAGVIEKEQINMY 527
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 24/230 (10%)
Query: 374 RKRRSRSRERDYDRVRERDTDRSRDDRGR-DRDRDRLERDRSREREREKRHHRRDRSKER 432
+ R Y R + R + + + +R ER K+ H +K
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 433 DGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEEL 492
+ + + +E + + E + ++ S E
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNN--------------------LEITYSTETEKLRSDVER 971
Query: 493 LAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESK 552
L + +EEEA++ + + LRK + + +K +EE K + T++ E K
Sbjct: 972 L--RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 553 RENFDARLRRDREKKKEDPEEKELNKDKEREGEA-IKERYLGLVKKKRRV 601
+N + ++ ++ + KE+ + E++ K+ L L ++ R
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 39/281 (13%)
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSR---DKEGYEPTEQM 469
R+R + R G R Y+ RE ++ + R + Y T +
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 470 VISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEM 529
++ + + AK+E L K K E ER + + ++ ++
Sbjct: 890 IVYLQCCYRRMMAKRE-------LKKLKIEAR---------SVERYKKLHIGLENKIMQL 933
Query: 530 RKKMEEERKKRQEFTKE-ASFESKRENFDARLRRDREK-KKEDPEEKELNKDKEREGEAI 587
++K++E+ K+ + ++ + E +LR D E+ + + E K E I
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 588 KERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIK 647
+ L + + + + + D + + S KE++ +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWA-----DKYKHETEQLVSELKEQNT-------------LL 1035
Query: 648 AQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQK 688
++++ K TE +++ K+++ ++
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+ Q + + ++ + A TGSGKT +L + A + +
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICE-------HHFQNMPAGRKAKVV 59
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 129 LENRYLV-LNQCTYIVLDEADRMID 152
E+ L L+ T ++ DE
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTG 144
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+ Q + + ++ + A TGSGKT +L + A + +
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICE-------HHFQNMPAGRKAKVV 59
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 870 LENRYLV-LNQCTYIVLDEADRMID 893
E+ L L+ T ++ DE
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTG 144
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 1e-07
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+ Q + + ++ + A TGSGKT +L + A + +
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICE-------HHFQNMPAGRKAKVV 59
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 1545 LENRYLV-LNQCTYIVLDEADRMID 1568
E+ L L+ T ++ DE
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTG 144
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 9e-07
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL-- 1023
K E I +E K ++L+ +L+ + ++F + L K +E+
Sbjct: 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 415
Query: 1024 ----------GYNACTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMV 1072
G G ++ L++ K +L+AT VA GIDI ++V
Sbjct: 416 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475
Query: 1073 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
+ Y+ + ++ GR GRA + +K + +
Sbjct: 476 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNR 518
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 9e-07
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL-- 1698
K E I +E K ++L+ +L+ + ++F + L K +E+
Sbjct: 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 415
Query: 1699 ----------GYNACTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMV 1747
G G ++ L++ K +L+AT VA GIDI ++V
Sbjct: 416 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475
Query: 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
+ Y+ + ++ GR GRA + +K + +
Sbjct: 476 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNR 518
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 59/350 (16%), Positives = 101/350 (28%), Gaps = 91/350 (26%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ + G+GKT FL +L E A + +++APTR + +++E
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQIL-----------AECARRRLRTLVLAPTRVVLSEMKE 55
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
G + T S E I L + + I
Sbjct: 56 AF--HGLDVKFHTQAFSAHGSGREV---------IDAMCHATLTYRMLEPTR-VVNWEVI 103
Query: 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 943
++DEA + D I A + ++ T++ TA
Sbjct: 104 IMDEAHFL-------DPASIAAR------------------GWAAHRARANESATILMTA 138
Query: 944 TMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1001
T P S + I V P+E + +
Sbjct: 139 TPP------GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRP------------- 179
Query: 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061
F+ + A+V+A L K G + L+ + + K D ++ATD+A
Sbjct: 180 -TAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI----KQKKPDFILATDIAE 234
Query: 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIG----------------RTGRAG 1095
G ++ V V++ A R GR G
Sbjct: 235 MGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 283
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 59/350 (16%), Positives = 101/350 (28%), Gaps = 91/350 (26%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ + G+GKT FL +L E A + +++APTR + +++E
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQIL-----------AECARRRLRTLVLAPTRVVLSEMKE 55
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
G + T S E I L + + I
Sbjct: 56 AF--HGLDVKFHTQAFSAHGSGREV---------IDAMCHATLTYRMLEPTR-VVNWEVI 103
Query: 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 1618
++DEA + D I A + ++ T++ TA
Sbjct: 104 IMDEAHFL-------DPASIAAR------------------GWAAHRARANESATILMTA 138
Query: 1619 TMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1676
T P S + I V P+E + +
Sbjct: 139 TPP------GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRP------------- 179
Query: 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736
F+ + A+V+A L K G + L+ + + K D ++ATD+A
Sbjct: 180 -TAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI----KQKKPDFILATDIAE 234
Query: 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIG----------------RTGRAG 1770
G ++ V V++ A R GR G
Sbjct: 235 MGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 283
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 64/377 (16%), Positives = 102/377 (27%), Gaps = 98/377 (25%)
Query: 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806
G A P I + R I G+GKT L ++ E +
Sbjct: 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV-----------REALLRRL 49
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866
+I+APTR +A ++EE G P+ +T V + E + +
Sbjct: 50 RTLILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------VDLMCHA-- 96
Query: 867 IDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 923
R L + IV+DEA +
Sbjct: 97 --TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------DPCSVAAR 130
Query: 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 983
++ + M TAT P + + +S IE I +
Sbjct: 131 GYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPIEDIEREIP 173
Query: 984 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043
E+ + + + FV K + +A L K G L +
Sbjct: 174 ERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT- 230
Query: 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVI----------NYDMAKSIEDYT-------- 1085
K D +V TD++ G + VI D + +
Sbjct: 231 ---KLTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286
Query: 1086 --HRIGRTGRAGKEGLA 1100
R GR GR
Sbjct: 287 AAQRRGRIGR-NPAQED 302
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 64/377 (16%), Positives = 102/377 (27%), Gaps = 98/377 (25%)
Query: 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481
G A P I + R I G+GKT L ++ E +
Sbjct: 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV-----------REALLRRL 49
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 1541
+I+APTR +A ++EE G P+ +T V + E + +
Sbjct: 50 RTLILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------VDLMCHA-- 96
Query: 1542 IDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 1598
R L + IV+DEA +
Sbjct: 97 --TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------DPCSVAAR 130
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 1658
++ + M TAT P + + +S IE I +
Sbjct: 131 GYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPIEDIEREIP 173
Query: 1659 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718
E+ + + + FV K + +A L K G L +
Sbjct: 174 ERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT- 230
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVI----------NYDMAKSIEDYT-------- 1760
K D +V TD++ G + VI D + +
Sbjct: 231 ---KLTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286
Query: 1761 --HRIGRTGRAGKEGLA 1775
R GR GR
Sbjct: 287 AAQRRGRIGR-NPAQED 302
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-07
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 987 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRE--LAL 1043
+ + LM L + V++ + A L + L E+ G A H G +R+ A
Sbjct: 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAW 549
Query: 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095
+ + +L+ +++ G + + S ++ +D+ + + RIGR R G
Sbjct: 550 FAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-07
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRE--LAL 1718
+ + LM L + V++ + A L + L E+ G A H G +R+ A
Sbjct: 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAW 549
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770
+ + +L+ +++ G + + S ++ +D+ + + RIGR R G
Sbjct: 550 FAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-07
Identities = 30/189 (15%), Positives = 70/189 (37%), Gaps = 6/189 (3%)
Query: 405 DRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYE 464
D +E R R+ +R + + ++ + +R E+EA G + + + +
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILD--Q 696
Query: 465 PTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRK-RQ 523
+ + E + + E + A+ +AE + + + A+AL +
Sbjct: 697 SEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETE 756
Query: 524 AEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKERE 583
AE+E ++K E E + + E + A + + K+ + +D
Sbjct: 757 AELERVKKVREMELIYARA---QLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA 813
Query: 584 GEAIKERYL 592
G ++ + L
Sbjct: 814 GPEMQVKLL 822
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-05
Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 29/208 (13%)
Query: 368 RSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRD 427
+S P +R + +R E T+ + RLE++ ER+K + +
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQE--AAAKHEAQRLEQEARGRLERQKILDQSE 698
Query: 428 RSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPL 487
K R E + + + A+ +
Sbjct: 699 AEKARKELLELEAMSMAVESTGN-----------------------AKAEAESRAEAARI 735
Query: 488 SLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEA 547
E + + K + +A + E + R+ E+ R ++E E K Q+
Sbjct: 736 EGEGSVLQAKLKAQALAI----ETEAELERVKKVREMELIYARAQLELEVSKAQQLANVE 791
Query: 548 SFESKRENFDARLRRDREKKKEDPEEKE 575
+ + K R+ PE +
Sbjct: 792 AKKFKEMTEALGPGTIRDLAVAGPEMQV 819
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-05
Identities = 28/216 (12%), Positives = 68/216 (31%), Gaps = 10/216 (4%)
Query: 399 DRGRDRDRDRLERDRSREREREKRHHRRDRSKER------DGKDRREGYRRERREEEASG 452
+ D D ++R++ ++ S + D + R R + E +
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666
Query: 453 SKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKE 512
+ ++ K + EQ E K + E + L + +A A E
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQK-ILDQSEAEKARKELLELEAMSMAVESTGNAKAE 725
Query: 513 ERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPE 572
+ + + E ++ K++ + EA E ++ + L R + + +
Sbjct: 726 AESRAEAARIEGEGSVLQAKLKAQ---ALAIETEAELERVKKVREMELIYARAQLELEVS 782
Query: 573 EKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRK 608
+ + + E + LG + + +
Sbjct: 783 KAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 5e-07
Identities = 65/377 (17%), Positives = 108/377 (28%), Gaps = 97/377 (25%)
Query: 741 EIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798
+ + I AE + + + R I G+GKT L ++ ++L + R
Sbjct: 160 DYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV--REALKRRLR 217
Query: 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 858
+I+APTR +A ++EE G P+ +T V + E +
Sbjct: 218 T---------LILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------V 257
Query: 859 VIATPGRLIDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915
+ R L + IV+DEA
Sbjct: 258 DLMCHA----TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------ 289
Query: 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 975
+ ++ + M TAT P + + +S I
Sbjct: 290 DPCSVAARGYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPI 332
Query: 976 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035
E I + E+ + + + FV K + +A L K G L
Sbjct: 333 EDIEREIPERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF 390
Query: 1036 QEQRELALNSLKGGSKDILVATDVAGRG--IDIKDV-------SMVINYDMAKSIEDYT- 1085
+ K D +V TD++ G V VI D + +
Sbjct: 391 DTEYPKT----KLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGP 446
Query: 1086 ---------HRIGRTGR 1093
R GR GR
Sbjct: 447 IPVTPASAAQRRGRIGR 463
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 5e-07
Identities = 65/377 (17%), Positives = 108/377 (28%), Gaps = 97/377 (25%)
Query: 1416 EIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 1473
+ + I AE + + + R I G+GKT L ++ ++L + R
Sbjct: 160 DYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV--REALKRRLR 217
Query: 1474 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 1533
+I+APTR +A ++EE G P+ +T V + E +
Sbjct: 218 T---------LILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------V 257
Query: 1534 VIATPGRLIDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 1590
+ R L + IV+DEA
Sbjct: 258 DLMCHA----TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------ 289
Query: 1591 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 1650
+ ++ + M TAT P + + +S I
Sbjct: 290 DPCSVAARGYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPI 332
Query: 1651 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710
E I + E+ + + + FV K + +A L K G L
Sbjct: 333 EDIEREIPERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF 390
Query: 1711 QEQRELALNSLKGGSKDILVATDVAGRG--IDIKDV-------SMVINYDMAKSIEDYT- 1760
+ K D +V TD++ G V VI D + +
Sbjct: 391 DTEYPKT----KLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGP 446
Query: 1761 ---------HRIGRTGR 1768
R GR GR
Sbjct: 447 IPVTPASAAQRRGRIGR 463
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 9e-07
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 504 SKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRD 563
++ LT+E E++RK + E + ++++ K ++ +E + + E ++ R
Sbjct: 75 AQADRLTQE---PESIRKWREEQRKRLQELDAASKVMEQEWREKA-KKDLEEWNQRQSEQ 130
Query: 564 REKKKED--PEEKELNKDKEREGEAI 587
EK K + +K ++ + + I
Sbjct: 131 VEKNKINNRIADKAFY--QQPDADII 154
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 58/380 (15%), Positives = 102/380 (26%), Gaps = 103/380 (27%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ + G+GKT L L+ +++ K R +I+APTR +A ++ E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLV--REAVKKRLRT---------VILAPTRVVASEMYE 49
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQC 880
L + + + + + L +
Sbjct: 50 A-------LRGEPIRYMTPAVQS----ERTGNEIVDFMCHS----TFTMKLLQGVRVPNY 94
Query: 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940
++DEA + + + S M
Sbjct: 95 NLYIMDEAHFL------------------------DPASVAARGYIETRVSMGDAGAIFM 130
Query: 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK 1000
TAT P E S P + P + ++E D R
Sbjct: 131 -TATPPGTTEAFPPSN--SPIIDEETRI--PDKAWNSGYEWITEFDGR------------ 173
Query: 1001 KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1060
+ FV+ K + L+K G L+ + + K D ++ TD++
Sbjct: 174 --TVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKC----KSEKWDFVITTDIS 227
Query: 1061 GRGIDIKDVSMVINYDMAKSIEDY-------------------THRIGRTGRAGKEGLAV 1101
G + VI D K+I+ R GR GR E L
Sbjct: 228 EMGANF-KADRVI--DPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR-NPEKLGD 283
Query: 1102 SFC----TKDDSHLFYDLKQ 1117
+ D+ +
Sbjct: 284 IYAYSGNVSSDNEGHVSWTE 303
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 58/380 (15%), Positives = 102/380 (26%), Gaps = 103/380 (27%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ + G+GKT L L+ +++ K R +I+APTR +A ++ E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLV--REAVKKRLRT---------VILAPTRVVASEMYE 49
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQC 1555
L + + + + + L +
Sbjct: 50 A-------LRGEPIRYMTPAVQS----ERTGNEIVDFMCHS----TFTMKLLQGVRVPNY 94
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 1615
++DEA + + + S M
Sbjct: 95 NLYIMDEAHFL------------------------DPASVAARGYIETRVSMGDAGAIFM 130
Query: 1616 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK 1675
TAT P E S P + P + ++E D R
Sbjct: 131 -TATPPGTTEAFPPSN--SPIIDEETRI--PDKAWNSGYEWITEFDGR------------ 173
Query: 1676 KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735
+ FV+ K + L+K G L+ + + K D ++ TD++
Sbjct: 174 --TVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKC----KSEKWDFVITTDIS 227
Query: 1736 GRGIDIKDVSMVINYDMAKSIEDY-------------------THRIGRTGRAGKEGLAV 1776
G + VI D K+I+ R GR GR E L
Sbjct: 228 EMGANF-KADRVI--DPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR-NPEKLGD 283
Query: 1777 SFC----TKDDSHLFYDLKQ 1792
+ D+ +
Sbjct: 284 IYAYSGNVSSDNEGHVSWTE 303
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 439 EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA 498
E YRR + EE G K D + + E E L KK+
Sbjct: 296 ELYRRCKLEE--MGFKDTDPDSKPFSLQETYEAKRNEF-------------LGELQKKEE 340
Query: 499 EEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDA 558
E + KE EA ++ + + ++K ++E+KK ++ K+ S + + F
Sbjct: 341 EMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLED--KKKSLDDEVNAFKQ 398
Query: 559 RLRRDREKKKEDPEE---KELNKDKERE 583
R + + + + L +DKE++
Sbjct: 399 RKTAAELLQSQGSQAGGSQTLKRDKEKK 426
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/366 (15%), Positives = 98/366 (26%), Gaps = 100/366 (27%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM-APTRELAQQIE 822
+ + + GSGKT L ++ +DA Q + APTR +A ++
Sbjct: 20 KRQMTVLDLHPGSGKTRKILPQII------------KDAIQQRLRTAVLAPTRVVAAEMA 67
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQ 879
E G P+ +T V E + + L +R + +
Sbjct: 68 EALR--GLPVRYQTSAVQREHQGNEI---------VDVMCHA----TLTHRLMSPNRVPN 112
Query: 880 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 939
V+DEA D I + + +
Sbjct: 113 YNLFVMDEAHFT-------DPASIA----ARGYIATKVELGEAAAIFM------------ 149
Query: 940 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV 999
TAT P + P + + I + + +
Sbjct: 150 --TATPP------GTTD---PFPDSNAPIHDLQDEIPDRAWSSGYEWITEY--------- 189
Query: 1000 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV 1059
+ FV K + +A L++ G L+ + K G D ++ TD+
Sbjct: 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKC----KNGDWDFVITTDI 245
Query: 1060 AGRGIDIKDVSMVI----------NYDMAKSIEDYTH----------RIGRTGRAGKEGL 1099
+ G + S VI + + R GR GR +
Sbjct: 246 SEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR-NPNQV 303
Query: 1100 AVSFCT 1105
+
Sbjct: 304 GDEYHY 309
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/366 (15%), Positives = 98/366 (26%), Gaps = 100/366 (27%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM-APTRELAQQIE 1497
+ + + GSGKT L ++ +DA Q + APTR +A ++
Sbjct: 20 KRQMTVLDLHPGSGKTRKILPQII------------KDAIQQRLRTAVLAPTRVVAAEMA 67
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQ 1554
E G P+ +T V E + + L +R + +
Sbjct: 68 EALR--GLPVRYQTSAVQREHQGNEI---------VDVMCHA----TLTHRLMSPNRVPN 112
Query: 1555 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 1614
V+DEA D I + + +
Sbjct: 113 YNLFVMDEAHFT-------DPASIA----ARGYIATKVELGEAAAIFM------------ 149
Query: 1615 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV 1674
TAT P + P + + I + + +
Sbjct: 150 --TATPP------GTTD---PFPDSNAPIHDLQDEIPDRAWSSGYEWITEY--------- 189
Query: 1675 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV 1734
+ FV K + +A L++ G L+ + K G D ++ TD+
Sbjct: 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKC----KNGDWDFVITTDI 245
Query: 1735 AGRGIDIKDVSMVI----------NYDMAKSIEDYTH----------RIGRTGRAGKEGL 1774
+ G + S VI + + R GR GR +
Sbjct: 246 SEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR-NPNQV 303
Query: 1775 AVSFCT 1780
+
Sbjct: 304 GDEYHY 309
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 5e-04
Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 48/328 (14%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQG 64
P Q AI + ++ A T +GKT+ A L
Sbjct: 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NK 129
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
I +P + L+ Q E +G+ T G ++ ++ T
Sbjct: 130 QRVIYTSPIKALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEI 178
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
L +L V+ + +++ DE M D ++ + +P
Sbjct: 179 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME 238
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
A + K + + P + Y+ + + + + K +R+
Sbjct: 239 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH----------GDGIYLVVDEKSTFRE- 287
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 304
A+ ++ P + T + + K+++++ +
Sbjct: 288 ----ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKK 341
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYN 332
PVI+F K+ + LA + KL +N
Sbjct: 342 KYNPVIVFSFSKRDCEELALKMSKLDFN 369
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 48/328 (14%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQG 64
P Q AI + ++ A T +GKT+ A L
Sbjct: 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NK 227
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
I +P + L+ Q E +G+ T G ++ ++ T
Sbjct: 228 QRVIYTSPIKALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEI 276
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
L +L V+ + +++ DE M D ++ + +P
Sbjct: 277 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME 336
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
A + K + + P + Y+ + + + + K +R+
Sbjct: 337 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH----------GDGIYLVVDEKSTFRE- 385
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 304
A+ ++ P + T + + K+++++ +
Sbjct: 386 ----ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKK 439
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYN 332
PVI+F K+ + LA + KL +N
Sbjct: 440 KYNPVIVFSFSKRDCEELALKMSKLDFN 467
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1832 | |||
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.98 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.98 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.98 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.97 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.97 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.97 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.97 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.97 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.97 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.97 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.97 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.97 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.97 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.97 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.96 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.96 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.95 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.95 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.95 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.95 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.94 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.93 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.93 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.93 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.93 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.92 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.92 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.92 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.92 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.92 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.91 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.91 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.91 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.91 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.91 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.9 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.9 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.9 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.9 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.9 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.89 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.89 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.89 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.88 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.88 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.87 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.86 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.85 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.76 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.75 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.82 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.82 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.81 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.79 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.79 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.77 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.76 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.74 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.66 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.65 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.63 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.61 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.56 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.56 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.88 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.46 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.48 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.4 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.35 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.27 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.16 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.13 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.09 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 97.08 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.99 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.98 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.96 | |
| 3pgw_S | 437 | U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM | 96.95 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.94 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.92 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.54 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 96.1 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.24 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.08 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.28 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.23 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 93.95 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 93.88 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 93.5 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.44 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 93.43 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 93.42 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 93.38 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 93.12 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 92.97 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 92.77 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 92.76 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 92.45 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 92.24 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 91.95 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 91.74 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 91.39 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 91.18 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 91.11 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 90.68 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 90.39 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 90.36 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 90.26 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 90.18 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 89.95 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 89.92 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 89.81 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 89.56 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 89.54 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 89.02 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 88.61 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 88.37 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 88.14 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 88.13 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 88.02 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 87.98 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 87.75 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 87.7 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 87.6 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 87.52 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 87.51 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 87.17 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 87.14 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 86.87 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 86.78 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 86.4 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 86.09 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 85.84 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 85.74 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 85.49 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 85.04 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 84.92 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 84.8 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 84.8 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 84.74 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 84.69 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 84.64 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 84.5 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 84.37 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 84.11 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 83.88 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 83.87 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 83.63 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 83.54 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 83.37 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 83.21 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 83.07 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 82.9 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 82.77 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 82.55 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 82.12 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 81.88 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 81.78 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 81.67 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 81.54 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 81.2 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 81.05 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 80.73 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 80.68 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 80.56 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 80.05 |
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-95 Score=1024.61 Aligned_cols=1016 Identities=18% Similarity=0.202 Sum_probs=717.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
||++...++ .||+.++++|++++|.++. ++|+++|||||||||++|.+||+..|.+..... ......+.++||++|
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~-~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD-GTINVDDFKIIYIAP 142 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT-SSCCTTSCEEEEECS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc-ccccCCCCEEEEECC
Confidence 666655554 3899999999999999985 789999999999999999999999886543221 112346789999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---ccCCceeEEEecchh
Q psy6409 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDEADR 890 (1832)
Q Consensus 814 treLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~---~l~~~~~lViDEaH~ 890 (1832)
+++||.|+++.|.+.+..+|++|..++||.+...+. ..+++|+|||||+| +.+.++.. .++.+++|||||+|.
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchh
Confidence 999999999999999899999999999998765432 34799999999998 66655432 478999999999996
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC--cEEEEccc
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP--ATVYIGSV 968 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p--~~v~~~~~ 968 (1832)
+.| .+++.++.++.++ +..........|+|++|||+|+ .+.++...-.++ ..+.++..
T Consensus 219 l~d-~RG~~lE~~l~rl------------------~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~ 278 (1724)
T 4f92_B 219 LHD-DRGPVLEALVARA------------------IRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS 278 (1724)
T ss_dssp GGS-TTHHHHHHHHHHH------------------HHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG
T ss_pred cCC-ccHHHHHHHHHHH------------------HHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC
Confidence 654 7999999888765 2233334466899999999997 555665443332 12333333
Q ss_pred CCCCcceEEEEEEcchhh---HHH----HHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHc-----------------
Q psy6409 969 GKPTERIEQIVYILSEQD---KRK----KLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL----------------- 1023 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~---k~~----~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~----------------- 1023 (1832)
..+. .+.+.+..+.... ... .+...+.. ...+++||||++++.|+.+|..|.+.
T Consensus 279 ~RPv-pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~ 357 (1724)
T 4f92_B 279 FRPV-PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAS 357 (1724)
T ss_dssp GCSS-CEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTC
T ss_pred CccC-ccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhH
Confidence 3333 3555444433221 111 12222222 35678999999999999999888532
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cCC--
Q psy6409 1024 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDM-- 1077 (1832)
Q Consensus 1024 --------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d~-- 1077 (1832)
..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++++||. |+.
T Consensus 358 ~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~ 437 (1724)
T 4f92_B 358 TEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEK 437 (1724)
T ss_dssp SSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTT
T ss_pred HHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcC
Confidence 346899999999999999999999999999999999999999999999995 543
Q ss_pred ----CCCHhHHHHHhcccccCCC--CcEEEEEecCCCc---------------hHHHHHHHHHhcCCccccccccccccc
Q psy6409 1078 ----AKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDS---------------HLFYDLKQMMISSPVTGRAGKEGLAVS 1136 (1832)
Q Consensus 1078 ----p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~---------------~~~~~l~~~l~~~~~~~~~~~~~~~v~ 1136 (1832)
|.++.+|+||+|||||+|. .|.+++++++++. .+...+.+++++++++|++.+..+++.
T Consensus 438 ~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~ 517 (1724)
T 4f92_B 438 GRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVN 517 (1724)
T ss_dssp TEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHH
T ss_pred CCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHH
Confidence 5689999999999999985 4999999998753 444556789999999999999999999
Q ss_pred ccccCCchhHHHHHHhhhcCCCC--CCchhhcCCCcc-cCCC-CcccccCCccccCCChhhhccccccccccccccCccc
Q psy6409 1137 FCTKDDSHLFYDLKQMMISSPVS--TCPPELLNHPDA-QHKP-GTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKK 1212 (1832)
Q Consensus 1137 ~~~~~~~~~~~~l~~~l~~~~~~--~~~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1212 (1832)
|+..+...+.......+..-... ..++.+...... +... ......+ ..+.....+....+.+|+..
T Consensus 518 ~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~----------li~~d~~~~~~~~T~lGr~~ 587 (1724)
T 4f92_B 518 WLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN----------LVKYDKKTGNFQVTELGRIA 587 (1724)
T ss_dssp HHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTT----------SEEECTTTCBEEECHHHHHH
T ss_pred HHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCC----------CeeeecCCCccccchHHHHH
Confidence 99765432221111111100000 000000000000 0000 0000000 01111222344567789999
Q ss_pred ccccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHH----------------------hcc
Q psy6409 1213 SPQCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKER----------------------YLG 1268 (1832)
Q Consensus 1213 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~----------------------~~~ 1268 (1832)
+++|..+.+ ..+.-.....++..++|.+++.+.+|..+.+|.+| .+|+.|.+. |++
T Consensus 588 s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~i~ 667 (1724)
T 4f92_B 588 SHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFIS 667 (1724)
T ss_dssp HHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHHHSSSCCCSCCSSHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHhcCCCCcCCCCCChHHHHHHHHHHHHc
Confidence 999998888 33334456677888999999999999999999887 788776544 332
Q ss_pred hhh----------------hhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccchhhhcc---chh
Q psy6409 1269 LVK----------------KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKR---DQS 1329 (1832)
Q Consensus 1269 ~~~----------------~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---~~~ 1329 (1832)
... ..|.++++++.....+|...+..++.++++++.+.|........+++++...-.+ ...
T Consensus 668 ~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~ 747 (1724)
T 4f92_B 668 QLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF 747 (1724)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSC
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHhcCC
Confidence 111 2455566666666778999999999999999999998866667777776442211 001
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHhhhHHh----------------------hhcccCCCCCh----------------
Q psy6409 1330 KFYGEMLEKRRTEAEKEQEKVRLKKVKKREE----------------------KQKWDDRHWTE---------------- 1371 (1832)
Q Consensus 1330 ~f~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----------------------~~~~~~~~~~~---------------- 1371 (1832)
.+.........+..+.-.......+..+... .....+..|.+
T Consensus 748 ~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~ 827 (1724)
T 4f92_B 748 PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDV 827 (1724)
T ss_dssp CGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEEEEEECSCCCTTTTTTEEEEEEEEECT
T ss_pred CHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEEEEeeccccchhhcCCceeEEEEEEec
Confidence 1110000000000000000000111111100 00011222221
Q ss_pred ------------------------------------hhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccC-------
Q psy6409 1372 ------------------------------------KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEA------- 1408 (1832)
Q Consensus 1372 ------------------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~------- 1408 (1832)
..+-...++.|........+.+.+..+|+....++++
T Consensus 828 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp 907 (1724)
T 4f92_B 828 DSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLP 907 (1724)
T ss_dssp TSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCB
T ss_pred CCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeeccccccCCCCCCCCCccccCCCCC
Confidence 1111222345666556666667777777655555442
Q ss_pred --CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1409 --SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1409 --~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~-g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
.|.+..++.+...+|..|+|+|.++|+.++. +.|++++||||||||++|.+||+..+.+. .+.++||
T Consensus 908 ~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----------~~~kavy 977 (1724)
T 4f92_B 908 VSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----------SEGRCVY 977 (1724)
T ss_dssp GGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEE
T ss_pred cccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEE
Confidence 2445677777788999999999999999986 47899999999999999999999888652 3567999
Q ss_pred EcCcHHHHHHHHHHHHH-hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc--cccCCceeEEEcc
Q psy6409 1486 MAPTRELAQQIEEETNK-FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDE 1562 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~-~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDE 1562 (1832)
|+|+++||.|++..|.+ |+..+|++|+.++|+...+... ..+++|+|||||+|..+++++. ..++++++||+||
T Consensus 978 i~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE 1054 (1724)
T 4f92_B 978 ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDE 1054 (1724)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECC
T ss_pred EcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeec
Confidence 99999999999999975 6677899999999998765442 3468999999999988887643 3578999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc-CCCcEEEEc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATVYIG 1641 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l-~~p~~v~i~ 1641 (1832)
+|+|.+ .+++.++.++..+.. .........|+|++|||+++.. +++.+.. .....+.+.
T Consensus 1055 ~H~l~d-~rg~~le~il~rl~~------------------i~~~~~~~~riI~lSATl~N~~-dla~WL~~~~~~~~~~~ 1114 (1724)
T 4f92_B 1055 VHLIGG-ENGPVLEVICSRMRY------------------ISSQIERPIRIVALSSSLSNAK-DVAHWLGCSATSTFNFH 1114 (1724)
T ss_dssp GGGGGS-TTHHHHHHHHHHHHH------------------HHHTTSSCCEEEEEESCBTTHH-HHHHHHTCCSTTEEECC
T ss_pred hhhcCC-CCCccHHHHHHHHHH------------------HHhhcCCCceEEEEeCCCCCHH-HHHHHhCCCCCCeEEeC
Confidence 997765 578888888876531 1122335689999999999864 4444333 233444555
Q ss_pred ccCCCCcceEEEEEEcchhh--------HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH----------------
Q psy6409 1642 SVGKPTERIEQIVYILSEQD--------KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---------------- 1697 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~--------k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~---------------- 1697 (1832)
...++.. +...+....... .......+......+++||||+|++.|+.++..|..
T Consensus 1115 ~~~RPvp-L~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~ 1193 (1724)
T 4f92_B 1115 PNVRPVP-LELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1193 (1724)
T ss_dssp GGGCSSC-EEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCH
T ss_pred CCCCCCC-eEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccH
Confidence 5555443 333333222111 111222233445778999999999999998877743
Q ss_pred ------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----e-----
Q psy6409 1698 ------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----Y----- 1750 (1832)
Q Consensus 1698 ------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~----- 1750 (1832)
+..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||. |
T Consensus 1194 ~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~ 1273 (1724)
T 4f92_B 1194 KDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIH 1273 (1724)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTT
T ss_pred HHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCccc
Confidence 1357999999999999999999999999999999999999999999999984 3
Q ss_pred -CCCCCHHHHHHHhcccccCCC--ccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCcccccc
Q psy6409 1751 -DMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPK 1823 (1832)
Q Consensus 1751 -d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~~~~ 1823 (1832)
..|.++.+|+||+|||||+|. .|.|++|+++.+..+|..+.....+.+ |++...|.+|.+++|+.|+|.+++
T Consensus 1274 ~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pve-S~L~~~l~~~l~~eI~~~~i~~~~ 1348 (1724)
T 4f92_B 1274 AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE-SHLDHCMHDHFNAEIVTKTIENKQ 1348 (1724)
T ss_dssp EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCC-CCGGGSCHHHHHHHHHTTSCCBHH
T ss_pred ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCcee-eecccchHHHHHHHHHhcccCCHH
Confidence 346789999999999999986 699999999999999999988888886 899999999999999999998654
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-59 Score=661.84 Aligned_cols=482 Identities=17% Similarity=0.163 Sum_probs=337.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
|.....+++...+|..++|+|.++|+.++. +.|++++||||||||++|.+||+..+.+ ..+.++||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~----------~~~~kavyi~P 980 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ----------SSEGRCVYITP 980 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH----------CTTCCEEEECS
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh----------CCCCEEEEEcC
Confidence 445677888888999999999999999986 5789999999999999999999988753 24668999999
Q ss_pred chhHHHHHHHHHHH-hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--ccccCCceeEEEecchh
Q psy6409 814 TRELAQQIEEETNK-FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 814 treLa~Qi~~~~~~-~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--~~~l~~~~~lViDEaH~ 890 (1832)
+++||.|++..+.+ ++..+|++|+.++|+...... ...+++|+|||||+|..++.+. ...++++++||+||+|+
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 99999999999875 667789999999998764433 2346899999999995555432 23578999999999997
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc-EEEEcccC
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA-TVYIGSVG 969 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~-~v~~~~~~ 969 (1832)
|.+ .+++.++.++.++. ..........|+|++|||+|+ ...++......+. .+.+....
T Consensus 1058 l~d-~rg~~le~il~rl~------------------~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~ 1117 (1724)
T 4f92_B 1058 IGG-ENGPVLEVICSRMR------------------YISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV 1117 (1724)
T ss_dssp GGS-TTHHHHHHHHHHHH------------------HHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG
T ss_pred cCC-CCCccHHHHHHHHH------------------HHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC
Confidence 766 68999888887652 111223356899999999997 5567665544433 33333333
Q ss_pred CCCcceEEEEEEcchhhH---H----HHHHHHH-HcCCCCCEEEEEcccchHHHHHHHHHHc------------------
Q psy6409 970 KPTERIEQIVYILSEQDK---R----KKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKL------------------ 1023 (1832)
Q Consensus 970 ~~~~~i~q~~~~~~~~~k---~----~~L~~~l-~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------------ 1023 (1832)
.+ ..++..+........ . ..+...+ .....+++||||++++.|+.++..|...
T Consensus 1118 RP-vpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l 1196 (1724)
T 4f92_B 1118 RP-VPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1196 (1724)
T ss_dssp CS-SCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHH
T ss_pred CC-CCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHH
Confidence 33 334444433322111 1 1122222 3356789999999999999988776321
Q ss_pred ----------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC------C
Q psy6409 1024 ----------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD------M 1077 (1832)
Q Consensus 1024 ----------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d------~ 1077 (1832)
..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||. || .
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~ 1276 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEE
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccC
Confidence 346999999999999999999999999999999999999999999999993 32 3
Q ss_pred CCCHhHHHHHhcccccCCC--CcEEEEEecCCCchHHH---------------HHHHHHhcCCccccccccccccccccc
Q psy6409 1078 AKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFY---------------DLKQMMISSPVTGRAGKEGLAVSFCTK 1140 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~~~~~---------------~l~~~l~~~~~~~~~~~~~~~v~~~~~ 1140 (1832)
|.++.+|+||+|||||+|. .|.|++++.+.+..++. .+.+++++++..+++.+..++++|+..
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 6799999999999999997 59999999887554443 356788899999999999999999876
Q ss_pred CCchhHHHHHHhhhcCCCCCCch-----hhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCcccccc
Q psy6409 1141 DDSHLFYDLKQMMISSPVSTCPP-----ELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQ 1215 (1832)
Q Consensus 1141 ~~~~~~~~l~~~l~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1832)
+..... +..-..-........ .+..+.... .......++... ..........+|+..+.+
T Consensus 1357 Tfl~~r--~~~nP~~y~l~~~~~~~~~~~l~~lv~~~--l~~L~~~~~I~~-----------~~~~~l~~T~lG~i~s~~ 1421 (1724)
T 4f92_B 1357 TFLYRR--MTQNPNYYNLQGISHRHLSDHLSELVEQT--LSDLEQSKCISI-----------EDEMDVAPLNLGMIAAYY 1421 (1724)
T ss_dssp SSHHHH--HHHSGGGTTCSCCSHHHHHHHHHHHHHHH--HHHHHHTTSEEE-----------ETTTEEEECHHHHHHHHT
T ss_pred hHHHHH--HhcCcccccccccchhhHHHHHHHHHHHH--HHHHHHCCCEEE-----------cCCCCEeecHHHHHHHHH
Confidence 543211 111000000000000 000000000 000000000000 000012235578888999
Q ss_pred cccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHH
Q psy6409 1216 CEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKER 1265 (1832)
Q Consensus 1216 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~ 1265 (1832)
|..+.+ ..+...+....+..++|+.++.+.+|+.+.+|-.| ..+..|.+.
T Consensus 1422 yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~ 1473 (1724)
T 4f92_B 1422 YINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK 1473 (1724)
T ss_dssp TCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhh
Confidence 988777 33333445566778899999999999999988766 455556554
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=581.48 Aligned_cols=380 Identities=41% Similarity=0.689 Sum_probs=348.3
Q ss_pred hccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhh
Q psy6409 713 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 792 (1832)
Q Consensus 713 ~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~ 792 (1832)
+..+.+.|.++|.|+.+|++++|++.++++|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred chhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc
Q psy6409 793 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 872 (1832)
Q Consensus 793 ~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~ 872 (1832)
.+.. ....++++|||+|||+||.|+++.+.+++...++++..++||.....+...+..+++|+|+|||+|.+++.+
T Consensus 121 ~~~~----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 196 (434)
T 2db3_A 121 DPHE----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR 196 (434)
T ss_dssp SCCC----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccc----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh
Confidence 3221 123578999999999999999999999999889999999999999888888888999999999999999999
Q ss_pred cccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH
Q psy6409 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952 (1832)
Q Consensus 873 ~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~ 952 (1832)
+.+.+.++++|||||||+|+++||.+.+..|+..+.. ...+|+++||||+|+.+..+
T Consensus 197 ~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~-----------------------~~~~q~l~~SAT~~~~~~~~ 253 (434)
T 2db3_A 197 TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM-----------------------RPEHQTLMFSATFPEEIQRM 253 (434)
T ss_dssp TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS-----------------------CSSCEEEEEESCCCHHHHHH
T ss_pred CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC-----------------------CCCceEEEEeccCCHHHHHH
Confidence 8888999999999999999999999999999987631 23479999999999999999
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcC
Q psy6409 953 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032 (1832)
Q Consensus 953 ~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg 1032 (1832)
+..++.+|..+.++........+.+.+..+....|...|.+++..... ++||||+++..|+.+++.|...|+.+..+||
T Consensus 254 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 254 AGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp HHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred HHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999888877788899999999999999999999987654 4999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchH
Q psy6409 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1111 (1832)
Q Consensus 1033 ~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~ 1111 (1832)
++++.+|..+++.|++|+.+|||||+++++|||+|+|++|||||+|.++.+|+||+|||||+|+.|.|++|++++ +..+
T Consensus 333 ~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~ 412 (434)
T 2db3_A 333 DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412 (434)
T ss_dssp TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999954 6566
Q ss_pred HHHHHHHHh
Q psy6409 1112 FYDLKQMMI 1120 (1832)
Q Consensus 1112 ~~~l~~~l~ 1120 (1832)
+..|.+.+.
T Consensus 413 ~~~l~~~l~ 421 (434)
T 2db3_A 413 AADLVKILE 421 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-57 Score=571.95 Aligned_cols=392 Identities=41% Similarity=0.675 Sum_probs=361.4
Q ss_pred cccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q psy6409 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 1467 (1832)
Q Consensus 1388 ~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~ 1467 (1832)
+..+.+.|...|.|+.+|++++|++.++++|..+||..|+|+|.++||.++.|+|++++||||||||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc
Q psy6409 1468 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 1547 (1832)
Q Consensus 1468 ~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~ 1547 (1832)
.+.. ....++++|||+||++||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+++.+
T Consensus 121 ~~~~----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 196 (434)
T 2db3_A 121 DPHE----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR 196 (434)
T ss_dssp SCCC----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccc----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh
Confidence 4321 123578999999999999999999999998889999999999998888888888999999999999999999
Q ss_pred cccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHH
Q psy6409 1548 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627 (1832)
Q Consensus 1548 ~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~ 1627 (1832)
+.+.+.++++|||||||+|++++|.+.+..|+..+.. ...+|+++||||+|..+..+
T Consensus 197 ~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~-----------------------~~~~q~l~~SAT~~~~~~~~ 253 (434)
T 2db3_A 197 TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM-----------------------RPEHQTLMFSATFPEEIQRM 253 (434)
T ss_dssp TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS-----------------------CSSCEEEEEESCCCHHHHHH
T ss_pred CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC-----------------------CCCceEEEEeccCCHHHHHH
Confidence 8888999999999999999999999999999987631 14579999999999999999
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcC
Q psy6409 1628 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707 (1832)
Q Consensus 1628 ~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg 1707 (1832)
+..++.++..+.++..+.....+.+.+..+....|...|.+++.....+ +||||++++.|+.++..|...++.+..+||
T Consensus 254 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 254 AGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp HHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred HHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999988887777788999999999999999999999876544 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeC-CChhH
Q psy6409 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK-DDSHL 1786 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~-~d~~~ 1786 (1832)
++++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||+|+.|.|++|+++ .+...
T Consensus 333 ~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~ 412 (434)
T 2db3_A 333 DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412 (434)
T ss_dssp TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 57889
Q ss_pred HHHHHHHhhcCCCCCCChhhcC
Q psy6409 1787 FYDLKQMMISSPVSTCPPELLN 1808 (1832)
Q Consensus 1787 ~~~l~~~l~~~~~~~~~~~L~~ 1808 (1832)
..++.+.+.... +.+|++|.+
T Consensus 413 ~~~l~~~l~~~~-~~vp~~l~~ 433 (434)
T 2db3_A 413 AADLVKILEGSG-QTVPDFLRT 433 (434)
T ss_dssp HHHHHHHHHHTT-CCCCGGGC-
T ss_pred HHHHHHHHHHcC-CCCCHHHHh
Confidence 999999998885 899999865
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=537.20 Aligned_cols=385 Identities=42% Similarity=0.685 Sum_probs=342.0
Q ss_pred ceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchh
Q psy6409 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK 795 (1832)
Q Consensus 716 i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~ 795 (1832)
+.+.|.++|.|+.+|++++|++.++++|...||..|||+|.++||.++.|+|+|++||||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999988754221
Q ss_pred h---------hhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH
Q psy6409 796 I---------ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866 (1832)
Q Consensus 796 ~---------~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL 866 (1832)
. ........++++|||+||++||.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0 0001122457899999999999999999999998889999999999998888888888999999999999
Q ss_pred HHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC
Q psy6409 867 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 946 (1832)
Q Consensus 867 ~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~ 946 (1832)
.+++..+.+.+..+++|||||||++++++|.+.+..++..... ......|++++|||+|
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~---------------------~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM---------------------PPKGVRHTMMFSATFP 221 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSC---------------------CCBTTBEEEEEESCCC
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccC---------------------CCcCCcEEEEEEEeCC
Confidence 9999988888999999999999999999999999999875421 1123579999999999
Q ss_pred hHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCC
Q psy6409 947 PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGY 1025 (1832)
Q Consensus 947 ~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~ 1025 (1832)
+.+..++..++.+|..+.+.........+.+.+..+....+...+.+++... ...++||||+++..++.+++.|...++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 301 (417)
T 2i4i_A 222 KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY 301 (417)
T ss_dssp HHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC
Confidence 9999999999999988888777777778888888888889999999998875 567899999999999999999999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1026 ~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|++
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (417)
T 2i4i_A 302 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 381 (417)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC
T ss_pred CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhc
Q psy6409 1106 KDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1106 ~~d~~~~~~l~~~l~~ 1121 (1832)
+.+...+..+.+.+..
T Consensus 382 ~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 382 ERNINITKDLLDLLVE 397 (417)
T ss_dssp GGGGGGHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9998888888877643
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-53 Score=530.88 Aligned_cols=402 Identities=41% Similarity=0.660 Sum_probs=354.3
Q ss_pred cceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCc
Q psy6409 1390 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469 (1832)
Q Consensus 1390 ~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p 1469 (1832)
.+.+.|..+|.++.+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+...+
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999998775422
Q ss_pred hh---------hcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHH
Q psy6409 1470 KI---------ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540 (1832)
Q Consensus 1470 ~~---------~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~r 1540 (1832)
.. ........++++|||+||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 000112235789999999999999999999998888999999999999888877788889999999999
Q ss_pred HHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccC
Q psy6409 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1541 l~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl 1620 (1832)
|.+++..+.+.+.++++|||||||++++++|.+.+..++...... .....|++++|||+
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~~~i~~SAT~ 220 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP---------------------PKGVRHTMMFSATF 220 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC---------------------CBTTBEEEEEESCC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC---------------------CcCCcEEEEEEEeC
Confidence 999999888889999999999999999999999999998754210 11357899999999
Q ss_pred ChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcC
Q psy6409 1621 PPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLG 1699 (1832)
Q Consensus 1621 ~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~ 1699 (1832)
+..+..+...++..+..+.+.........+.+.+..+....+...+.+++... ...++||||+++.+++.++..|...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 221 PKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp CHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 99999999999999988887776667778888888888889999999999876 56789999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEe
Q psy6409 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779 (1832)
Q Consensus 1700 ~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~ 1779 (1832)
+.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCc
Q psy6409 1780 TKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQ 1813 (1832)
Q Consensus 1780 ~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~ 1813 (1832)
++.|...+..+.+.+.... ..+|.+|.+.....
T Consensus 381 ~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 381 NERNINITKDLLDLLVEAK-QEVPSWLENMAYEH 413 (417)
T ss_dssp CGGGGGGHHHHHHHHHHTT-CCCCHHHHHHHTCS
T ss_pred ccccHHHHHHHHHHHHHhc-CcCCHHHHHHHHhh
Confidence 9999999999999998875 78898876554433
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-52 Score=521.67 Aligned_cols=370 Identities=29% Similarity=0.526 Sum_probs=336.1
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...+.+..+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.
T Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~--------- 100 (410)
T 2j0s_A 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD--------- 100 (410)
T ss_dssp CTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCC---------
T ss_pred CCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHh---------
Confidence 34456778999999999999999999999999999999999999999999999999999999999987542
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
....++++|||+||++||.|+.+.+.+++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.+..+
T Consensus 101 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 101 IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred hccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhe
Confidence 12356799999999999999999999999999999999999999888888888899999999999999999888889999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
++|||||||++++++|...+..++..++ ...|++++|||+|+.+..+...++.+|
T Consensus 181 ~~vViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 235 (410)
T 2j0s_A 181 KMLVLDEADEMLNKGFKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDP 235 (410)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHTTSC-------------------------TTCEEEEEESCCCHHHHTTGGGTCSSC
T ss_pred eEEEEccHHHHHhhhhHHHHHHHHHhCc-------------------------cCceEEEEEcCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999887764 247999999999999988888999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 961 ATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039 (1832)
Q Consensus 961 ~~v~~~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 1039 (1832)
..+.+.........+.+.+..+.. ..+...+..++......++||||++++.++.+++.|...|+.+..+||++++.+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 315 (410)
T 2j0s_A 236 IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKER 315 (410)
T ss_dssp EEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred EEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHH
Confidence 888776666666677777766654 4488888888887777899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1040 ~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
..+++.|++|..+|||||+++++|||+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++++...+..+.+++
T Consensus 316 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 316 ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp HHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCc
Q psy6409 1120 ISSPV 1124 (1832)
Q Consensus 1120 ~~~~~ 1124 (1832)
..++.
T Consensus 396 ~~~~~ 400 (410)
T 2j0s_A 396 STQID 400 (410)
T ss_dssp TCCCE
T ss_pred CCCce
Confidence 65543
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-51 Score=511.11 Aligned_cols=376 Identities=29% Similarity=0.531 Sum_probs=337.4
Q ss_pred CCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcc
Q psy6409 1395 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 1474 (1832)
Q Consensus 1395 ~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~ 1474 (1832)
....+++..+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------- 101 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------- 101 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------
Confidence 3344566778999999999999999999999999999999999999999999999999999999999875421
Q ss_pred cccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCC
Q psy6409 1475 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQ 1554 (1832)
Q Consensus 1475 ~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~ 1554 (1832)
...++++|||+||++|+.|+++.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.+
T Consensus 102 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 102 --QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp --TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred --ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 235678999999999999999999999988999999999999988887777788999999999999999988888999
Q ss_pred ceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC
Q psy6409 1555 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634 (1832)
Q Consensus 1555 v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~ 1634 (1832)
+++|||||||++++++|...+..++..++ ...|++++|||++..+..+...++.+
T Consensus 180 ~~~vViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 234 (410)
T 2j0s_A 180 IKMLVLDEADEMLNKGFKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTD 234 (410)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHTTSC-------------------------TTCEEEEEESCCCHHHHTTGGGTCSS
T ss_pred eeEEEEccHHHHHhhhhHHHHHHHHHhCc-------------------------cCceEEEEEcCCCHHHHHHHHHHcCC
Confidence 99999999999999999999988887764 34689999999999988888889999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~ 1713 (1832)
|..+.+.........+.+.+..+.. ..+...+..++......++||||+++..++.++..|...++.+..+||++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 314 (410)
T 2j0s_A 235 PIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKE 314 (410)
T ss_dssp CEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred CEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHH
Confidence 8887766666666677777666554 448888888888777789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1714 R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|..+++.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.|...+..+.++
T Consensus 315 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~ 394 (410)
T 2j0s_A 315 RESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 394 (410)
T ss_dssp HHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCCCCCCChh
Q psy6409 1794 MISSPVSTCPPE 1805 (1832)
Q Consensus 1794 l~~~~~~~~~~~ 1805 (1832)
+... ...+|..
T Consensus 395 ~~~~-~~~~~~~ 405 (410)
T 2j0s_A 395 YSTQ-IDEMPMN 405 (410)
T ss_dssp TTCC-CEECCSC
T ss_pred hCCC-ceecccc
Confidence 7654 3455543
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=507.89 Aligned_cols=370 Identities=30% Similarity=0.539 Sum_probs=320.5
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...+..+.+|+++++++.+++.|.++||..|+|+|.++|+.++.|+|+|++||||||||++|++|++..+..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------- 104 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------- 104 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT--------
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh--------
Confidence 344667789999999999999999999999999999999999999999999999999999999999976532
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccCC
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQ 879 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~ 879 (1832)
...++++||++||++||.|+.+.+.+++...++.+..++||.....+...+. .+++|+|+||++|.+.+.++.+.+..
T Consensus 105 -~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 105 -DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred -cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 2356789999999999999999999999888999999999998877766665 67899999999999999998888999
Q ss_pred ceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 880 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+++|||||||++.+++|...+..++..++ ...|++++|||+|+.+..+...++.+
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 238 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRD 238 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSC-------------------------TTCEEEEECSCCCHHHHHHHTTTCSS
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCC-------------------------CCCeEEEEEEecCHHHHHHHHHHcCC
Confidence 99999999999999999999999987774 24799999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 1038 (1832)
|..+.+.........+.+.+..+. ...+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~ 318 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKE 318 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHH
T ss_pred CEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHH
Confidence 988877666666666777666554 4458888999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1039 R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
|..+++.|++|..+|||||+++++|||+|++++||+|++|.+..+|+||+|||||.|+.|.|++|+++++...+..+.++
T Consensus 319 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 398 (414)
T 3eiq_A 319 RDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 398 (414)
T ss_dssp HHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhcCCc
Q psy6409 1119 MISSPV 1124 (1832)
Q Consensus 1119 l~~~~~ 1124 (1832)
++.+..
T Consensus 399 ~~~~~~ 404 (414)
T 3eiq_A 399 YNTSIE 404 (414)
T ss_dssp TTCCCE
T ss_pred HcCCcc
Confidence 765544
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=496.50 Aligned_cols=363 Identities=32% Similarity=0.552 Sum_probs=325.3
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
.+..+|++++|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.. ...
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---------~~~ 88 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---------KLN 88 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------TSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---------ccC
Confidence 34568999999999999999999999999999999999999999999999999999999999976521 234
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEE
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lV 884 (1832)
++++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 67899999999999999999999999889999999999988777777777899999999999999988888899999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
|||||++.+.+|...+..++..++ ...|++++|||+|..+..+...++..|..+.
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLP-------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 223 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSC-------------------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEES
T ss_pred EeCchHhhhhchHHHHHHHHHhCC-------------------------cCceEEEEEecCCHHHHHHHHHHcCCCeEEE
Confidence 999999998888888888877664 2468999999999999999998988887654
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
+... .....+.+.+..+....+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++
T Consensus 224 ~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 224 LMEE-LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp CCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred eccc-cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Confidence 4322 334557777778888889899999988887889999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
.|++|+.+|||||+++++|||+|++++||+|++|.+..+|+||+|||||.|+.|.|++|++++|...+..+.+.+..+
T Consensus 303 ~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 303 EFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp HHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred HHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888766443
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=489.48 Aligned_cols=371 Identities=31% Similarity=0.554 Sum_probs=328.8
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCC
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 1479 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~ 1479 (1832)
....+|++++|++.++++|..+||..|+|+|.++++.++.|++++++||||||||++|++|++..+.. ...
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---------~~~ 88 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---------KLN 88 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------TSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---------ccC
Confidence 34567999999999999999999999999999999999999999999999999999999999876532 224
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEE
Q psy6409 1480 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559 (1832)
Q Consensus 1480 ~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llV 1559 (1832)
++++||++|+++|+.|+++.+++++...++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 67899999999999999999999998889999999999988777677777899999999999999988888899999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
|||||++.+.+|...+..++..++ ...|++++|||++..+......++..|..+.
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLP-------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 223 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSC-------------------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEES
T ss_pred EeCchHhhhhchHHHHHHHHHhCC-------------------------cCceEEEEEecCCHHHHHHHHHHcCCCeEEE
Confidence 999999998888888888876664 3468999999999999988888888886654
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.. ......+.+.+..+....+...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++
T Consensus 224 ~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 224 LME-ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp CCS-SCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred ecc-ccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Confidence 432 2334567777778888888889999998888889999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1799 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1799 (1832)
.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+.+... .
T Consensus 303 ~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~-~ 381 (400)
T 1s2m_A 303 EFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE-I 381 (400)
T ss_dssp HHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC-C
T ss_pred HHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876433 3
Q ss_pred CCCChhh
Q psy6409 1800 STCPPEL 1806 (1832)
Q Consensus 1800 ~~~~~~L 1806 (1832)
..+|..+
T Consensus 382 ~~~~~~~ 388 (400)
T 1s2m_A 382 AAIPATI 388 (400)
T ss_dssp EECCSSC
T ss_pred ccccccc
Confidence 4555443
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=497.85 Aligned_cols=377 Identities=30% Similarity=0.540 Sum_probs=321.6
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccc
Q psy6409 1397 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476 (1832)
Q Consensus 1397 ~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~ 1476 (1832)
..+....+|+++++++.+++.|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~--------- 104 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL--------- 104 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT---------
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh---------
Confidence 34566788999999999999999999999999999999999999999999999999999999999976532
Q ss_pred cCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccccccCCc
Q psy6409 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQC 1555 (1832)
Q Consensus 1477 ~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v 1555 (1832)
...+.++|||+||++|+.|+++.+.+++...+..+..++|+.....+...+. .+++|+|+||++|.+.+....+.+..+
T Consensus 105 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 2246789999999999999999999999888999999999988877766655 678999999999999999888889999
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
++|||||||++.+++|...+..++..++ ...|++++|||++..+..+...++.+|
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 239 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDP 239 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSC-------------------------TTCEEEEECSCCCHHHHHHHTTTCSSC
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCC-------------------------CCCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 9999999999999999999998887764 347899999999999999999999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R 1714 (1832)
..+.+.........+.+.+..+.. ..+...+..++......++||||+++..++.++..|...++.+..+||++++.+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r 319 (414)
T 3eiq_A 240 IRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKER 319 (414)
T ss_dssp EEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHH
T ss_pred EEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHH
Confidence 887776666666666676665544 4588889999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1715 ~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
..+++.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+++
T Consensus 320 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 320 DVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp HHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCCCCChhhcC
Q psy6409 1795 ISSPVSTCPPELLN 1808 (1832)
Q Consensus 1795 ~~~~~~~~~~~L~~ 1808 (1832)
... ...+|..+.+
T Consensus 400 ~~~-~~~~~~~~~~ 412 (414)
T 3eiq_A 400 NTS-IEEMPLNVAD 412 (414)
T ss_dssp TCC-CEECCC----
T ss_pred cCC-ccccChhhhh
Confidence 665 4666666543
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=491.34 Aligned_cols=363 Identities=29% Similarity=0.490 Sum_probs=319.0
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
+.++.+|++++|++.++++|.+.||..|+|+|.++++.++.+ +|+|++||||||||++|++|++..+..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------- 91 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------- 91 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---------
Confidence 456789999999999999999999999999999999999997 999999999999999999999976522
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCC
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQ 879 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~ 879 (1832)
...++++|||+||++||.|+.+.+.+++..+ ++.+...+|+....... ..+++|+|+||++|.+.+.+ +.+.+.+
T Consensus 92 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 92 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 2356789999999999999999999997764 67888888887654332 34689999999999999865 5667899
Q ss_pred ceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC
Q psy6409 880 CTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958 (1832)
Q Consensus 880 ~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~ 958 (1832)
+++|||||||++++ .+|...+..++..++ ...|++++|||+++.+..++..++.
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~ 223 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVP 223 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------CCceEEEEEeecCHHHHHHHHHhcC
Confidence 99999999999987 678888888877664 2479999999999999999999999
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 959 RPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1037 (1832)
Q Consensus 959 ~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~ 1037 (1832)
+|..+.+.........+.+.+..+. ...+...+..++......++||||+++..|+.++..|...++.+..+||+|++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 303 (412)
T 3fht_A 224 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE 303 (412)
T ss_dssp SCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred CCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHH
Confidence 9988887776666777777766654 466788888888877788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhcccccCCCCcEEEEEecCCC-ch
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SH 1110 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d-~~ 1110 (1832)
+|..+++.|++|+++|||||+++++|||+|++++||+||+| .+..+|+||+|||||.|..|.|++|+++.+ ..
T Consensus 304 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 383 (412)
T 3fht_A 304 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 383 (412)
T ss_dssp HHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHH
Confidence 99999999999999999999999999999999999999999 578999999999999999999999999764 67
Q ss_pred HHHHHHHHHhcCC
Q psy6409 1111 LFYDLKQMMISSP 1123 (1832)
Q Consensus 1111 ~~~~l~~~l~~~~ 1123 (1832)
.+..+.+.++...
T Consensus 384 ~~~~i~~~~~~~~ 396 (412)
T 3fht_A 384 ILNRIQEHFNKKI 396 (412)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcc
Confidence 7888888776543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-49 Score=514.03 Aligned_cols=373 Identities=32% Similarity=0.487 Sum_probs=309.1
Q ss_pred cccCcccCC-CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 726 PVRNWKEAS-LPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 726 p~~~f~~~~-L~~~l~~~l~~~g~~~pt~iQ~~ai~~il--~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
++..|.+.+ |+++++++|.++||..|+|+|.++|+.++ .++|+|++||||||||++|++|++..+..... ..
T Consensus 69 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~ 143 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DS 143 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SS
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cc
Confidence 334443333 99999999999999999999999999999 67899999999999999999999998864321 12
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcC----CCCCeEEEEEcCCchHHHHHHH-hcCCceeecCHHHHHHHHHcc-ccc
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENR-YLV 876 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~----~~~i~v~~~~Gg~~~~~~~~~l-~~~~~IlV~TP~rL~d~l~~~-~~~ 876 (1832)
..++++|||+||++||.|+++.+.++.. ..++.+..++||.....+...+ ..+++|+|+||++|.+++.+. ...
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 3467899999999999999999998643 2246788899999887776666 447999999999999998765 346
Q ss_pred cCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh
Q psy6409 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY 956 (1832)
Q Consensus 877 l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~ 956 (1832)
+..+++|||||||+|++++|.+.+..|+..++.. ........|+++||||+|+.+..++..+
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~------------------~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 285 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEK------------------NSKSADNIKTLLFSATLDDKVQKLANNI 285 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH------------------CSSCTTCCEEEEEESSCCTHHHHHTTTT
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhc------------------cccCccCceEEEEEccCCHHHHHHHHHh
Confidence 8899999999999999999999999998776311 1112245799999999999999999999
Q ss_pred cCCCcEEEEcccC----CCCcceEEEEEEcch-hhH----HHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHc---
Q psy6409 957 LRRPATVYIGSVG----KPTERIEQIVYILSE-QDK----RKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL--- 1023 (1832)
Q Consensus 957 l~~p~~v~~~~~~----~~~~~i~q~~~~~~~-~~k----~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~--- 1023 (1832)
+..|..+.+.... .....+.+.+..... ..+ ...+...+.. ....++||||+++..|+.++..|...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~ 365 (563)
T 3i5x_A 286 MNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK 365 (563)
T ss_dssp CCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC
Confidence 9988777664432 223445555544432 222 2233333332 46679999999999999999999987
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|..|.|++|
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHhc
Q psy6409 1104 CTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~~l~~ 1121 (1832)
++++|..++..|.+....
T Consensus 446 ~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 446 ICKDELPFVRELEDAKNI 463 (563)
T ss_dssp EEGGGHHHHHHHHHHHCC
T ss_pred EchhHHHHHHHHHHHhCC
Confidence 999999998888876543
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-49 Score=513.87 Aligned_cols=363 Identities=33% Similarity=0.497 Sum_probs=306.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il--~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
|+++++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|++..+..... ....++++|||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 78999999999999999999999988754221 123467999999
Q ss_pred cchhHHHHHHHHHHHhcC----CCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHcc-ccccCCceeEEEe
Q psy6409 813 PTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 886 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~----~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lViD 886 (1832)
||++||.|+...+.+++. ...+.+..++||.....+...+. .+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 999999999999998752 23567889999998887776664 47999999999999999775 4578899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|.+.+..|+..++.. ........|+++||||+|+.+..++..++..|..+.+.
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~------------------~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEK------------------NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHH------------------CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhh------------------hcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 999999999999999998776411 11122357999999999999999999999988777665
Q ss_pred ccC----CCCcceEEEEEEcch-hhH----HHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHc---CCcEEEEcCC
Q psy6409 967 SVG----KPTERIEQIVYILSE-QDK----RKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL---GYNACTLHGG 1033 (1832)
Q Consensus 967 ~~~----~~~~~i~q~~~~~~~-~~k----~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~---g~~v~~lhg~ 1033 (1832)
... .....+.+.+..... ..+ ...+...+.. ....++||||+++..|+.++..|... ++.+..+||+
T Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~ 324 (579)
T 3sqw_A 245 TVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324 (579)
T ss_dssp SSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred ecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 432 223445555554433 222 2333333333 45678999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHH
Q psy6409 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113 (1832)
Q Consensus 1034 ~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~ 1113 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++..|+||+|||||+|..|.|++|+++.|..++.
T Consensus 325 ~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~ 404 (579)
T 3sqw_A 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 404 (579)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHh
Q psy6409 1114 DLKQMMI 1120 (1832)
Q Consensus 1114 ~l~~~l~ 1120 (1832)
.+.+...
T Consensus 405 ~l~~~~~ 411 (579)
T 3sqw_A 405 ELEDAKN 411 (579)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 8887643
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=484.67 Aligned_cols=358 Identities=30% Similarity=0.545 Sum_probs=318.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||+|||++|++|++..+.. ...+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 57999999999999999999999999999999999999999999999999999999999876422 234678
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
+||++||++|+.|+.+.+.++.... ++++..++||.....+...+..+ ++|+|+||++|.+++.+....+..+++|||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 9999999999999999999998776 79999999999877776666544 799999999999999888888999999999
Q ss_pred ecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 886 DEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 886 DEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
||||++.++ +|...+..++..++ ...|++++|||+++.+..++..++.+|..+.
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 213 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 213 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEE
T ss_pred eCHHHHhhccchHHHHHHHHhhCC-------------------------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEE
Confidence 999999874 67777777776553 3479999999999999999999999998877
Q ss_pred EcccCC-CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 965 IGSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 965 ~~~~~~-~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
+..... ....+.+.+..+....+...+..++.....+++||||++++.++.+++.|...|+.+..+||++++.+|..++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 214 VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp CCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 655432 3355677777788888999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHH
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMM 1119 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l 1119 (1832)
+.|++|+.+|||||+++++|||+|++++||+|++|.+...|+||+||+||.|+.|.|++|++++ +..++..+.+.+
T Consensus 294 ~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 294 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp HHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999976 445666776654
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=482.74 Aligned_cols=358 Identities=32% Similarity=0.547 Sum_probs=314.5
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
+...+|++++|++.++++|.+.||..|+|+|.++++.++.+ +|+|++||||||||++|++|++..+.. .
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------~ 72 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---------E 72 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------T
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---------C
Confidence 34679999999999999999999999999999999999998 999999999999999999999876522 2
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
..++++||++||++|+.|+.+.+.+++...++.+..++|+...... ..+++|+|+||++|.+.+.+....+.++++
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 3577899999999999999999999998889998888887653322 236899999999999999888888999999
Q ss_pred EEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 883 IVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 883 lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
|||||||++.+ .++...+..+...++ ...|++++|||+++.+..+...++.++.
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 203 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNAN 203 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSCSCE
T ss_pred EEEEChhhhcCccccHHHHHHHHHhCC-------------------------CCcEEEEEEecCCHHHHHHHHHhCCCCe
Confidence 99999999988 678888887777664 3479999999999999999999999888
Q ss_pred EEEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 962 TVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
.+...........+.+.+..+ ....+...+..++.....+++||||+++..|+.+++.|...++.+..+||++++.+|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 283 (395)
T 3pey_A 204 TLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283 (395)
T ss_dssp EECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred EEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 877766666666677766665 4566777788888777788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC------CHhHHHHHhcccccCCCCcEEEEEecCCC-chHHH
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFY 1113 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d-~~~~~ 1113 (1832)
.+++.|++|+++|||||+++++|||+|++++||+||+|. +..+|+||+|||||.|..|.|++|+++.+ ..++.
T Consensus 284 ~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 363 (395)
T 3pey_A 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 363 (395)
T ss_dssp HHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999754 45566
Q ss_pred HHHHHHh
Q psy6409 1114 DLKQMMI 1120 (1832)
Q Consensus 1114 ~l~~~l~ 1120 (1832)
.+.+.+.
T Consensus 364 ~i~~~~~ 370 (395)
T 3pey_A 364 AIQKYFG 370 (395)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 6666543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=516.24 Aligned_cols=370 Identities=29% Similarity=0.493 Sum_probs=179.8
Q ss_pred ceecCCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHH
Q psy6409 716 ITIKGGKVPDP---VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWI 790 (1832)
Q Consensus 716 i~~~~~~~p~p---~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i 790 (1832)
+.+.+.+.|.| +.+|.+++|++.++++|..+||..|+|+|.++||.++.+ +|+|++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34445555544 678999999999999999999999999999999999987 9999999999999999999998654
Q ss_pred hhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHH
Q psy6409 791 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869 (1832)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~ 869 (1832)
. ....++++|||+||++||.|++..+.+++... ++.+...+|+...... ...+++|+|+||++|.++
T Consensus 157 ~---------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 157 E---------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp C---------TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred h---------hcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHH
Confidence 2 12356789999999999999999999987654 5778888887664332 133679999999999999
Q ss_pred HHc-cccccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh
Q psy6409 870 LEN-RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947 (1832)
Q Consensus 870 l~~-~~~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~ 947 (1832)
+.+ +.+.+.++++|||||||+|++ .+|...+..++..++ ...|+++||||++.
T Consensus 225 l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFED 279 (479)
T ss_dssp HTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC-------------------------TTSEEEEEESCCCH
T ss_pred HHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC-------------------------ccceEEEEeCCCCH
Confidence 965 456789999999999999997 678888887776654 34799999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCc
Q psy6409 948 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026 (1832)
Q Consensus 948 ~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~ 1026 (1832)
.+..++..++.+|..+.+.........+.+.+..+.. ..+...+..++......++||||+++..|+.++..|...++.
T Consensus 280 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~ 359 (479)
T 3fmp_B 280 SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQ 359 (479)
T ss_dssp HHHHHHHHHSSSEEEEEEC-------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCcc
Confidence 9999999999999888887766666667776665543 567777777777777789999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhcccccCCCCcEE
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLA 1100 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR~g~~G~a 1100 (1832)
+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+| .+..+|+||+|||||+|+.|.|
T Consensus 360 v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999 5678999999999999999999
Q ss_pred EEEecCCC-chHHHHHHHHHhcC
Q psy6409 1101 VSFCTKDD-SHLFYDLKQMMISS 1122 (1832)
Q Consensus 1101 i~~~~~~d-~~~~~~l~~~l~~~ 1122 (1832)
++|+++.+ ..++..+.++++..
T Consensus 440 i~~~~~~~~~~~~~~i~~~~~~~ 462 (479)
T 3fmp_B 440 VNMVDSKHSMNILNRIQEHFNKK 462 (479)
T ss_dssp -----------------------
T ss_pred EEEEcCcchHHHHHHHHHHhCCC
Confidence 99999775 66777777665443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=473.00 Aligned_cols=355 Identities=35% Similarity=0.565 Sum_probs=319.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
.+|++++|++.++++|.+.||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+. ...++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~----------~~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----------ENNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----------SSSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc----------ccCCC
Confidence 47999999999999999999999999999999999998 79999999999999999999987542 13577
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++|+++|+.|+.+.+.++....++.+..++||.....+...+. +++|+|+||++|.+.+..+...+.++++||+|
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 154 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILD 154 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEe
Confidence 89999999999999999999998888899999999998776655554 79999999999999998888889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.+++|...+..++..++ ...+++++|||++..+..+...++.++..+...
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 209 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACN-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKAK 209 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSC-------------------------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred CchHhhhhchHHHHHHHHHhCC-------------------------CCceEEEEeeccCHHHHHHHHHHcCCCeEEEec
Confidence 9999999999999988887663 346899999999999988888888876554432
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
....+.+.+..+....+...+..++. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|
T Consensus 210 ----~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 210 ----INANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp ----SSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred ----CCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 22356677777788889988888887 5667899999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1123 (1832)
++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+|||||.|+.|.|++++++.|...+..+.+.+..+.
T Consensus 285 ~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 285 KQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp HTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred HcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776543
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=478.68 Aligned_cols=369 Identities=30% Similarity=0.536 Sum_probs=322.5
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||+|||++|++|++..+.. ...+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 46999999999999999999999999999999999999999999999999999999999876432 234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+||++||++|+.|+++.+.++.... ++++..++|+.........+.. .++|+|+||++|..++......+.++++|||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 9999999999999999999997766 7899999999887766655544 4799999999999999888888999999999
Q ss_pred ccchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1561 DEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1561 DEaH~ll~~-gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
||||++.++ ++...+..++...+ ...|++++|||+++.+..+...++..|..+.
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 213 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 213 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEE
T ss_pred eCHHHHhhccchHHHHHHHHhhCC-------------------------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEE
Confidence 999999874 67777777776554 3478999999999999999999999988777
Q ss_pred EcccCC-CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 1640 IGSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718 (1832)
Q Consensus 1640 i~~~~~-~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il 1718 (1832)
+..... ....+.+.+..+....+...+..++.....+++||||+++.+|+.++..|...++.+..+||++++.+|..++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 214 VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp CCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 655432 3355677777788888999999999888889999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCC-hhHHHHHHHHhhcC
Q psy6409 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYDLKQMMISS 1797 (1832)
Q Consensus 1719 ~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~~~l~~~l~~~ 1797 (1832)
+.|++|+.+|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.+ ..++..+.+.+. .
T Consensus 294 ~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 372 (391)
T 1xti_A 294 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE-V 372 (391)
T ss_dssp HHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTT-C
T ss_pred HHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhc-C
Confidence 99999999999999999999999999999999999999999999999999999999999999874 566666766553 3
Q ss_pred CCCCCChhh
Q psy6409 1798 PVSTCPPEL 1806 (1832)
Q Consensus 1798 ~~~~~~~~L 1806 (1832)
+...+|.++
T Consensus 373 ~~~~~~~~~ 381 (391)
T 1xti_A 373 NISELPDEI 381 (391)
T ss_dssp CCEECCSCC
T ss_pred ChhhCCccc
Confidence 345666553
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=496.15 Aligned_cols=365 Identities=30% Similarity=0.528 Sum_probs=189.0
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
...++..+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~--------- 85 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------- 85 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------
Confidence 34567788999999999999999999999999999999999999999999999999999999999976532
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
...++++||++||++|+.|+.+.+.+++...++++..++||.....+...+. +++|+|+||++|.+.+.+..+.+..++
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~ 164 (394)
T 1fuu_A 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIK 164 (394)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCc
Confidence 2357799999999999999999999999889999999999998766655544 689999999999999988888889999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+||+||||++.+++|...+..++..++ ...|++++|||+++.+..+...++..|.
T Consensus 165 ~vIiDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 219 (394)
T 1fuu_A 165 MFILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPV 219 (394)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEECSSCCHHHHHHHHHHCCSCE
T ss_pred EEEEEChHHhhCCCcHHHHHHHHHhCC-------------------------CCceEEEEEEecCHHHHHHHHHhcCCCe
Confidence 999999999999999999999988774 2368999999999999999999999998
Q ss_pred EEEEcccCCCCcceEEEEEEcchh-hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 962 TVYIGSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~~~~-~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
.+.+.........+.+.+..+... .+...+..++......++||||++++.++.+++.|...++.+..+||++++.+|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 299 (394)
T 1fuu_A 220 RILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 299 (394)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred EEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHH
Confidence 887766554445555555444433 3666777777766778999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHh
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
.+++.|++|..+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|++++|...+..+.+.+.
T Consensus 300 ~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 300 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877776554
Q ss_pred c
Q psy6409 1121 S 1121 (1832)
Q Consensus 1121 ~ 1121 (1832)
.
T Consensus 380 ~ 380 (394)
T 1fuu_A 380 T 380 (394)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=475.27 Aligned_cols=365 Identities=32% Similarity=0.545 Sum_probs=316.5
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~ 1478 (1832)
...+|++++|++.++++|...||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.. ..
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------~~ 73 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---------ED 73 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------TC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---------CC
Confidence 4578999999999999999999999999999999999998 999999999999999999999876532 23
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeE
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~ll 1558 (1832)
.++++|||+||++|+.|+++.+++++...++.+..++|+...... ..+++|+|+||+++.+.+.+....+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 567899999999999999999999998888888888877654322 3368999999999999999888889999999
Q ss_pred EEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1559 VLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1559 ViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
||||||++.+ .++...+..+...++ ...|++++|||+++.+..+...++..+..
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 204 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANT 204 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSCSCEE
T ss_pred EEEChhhhcCccccHHHHHHHHHhCC-------------------------CCcEEEEEEecCCHHHHHHHHHhCCCCeE
Confidence 9999999988 677777877777664 34689999999999999999999988888
Q ss_pred EEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1638 VYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1638 v~i~~~~~~~~~i~q~~~~~-~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
+...........+.+.+..+ ....+...+..++.....+++||||+++.+|+.++..|...++.+..+||++++.+|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 284 (395)
T 3pey_A 205 LELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDR 284 (395)
T ss_dssp ECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred EEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 77766666666677766665 45567777778887777889999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC------CHHHHHHHhcccccCCCccEEEEEeeCCC-hhHHHH
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYD 1789 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~~~ 1789 (1832)
+++.|++|+++|||||+++++|||+|++++||+||+|. |..+|+||+|||||.|+.|.|++|+++.+ ..++..
T Consensus 285 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 364 (395)
T 3pey_A 285 LIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSA 364 (395)
T ss_dssp HHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999764 455666
Q ss_pred HHHHhhcCCCCCCC
Q psy6409 1790 LKQMMISSPVSTCP 1803 (1832)
Q Consensus 1790 l~~~l~~~~~~~~~ 1803 (1832)
+.+.+...+...+|
T Consensus 365 i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 365 IQKYFGDIEMTRVP 378 (395)
T ss_dssp HHHHTTSCCCEECC
T ss_pred HHHHhCCceeecCC
Confidence 66655423333333
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=477.74 Aligned_cols=360 Identities=30% Similarity=0.498 Sum_probs=315.0
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
.++.+|++++|++.++++|..+||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.. .
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~ 92 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------A 92 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------T
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---------c
Confidence 45778999999999999999999999999999999999987 999999999999999999999876532 2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc-cccccCCc
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQC 1555 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v 1555 (1832)
..++++|||+||++|+.|+++.+.+++... ++.+....|+...... ...+++|+|+||++|.+++.+ ..+.+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 346789999999999999999999987654 6777778877664432 234689999999999999865 56678999
Q ss_pred eeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC
Q psy6409 1556 TYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634 (1832)
Q Consensus 1556 ~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~ 1634 (1832)
++|||||||++++ .++...+..+...++ ...|++++|||+++.+..+...++.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 224 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 224 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------CCceEEEEEeecCHHHHHHHHHhcCC
Confidence 9999999999987 678888887777664 34799999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~ 1713 (1832)
|..+.+.........+.+.+..+. ...+...+..++......++||||+++.+|+.++..|...++.+..+||+|++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQ 304 (412)
T ss_dssp CEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred CeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHH
Confidence 988877776666677777766654 4567788888888777889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccCCCccEEEEEeeCCC-hhH
Q psy6409 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHL 1786 (1832)
Q Consensus 1714 R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~ 1786 (1832)
|..+++.|++|+++|||||+++++|||+|++++||+||+| .+..+|+||+|||||.|+.|.|++|+++.+ ...
T Consensus 305 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 384 (412)
T 3fht_A 305 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 384 (412)
T ss_dssp HHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHH
Confidence 9999999999999999999999999999999999999999 578999999999999999999999999775 677
Q ss_pred HHHHHHHhhc
Q psy6409 1787 FYDLKQMMIS 1796 (1832)
Q Consensus 1787 ~~~l~~~l~~ 1796 (1832)
+..+.+.+..
T Consensus 385 ~~~i~~~~~~ 394 (412)
T 3fht_A 385 LNRIQEHFNK 394 (412)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCC
Confidence 7777776643
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=489.55 Aligned_cols=376 Identities=30% Similarity=0.523 Sum_probs=187.2
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1398 ~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
...+..+|++++|++.+++.|..+||..|+|+|.++++.++.|++++++||||||||++|++|++..+.. .
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~---------~ 86 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---------S 86 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------T
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------c
Confidence 4456678999999999999999999999999999999999999999999999999999999999876532 2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCcee
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~l 1557 (1832)
..++++||++|+++|+.|+++.+.+++...++++..++|+.........+. +++|+|+||+++.+.+......+.++++
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKM 165 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 356789999999999999999999999888999999999988766544444 6899999999999999888888899999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
||+||||++.+++|...+..++..++ ...|++++|||+++.+..+...++..|..
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 220 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVR 220 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEECSSCCHHHHHHHHHHCCSCEE
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCC-------------------------CCceEEEEEEecCHHHHHHHHHhcCCCeE
Confidence 99999999999999999999988775 34689999999999998889899999888
Q ss_pred EEEcccCCCCcceEEEEEEcchh-hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1638 VYIGSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1638 v~i~~~~~~~~~i~q~~~~~~~~-~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
+.+.........+.+.+..+... .+...+..++......++||||+++.+++.++..|...++.+..+||++++.+|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 300 (394)
T 1fuu_A 221 ILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 300 (394)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHH
Confidence 77765544444555554444433 36667777777667789999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+++..
T Consensus 301 ~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 301 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888876654
Q ss_pred CCCCCCChhhcCC
Q psy6409 1797 SPVSTCPPELLNH 1809 (1832)
Q Consensus 1797 ~~~~~~~~~L~~h 1809 (1832)
. ...+|..+.+.
T Consensus 381 ~-~~~~~~~~~~~ 392 (394)
T 1fuu_A 381 Q-IEELPSDIATL 392 (394)
T ss_dssp -------------
T ss_pred c-ccccCcchhhh
Confidence 4 45666655443
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=497.80 Aligned_cols=362 Identities=33% Similarity=0.505 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il--~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
|++.++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|++..+..... ....++++|||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 78899999999999999999999988765321 123467899999
Q ss_pred CcHHHHHHHHHHHHHhcC----CCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHcc-ccccCCceeEEEc
Q psy6409 1488 PTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 1561 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~----~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llViD 1561 (1832)
||++||.|+++.+.+++. ...+.+..++|+.....+...+. .+++|+|+||++|.+++... ...+..+++||||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 999999999999998752 23467888999988777766664 47999999999999998765 4578899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|++++|.+.+..|+..++... ......+|+++||||+++.+..++..++..|..+.+.
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~~------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEKN------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHC------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhhh------------------cccccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 9999999999999999987764211 1112357999999999999999999999988777665
Q ss_pred ccC----CCCcceEEEEEEcch-hhHH----HHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHc---CCcEEEEcCC
Q psy6409 1642 SVG----KPTERIEQIVYILSE-QDKR----KKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL---GYNACTLHGG 1708 (1832)
Q Consensus 1642 ~~~----~~~~~i~q~~~~~~~-~~k~----~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~---~~~v~~lHg~ 1708 (1832)
... .....+.+.+..... ..+. ..+...+.. ....++||||+++..|+.++..|... ++.+..+||+
T Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~ 324 (579)
T 3sqw_A 245 TVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324 (579)
T ss_dssp SSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred ecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 432 223345555544432 2222 233333333 46779999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++.+|+||+|||||+|+.|.|++|+++.+..++.
T Consensus 325 ~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~ 404 (579)
T 3sqw_A 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 404 (579)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh
Q psy6409 1789 DLKQMM 1794 (1832)
Q Consensus 1789 ~l~~~l 1794 (1832)
.+....
T Consensus 405 ~l~~~~ 410 (579)
T 3sqw_A 405 ELEDAK 410 (579)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887764
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=496.62 Aligned_cols=363 Identities=33% Similarity=0.505 Sum_probs=303.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il--~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
.|++.++++|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|++..+..... ....++++|||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil 152 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIV 152 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEE
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEE
Confidence 399999999999999999999999999999 67899999999999999999999988765321 12346789999
Q ss_pred cCcHHHHHHHHHHHHHhcC----CCCCeEEEEECCcchHHHHHHh-hcCCcEEEeCHHHHHHHHHcc-ccccCCceeEEE
Q psy6409 1487 APTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVL 1560 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~----~~g~~v~~l~gg~~~~~~~~~l-~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llVi 1560 (1832)
+||++||.|+++.++++.. ..+..+..++|+.....+...+ ..+++|+|+||++|.+++.+. ...+.++++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 9999999999999998642 2246688889998877766555 447999999999999998775 346889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|++++|.+.+..|+..++... ......+|+++||||+++.+..++..++..+..+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~ 294 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKN------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 294 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHC------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhcc------------------ccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999987764211 112245799999999999999999999988877766
Q ss_pred cccC----CCCcceEEEEEEcch-hhHH----HHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHc---CCcEEEEcC
Q psy6409 1641 GSVG----KPTERIEQIVYILSE-QDKR----KKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL---GYNACTLHG 1707 (1832)
Q Consensus 1641 ~~~~----~~~~~i~q~~~~~~~-~~k~----~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~---~~~v~~lHg 1707 (1832)
.... .....+.+.+..... ..+. ..+...+.. ....++||||+|+..|+.++..|... ++.+..+||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~ 374 (563)
T 3i5x_A 295 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 374 (563)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEEST
T ss_pred eccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecC
Confidence 4432 223345555544432 2222 223333333 46779999999999999999999987 899999999
Q ss_pred CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHH
Q psy6409 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~ 1787 (1832)
+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+..++
T Consensus 375 ~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~ 454 (563)
T 3i5x_A 375 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 454 (563)
T ss_dssp TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy6409 1788 YDLKQMM 1794 (1832)
Q Consensus 1788 ~~l~~~l 1794 (1832)
..+.+..
T Consensus 455 ~~l~~~~ 461 (563)
T 3i5x_A 455 RELEDAK 461 (563)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887664
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=461.18 Aligned_cols=354 Identities=36% Similarity=0.568 Sum_probs=317.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
..+|++++|++.++++|.+.||..|+|+|.++++.++.+ +++++.||||||||++|++|++..+.. ..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~ 74 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNG 74 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCC
Confidence 357999999999999999999999999999999999988 799999999999999999999876432 246
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+++||++|+++|+.|+++.+.+++...++.+..++|+.....+...+. +++|+|+||+++.+.+......+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 789999999999999999999998888899999999988776655444 7899999999999999888888999999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||++.+++|...+..++..++ ...+++++|||++.........++.++..+..
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 208 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACN-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA 208 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSC-------------------------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred eCchHhhhhchHHHHHHHHHhCC-------------------------CCceEEEEeeccCHHHHHHHHHHcCCCeEEEe
Confidence 99999999999988888887664 34689999999999998888888877655443
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
. ....+.+.+..+....+...+..++. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.
T Consensus 209 ~----~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 283 (367)
T 1hv8_A 209 K----INANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRL 283 (367)
T ss_dssp C----SSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHH
T ss_pred c----CCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHH
Confidence 2 23356677777788888888888887 566789999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 284 f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 284 FKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp HHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred HHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887754
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=500.06 Aligned_cols=367 Identities=29% Similarity=0.500 Sum_probs=177.1
Q ss_pred ceecCCCCCCC---cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHH
Q psy6409 1391 ITIKGGKVPDP---VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWI 1465 (1832)
Q Consensus 1391 i~~~~~~~p~p---~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l 1465 (1832)
+.+.+...+.| +.+|.+++|++.++++|..+||..|+|+|.++++.++.+ +|+|++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 33444444443 568999999999999999999999999999999999987 9999999999999999999998654
Q ss_pred hhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHH
Q psy6409 1466 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544 (1832)
Q Consensus 1466 ~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~ 1544 (1832)
.. ...++++|||+||++|+.|++..+.+++... ++.+....++...... ...+++|+|+||++|.++
T Consensus 157 ~~---------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 157 EP---------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp CT---------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred hh---------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHH
Confidence 22 2346689999999999999999999987654 5677777776654322 133679999999999999
Q ss_pred HHc-cccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh
Q psy6409 1545 LEN-RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622 (1832)
Q Consensus 1545 l~~-~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~ 1622 (1832)
+.+ ..+.+.++++|||||||+|++ .+|...+..++..++ ..+|++++|||++.
T Consensus 225 l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFED 279 (479)
T ss_dssp HTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC-------------------------TTSEEEEEESCCCH
T ss_pred HHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC-------------------------ccceEEEEeCCCCH
Confidence 965 456789999999999999987 577777777776654 34799999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCc
Q psy6409 1623 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1701 (1832)
Q Consensus 1623 ~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~ 1701 (1832)
.+..++..++.+|..+.+.........+.+.+..+.. ..+...++.++......++||||+++.+|+.++..|...++.
T Consensus 280 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~ 359 (479)
T 3fmp_B 280 SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQ 359 (479)
T ss_dssp HHHHHHHHHSSSEEEEEEC-------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCcc
Confidence 9999999999999888877766666666666655543 567777888887777789999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccCCCccEE
Q psy6409 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLA 1775 (1832)
Q Consensus 1702 v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~g~~G~a 1775 (1832)
+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+| .++.+|+||+|||||+|+.|.|
T Consensus 360 v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999 4678999999999999999999
Q ss_pred EEEeeCCC-hhHHHHHHHHh
Q psy6409 1776 VSFCTKDD-SHLFYDLKQMM 1794 (1832)
Q Consensus 1776 i~~~~~~d-~~~~~~l~~~l 1794 (1832)
++|+++.+ ..++..+.+.+
T Consensus 440 i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 440 VNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp --------------------
T ss_pred EEEEcCcchHHHHHHHHHHh
Confidence 99999875 55665555544
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=451.88 Aligned_cols=334 Identities=31% Similarity=0.549 Sum_probs=291.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|++.+.++|+++||..|+|+|.++++.+++|++++++||||||||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999999742 5679999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~ 894 (1832)
++|+.|+.+.+.+++...++.+..++||.....+...+. .++|+|+||++|.+.+....+.+..+++||+||||++.++
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc
Confidence 999999999999999888999999999998776655554 5999999999999999888778899999999999999999
Q ss_pred CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcc
Q psy6409 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974 (1832)
Q Consensus 895 gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~ 974 (1832)
+|...+..++..++ ...+++++|||+|+.+......++.++..+... .....
T Consensus 145 ~~~~~~~~~~~~~~-------------------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 196 (337)
T 2z0m_A 145 GFIDDIKIILAQTS-------------------------NRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLAN 196 (337)
T ss_dssp TCHHHHHHHHHHCT-------------------------TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGG
T ss_pred ccHHHHHHHHhhCC-------------------------cccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCC
Confidence 99999999888764 236889999999999999999998887665322 22344
Q ss_pred eEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VL 1054 (1832)
+.+.+..+....+ .....+......++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+||
T Consensus 197 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 270 (337)
T 2z0m_A 197 VEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDML 270 (337)
T ss_dssp EEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred ceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEE
Confidence 5555555544332 23356666778899999999999999998886 68899999999999999999999999999
Q ss_pred EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1055 VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|||+++++|+|+|++++||+|++|.|..+|+||+|||||.|+.|.|++|+. .+...+..+.+.+
T Consensus 271 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 271 ITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 7777777776654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=476.86 Aligned_cols=345 Identities=21% Similarity=0.309 Sum_probs=282.8
Q ss_pred CCcccCcc--cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 724 PDPVRNWK--EASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 724 p~p~~~f~--~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
+.....|. ++++++.+.++|++ +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------ 82 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------ 82 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------
Confidence 44455665 47788999999998 7999999999999999999999999999999999999999973
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH------hcCCceeecCHHHHH------H
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL------RLGCEIVIATPGRLI------D 868 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l------~~~~~IlV~TP~rL~------d 868 (1832)
..+.+|||+|+++|+.|+...+..+ |+.+..+.|+....+....+ ...++|+|+||++|. +
T Consensus 83 ---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~ 155 (591)
T 2v1x_A 83 ---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMS 155 (591)
T ss_dssp ---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHH
T ss_pred ---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHH
Confidence 1458999999999999999999987 78899999998876554322 346899999999874 2
Q ss_pred HHHccccccCCceeEEEecchhhhcCC--ChHHHHHH--HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec
Q psy6409 869 VLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKI--LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 944 (1832)
Q Consensus 869 ~l~~~~~~l~~~~~lViDEaH~l~d~g--f~~~i~~I--l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT 944 (1832)
.+. ....+..+++|||||||++++|| |++.+..+ +... .+..++++||||
T Consensus 156 ~l~-~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~-------------------------~~~~~ii~lSAT 209 (591)
T 2v1x_A 156 RLE-KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ-------------------------FPNASLIGLTAT 209 (591)
T ss_dssp HHH-HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH-------------------------CTTSEEEEEESS
T ss_pred HHH-hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh-------------------------CCCCcEEEEecC
Confidence 232 24467899999999999999998 88877552 1111 124789999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc--chhhHHHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHH
Q psy6409 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL--SEQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 945 l~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~--~~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~ 1021 (1832)
+++.+...+..++..+..+.+..... ..++...+... ....+...|.+++.. ..+.++||||++++.|+.++..|.
T Consensus 210 ~~~~v~~~i~~~l~~~~~~~~~~~~~-r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 210 ATNHVLTDAQKILCIEKCFTFTASFN-RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp CCHHHHHHHHHHTTCCSCEEEECCCC-CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcEEEecCCC-CcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHH
Confidence 99998888777776654433332222 22333333322 234566777777764 366789999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEE
Q psy6409 1022 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1101 (1832)
Q Consensus 1022 ~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai 1101 (1832)
..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|+
T Consensus 289 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 289 NLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCchHHHH
Q psy6409 1102 SFCTKDDSHLFYD 1114 (1832)
Q Consensus 1102 ~~~~~~d~~~~~~ 1114 (1832)
+|+++.|...+..
T Consensus 369 ~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 369 LYYGFGDIFRISS 381 (591)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEEChHHHHHHHH
Confidence 9999887544433
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=441.60 Aligned_cols=334 Identities=31% Similarity=0.549 Sum_probs=290.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
|++.+.++|+.+||..|+|+|.++++.+++++++++++|||||||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999998742 5679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcC
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~ 1569 (1832)
++|+.|+++.+++++...+.++..++|+.....+...+. .++|+|+||++|.+.+....+.+.++++||+||||++.++
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc
Confidence 999999999999998888999999999988776655444 5899999999999999888888899999999999999999
Q ss_pred CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcc
Q psy6409 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649 (1832)
Q Consensus 1570 gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~ 1649 (1832)
+|...+..++..++ ...+++++|||++..+......++..+..+... .....
T Consensus 145 ~~~~~~~~~~~~~~-------------------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 196 (337)
T 2z0m_A 145 GFIDDIKIILAQTS-------------------------NRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLAN 196 (337)
T ss_dssp TCHHHHHHHHHHCT-------------------------TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGG
T ss_pred ccHHHHHHHHhhCC-------------------------cccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCC
Confidence 99999988887775 346789999999999998888888887665322 22334
Q ss_pred eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
+.+.+..+....+ .....+......++||||+++++++.++..|. .+..+||+++..+|..+++.|++|+++||
T Consensus 197 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 270 (337)
T 2z0m_A 197 VEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDML 270 (337)
T ss_dssp EEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred ceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEE
Confidence 5555555544332 23356666778899999999999999998876 68899999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
|||+++++|||+|++++||+|++|.|..+|+||+||+||.|+.|.|++|+. .+...+..+.+.+
T Consensus 271 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 271 ITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 7777887776655
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=467.94 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=281.9
Q ss_pred ccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 727 VRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||||||++|++|++.. .
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~ 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------N 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------S
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------C
Confidence 4679999999999999998 89999999999999999999999999999999999999999731 3
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH---HH-hcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL-RLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l-~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
+.+|||+|+++|+.|+...+..+ |+.+..+.|+.+..+... .+ ...++|+|+||++|........+....+.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 57999999999999999999885 778888888887654432 22 23589999999999633222334457899
Q ss_pred eEEEecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc--
Q psy6409 882 YIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-- 957 (1832)
Q Consensus 882 ~lViDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l-- 957 (1832)
+|||||||++.+|| |.+.+..|.... ...+..+++++|||+++.+.......+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~-----------------------~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLR-----------------------QRFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHH-----------------------HHCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHH-----------------------HhCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 99999999999988 888776543211 011246899999999987755333333
Q ss_pred CCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 958 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1037 (1832)
Q Consensus 958 ~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~ 1037 (1832)
.+|. +.+.....+ ++.. .......+...+.+++....+.++||||++++.|+.+++.|...|+.+..+||+|++.
T Consensus 199 ~~~~-~~~~~~~r~--~l~~--~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~ 273 (523)
T 1oyw_A 199 NDPL-IQISSFDRP--NIRY--MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 273 (523)
T ss_dssp CSCE-EEECCCCCT--TEEE--EEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCCe-EEeCCCCCC--ceEE--EEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 3443 444433332 2322 2333456777888888877778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|++|+++.|...+..+.
T Consensus 274 ~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 274 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp HHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988866555443
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=466.52 Aligned_cols=346 Identities=20% Similarity=0.307 Sum_probs=282.4
Q ss_pred CCCcCCccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccc
Q psy6409 1399 PDPVRNWKE--ASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 1475 (1832)
Q Consensus 1399 p~p~~~~~e--~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~ 1475 (1832)
+.....|.. +++++.+.+.|+. +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------ 82 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------ 82 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------
Confidence 444556664 6788999999998 7999999999999999999999999999999999999999973
Q ss_pred ccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh------hcCCcEEEeCHHHHHH---HHH
Q psy6409 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL------RLGCEIVIATPGRLID---VLE 1546 (1832)
Q Consensus 1476 ~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l------~~~~~IiVaTP~rl~~---~l~ 1546 (1832)
.++.+|||+|+++|+.|+.+.+.++ |+.+..+.|+.+.......+ ...++|+|+||++|.. ++.
T Consensus 83 ---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~ 155 (591)
T 2v1x_A 83 ---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMS 155 (591)
T ss_dssp ---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHH
T ss_pred ---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHH
Confidence 2458999999999999999999997 67888999998876543321 3468999999998742 221
Q ss_pred --ccccccCCceeEEEccchhhhcCC--ChHHHHHH---HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc
Q psy6409 1547 --NRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKI---LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 1619 (1832)
Q Consensus 1547 --~~~~~l~~v~llViDEaH~ll~~g--f~~~l~~I---l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT 1619 (1832)
.....+.++++|||||||++.+|| |++.+..+ ...+ +..++++||||
T Consensus 156 ~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~--------------------------~~~~ii~lSAT 209 (591)
T 2v1x_A 156 RLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF--------------------------PNASLIGLTAT 209 (591)
T ss_dssp HHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC--------------------------TTSEEEEEESS
T ss_pred HHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC--------------------------CCCcEEEEecC
Confidence 124567899999999999999998 88776542 1222 34689999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc--hhhHHHHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHH
Q psy6409 1620 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS--EQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1620 l~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~--~~~k~~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
+++.+...+..++..+..+.+... ....++...+.... ...+...+..++.. ....++||||+|++.|+.++..|.
T Consensus 210 ~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 210 ATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp CCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHH
Confidence 999988877777765544333222 12223333333222 34556677777764 367899999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEE
Q psy6409 1697 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776 (1832)
Q Consensus 1697 ~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai 1776 (1832)
..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|+
T Consensus 289 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 289 NLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHH
Q psy6409 1777 SFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1777 ~~~~~~d~~~~~~l 1790 (1832)
+|+++.|...+..+
T Consensus 369 ~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 369 LYYGFGDIFRISSM 382 (591)
T ss_dssp EEECHHHHHHHHHH
T ss_pred EEEChHHHHHHHHH
Confidence 99998776555443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=460.83 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=281.2
Q ss_pred cCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.++.|+|++++||||||||+||++|++. ..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---------------~~ 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------------LN 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------------SS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---------------hC
Confidence 3578999999999999998 8999999999999999999999999999999999999999973 13
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hh-hcCCcEEEeCHHHHHHHHHccccccCCce
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL-RLGCEIVIATPGRLIDVLENRYLVLNQCT 1556 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l-~~~~~IiVaTP~rl~~~l~~~~~~l~~v~ 1556 (1832)
..+|||+|+++|+.|+.+.+..+ |+.+..+.|+.+...... .+ ...++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 57999999999999999999886 677888888877654322 22 34589999999999633222334457899
Q ss_pred eEEEccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc--
Q psy6409 1557 YIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-- 1632 (1832)
Q Consensus 1557 llViDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l-- 1632 (1832)
+|||||||++.++| |++.+..+..... ..+..+++++|||+++.+...+..++
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~-----------------------~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQ-----------------------RFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHH-----------------------HCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHH-----------------------hCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 99999999999987 7777665422110 11236799999999988765444333
Q ss_pred CCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 1633 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712 (1832)
Q Consensus 1633 ~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~ 1712 (1832)
.+| .+.+.....+ ++. +.......+...+..++......++||||+|++.|+.++..|...|+.+..+||+|++.
T Consensus 199 ~~~-~~~~~~~~r~--~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~ 273 (523)
T 1oyw_A 199 NDP-LIQISSFDRP--NIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 273 (523)
T ss_dssp CSC-EEEECCCCCT--TEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCC-eEEeCCCCCC--ceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 344 3444443333 232 22333456677788888877788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHH
Q psy6409 1713 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1791 (1832)
+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|++|+++.|...+..+.
T Consensus 274 ~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 274 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp HHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988766555443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=451.19 Aligned_cols=337 Identities=20% Similarity=0.310 Sum_probs=270.3
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 738 EILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 738 ~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
.+.+.+++ +|| +|+|+|.++++.++.|+|+|++||||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 44555555 576 89999999999999999999999999999999999988654 34789999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcCCch---HHHHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~i~v~~~~Gg~~~---~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
||.|+++.+.+++. .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+..+++|||||||++.
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhh
Confidence 99999999999988 89999999999987 5556666666 99999999999888864 567899999999998665
Q ss_pred c-----------CCChHH-HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec-CChHHH-HHHHHhcC
Q psy6409 893 D-----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVE-RLARSYLR 958 (1832)
Q Consensus 893 d-----------~gf~~~-i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT-l~~~v~-~~~~~~l~ 958 (1832)
+ +||.+. +..++..++...... ........|++++||| +|..+. .+...++.
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~--------------~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE--------------RPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC--------------CCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhh--------------hcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 4 788888 777777653100000 0011145799999999 665544 33333333
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEE-EEcCCCCHH
Q psy6409 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQE 1037 (1832)
Q Consensus 959 ~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~-~lhg~~~~~ 1037 (1832)
+.+.........+.+.+..+ .+...+.+++.. .+.++||||+++..|+.++..|...|+.+. .+||.
T Consensus 219 ----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~---- 286 (414)
T 3oiy_A 219 ----FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF---- 286 (414)
T ss_dssp ----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----
T ss_pred ----cCcCccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----
Confidence 22223334445566666555 345556666665 447899999999999999999999999998 89984
Q ss_pred HHHHHHHHHhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCC--CCHhHHHHHhcccccCC----CCcEEEEEecC
Q psy6409 1038 QRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMA--KSIEDYTHRIGRTGRAG----KEGLAVSFCTK 1106 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p--~s~~~yvQr~GRaGR~g----~~G~ai~~~~~ 1106 (1832)
+|. ++.|++|+++|||| |+++++|||+|+ |++||+||+| .+..+|+||+|||||.| ..|.|++|+
T Consensus 287 ~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-- 362 (414)
T 3oiy_A 287 EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-- 362 (414)
T ss_dssp HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--
T ss_pred chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--
Confidence 444 99999999999999 999999999999 9999999999 99999999999999988 479999999
Q ss_pred CCchHHHHHHHHHh
Q psy6409 1107 DDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1107 ~d~~~~~~l~~~l~ 1120 (1832)
+|...+..+.+.+.
T Consensus 363 ~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 363 EDEEIFESLKTRLL 376 (414)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 67778888888776
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=469.14 Aligned_cols=333 Identities=22% Similarity=0.326 Sum_probs=269.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
.+|++++||+++.+.+++.||..|+|+|.++++. +..++|+|++||||||||++|.+|++..+.. .+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----------NGG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----------CCC
Confidence 4699999999999999999999999999999999 7789999999999999999999999987632 267
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+++|++|+++||.|++..++.+ ..+|++++.++|+....... ...++|+|+|||+|..++.+....++++++||||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 9999999999999999999654 45689999999998765542 2379999999999999888776668999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.+.++++.++.++.+++ ..|++++|||+++ ...++..+ ..+. +.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~--------------------------~~~ii~lSATl~n-~~~~~~~l-~~~~-~~-- 201 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK--------------------------RRNLLALSATISN-YKQIAKWL-GAEP-VA-- 201 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH--------------------------TSEEEEEESCCTT-HHHHHHHH-TCEE-EE--
T ss_pred chhhcCCcccchHHHHHHHhcc--------------------------cCcEEEEcCCCCC-HHHHHHHh-CCCc-cC--
Confidence 9999998899999999887763 3799999999986 45566544 3221 11
Q ss_pred ccCCCCcceEEE------------EEEcc--------hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcC--
Q psy6409 967 SVGKPTERIEQI------------VYILS--------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-- 1024 (1832)
Q Consensus 967 ~~~~~~~~i~q~------------~~~~~--------~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g-- 1024 (1832)
....+.. +... +.+.. .......+.+.+. .++++||||++++.|+.++..|....
T Consensus 202 ~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~ 278 (715)
T 2va8_A 202 TNWRPVP-LIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNF 278 (715)
T ss_dssp CCCCSSC-EEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCC-ceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhh
Confidence 1111111 1111 11111 2344555555554 56799999999999999999998642
Q ss_pred ----------------------------------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC
Q psy6409 1025 ----------------------------------YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070 (1832)
Q Consensus 1025 ----------------------------------~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~ 1070 (1832)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 358 (715)
T 2va8_A 279 VSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPART 358 (715)
T ss_dssp SCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSE
T ss_pred ccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceE
Confidence 3599999999999999999999999999999999999999999999
Q ss_pred EEEE----cC-------CCCCHhHHHHHhcccccCCC--CcEEEEEecCCCc
Q psy6409 1071 MVIN----YD-------MAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDS 1109 (1832)
Q Consensus 1071 ~VI~----~d-------~p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~ 1109 (1832)
+||+ || .|.|..+|+||+|||||.|. .|.|++++++.+.
T Consensus 359 ~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 359 VIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp EEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred EEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999 99 89999999999999999984 6999999987763
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=483.63 Aligned_cols=461 Identities=18% Similarity=0.212 Sum_probs=323.2
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 729 NWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 729 ~f~~~~--L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+|++++ ||+.+.+.+++.||..|+|+|.++++.+++|+|+|++||||||||++|.+|++..+. .++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~------------~~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------------KGG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------------TTC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH------------hCC
Confidence 578888 999999999999999999999999999999999999999999999999999997653 256
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++|+++||.|+++.++.+ ..+|++++.++|+....... ...++|+|+|||+|..++.+....++++++||||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred cEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 8999999999999999999654 45699999999988765431 2379999999999998888876668999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.++++++.+..++..+.. .....|++++|||+++ ...++.. +..+. +..
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~----------------------~~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~- 199 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRR----------------------MNKALRVIGLSATAPN-VTEIAEW-LDADY-YVS- 199 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHH----------------------HCTTCEEEEEECCCTT-HHHHHHH-TTCEE-EEC-
T ss_pred eeeecCCCCcccHHHHHHHHHHh----------------------cCcCceEEEECCCcCC-HHHHHHH-hCCCc-ccC-
Confidence 99999999999999998876620 1235899999999986 5556654 43322 111
Q ss_pred ccCCCCcceEEEE------EEcchh-------hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc----------
Q psy6409 967 SVGKPTERIEQIV------YILSEQ-------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------- 1023 (1832)
Q Consensus 967 ~~~~~~~~i~q~~------~~~~~~-------~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------- 1023 (1832)
...+. .+...+ ...... .....+.+.+. .++++||||++++.|+.++..|...
T Consensus 200 -~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 275 (702)
T 2p6r_A 200 -DWRPV-PLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGL 275 (702)
T ss_dssp -CCCSS-CEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred -CCCCc-cceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHH
Confidence 11111 111111 111111 14555555554 5678999999999999999988753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC---
Q psy6409 1024 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1076 (1832)
Q Consensus 1024 --------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d--- 1076 (1832)
+.++.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCC
Confidence 246889999999999999999999999999999999999999999999998 77
Q ss_pred CCCCHhHHHHHhcccccCC--CCcEEEEEecCCCchHHH-------------------HHHHHHhcCCcccccccccccc
Q psy6409 1077 MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFY-------------------DLKQMMISSPVTGRAGKEGLAV 1135 (1832)
Q Consensus 1077 ~p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~~~~~-------------------~l~~~l~~~~~~~~~~~~~~~v 1135 (1832)
.|.|..+|+||+|||||.| ..|.|++++++.+...+. .+.+++++.+..|++.+..+..
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 435 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELE 435 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999998 469999999987622111 2233334444444444444555
Q ss_pred cccccCCchhHHHHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCcccccc
Q psy6409 1136 SFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQ 1215 (1832)
Q Consensus 1136 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1832)
.|+..+....... . .....+..........|.+... .....+.+|+..+.+
T Consensus 436 ~~l~~t~~~~~~~-------~---~~~~~~~~al~~L~~~g~i~~~-------------------~~~~~t~lG~~~~~~ 486 (702)
T 2p6r_A 436 DFFADTFFFKQNE-------I---SLSYELERVVRQLENWGMVVEA-------------------AHLAPTKLGSLVSRL 486 (702)
T ss_dssp HHHHTSTTHHHHC-------C---CCHHHHHHHHHHHHHTTSEEES-------------------SSEEECHHHHHHHHT
T ss_pred HHHHhhhHHHhhh-------H---HHHHHHHHHHHHHHHCcCeeEC-------------------CeeccChHHHHHHHH
Confidence 5543222111000 0 0000000000000000000000 112345567777777
Q ss_pred cccCccc-ccccCCCcc-ccchhHhhhhccCchhhhhhcccchHHHHHHHH
Q psy6409 1216 CEAQSSR-FSACSLPRS-HKSSSLLSRYSEQDPEEKELNKDKEREGEAIKE 1264 (1832)
Q Consensus 1216 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~ 1264 (1832)
+..+.+. ......... .+...++..++...+|..+.+|..|+++..+..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~ 537 (702)
T 2p6r_A 487 YIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAF 537 (702)
T ss_dssp TCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHHHHHHHH
Confidence 7665542 111111111 556688888999999988888877666665543
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=440.91 Aligned_cols=337 Identities=20% Similarity=0.310 Sum_probs=267.7
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1413 EILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1413 ~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.+.+.+++ +|| .|+|+|.++++.++.|+|++++||||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 34455554 577 89999999999999999999999999999999999988654 24788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCcch---HHHHHHhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1492 La~Qi~~~~~~~~~~~g~~v~~l~gg~~~---~~~~~~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
|+.|+++.+++++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhh
Confidence 99999999999988 89999999999987 4555566666 99999999999888764 667899999999998765
Q ss_pred c-----------CCChHH-HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc-CChHHH-HHHHHhcC
Q psy6409 1568 D-----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVE-RLARSYLR 1633 (1832)
Q Consensus 1568 ~-----------~gf~~~-l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT-l~~~~~-~~~~~~l~ 1633 (1832)
+ ++|.+. +..++..++...... ........|++++||| +|..+. .+...++.
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~--------------~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE--------------RPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC--------------CCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhh--------------hcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 4 677777 777776653100000 0001145799999999 565543 23333332
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEE-EEcCCCCHH
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQE 1712 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~-~lHg~ls~~ 1712 (1832)
+.+.........+.+.+... .+...+.+++.. .+.++||||+++.+|+.++..|...|+.+. .+||.
T Consensus 219 ----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~---- 286 (414)
T 3oiy_A 219 ----FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF---- 286 (414)
T ss_dssp ----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----
T ss_pred ----cCcCccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----
Confidence 11222333445566666554 455666777766 348999999999999999999999999998 89984
Q ss_pred HHHHHHHHhhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCC--CCHHHHHHHhcccccCC----CccEEEEEeeC
Q psy6409 1713 QRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMA--KSIEDYTHRIGRTGRAG----KEGLAVSFCTK 1781 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P--~s~~~yiQRiGRaGR~g----~~G~ai~~~~~ 1781 (1832)
+|. ++.|++|+++|||| |+++++|||+|+ |++||+||+| .+..+|+||+|||||.| ..|.+++|+
T Consensus 287 ~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-- 362 (414)
T 3oiy_A 287 EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-- 362 (414)
T ss_dssp HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--
T ss_pred chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--
Confidence 444 99999999999999 999999999999 9999999999 99999999999999987 589999999
Q ss_pred CChhHHHHHHHHhh
Q psy6409 1782 DDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1782 ~d~~~~~~l~~~l~ 1795 (1832)
.|...+..+.+.+.
T Consensus 363 ~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 363 EDEEIFESLKTRLL 376 (414)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 67777777777665
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=447.03 Aligned_cols=384 Identities=20% Similarity=0.272 Sum_probs=287.5
Q ss_pred hhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHH-----HHcCCCCCcHHHHHHHHHHHcCCcEEE
Q psy6409 696 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEII-----EKIGYAEPTPIQRQAIPIGLQNRDIIG 770 (1832)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l-----~~~g~~~pt~iQ~~ai~~il~grdvIv 770 (1832)
++.+..+++++++.....|...+..+. +++++ ||+ .+..+ ..+|| .|||+|..++|.+++|+ |+
T Consensus 33 ~~~~~~lsd~el~~~t~~~~~~~~~g~------~ld~~-l~e-a~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Ia 101 (844)
T 1tf5_A 33 RGDYENLSDDALKHKTIEFKERLEKGA------TTDDL-LVE-AFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IA 101 (844)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHHHTTC------CHHHH-HHH-HHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EE
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHhcCC------ChHHH-HHH-HHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EE
Confidence 345666777777766666655443322 12211 222 22211 24899 99999999999999999 99
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~ 850 (1832)
.|+||+|||++|+||++.... .|+.++||+||++||.|+++++..++..+|+++++++||.+...+.
T Consensus 102 ea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~- 168 (844)
T 1tf5_A 102 EMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKR- 168 (844)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHH-
T ss_pred EccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH-
Confidence 999999999999999985421 2567999999999999999999999999999999999999865543
Q ss_pred HHhcCCceeecCHHHH-HHHHHcc------ccccCCceeEEEecchhhh-cCC---------------ChHHHHHHHHhC
Q psy6409 851 RLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYM 907 (1832)
Q Consensus 851 ~l~~~~~IlV~TP~rL-~d~l~~~------~~~l~~~~~lViDEaH~l~-d~g---------------f~~~i~~Il~~l 907 (1832)
...+++|+|||||+| .|+|... .+.+..+.++||||||+|+ |++ |.+.+..|+..+
T Consensus 169 -~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l 247 (844)
T 1tf5_A 169 -EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTL 247 (844)
T ss_dssp -HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTC
T ss_pred -HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhC
Confidence 345799999999999 6776543 3578899999999999998 775 567888999888
Q ss_pred CC---------C-CC------------------CCCCchh---HHHHHHHHh-h--------------------------
Q psy6409 908 PV---------T-NL------------------KPDTEDA---EDENKLLAN-Y-------------------------- 929 (1832)
Q Consensus 908 ~~---------~-~~------------------~~~~~~~---~~~~~ll~~-~-------------------------- 929 (1832)
+. . +. ....... ......+.. .
T Consensus 248 ~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m 327 (844)
T 1tf5_A 248 KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM 327 (844)
T ss_dssp CSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBC
T ss_pred cccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccccc
Confidence 62 0 00 0000000 001111100 0
Q ss_pred -------------------c---------------cccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcce
Q psy6409 930 -------------------N---------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 975 (1832)
Q Consensus 930 -------------------~---------------~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i 975 (1832)
. -...+..+.++|+|.......|...|.-+ .+.+ +...+....
T Consensus 328 ~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~I-Ptn~p~~r~ 404 (844)
T 1tf5_A 328 KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTI-PTNRPVVRD 404 (844)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEEC-CCSSCCCCE
T ss_pred CCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEe-cCCCCcccc
Confidence 0 00113456788888877777776666433 2223 233333333
Q ss_pred EE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 976 EQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 976 ~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+ .+.++....|...|...+.. ..+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+.+.|+.| .
T Consensus 405 d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~ 482 (844)
T 1tf5_A 405 DRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A 482 (844)
T ss_dssp ECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C
T ss_pred cCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e
Confidence 32 24556788899888887764 2467899999999999999999999999999999999988888777777766 6
Q ss_pred EEEecccccccCCCc--------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1053 ILVATDVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip--------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
||||||+|+||+||+ ++.+||||++|.|...|+||+|||||+|.+|.+++|++.+|.
T Consensus 483 VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999999 888999999999999999999999999999999999998874
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=470.34 Aligned_cols=332 Identities=23% Similarity=0.293 Sum_probs=272.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
+|++++||+++.+.+++.||..|+|+|.++++. +..|+|+|++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----------QGGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----------HCSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCCE
Confidence 589999999999999999999999999999998 7889999999999999999999999987642 2579
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+||++|+++||.|+++.++++. .+|++++.++|+....... ...++|+|+|||+|..++.+....++++++|||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE 146 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEEC
Confidence 9999999999999999997654 4589999999987754432 24799999999999888887766689999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
||++.++++++.+..++.+++ ...|++++|||+++ ...++..+ ..+. + ..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~-------------------------~~~~ii~lSATl~n-~~~~~~~l-~~~~-~--~~ 196 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHML-------------------------GKAQIIGLSATIGN-PEELAEWL-NAEL-I--VS 196 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHB-------------------------TTBEEEEEECCCSC-HHHHHHHT-TEEE-E--EC
T ss_pred CcccCCCcccHHHHHHHHHhh-------------------------cCCeEEEEcCCcCC-HHHHHHHh-CCcc-c--CC
Confidence 999999999999999988774 14799999999987 45565543 3211 1 11
Q ss_pred cCCCCcceEEEE------EEcc-----hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-------------
Q psy6409 968 VGKPTERIEQIV------YILS-----EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------- 1023 (1832)
Q Consensus 968 ~~~~~~~i~q~~------~~~~-----~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------- 1023 (1832)
...+. .+...+ .... ...+...+.+.+. .++++||||++++.|+.++..|...
T Consensus 197 ~~rp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 273 (720)
T 2zj8_A 197 DWRPV-KLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRAL 273 (720)
T ss_dssp CCCSS-EEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CCCCC-cceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 11111 111111 1111 2334455555554 4578999999999999999998753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC---
Q psy6409 1024 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1076 (1832)
Q Consensus 1024 --------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d--- 1076 (1832)
..++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 274 ~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g 353 (720)
T 2zj8_A 274 NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFG 353 (720)
T ss_dssp HHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSS
T ss_pred HHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCC
Confidence 135999999999999999999999999999999999999999999999998 77
Q ss_pred -CCCCHhHHHHHhcccccCC--CCcEEEEEecCCC
Q psy6409 1077 -MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDD 1108 (1832)
Q Consensus 1077 -~p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d 1108 (1832)
.|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 354 ~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 354 MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 5899999999999999998 4699999999887
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=480.14 Aligned_cols=332 Identities=19% Similarity=0.228 Sum_probs=270.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...|..+++++.+...+...++..|+|+|.+||+.++.|+|+|++||||||||++|++|++..+. .++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~ 228 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQ 228 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTC
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCC
Confidence 34677778888777777777888999999999999999999999999999999999999997752 367
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++||++||.|++..+.+++. .++.++|+.+. ..+++|+|+|||+|.+++.++...+.++++||||
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 899999999999999999999754 57778888773 3468999999999999998888788999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHH--HHHHHhcCCCcEEE
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE--RLARSYLRRPATVY 964 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~--~~~~~~l~~p~~v~ 964 (1832)
|||+|.+++|+..+..++..++ ...|+++||||+|+..+ .+...+...|..+.
T Consensus 298 EaH~l~d~~rg~~~e~ii~~l~-------------------------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi 352 (1108)
T 3l9o_A 298 EVHYMRDKERGVVWEETIILLP-------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIV 352 (1108)
T ss_dssp TGGGTTSHHHHHHHHHHHHHSC-------------------------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEE
T ss_pred hhhhccccchHHHHHHHHHhcC-------------------------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEE
Confidence 9999999999999999998875 34799999999987533 45555566666555
Q ss_pred EcccCCCCcceEEEEEEcc---------h----------------------------------------------hhHHH
Q psy6409 965 IGSVGKPTERIEQIVYILS---------E----------------------------------------------QDKRK 989 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~---------~----------------------------------------------~~k~~ 989 (1832)
....... .+.+.++... . ..+..
T Consensus 353 ~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (1108)
T 3l9o_A 353 YTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 430 (1108)
T ss_dssp EECCCSS--CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHH
T ss_pred ecCCCcc--cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHH
Confidence 4433221 1222221100 0 23344
Q ss_pred HHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCc---------------------------------------EEEE
Q psy6409 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN---------------------------------------ACTL 1030 (1832)
Q Consensus 990 ~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~---------------------------------------v~~l 1030 (1832)
.++..+......++||||+++..|+.++..|...++. +.++
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~ 510 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 510 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeee
Confidence 4555666666779999999999999999988543322 8999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC--------CCCHhHHHHHhcccccCC--CCcEE
Q psy6409 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AKSIEDYTHRIGRTGRAG--KEGLA 1100 (1832)
Q Consensus 1031 hg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~--------p~s~~~yvQr~GRaGR~g--~~G~a 1100 (1832)
||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ 590 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIV 590 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999997766 448889999999999999 56999
Q ss_pred EEEecCCC
Q psy6409 1101 VSFCTKDD 1108 (1832)
Q Consensus 1101 i~~~~~~d 1108 (1832)
++++++..
T Consensus 591 ill~~~~~ 598 (1108)
T 3l9o_A 591 IMMIDEKM 598 (1108)
T ss_dssp EEEECCCC
T ss_pred EEEecCCc
Confidence 99988763
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=452.97 Aligned_cols=369 Identities=21% Similarity=0.312 Sum_probs=282.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
.+|++++|++.+.+.++..||..|+|+|.++++. +.++++++++||||||||++|.+|++..+.. .+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----------NGG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----------CCC
Confidence 4699999999999999999999999999999999 7789999999999999999999999987643 267
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++||++|+++||.|++..++.+. .+|+++..++|+........ .+++|+|+|||+|..++.+....++++++||||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~---~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWL---KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGGG---GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhhc---CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 89999999999999999996553 45889999999887655422 378999999999999998877778999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++.+.+++..++.++..++ ..|++++|||+++. ..+.. |+..+. + .
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~--------------------------~~~ii~lSATl~n~-~~~~~-~l~~~~-~--~ 201 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK--------------------------RRNLLALSATISNY-KQIAK-WLGAEP-V--A 201 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH--------------------------TSEEEEEESCCTTH-HHHHH-HHTCEE-E--E
T ss_pred chhhcCCcccchHHHHHHHhcc--------------------------cCcEEEEcCCCCCH-HHHHH-HhCCCc-c--C
Confidence 9999988889999988887663 36899999999864 44444 443221 1 1
Q ss_pred ccCCCCcceEE-----------EEEEcc--------hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcC---
Q psy6409 1642 SVGKPTERIEQ-----------IVYILS--------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG--- 1699 (1832)
Q Consensus 1642 ~~~~~~~~i~q-----------~~~~~~--------~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~--- 1699 (1832)
....+...... .+.... .......+.+.+. ..+++||||++++.|+.++..|....
T Consensus 202 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~ 279 (715)
T 2va8_A 202 TNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFV 279 (715)
T ss_dssp CCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhc
Confidence 11111111111 111111 1333444444443 56899999999999999999998642
Q ss_pred ---------------------------------CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCE
Q psy6409 1700 ---------------------------------YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746 (1832)
Q Consensus 1700 ---------------------------------~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~ 1746 (1832)
.++..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~ 359 (715)
T 2va8_A 280 SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTV 359 (715)
T ss_dssp CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEE
T ss_pred cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEE
Confidence 36999999999999999999999999999999999999999999999
Q ss_pred EEE----eC-------CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcCC---CCCCCh--hhcC
Q psy6409 1747 VIN----YD-------MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSP---VSTCPP--ELLN 1808 (1832)
Q Consensus 1747 VI~----~d-------~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~~---~~~~~~--~L~~ 1808 (1832)
||+ || .|.|..+|+||+|||||.| ..|.|++++++.+. +...+.+++.... .+.+.+ .|.+
T Consensus 360 VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s~l~~~~~l~~ 438 (715)
T 2va8_A 360 IIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIESKLGSERAFYT 438 (715)
T ss_dssp EECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCCCSCCSHHHHHH
T ss_pred EEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCceecCCchhHHHH
Confidence 999 99 8999999999999999987 47999999987763 1111222332211 023322 3445
Q ss_pred CCCCcCCCCccc
Q psy6409 1809 HPDAQHKPGTVM 1820 (1832)
Q Consensus 1809 h~~a~~~~gti~ 1820 (1832)
|..+.+..|++.
T Consensus 439 ~~l~~~~~g~~~ 450 (715)
T 2va8_A 439 FLLGILSAEGNL 450 (715)
T ss_dssp HHHHHHHHHCSE
T ss_pred HHHHHHhccccC
Confidence 777777777664
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=429.47 Aligned_cols=384 Identities=19% Similarity=0.263 Sum_probs=288.0
Q ss_pred hhhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHH-----HcCCCCCcHHHHHHHHHHhcCCcEEE
Q psy6409 1371 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIE-----KIGYAEPTPIQRQAIPIGLQNRDIIG 1445 (1832)
Q Consensus 1371 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~-----~~g~~~ptpiQ~~ai~~il~g~dvii 1445 (1832)
+..+..++++++......+...+..+. ++++ +-+..+..+. .+|| .|+|+|..++|.++.|+ |+
T Consensus 33 ~~~~~~lsd~el~~~t~~~~~~~~~g~------~ld~--~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Ia 101 (844)
T 1tf5_A 33 RGDYENLSDDALKHKTIEFKERLEKGA------TTDD--LLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IA 101 (844)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHHHTTC------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EE
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHhcCC------ChHH--HHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EE
Confidence 345666777777666655555443221 1111 1122222222 4899 99999999999999999 99
Q ss_pred EcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH
Q psy6409 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 1525 (1832)
Q Consensus 1446 ~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~ 1525 (1832)
.|+||+|||++|.+|++.... .++.|+||+||++||.|++.++..++..+|+++.+++||.+...+..
T Consensus 102 ea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~ 169 (844)
T 1tf5_A 102 EMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE 169 (844)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH
T ss_pred EccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 999999999999999984321 35679999999999999999999999999999999999998765433
Q ss_pred HhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhh-cCC---------------ChHHHHHHHHhC
Q psy6409 1526 RLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYM 1582 (1832)
Q Consensus 1526 ~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll-~~g---------------f~~~l~~Il~~l 1582 (1832)
..+++|+||||++| .+++..+ .+.+..+.++||||||+|+ +.+ |.+.+..|+..+
T Consensus 170 --~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l 247 (844)
T 1tf5_A 170 --AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTL 247 (844)
T ss_dssp --HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTC
T ss_pred --hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhC
Confidence 34799999999999 7777653 3567899999999999998 664 567888899888
Q ss_pred CC----------CCCC-----------------CCCchhhh-HHHHH----hh-h-c-----------------------
Q psy6409 1583 PV----------TNLK-----------------PDTEDAED-ENKLL----AN-Y-N----------------------- 1605 (1832)
Q Consensus 1583 ~~----------~~~~-----------------~~~~~~~~-~~~l~----~~-~-~----------------------- 1605 (1832)
+. .... --+..... ...+. +. + .
T Consensus 248 ~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m 327 (844)
T 1tf5_A 248 KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM 327 (844)
T ss_dssp CSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBC
T ss_pred cccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccccc
Confidence 63 0000 00000000 00110 00 0 0
Q ss_pred -----------------------------------cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcce
Q psy6409 1606 -----------------------------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 1650 (1832)
Q Consensus 1606 -----------------------------------~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i 1650 (1832)
....+..+.++|+|.......+...|.-+ .+.+ +...+...+
T Consensus 328 ~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~I-Ptn~p~~r~ 404 (844)
T 1tf5_A 328 KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTI-PTNRPVVRD 404 (844)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEEC-CCSSCCCCE
T ss_pred CCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEe-cCCCCcccc
Confidence 00112356789999988777777766443 2333 444444444
Q ss_pred EE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1651 EQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1651 ~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+ .+.++....|...++..+.. ....|+||||+|+..++.|+..|...|+++..+||++.+.+|..+.+.|+.| .
T Consensus 405 d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~ 482 (844)
T 1tf5_A 405 DRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A 482 (844)
T ss_dssp ECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C
T ss_pred cCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e
Confidence 32 24456778898888887764 2567899999999999999999999999999999999988888777777766 6
Q ss_pred EEEEcccccccCCCC--------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1728 ILVATDVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1728 VLVATdvl~~GIDip--------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||||++++||+||+ ++.+||||++|.|...|+||+|||||+|.+|.+++|++..|.
T Consensus 483 VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999999 788999999999999999999999999999999999998874
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=454.71 Aligned_cols=366 Identities=22% Similarity=0.268 Sum_probs=288.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
+|++++|++.+.+.++..||..|+|+|.++++. +..++|++++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----------QGGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----------HCSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCCE
Confidence 488999999999999999999999999999998 8899999999999999999999999987643 2678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+||++|+++||.|+++.++++. .+|+++..++|+....... ...++|+|+||++|..++.+....++++++|||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE 146 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEEC
Confidence 9999999999999999997664 3589999999987765432 23689999999999999988777789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
||++.+++++..+..++..++ ...|++++|||+++. ..+.. |+..+. +..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~-------------------------~~~~ii~lSATl~n~-~~~~~-~l~~~~---~~~ 196 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHML-------------------------GKAQIIGLSATIGNP-EELAE-WLNAEL---IVS 196 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHB-------------------------TTBEEEEEECCCSCH-HHHHH-HTTEEE---EEC
T ss_pred CcccCCCcccHHHHHHHHHhh-------------------------cCCeEEEEcCCcCCH-HHHHH-HhCCcc---cCC
Confidence 999998899999999988774 147899999999874 44444 443211 111
Q ss_pred cCCCCcceEEEE------EEcc-----hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc-------------
Q psy6409 1643 VGKPTERIEQIV------YILS-----EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------- 1698 (1832)
Q Consensus 1643 ~~~~~~~i~q~~------~~~~-----~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~------------- 1698 (1832)
...+.. +...+ .... .......+.+.+. ..+++||||++++.|+.++..|...
T Consensus 197 ~~rp~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 273 (720)
T 2zj8_A 197 DWRPVK-LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRAL 273 (720)
T ss_dssp CCCSSE-EEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CCCCCc-ceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 112221 11111 1111 1233444555554 4589999999999999999998753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC---
Q psy6409 1699 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1751 (1832)
Q Consensus 1699 --------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d--- 1751 (1832)
..++..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 274 ~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g 353 (720)
T 2zj8_A 274 NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFG 353 (720)
T ss_dssp HHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSS
T ss_pred HHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCC
Confidence 235999999999999999999999999999999999999999999999999 77
Q ss_pred -CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhh----cCCCCCCCh--hhcCCCCCcCCCCccc
Q psy6409 1752 -MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMI----SSPVSTCPP--ELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1752 -~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~----~~~~~~~~~--~L~~h~~a~~~~gti~ 1820 (1832)
.|.+..+|+||+|||||.| ..|.|++++++.+...+ +.+++. +.+ +.+.+ .|.+|..+.+..|++.
T Consensus 354 ~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~--~~~~~~~~~~~i~-s~l~~~~~l~~~ll~~i~~~~~~ 428 (720)
T 2zj8_A 354 MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV--MNHYIFGKPEKLF-SQLSNESNLRSQVLALIATFGYS 428 (720)
T ss_dssp CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHH--HHHHTTSCCCCCC-CCTTCHHHHHHHHHHHHHHSCCC
T ss_pred CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHH--HHHHhcCCCCCcE-eecCchhhHHHHHHHHHHhCCCC
Confidence 5899999999999999987 57999999998873322 222332 221 22222 4777778888777665
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=457.94 Aligned_cols=369 Identities=20% Similarity=0.298 Sum_probs=285.1
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1404 NWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1404 ~~~e~~--L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+|++++ |++.+.+.++..||..|+|+|.++++.+++++|++++||||||||++|.+|++..+.. +.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 477777 9999999999999999999999999999999999999999999999999999976532 56
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++||++|+++||.|+++.++.+ ..+|+++..++|+....... ..+++|+|+|||+|..++.+....++++++||||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred cEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 8999999999999999999655 44689999999988765432 2378999999999999998877778999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++.+++++..+..++..+.. .....|++++|||+++ ...+.. |+..+. + .
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~----------------------~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~--~ 198 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRR----------------------MNKALRVIGLSATAPN-VTEIAE-WLDADY-Y--V 198 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHH----------------------HCTTCEEEEEECCCTT-HHHHHH-HTTCEE-E--E
T ss_pred eeeecCCCCcccHHHHHHHHHHh----------------------cCcCceEEEECCCcCC-HHHHHH-HhCCCc-c--c
Confidence 99999998999999988876631 1245799999999987 344544 444221 1 1
Q ss_pred ccCCCCcceEEEE------EEcchh-------hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc----------
Q psy6409 1642 SVGKPTERIEQIV------YILSEQ-------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------- 1698 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~------~~~~~~-------~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~---------- 1698 (1832)
....+.. +...+ ...... .....+.+.+. ..+++||||++++.|+.++..|...
T Consensus 199 ~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 275 (702)
T 2p6r_A 199 SDWRPVP-LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGL 275 (702)
T ss_dssp CCCCSSC-EEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred CCCCCcc-ceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHH
Confidence 1122221 11111 111111 13444555554 4689999999999999999988753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC---
Q psy6409 1699 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1751 (1832)
Q Consensus 1699 --------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d--- 1751 (1832)
+.++..|||+|++.+|..+++.|++|+++|||||+++++|||+|++.+||+ ||
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCC
Confidence 246889999999999999999999999999999999999999999999999 76
Q ss_pred CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhh----cCCCCCCCh--hhcCCCCCcCCCCcccc
Q psy6409 1752 MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMI----SSPVSTCPP--ELLNHPDAQHKPGTVMV 1821 (1832)
Q Consensus 1752 ~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~----~~~~~~~~~--~L~~h~~a~~~~gti~~ 1821 (1832)
.|.|..+|+||+|||||.| ..|.|++++++.+...+ +.+++. +.+ +.+.+ .|.+|..+.+..|++.+
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~--~~~~l~~~~e~~~-s~l~~~~~l~~~~l~~~~~g~~~~ 430 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA--VKRYIFGEPERIT-SKLGVETHLRFHSLSIICDGYAKT 430 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHH--HHTTTSSCCCCCC-CCCCSHHHHHHHHHHHHHHTSCSS
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHH--HHHHhcCCCCCce-eecCcchhHHHHHHHHHHcCCCCC
Confidence 7899999999999999987 57999999998873322 122222 221 33333 35557777888887653
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=435.73 Aligned_cols=381 Identities=19% Similarity=0.280 Sum_probs=254.2
Q ss_pred hhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHHcCCcEEE
Q psy6409 696 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK-----IGYAEPTPIQRQAIPIGLQNRDIIG 770 (1832)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~-----~g~~~pt~iQ~~ai~~il~grdvIv 770 (1832)
++.+..+++++++.....|...+..+. ++++ +.++....+.+ +|. .|+|+|..++|.+++|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~--~lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLEN--LIPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhh--hhHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 345566777776655555544443322 1222 12233333323 575 99999999999999998 99
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~ 850 (1832)
.++||||||++|+||++.... .++.++||+||++||.|++..+..++..+|+++++++||.+....
T Consensus 93 em~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r-- 158 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK-- 158 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--
T ss_pred eecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--
Confidence 999999999999999985431 356799999999999999999999999999999999999986433
Q ss_pred HHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCC---------------ChHHHHHHHHhC
Q psy6409 851 RLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYM 907 (1832)
Q Consensus 851 ~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~g---------------f~~~i~~Il~~l 907 (1832)
.+..+++|+|||||+| .|+|..+. +.+..+.++||||||+|+ |.+ |...+..|+..+
T Consensus 159 ~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L 238 (853)
T 2fsf_A 159 REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHL 238 (853)
T ss_dssp HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------
T ss_pred HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhc
Confidence 4445799999999999 78887543 577899999999999999 654 566788888777
Q ss_pred CCCCCC-CCCchhHHHHHHHHhhccccccceE------------------------EEEEecCChHHHHH-----HHHhc
Q psy6409 908 PVTNLK-PDTEDAEDENKLLANYNSKKKYRQT------------------------VMFTATMPPAVERL-----ARSYL 957 (1832)
Q Consensus 908 ~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~q~------------------------v~~SATl~~~v~~~-----~~~~l 957 (1832)
+..... ....... ..+.-..+.+|+ .+||||+|..+..+ +..++
T Consensus 239 ~~~~~~~~~~~~~~------~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~ 312 (853)
T 2fsf_A 239 IRQEKEDSETFQGE------GHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALF 312 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcccccccccc------ccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHh
Confidence 521000 0000000 000000011121 27888875422211 11111
Q ss_pred C--------CCc-----------------------------EEEEc----------------------------------
Q psy6409 958 R--------RPA-----------------------------TVYIG---------------------------------- 966 (1832)
Q Consensus 958 ~--------~p~-----------------------------~v~~~---------------------------------- 966 (1832)
. ++. .+.+.
T Consensus 313 ~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~e 392 (853)
T 2fsf_A 313 TRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFE 392 (853)
T ss_dssp --------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHH
T ss_pred hcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHH
Confidence 0 110 01111
Q ss_pred ------------ccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEc
Q psy6409 967 ------------SVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 967 ------------~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lh 1031 (1832)
+...+.....+ .+.++....|...+...+.. ..+.|+||||+|+..++.|+..|...|+++.++|
T Consensus 393 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLn 472 (853)
T 2fsf_A 393 FSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 472 (853)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECC
T ss_pred HHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 11111111111 13456778899888887754 3567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc-------------------------------------CEEEE
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------SMVIN 1074 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v-------------------------------------~~VI~ 1074 (1832)
|++.+.++..+.+.|+.| .|+||||+|+||+||+.. .+||+
T Consensus 473 ak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~ 550 (853)
T 2fsf_A 473 AKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG 550 (853)
T ss_dssp TTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE
Confidence 999999999999999998 699999999999999974 69999
Q ss_pred cCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1075 YDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1075 ~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|+.|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 551 te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 551 TERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred ccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 99999999999999999999999999999998873
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=462.79 Aligned_cols=330 Identities=19% Similarity=0.246 Sum_probs=266.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..|..+++++.+...+...++..|+|+|.++|+.++.|+++|++||||||||++|++|++..+. .+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~r 229 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQR 229 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTCE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCCe
Confidence 3566677777776666666777899999999999999999999999999999999999998763 3678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+||++||++|+.|++..+.+++. .+..++|+.+.. .+++|+|+||++|.+++.++...+.++++|||||
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 99999999999999999999864 477788887743 4689999999999999998888889999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH--HHHHHhcCCCcEEEE
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE--RLARSYLRRPATVYI 1640 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~--~~~~~~l~~p~~v~i 1640 (1832)
||+|.+++|+..+..++..++ ..+|+++||||+|+..+ .+...+...|..+..
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~-------------------------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~ 353 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLP-------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSC-------------------------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEE
T ss_pred hhhccccchHHHHHHHHHhcC-------------------------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 999999999999999998886 34799999999987643 444455555555443
Q ss_pred cccCCCCcceEEEEEEcc---------h----------------------------------------------hhHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILS---------E----------------------------------------------QDKRKK 1665 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~---------~----------------------------------------------~~k~~~ 1665 (1832)
... .+. .+.+++.... . ..+...
T Consensus 354 ~~~-rp~-pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (1108)
T 3l9o_A 354 TNF-RPT-PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYK 431 (1108)
T ss_dssp ECC-CSS-CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHH
T ss_pred cCC-Ccc-cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHH
Confidence 322 121 1222221110 0 223334
Q ss_pred HHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCC---------------------------------------cEEEEc
Q psy6409 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY---------------------------------------NACTLH 1706 (1832)
Q Consensus 1666 l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~---------------------------------------~v~~lH 1706 (1832)
++..+......++||||+++..|+.++..|...++ ++..||
T Consensus 432 li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~H 511 (1108)
T 3l9o_A 432 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 511 (1108)
T ss_dssp HHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEEC
T ss_pred HHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeec
Confidence 55555556677999999999999999998864322 289999
Q ss_pred CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC--------CCCHHHHHHHhcccccCC--CccEEE
Q psy6409 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AKSIEDYTHRIGRTGRAG--KEGLAV 1776 (1832)
Q Consensus 1707 g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~--------P~s~~~yiQRiGRaGR~g--~~G~ai 1776 (1832)
|+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|+
T Consensus 512 g~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~i 591 (1108)
T 3l9o_A 512 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 591 (1108)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999997665 448889999999999999 679999
Q ss_pred EEeeCC
Q psy6409 1777 SFCTKD 1782 (1832)
Q Consensus 1777 ~~~~~~ 1782 (1832)
+++++.
T Consensus 592 ll~~~~ 597 (1108)
T 3l9o_A 592 MMIDEK 597 (1108)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 988876
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=459.22 Aligned_cols=332 Identities=20% Similarity=0.290 Sum_probs=267.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
..|| +|||+|.++||.++.|+|+|++||||||||++|++|++..+ ..++++|||+||++||.|++..
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHHHHHHHH
Confidence 4688 69999999999999999999999999999998888887654 2478999999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCch---HHHHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchh----------
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR---------- 890 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~---~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~---------- 890 (1832)
+..++ ..+++++.++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99987 789999999999987 6666677766 99999999999988875 6788999999999975
Q ss_pred hhc-CCChHH-HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec-CChHHH-HHHHHhcCCCcEEEEc
Q psy6409 891 MID-MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVE-RLARSYLRRPATVYIG 966 (1832)
Q Consensus 891 l~d-~gf~~~-i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT-l~~~v~-~~~~~~l~~p~~v~~~ 966 (1832)
|++ +||.+. +..++..++..... .. .......|+++|||| .|..+. .+...++. +.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~-------------~~-~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~ 279 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIY-------------ER-PKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG 279 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCC-------------CC-CSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC
T ss_pred hhHhcCCCHHHHHHHHHhcccchhh-------------hh-hccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec
Confidence 455 899988 88888776410000 00 011145899999999 565544 23333332 3333
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEE-EEcCCCCHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~-~lhg~~~~~~R~~il~~ 1045 (1832)
........+.+.+..+ .+...|.+++.. .++++||||+++..|+.++..|...|+.+. .+|| +|.. ++.
T Consensus 280 ~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~ 349 (1104)
T 4ddu_A 280 RLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FED 349 (1104)
T ss_dssp BCCCCCCCEEEEEESC---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHH
T ss_pred cCCCCcCCceeEEEec---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHH
Confidence 4444556677776655 345556666665 348899999999999999999999999998 9999 2555 999
Q ss_pred HhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCCC-----------------------------------------
Q psy6409 1046 LKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK----------------------------------------- 1079 (1832)
Q Consensus 1046 F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p~----------------------------------------- 1079 (1832)
|++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 350 F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~ 429 (1104)
T 4ddu_A 350 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAK 429 (1104)
T ss_dssp HHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHH
T ss_pred HHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999 99999999998
Q ss_pred -------------------------------CHhHHHHHhcccccCCCCc--EEEEEecCCCchHHHHHHHHHh
Q psy6409 1080 -------------------------------SIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1080 -------------------------------s~~~yvQr~GRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
++.+|+||+|||||.|..| .+++++..+|...++.|.+.+.
T Consensus 430 ~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 430 EHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999976543 4555555688899999988775
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=435.58 Aligned_cols=334 Identities=19% Similarity=0.254 Sum_probs=206.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998775421 1237789999999999999999999
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+..+++|||||||++.++++ +..++.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~ 153 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMT 153 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHH
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHH
Confidence 9988889999999999987776667777899999999999999988877 799999999999999987763 222221
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-----------HHHHHHH------------------Hh
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLAR------------------SY 956 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-----------~v~~~~~------------------~~ 956 (1832)
.+. ...........+++++|||++. .+..+.. .+
T Consensus 154 ~~~-----------------~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~ 216 (556)
T 4a2p_A 154 RYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRF 216 (556)
T ss_dssp HHH-----------------HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHH
T ss_pred HHH-----------------HhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhc
Confidence 110 1111112345789999999853 1111111 12
Q ss_pred cCCCcEEEEcccCCCCcceE---------------------EEE------E-------Ec--------------------
Q psy6409 957 LRRPATVYIGSVGKPTERIE---------------------QIV------Y-------IL-------------------- 982 (1832)
Q Consensus 957 l~~p~~v~~~~~~~~~~~i~---------------------q~~------~-------~~-------------------- 982 (1832)
...|................ ... . ++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (556)
T 4a2p_A 217 MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 296 (556)
T ss_dssp TCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred CCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHH
Confidence 22222222111100000000 000 0 00
Q ss_pred ------------------------------------------------------------------------chhhHHHH
Q psy6409 983 ------------------------------------------------------------------------SEQDKRKK 990 (1832)
Q Consensus 983 ------------------------------------------------------------------------~~~~k~~~ 990 (1832)
....|...
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~ 376 (556)
T 4a2p_A 297 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEE 376 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHH
Confidence 01345666
Q ss_pred HHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHhC-CCCcE
Q psy6409 991 LMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSKDI 1053 (1832)
Q Consensus 991 L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~------------g~~v~~lhg~~~~~~R~~il~~F~~-G~~~V 1053 (1832)
|.+++.. ..+.++||||+++..++.+++.|... |.....+||+|++.+|..+++.|++ |.++|
T Consensus 377 L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 456 (556)
T 4a2p_A 377 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 456 (556)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCE
T ss_pred HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEE
Confidence 6666654 46789999999999999999999775 5666777889999999999999999 99999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999999999999999999999999999 998 67999999998754
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=449.84 Aligned_cols=348 Identities=21% Similarity=0.247 Sum_probs=227.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
..++..+||..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 3567788999999999999999999999999999999999999999998775421 123478999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChH
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEP 898 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~ 898 (1832)
|+.+.+.+++...++++..++||.....+...+..+++|+|+|||+|.+.+..+.+ .+..+++|||||||++.+..
T Consensus 76 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~--- 152 (696)
T 2ykg_A 76 QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH--- 152 (696)
T ss_dssp HHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---
T ss_pred HHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---
Confidence 99999999998889999999999876666666667899999999999999988776 78999999999999988543
Q ss_pred HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC--------hHHHHHHHH---------------
Q psy6409 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP--------PAVERLARS--------------- 955 (1832)
Q Consensus 899 ~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~--------~~v~~~~~~--------------- 955 (1832)
.+..++..+- . ...........+++++|||+. ..+..+...
T Consensus 153 ~~~~i~~~~l--------------~--~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 216 (696)
T 2ykg_A 153 PYNMIMFNYL--------------D--QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHN 216 (696)
T ss_dssp HHHHHHHHHH--------------H--HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTT
T ss_pred cHHHHHHHHH--------------H--HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccc
Confidence 2232221110 0 000011124468999999986 111211111
Q ss_pred ------hcCCCcEEEEcccCCCC---------------------------------------------------------
Q psy6409 956 ------YLRRPATVYIGSVGKPT--------------------------------------------------------- 972 (1832)
Q Consensus 956 ------~l~~p~~v~~~~~~~~~--------------------------------------------------------- 972 (1832)
+...|............
T Consensus 217 ~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (696)
T 2ykg_A 217 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 296 (696)
T ss_dssp HHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC---
T ss_pred hHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhc
Confidence 11222221110000000
Q ss_pred ------------------------------------------------------cceEEEEEE----------------c
Q psy6409 973 ------------------------------------------------------ERIEQIVYI----------------L 982 (1832)
Q Consensus 973 ------------------------------------------------------~~i~q~~~~----------------~ 982 (1832)
..+.+.+.. .
T Consensus 297 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 376 (696)
T 2ykg_A 297 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 376 (696)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000000000 0
Q ss_pred chhhHHHHHHHHHHcC----CCCCEEEEEcccchHHHHHHHHHHcC----CcEEEE--------cCCCCHHHHHHHHHHH
Q psy6409 983 SEQDKRKKLMEVLNRG----VKKPVIIFVNQKKGADVLAKGLEKLG----YNACTL--------HGGKGQEQRELALNSL 1046 (1832)
Q Consensus 983 ~~~~k~~~L~~~l~~~----~~~~vIVFv~s~~~~~~l~~~L~~~g----~~v~~l--------hg~~~~~~R~~il~~F 1046 (1832)
....|...|.+++... .+.++||||+++..|+.+++.|...+ +.+..+ ||+|++.+|..+++.|
T Consensus 377 ~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 377 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp GCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 1345677777777654 56789999999999999999999988 888888 5699999999999999
Q ss_pred hC-CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1047 KG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1047 ~~-G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
++ |.++|||||+++++|||+|+|++||+||+|.++.+|+||+|| ||. ..|.+++|++.++......+
T Consensus 457 ~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 457 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred HhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 98 999999999999999999999999999999999999999999 998 67999999998775444433
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=451.35 Aligned_cols=332 Identities=20% Similarity=0.288 Sum_probs=264.6
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+|| .|+|+|.++++.++.|+|++++||||||||++|++|++..+ ..++++|||+||++||.|+++.
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHHHHHHHH
Confidence 4688 69999999999999999999999999999998888887654 2478899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcch---HHHHHHhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEccchhh---------
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM--------- 1566 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~---~~~~~~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l--------- 1566 (1832)
+++++ ..+++++.++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99987 778999999999987 5566667666 99999999999888774 67889999999999754
Q ss_pred -hc-CCChHH-HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc-CChHHHH-HHHHhcCCCcEEEEc
Q psy6409 1567 -ID-MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVER-LARSYLRRPATVYIG 1641 (1832)
Q Consensus 1567 -l~-~gf~~~-l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT-l~~~~~~-~~~~~l~~p~~v~i~ 1641 (1832)
++ +||.+. +..++..++...... ........|+++|||| .|..+.. +...++. +.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~--------------~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~ 279 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYE--------------RPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG 279 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCC--------------CCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhh--------------hhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec
Confidence 45 888888 788887664100000 0011145799999999 5655442 2333332 2333
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEE-EEcCCCCHHHHHHHHHH
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~-~lHg~ls~~~R~~il~~ 1720 (1832)
........+.+.+..+ .+...|..++.. ...++||||+++..|+.++..|...|+.+. .+|| +|.. ++.
T Consensus 280 ~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~ 349 (1104)
T 4ddu_A 280 RLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FED 349 (1104)
T ss_dssp BCCCCCCCEEEEEESC---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHH
T ss_pred cCCCCcCCceeEEEec---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHH
Confidence 3344455666766555 455666777766 348999999999999999999999999998 9999 2555 999
Q ss_pred hhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCCC-----------------------------------------
Q psy6409 1721 LKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK----------------------------------------- 1754 (1832)
Q Consensus 1721 F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P~----------------------------------------- 1754 (1832)
|++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 350 F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~ 429 (1104)
T 4ddu_A 350 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAK 429 (1104)
T ss_dssp HHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHH
T ss_pred HHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999 99999999998
Q ss_pred -------------------------------CHHHHHHHhcccccCCCcc--EEEEEeeCCChhHHHHHHHHhh
Q psy6409 1755 -------------------------------SIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1755 -------------------------------s~~~yiQRiGRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++.+|+||+|||||.|..| .+++++..+|...+..|.+.+.
T Consensus 430 ~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 430 EHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 8889999999999965432 3455555588888988887764
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=441.64 Aligned_cols=312 Identities=20% Similarity=0.276 Sum_probs=256.8
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 744 ~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
..++|. |+|+|.+||+.+..|+++|++||||||||++|.+|++..+. .+.++||++||++|+.|++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHH
Confidence 346775 99999999999999999999999999999999999987652 36799999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
.+.+++. .++.++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.+++++..+..+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998754 678888987643 35899999999999999888778999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHH---hcCCCcEEEEcccCCCCcceEEEEE
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS---YLRRPATVYIGSVGKPTERIEQIVY 980 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~---~l~~p~~v~~~~~~~~~~~i~q~~~ 980 (1832)
+..++ ...|++++|||+|+..+ ++.. ....|..+....... ..+.+.++
T Consensus 217 l~~l~-------------------------~~~~il~LSATi~n~~e-~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~ 268 (1010)
T 2xgj_A 217 IILLP-------------------------DKVRYVFLSATIPNAME-FAEWICKIHSQPCHIVYTNFRP--TPLQHYLF 268 (1010)
T ss_dssp HHHSC-------------------------TTCEEEEEECCCTTHHH-HHHHHHHHHTSCEEEEEECCCS--SCEEEEEE
T ss_pred HHhcC-------------------------CCCeEEEEcCCCCCHHH-HHHHHHhhcCCCeEEEecCCCc--ccceEEEE
Confidence 88775 24799999999987543 3333 335565555443222 22333332
Q ss_pred Ecc---------h----------------------------------------------hhHHHHHHHHHHcCCCCCEEE
Q psy6409 981 ILS---------E----------------------------------------------QDKRKKLMEVLNRGVKKPVII 1005 (1832)
Q Consensus 981 ~~~---------~----------------------------------------------~~k~~~L~~~l~~~~~~~vIV 1005 (1832)
... . ......++..+......++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IV 348 (1010)
T 2xgj_A 269 PAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIV 348 (1010)
T ss_dssp ETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEE
T ss_pred ecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEE
Confidence 210 0 112334555555556678999
Q ss_pred EEcccchHHHHHHHHHHcCC---------------------------------------cEEEEcCCCCHHHHHHHHHHH
Q psy6409 1006 FVNQKKGADVLAKGLEKLGY---------------------------------------NACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~g~---------------------------------------~v~~lhg~~~~~~R~~il~~F 1046 (1832)
||+++..|+.++..|...++ ++.++||+|++.+|..+++.|
T Consensus 349 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F 428 (1010)
T 2xgj_A 349 FSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 428 (1010)
T ss_dssp EESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHH
Confidence 99999999999999876443 388999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEE----cCC----CCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVIN----YDM----AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d~----p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.|.+ |.|++|+++.
T Consensus 429 ~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 429 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred hcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999999999999999 999 88999999999999999974 9999999976
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=463.14 Aligned_cols=335 Identities=21% Similarity=0.273 Sum_probs=268.8
Q ss_pred HHHH-HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIE-KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~-~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.+. .+||. | |+|.++||.++.|+|+|++||||||||+ |++|++..+.. .++++|||+||++||.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVI 113 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHHH
Confidence 4343 48999 9 9999999999999999999999999998 99999876532 4689999999999999
Q ss_pred HHHHHHHHhcCCCCC----eEEEEEcCCchHHH---HHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 820 QIEEETNKFGTPLGI----RTVLVVGGLSREEQ---GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i----~v~~~~Gg~~~~~~---~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|+++.+++++..+++ +++.++||.+...+ ...+.. ++|+|+|||+|.+++.+ ++.+++|||||||+|+
T Consensus 114 Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 114 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhh
Confidence 999999999988888 89999999987663 334455 99999999999987765 6799999999999999
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 972 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~ 972 (1832)
+ |+..+..++..+........ .......|+++||||+++. ..++..++.++..+.+.......
T Consensus 189 ~--~~~~~~~i~~~lgf~~~~~~--------------~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~ 251 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYDLKT--------------KSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITV 251 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEETTT--------------TEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECC
T ss_pred h--ccccHHHHHHHhCcchhhhh--------------hhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCc
Confidence 8 67899999887742110000 1112457899999999887 54444444444434444333344
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
..+.+.+. ...+...|.+++... +.++||||+++..|+.+++.|... +.+..+||++ ..+++.|++|+++
T Consensus 252 ~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~ 321 (1054)
T 1gku_B 252 RNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEID 321 (1054)
T ss_dssp CCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCS
T ss_pred CCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCc
Confidence 55666544 345566677777654 578999999999999999999988 9999999998 4789999999999
Q ss_pred EEEe----cccccccCCCcCc-CEEEEcCCC-------------------------------------------------
Q psy6409 1053 ILVA----TDVAGRGIDIKDV-SMVINYDMA------------------------------------------------- 1078 (1832)
Q Consensus 1053 VLVa----Tdv~~rGlDip~v-~~VI~~d~p------------------------------------------------- 1078 (1832)
|||| |+++++|||+|+| ++||+||+|
T Consensus 322 VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1054)
T 1gku_B 322 HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILK 401 (1054)
T ss_dssp EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHH
T ss_pred EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999996 999999999
Q ss_pred ----------------------CCHhHHHHHhcccccCCCCc--EEEEEecCCCchHHHHHHHHHhc
Q psy6409 1079 ----------------------KSIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1079 ----------------------~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
.+..+|+||+|||||.|..| .+++|+..+|..++..|.+.+..
T Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 402 KVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988876 49999999999999999888765
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=425.68 Aligned_cols=338 Identities=21% Similarity=0.259 Sum_probs=233.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
-+|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...+.++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999998875422 133778999999999999999999999
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
+...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+..+++|||||||++.+.+. +..++..+
T Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~ 152 (555)
T 3tbk_A 76 FERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRY 152 (555)
T ss_dssp HHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHH
T ss_pred hccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHH
Confidence 88889999999999987777667777899999999999999988777 789999999999999987652 33332211
Q ss_pred CCCCCCCCCchhHHHHHHHHh-hccccccceEEEEEecCChH--------HHH---HHHH------------------hc
Q psy6409 908 PVTNLKPDTEDAEDENKLLAN-YNSKKKYRQTVMFTATMPPA--------VER---LARS------------------YL 957 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~q~v~~SATl~~~--------v~~---~~~~------------------~l 957 (1832)
. ... ........+++++|||++.. ... +... +.
T Consensus 153 ~-----------------~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 215 (555)
T 3tbk_A 153 L-----------------DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVV 215 (555)
T ss_dssp H-----------------HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTC
T ss_pred H-----------------HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhc
Confidence 0 000 01112457999999998542 111 1111 11
Q ss_pred CCCcEEEEcccCCCCcceEE--------------------------------------EE--------------------
Q psy6409 958 RRPATVYIGSVGKPTERIEQ--------------------------------------IV-------------------- 979 (1832)
Q Consensus 958 ~~p~~v~~~~~~~~~~~i~q--------------------------------------~~-------------------- 979 (1832)
..|................. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (555)
T 3tbk_A 216 YKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESR 295 (555)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHH
T ss_pred CCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHH
Confidence 11111111000000000000 00
Q ss_pred ---------------------------------------------------------------------EEcchhhHHHH
Q psy6409 980 ---------------------------------------------------------------------YILSEQDKRKK 990 (1832)
Q Consensus 980 ---------------------------------------------------------------------~~~~~~~k~~~ 990 (1832)
.......|...
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 375 (555)
T 3tbk_A 296 VCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRD 375 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHH
Confidence 00001345566
Q ss_pred HHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHcC------------CcEEEEcCCCCHHHHHHHHHHHhC-CCCcE
Q psy6409 991 LMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKLG------------YNACTLHGGKGQEQRELALNSLKG-GSKDI 1053 (1832)
Q Consensus 991 L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~g------------~~v~~lhg~~~~~~R~~il~~F~~-G~~~V 1053 (1832)
|.+++.. ....++||||+++..++.++..|...+ .....+||+|++.+|..+++.|++ |.++|
T Consensus 376 l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 455 (555)
T 3tbk_A 376 LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI 455 (555)
T ss_dssp HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSE
T ss_pred HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeE
Confidence 6666654 456899999999999999999998863 345566779999999999999999 99999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|+++++......+
T Consensus 456 LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 456 LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 998 78999999998865444443
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=435.29 Aligned_cols=320 Identities=20% Similarity=0.274 Sum_probs=258.9
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1419 ~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
..++|. |+|+|.++++.+..|++++++||||||||++|++|++..+. .+.++||++||++|+.|++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHH
Confidence 456774 99999999999999999999999999999999999987653 36789999999999999999
Q ss_pred HHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
.+.+++. .+..++|+.... .+++|+|+||++|.+++.++...+.++++|||||||+|.+++++..++.+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998764 577888987754 25899999999999999888888999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH--HHHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE--RLARSYLRRPATVYIGSVGKPTERIEQIVYI 1656 (1832)
Q Consensus 1579 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~--~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~ 1656 (1832)
+..++ ...|++++|||+|+..+ ..+......+..+.... ..+. .+.+++..
T Consensus 217 l~~l~-------------------------~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~-~rp~-pl~~~~~~ 269 (1010)
T 2xgj_A 217 IILLP-------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-FRPT-PLQHYLFP 269 (1010)
T ss_dssp HHHSC-------------------------TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC-CCSS-CEEEEEEE
T ss_pred HHhcC-------------------------CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-CCcc-cceEEEEe
Confidence 88775 34799999999988643 22222334455444332 2222 23333322
Q ss_pred cc---------h----------------------------------------------hhHHHHHHHHHHhCCCCcEEEE
Q psy6409 1657 LS---------E----------------------------------------------QDKRKKLMEVLNRGVKKPVIIF 1681 (1832)
Q Consensus 1657 ~~---------~----------------------------------------------~~k~~~l~~~l~~~~~~~vIVF 1681 (1832)
.. . ......++..+......++|||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF 349 (1010)
T 2xgj_A 270 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 349 (1010)
T ss_dssp TTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 10 0 1112334445544556699999
Q ss_pred ECchhHHHHHHHHHHHcCC---------------------------------------cEEEEcCCCCHHHHHHHHHHhh
Q psy6409 1682 VNQKKGADVLAKGLEKLGY---------------------------------------NACTLHGGKGQEQRELALNSLK 1722 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~~---------------------------------------~v~~lHg~ls~~~R~~il~~F~ 1722 (1832)
|+++..|+.++..|...++ +++.|||+|++.+|..+++.|+
T Consensus 350 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~ 429 (1010)
T 2xgj_A 350 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 429 (1010)
T ss_dssp ESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHh
Confidence 9999999999998876443 3899999999999999999999
Q ss_pred CCCCcEEEEcccccccCCCCCCCEEEE----eCC----CCCHHHHHHHhcccccCCC--ccEEEEEeeCC-ChhHHHH
Q psy6409 1723 GGSKDILVATDVAGRGIDIKDVSMVIN----YDM----AKSIEDYTHRIGRTGRAGK--EGLAVSFCTKD-DSHLFYD 1789 (1832)
Q Consensus 1723 ~g~~~VLVATdvl~~GIDip~v~~VI~----~d~----P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~-d~~~~~~ 1789 (1832)
+|.++|||||+++++|||+|++++||+ ||. |.|+.+|+||+|||||.|. .|.|++|+++. +...+..
T Consensus 430 ~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 430 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp TTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred cCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 999999999999999999999999999 999 8899999999999999986 59999999876 4444433
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=427.81 Aligned_cols=334 Identities=19% Similarity=0.257 Sum_probs=205.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
+...|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999998876532 1237789999999999999999999
Q ss_pred HhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1502 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1502 ~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.++++ +..++.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~ 153 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMT 153 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHH
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHH
Confidence 9988889999999999987766666667899999999999999988877 799999999999999987763 222221
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH-----------HHHHHH------------------Hh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-----------VERLAR------------------SY 1631 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~-----------~~~~~~------------------~~ 1631 (1832)
.+ +...........+++++|||++.. +..++. .+
T Consensus 154 ~~-----------------~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~ 216 (556)
T 4a2p_A 154 RY-----------------LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRF 216 (556)
T ss_dssp HH-----------------HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHH
T ss_pred HH-----------------HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhc
Confidence 11 001111123457899999999531 111111 12
Q ss_pred cCCCcEEEEcccCCCCcce---------------------EEEEE-------------Ec--------------------
Q psy6409 1632 LRRPATVYIGSVGKPTERI---------------------EQIVY-------------IL-------------------- 1657 (1832)
Q Consensus 1632 l~~p~~v~i~~~~~~~~~i---------------------~q~~~-------------~~-------------------- 1657 (1832)
...|....+.......... ..... ++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (556)
T 4a2p_A 217 MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 296 (556)
T ss_dssp TCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred CCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHH
Confidence 2222222111110000000 00000 00
Q ss_pred ------------------------------------------------------------------------chhhHHHH
Q psy6409 1658 ------------------------------------------------------------------------SEQDKRKK 1665 (1832)
Q Consensus 1658 ------------------------------------------------------------------------~~~~k~~~ 1665 (1832)
....|...
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~ 376 (556)
T 4a2p_A 297 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEE 376 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHH
Confidence 01335555
Q ss_pred HHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHhhC-CCCcE
Q psy6409 1666 LMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSKDI 1728 (1832)
Q Consensus 1666 l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~------------~~~v~~lHg~ls~~~R~~il~~F~~-g~~~V 1728 (1832)
|.+++.. ....++||||+++.+++.++..|... |.+...+||+|++.+|..+++.|++ |+++|
T Consensus 377 L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 456 (556)
T 4a2p_A 377 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 456 (556)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCE
T ss_pred HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEE
Confidence 6666643 46789999999999999999999775 5666777889999999999999999 99999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999999999999999999999999999 998 78999999998754
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=411.24 Aligned_cols=343 Identities=21% Similarity=0.265 Sum_probs=268.7
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+|+ .|+|+|..++|.+++|+ |+.++||+|||++|+||++...+ .|..++||+||++||.|++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------~g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------AGNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------TTSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------hCCCeEEEeCCHHHHHHHHHH
Confidence 3799 99999999999999998 99999999999999999975432 256799999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHcc------ccccCCceeEEEecchhhh-cC--
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DM-- 894 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~------~~~l~~~~~lViDEaH~l~-d~-- 894 (1832)
+..+...+|+++++++||.+.... .+..+++|+||||++| .|+|..+ .+.+..+.++||||||+|+ |.
T Consensus 172 m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 172 MGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 999999999999999999986544 3344799999999999 7888654 3577899999999999998 43
Q ss_pred -------------CChHHHHHHHHhCCCC---------C--------------------CCCCCch--hHHHHHHHHh--
Q psy6409 895 -------------GFEPDVQKILEYMPVT---------N--------------------LKPDTED--AEDENKLLAN-- 928 (1832)
Q Consensus 895 -------------gf~~~i~~Il~~l~~~---------~--------------------~~~~~~~--~~~~~~ll~~-- 928 (1832)
+|...+..|+..++.. . +...+.. .......+..
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 5778999999988620 0 0000000 0000000000
Q ss_pred --------------------------------------------hc---------------cccccceEEEEEecCChHH
Q psy6409 929 --------------------------------------------YN---------------SKKKYRQTVMFTATMPPAV 949 (1832)
Q Consensus 929 --------------------------------------------~~---------------~~~~~~q~v~~SATl~~~v 949 (1832)
+. -...+..+.++|+|.....
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 00 0012345677888887766
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCc
Q psy6409 950 ERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026 (1832)
Q Consensus 950 ~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~ 1026 (1832)
..|...|--+ .+.+ +...+.....+ .+.+.....|...+...+.. ..+.|+||||+|+..++.|+..|...|++
T Consensus 410 ~Ef~~iY~l~--vv~I-Ptn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 410 AELHEIYKLG--VVSI-PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp HHHHHHHCCE--EEEC-CCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC--eEEe-CCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 6666666322 2222 33444444433 24556778899888887754 25678999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc-------------------------------------
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV------------------------------------- 1069 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v------------------------------------- 1069 (1832)
+.++||++.+.++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888888888889888 699999999999999975
Q ss_pred ---------------CEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1070 ---------------SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1070 ---------------~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999999874
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=417.97 Aligned_cols=378 Identities=19% Similarity=0.268 Sum_probs=257.4
Q ss_pred hhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHhcCCcEEEE
Q psy6409 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK-----IGYAEPTPIQRQAIPIGLQNRDIIGV 1446 (1832)
Q Consensus 1372 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~-----~g~~~ptpiQ~~ai~~il~g~dvii~ 1446 (1832)
..+..++++++......|...+..+. ++++ +.++.+..+.+ +|. .|+|+|..++|.++.|+ |+.
T Consensus 25 ~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~--~lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iae 93 (853)
T 2fsf_A 25 PEMEKLSDEELKGKTAEFRARLEKGE------VLEN--LIPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAE 93 (853)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTC------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEE
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHcCC------Chhh--hhHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eee
Confidence 34556666666555444444333321 1222 23344443333 575 89999999999999998 999
Q ss_pred cCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH
Q psy6409 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 1526 (1832)
Q Consensus 1447 ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~ 1526 (1832)
++||||||++|.+|++.... .++.|+||+||++||.|++.++..++..+|+++++++||.+.... .
T Consensus 94 m~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~ 159 (853)
T 2fsf_A 94 MRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--R 159 (853)
T ss_dssp CCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--H
T ss_pred ecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--H
Confidence 99999999999999985432 356799999999999999999999999999999999999987543 3
Q ss_pred hhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhh-cCC---------------ChHHHHHHHHhCC
Q psy6409 1527 LRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYMP 1583 (1832)
Q Consensus 1527 l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll-~~g---------------f~~~l~~Il~~l~ 1583 (1832)
+..+++|+||||++| .+++..+. +.+..+.++|+||||+|+ +.+ |...+..|+..++
T Consensus 160 ~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 160 EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------------------
T ss_pred HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 445799999999999 78887653 567899999999999998 543 5667778887775
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceE------------------------EEEEccCCh-----------------
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQT------------------------VMFTATMPP----------------- 1622 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~------------------------v~~SATl~~----------------- 1622 (1832)
........ ..... ..+.-..+.+|+ .+||||++.
T Consensus 240 ~~~~~~~~--~~~~~---~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~ 314 (853)
T 2fsf_A 240 RQEKEDSE--TFQGE---GHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTR 314 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccc--ccccc---ccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhc
Confidence 31000000 00000 000000001111 156666543
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q psy6409 1623 --------------------------------------------------------------------------AVERLA 1628 (1832)
Q Consensus 1623 --------------------------------------------------------------------------~~~~~~ 1628 (1832)
....+.
T Consensus 315 d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~ 394 (853)
T 2fsf_A 315 DVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFS 394 (853)
T ss_dssp ------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHH
T ss_pred CccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHH
Confidence 222222
Q ss_pred HHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEE
Q psy6409 1629 RSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705 (1832)
Q Consensus 1629 ~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~l 1705 (1832)
..|.- ..+ +-+...+.....+ .+.++....|...++..+.. ....|+||||+|+..++.|+..|...|+++.++
T Consensus 395 ~iY~l--~vv-~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vL 471 (853)
T 2fsf_A 395 SIYKL--DTV-VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 471 (853)
T ss_dssp HHHCC--EEE-ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEEC
T ss_pred HHhCC--cEE-EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 22210 011 1122222222222 13456778899899888754 356799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC-------------------------------------CEEE
Q psy6409 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------SMVI 1748 (1832)
Q Consensus 1706 Hg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v-------------------------------------~~VI 1748 (1832)
||.+.+.++..+.+.|+.| .|+|||++++||+||+.. .+||
T Consensus 472 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI 549 (853)
T 2fsf_A 472 NAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII 549 (853)
T ss_dssp CTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE
Confidence 9999999999999999988 699999999999999973 6999
Q ss_pred EeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1749 ~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|+.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 550 ~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 550 GTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred EccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 999999999999999999999999999999998874
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=438.63 Aligned_cols=336 Identities=19% Similarity=0.249 Sum_probs=214.3
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
-+|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999998875421 12377899999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
+++++...++++..++||.....+...+..+++|+|+||++|.+.+.++.+ .+..+++|||||||++.+.+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i 392 (797)
T 4a2q_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (797)
T ss_dssp HHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHH
T ss_pred HHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987777777777899999999999999988777 789999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-----------HHHHHHH------------------
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLAR------------------ 954 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-----------~v~~~~~------------------ 954 (1832)
+..+. ...........+++++|||++. .+..+..
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~ 455 (797)
T 4a2q_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (797)
T ss_dssp HHHHH-----------------HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred HHHHH-----------------HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHH
Confidence 32220 0111112345799999999852 2222221
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEE--E-E-------Ec------------------
Q psy6409 955 SYLRRPATVYIGSVGKPTER------------------------IEQI--V-Y-------IL------------------ 982 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~------------------------i~q~--~-~-------~~------------------ 982 (1832)
.++..|.............. +... . + ++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (797)
T 4a2q_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (797)
T ss_dssp HHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHH
T ss_pred HhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchh
Confidence 12222222111100000000 0000 0 0 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 983 --------------------------------------------------------------------------SEQDKR 988 (1832)
Q Consensus 983 --------------------------------------------------------------------------~~~~k~ 988 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (797)
T 4a2q_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHH
Confidence 013355
Q ss_pred HHHHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHhC-CCC
Q psy6409 989 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1051 (1832)
Q Consensus 989 ~~L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~------------g~~v~~lhg~~~~~~R~~il~~F~~-G~~ 1051 (1832)
..|.++|.. ..+.++||||+++..++.++..|... |.++..+||+|++.+|..+++.|++ |.+
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~ 695 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCc
Confidence 666666654 56689999999999999999999873 5677788999999999999999999 999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp SEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999 998 77999999988753
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=436.35 Aligned_cols=341 Identities=21% Similarity=0.263 Sum_probs=224.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1415 l~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
..++..+||..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 3566788999999999999999999999999999999999999999998775532 123468999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChH
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
|+.+.+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+..
T Consensus 76 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~--- 152 (696)
T 2ykg_A 76 QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH--- 152 (696)
T ss_dssp HHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---
T ss_pred HHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---
Confidence 99999999988889999999999876665566667899999999999999988776 78999999999999987553
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhh-ccccCcceEEEEEccCC--------hHHHHHHHH--------------
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANY-NSKKKYRQTVMFTATMP--------PAVERLARS-------------- 1630 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~q~v~~SATl~--------~~~~~~~~~-------------- 1630 (1832)
.+..++..+- ...+ .......+++++|||+. ..+..+...
T Consensus 153 ~~~~i~~~~l-----------------~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 215 (696)
T 2ykg_A 153 PYNMIMFNYL-----------------DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKH 215 (696)
T ss_dssp HHHHHHHHHH-----------------HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCT
T ss_pred cHHHHHHHHH-----------------HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeeccc
Confidence 2333321110 0000 11124579999999997 112222111
Q ss_pred -------hcCCCcEEEEcccCCCC--------------------------------------------------------
Q psy6409 1631 -------YLRRPATVYIGSVGKPT-------------------------------------------------------- 1647 (1832)
Q Consensus 1631 -------~l~~p~~v~i~~~~~~~-------------------------------------------------------- 1647 (1832)
+...|............
T Consensus 216 ~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (696)
T 2ykg_A 216 NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 295 (696)
T ss_dssp THHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC--
T ss_pred chHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhh
Confidence 11222221111000000
Q ss_pred -------------------------------------------------------cceEEEEEE----------------
Q psy6409 1648 -------------------------------------------------------ERIEQIVYI---------------- 1656 (1832)
Q Consensus 1648 -------------------------------------------------------~~i~q~~~~---------------- 1656 (1832)
..+.+.+..
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (696)
T 2ykg_A 296 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 375 (696)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 000000000
Q ss_pred cchhhHHHHHHHHHHhC----CCCcEEEEECchhHHHHHHHHHHHcC----CcEEEE--------cCCCCHHHHHHHHHH
Q psy6409 1657 LSEQDKRKKLMEVLNRG----VKKPVIIFVNQKKGADVLAKGLEKLG----YNACTL--------HGGKGQEQRELALNS 1720 (1832)
Q Consensus 1657 ~~~~~k~~~l~~~l~~~----~~~~vIVFv~s~~~a~~l~~~L~~~~----~~v~~l--------Hg~ls~~~R~~il~~ 1720 (1832)
.....|...|..++... ...++||||+++.+|+.++..|...+ +.+..+ ||+|++.+|..+++.
T Consensus 376 ~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~ 455 (696)
T 2ykg_A 376 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 455 (696)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHH
Confidence 01234666677777654 56799999999999999999999987 888888 569999999999999
Q ss_pred hhC-CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1721 LKG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1721 F~~-g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|++ |+++|||||+++++|||+|+|++||+||+|.|..+|+||+|| ||. +.|.+++|++..+.
T Consensus 456 F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 456 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp -----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred HHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 998 999999999999999999999999999999999999999999 998 78999999988765
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=449.40 Aligned_cols=332 Identities=20% Similarity=0.271 Sum_probs=265.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1419 ~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
+.+||. | |+|.++|+.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHHHHHHH
Confidence 348999 9 9999999999999999999999999998 88999876543 46789999999999999999
Q ss_pred HHHHhcCCCCC----eEEEEECCcchHHH---HHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCC
Q psy6409 1499 ETNKFGTPLGI----RTVLVVGGLSREEQ---GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF 1571 (1832)
Q Consensus 1499 ~~~~~~~~~g~----~v~~l~gg~~~~~~---~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf 1571 (1832)
.+++++..+++ ++..++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+|++ +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999988888 89999999987663 333445 99999999999987765 67999999999999998 5
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceE
Q psy6409 1572 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIE 1651 (1832)
Q Consensus 1572 ~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~ 1651 (1832)
+..+..++..++....... .......|++++|||++.. ..+...++..+..+.+.........+.
T Consensus 191 ~~~~~~i~~~lgf~~~~~~--------------~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~ 255 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKT--------------KSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVE 255 (1054)
T ss_dssp THHHHHHHHHTTEEEETTT--------------TEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEE
T ss_pred cccHHHHHHHhCcchhhhh--------------hhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCce
Confidence 7888999888753210000 1112457899999999887 533333433333333333333344555
Q ss_pred EEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEE
Q psy6409 1652 QIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731 (1832)
Q Consensus 1652 q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVA 1731 (1832)
+.+. ...+...+..++... ..++||||+++..|+.++..|... +.+..+||++ ..+++.|++|+++||||
T Consensus 256 ~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVa 325 (1054)
T 1gku_B 256 DVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIG 325 (1054)
T ss_dssp EEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEE
T ss_pred EEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEE
Confidence 5544 345666677777655 578999999999999999999988 9999999998 47899999999999999
Q ss_pred ----cccccccCCCCCC-CEEEEeCCC-----------------------------------------------------
Q psy6409 1732 ----TDVAGRGIDIKDV-SMVINYDMA----------------------------------------------------- 1753 (1832)
Q Consensus 1732 ----Tdvl~~GIDip~v-~~VI~~d~P----------------------------------------------------- 1753 (1832)
|+++++|||+|+| ++||+||+|
T Consensus 326 Tas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1054)
T 1gku_B 326 TAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMG 405 (1054)
T ss_dssp ECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHT
T ss_pred ecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999996 999999999
Q ss_pred ------------------CCHHHHHHHhcccccCCCcc--EEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1754 ------------------KSIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1754 ------------------~s~~~yiQRiGRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
.|..+|+||+|||||.|..| .+++|+..+|...+..+.+.+..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 406 KERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 79999999999999987776 48999999999999888887764
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=422.79 Aligned_cols=335 Identities=21% Similarity=0.267 Sum_probs=231.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..+.+++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999998876532 1237789999999999999999999998
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. +..++..+.
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~ 153 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRYL 153 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHHH
Confidence 8889999999999987766666667899999999999999988777 789999999999999987652 233221110
Q ss_pred CCCCCCCCchhhhHHHHHhhh-ccccCcceEEEEEccCChH--------HHH---HHHH------------------hcC
Q psy6409 1584 VTNLKPDTEDAEDENKLLANY-NSKKKYRQTVMFTATMPPA--------VER---LARS------------------YLR 1633 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~q~v~~SATl~~~--------~~~---~~~~------------------~l~ 1633 (1832)
.... .......+++++|||++.. ... +... +..
T Consensus 154 -----------------~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 216 (555)
T 3tbk_A 154 -----------------DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVY 216 (555)
T ss_dssp -----------------HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCC
T ss_pred -----------------HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcC
Confidence 0000 1112457899999999542 111 1111 111
Q ss_pred CCcEEEEcccCCCCcceEE--------------------------------------EE---------------------
Q psy6409 1634 RPATVYIGSVGKPTERIEQ--------------------------------------IV--------------------- 1654 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q--------------------------------------~~--------------------- 1654 (1832)
.|................. ..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (555)
T 3tbk_A 217 KPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRV 296 (555)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHH
T ss_pred CCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHH
Confidence 1111111000000000000 00
Q ss_pred --------------------------------------------------------------------EEcchhhHHHHH
Q psy6409 1655 --------------------------------------------------------------------YILSEQDKRKKL 1666 (1832)
Q Consensus 1655 --------------------------------------------------------------------~~~~~~~k~~~l 1666 (1832)
.......|...+
T Consensus 297 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 376 (555)
T 3tbk_A 297 CKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDL 376 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHH
Confidence 000013355566
Q ss_pred HHHHHh----CCCCcEEEEECchhHHHHHHHHHHHcC------------CcEEEEcCCCCHHHHHHHHHHhhC-CCCcEE
Q psy6409 1667 MEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKLG------------YNACTLHGGKGQEQRELALNSLKG-GSKDIL 1729 (1832)
Q Consensus 1667 ~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~~------------~~v~~lHg~ls~~~R~~il~~F~~-g~~~VL 1729 (1832)
.+++.. ....++||||+++.+++.++..|...+ .+...+||+|++.+|..+++.|++ |+++||
T Consensus 377 ~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 456 (555)
T 3tbk_A 377 YLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNIL 456 (555)
T ss_dssp HHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEE
T ss_pred HHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEE
Confidence 666654 456899999999999999999999863 355566779999999999999999 999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
|||+++++|||+|+|++||+||+|.|+.+|+||+|| ||. +.|.+++|+++.+.....
T Consensus 457 vaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 457 IATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp EECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred EEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 999999999999999999999999999999999999 998 899999999987654433
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=429.82 Aligned_cols=336 Identities=19% Similarity=0.242 Sum_probs=213.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999998876532 12377899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i 392 (797)
T 4a2q_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (797)
T ss_dssp HHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHH
T ss_pred HHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987776666777899999999999999988777 789999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-----------HHHHHH------------------H
Q psy6409 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLA------------------R 1629 (1832)
Q Consensus 1579 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-----------~~~~~~------------------~ 1629 (1832)
+..+. ...........+++++|||++. .+..++ .
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~ 455 (797)
T 4a2q_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (797)
T ss_dssp HHHHH-----------------HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred HHHHH-----------------HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHH
Confidence 32211 0111112355789999999952 222221 1
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEE--EE--------Ec------------------
Q psy6409 1630 SYLRRPATVYIGSVGKPTER------------------------IEQI--VY--------IL------------------ 1657 (1832)
Q Consensus 1630 ~~l~~p~~v~i~~~~~~~~~------------------------i~q~--~~--------~~------------------ 1657 (1832)
.++..|....+......... +... .. ++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (797)
T 4a2q_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (797)
T ss_dssp HHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHH
T ss_pred HhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchh
Confidence 12222222111110000000 0000 00 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 1658 --------------------------------------------------------------------------SEQDKR 1663 (1832)
Q Consensus 1658 --------------------------------------------------------------------------~~~~k~ 1663 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (797)
T 4a2q_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHH
Confidence 012355
Q ss_pred HHHHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHhhC-CCC
Q psy6409 1664 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1726 (1832)
Q Consensus 1664 ~~l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~------------~~~v~~lHg~ls~~~R~~il~~F~~-g~~ 1726 (1832)
..|..++.. ....++||||+++.+++.|+..|... |.++..+||+|++.+|..+++.|++ |++
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~ 695 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCc
Confidence 556666654 56689999999999999999999873 5677788999999999999999999 999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp SEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999 998 88999999988754
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=429.58 Aligned_cols=309 Identities=19% Similarity=0.260 Sum_probs=248.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
++| +|+|+|.++|+.++.|+|+|++||||||||++|++|+...+ ..++++||++|+++|+.|++..+
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~------------~~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH------------RNMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH------------HTTCEEEEEESCGGGHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH------------hcCCeEEEEeCCHHHHHHHHHHH
Confidence 466 48999999999999999999999999999999999998654 24678999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
.++.. ++.+..++|+.... ..++|+|+||++|.+.+.+....+.++++|||||||++.+++|+..+..++.
T Consensus 103 ~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 103 KETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 98753 67899999987643 3589999999999999988877889999999999999999999999999998
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC---CCcEEEEcccCCCCcceEEEEE--
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR---RPATVYIGSVGKPTERIEQIVY-- 980 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~---~p~~v~~~~~~~~~~~i~q~~~-- 980 (1832)
.++ ...|++++|||+|+.. .++..+.. .+..+.... ..+ ..+.+.+.
T Consensus 174 ~l~-------------------------~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~-~r~-~pl~~~v~~~ 225 (997)
T 4a4z_A 174 MLP-------------------------QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTP-KRP-VPLEINIWAK 225 (997)
T ss_dssp HSC-------------------------TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECS-SCS-SCEEEEEEET
T ss_pred hcc-------------------------cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecC-CCC-ccceEEEecC
Confidence 875 2479999999998755 45544321 222222211 111 11111111
Q ss_pred --------------------------------------------------------------------------------
Q psy6409 981 -------------------------------------------------------------------------------- 980 (1832)
Q Consensus 981 -------------------------------------------------------------------------------- 980 (1832)
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~ 305 (997)
T 4a4z_A 226 KELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGA 305 (997)
T ss_dssp TEEEEEECTTCCBCHHHHHHHHHHHC------------------------------------------------------
T ss_pred CcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------EcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCC------------------------
Q psy6409 981 -----------ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY------------------------ 1025 (1832)
Q Consensus 981 -----------~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~------------------------ 1025 (1832)
......+...++..+......++||||++++.|+.++..|...++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 385 (997)
T 4a4z_A 306 IGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKED 385 (997)
T ss_dssp -----------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhh
Confidence 001223456777777777778999999999999999999976555
Q ss_pred ---------------cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC---------CH
Q psy6409 1026 ---------------NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK---------SI 1081 (1832)
Q Consensus 1026 ---------------~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~---------s~ 1081 (1832)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++.+ |+++.|+ |.
T Consensus 386 ~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~ 464 (997)
T 4a4z_A 386 RDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTP 464 (997)
T ss_dssp HTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCH
T ss_pred hcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCH
Confidence 5899999999999999999999999999999999999999999554 5444544 99
Q ss_pred hHHHHHhcccccCC--CCcEEEEEec
Q psy6409 1082 EDYTHRIGRTGRAG--KEGLAVSFCT 1105 (1832)
Q Consensus 1082 ~~yvQr~GRaGR~g--~~G~ai~~~~ 1105 (1832)
.+|+||+|||||.| ..|.|++++.
T Consensus 465 ~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 465 GEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999998 4588888874
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=424.71 Aligned_cols=310 Identities=19% Similarity=0.267 Sum_probs=247.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.++| .|+|+|.++|+.++.|+|++++||||||||++|++|++..+. .+.++||++|+++|+.|+++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------------~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------NMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------------TTCEEEEEESCGGGHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHH
Confidence 3566 589999999999999999999999999999999999986542 367899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+.+++. ++++..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|+..+..++
T Consensus 102 l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 102 FKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp HHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 998753 67888999987643 348999999999999998888888999999999999999999999999999
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc---CCCcEEEEcccCCCCcceEEEEE-
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL---RRPATVYIGSVGKPTERIEQIVY- 1655 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l---~~p~~v~i~~~~~~~~~i~q~~~- 1655 (1832)
..++ ...+++++|||+++..+ +...+. ..+..+ +.....+. .+.+.+.
T Consensus 173 ~~l~-------------------------~~v~iIlLSAT~~n~~e-f~~~l~~~~~~~~~v-i~~~~r~~-pl~~~v~~ 224 (997)
T 4a4z_A 173 IMLP-------------------------QHVKFILLSATVPNTYE-FANWIGRTKQKNIYV-ISTPKRPV-PLEINIWA 224 (997)
T ss_dssp HHSC-------------------------TTCEEEEEECCCTTHHH-HHHHHHHHHTCCEEE-EECSSCSS-CEEEEEEE
T ss_pred Hhcc-------------------------cCCCEEEEcCCCCChHH-HHHHHhcccCCceEE-EecCCCCc-cceEEEec
Confidence 8876 34789999999987753 333222 122222 11111111 1111111
Q ss_pred --------------------------------------------------------------------------------
Q psy6409 1656 -------------------------------------------------------------------------------- 1655 (1832)
Q Consensus 1656 -------------------------------------------------------------------------------- 1655 (1832)
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~ 304 (997)
T 4a4z_A 225 KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAG 304 (997)
T ss_dssp TTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------------------------
T ss_pred CCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ------------EcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCC-----------------------
Q psy6409 1656 ------------ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY----------------------- 1700 (1832)
Q Consensus 1656 ------------~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~----------------------- 1700 (1832)
......+...+...+......++||||++++.|+.++..|...++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 384 (997)
T 4a4z_A 305 AIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKE 384 (997)
T ss_dssp ------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred cccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchh
Confidence 001223455677777777778999999999999999999976555
Q ss_pred ----------------cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC---------CC
Q psy6409 1701 ----------------NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA---------KS 1755 (1832)
Q Consensus 1701 ----------------~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P---------~s 1755 (1832)
++..|||+|++.+|..+++.|++|.++|||||+++++|||+|++. ||+++.| .|
T Consensus 385 d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s 463 (997)
T 4a4z_A 385 DRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELT 463 (997)
T ss_dssp HHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECC
T ss_pred hhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCC
Confidence 689999999999999999999999999999999999999999955 5544444 49
Q ss_pred HHHHHHHhcccccCC--CccEEEEEee
Q psy6409 1756 IEDYTHRIGRTGRAG--KEGLAVSFCT 1780 (1832)
Q Consensus 1756 ~~~yiQRiGRaGR~g--~~G~ai~~~~ 1780 (1832)
..+|+||+|||||.| ..|.+++++.
T Consensus 464 ~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 464 PGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999988 5678888774
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=393.57 Aligned_cols=343 Identities=20% Similarity=0.256 Sum_probs=269.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+|+ .|+|+|..++|.++.|+ |+.++||+|||++|.+|++.... .+..|+||+||++||.|++.+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------~g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------AGNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------TTSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------hCCCeEEEeCCHHHHHHHHHH
Confidence 3798 99999999999999998 99999999999999999975432 256799999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhh-cC--
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DM-- 1569 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll-~~-- 1569 (1832)
+..++..+|+++.+++||.+..... ...+++|+|+||++| .++|..+ .+.+..+.++||||||.|+ +.
T Consensus 172 m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 172 MGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 9999999999999999999865443 334699999999999 7888764 3667899999999999998 43
Q ss_pred -------------CChHHHHHHHHhCCCC---------C-C------------------CCCCchh---hhHH-HHHhh-
Q psy6409 1570 -------------GFEPDVQKILEYMPVT---------N-L------------------KPDTEDA---EDEN-KLLAN- 1603 (1832)
Q Consensus 1570 -------------gf~~~l~~Il~~l~~~---------~-~------------------~~~~~~~---~~~~-~l~~~- 1603 (1832)
+|...+..|+..++.. . . ....... .... .+.+.
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 4778899999988720 0 0 0000000 0000 00000
Q ss_pred --------------------------------------------h---------------ccccCcceEEEEEccCChHH
Q psy6409 1604 --------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAV 1624 (1832)
Q Consensus 1604 --------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~ 1624 (1832)
+ +....+..+.++|+|.....
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 0 00011235678888888777
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCc
Q psy6409 1625 ERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYN 1701 (1832)
Q Consensus 1625 ~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~ 1701 (1832)
..+...|--+ .+ +-+...+.....+ .+.+.....|...++..+.. ....|+||||+|+..++.|+..|...|++
T Consensus 410 ~Ef~~iY~l~--vv-~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 410 AELHEIYKLG--VV-SIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp HHHHHHHCCE--EE-ECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC--eE-EeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 7776666432 23 3344555544433 24456778888888887754 25679999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC-------------------------------------
Q psy6409 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV------------------------------------- 1744 (1832)
Q Consensus 1702 v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v------------------------------------- 1744 (1832)
+.++||.+.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888888888899888 699999999999999975
Q ss_pred ---------------CEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1745 ---------------SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1745 ---------------~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=431.00 Aligned_cols=336 Identities=19% Similarity=0.243 Sum_probs=213.9
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999987653311 12367899999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
+++++...++++..++||.....+...+..+++|+|+||++|.+.+.++.+ .+..+++|||||||++...+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~i 392 (936)
T 4a2w_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (936)
T ss_dssp HHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHHH
T ss_pred HHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987766666667899999999999999988776 788999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-----------HHHHHH------------------H
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLA------------------R 954 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-----------~v~~~~------------------~ 954 (1832)
+..+. ...........+++++|||++. .+..+. .
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~ 455 (936)
T 4a2w_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (936)
T ss_dssp HHHHH-----------------HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred HHHHH-----------------HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHH
Confidence 32221 0011112345789999999852 121111 1
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEEE--E--------Ec------------------
Q psy6409 955 SYLRRPATVYIGSVGKPTER------------------------IEQIV--Y--------IL------------------ 982 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~------------------------i~q~~--~--------~~------------------ 982 (1832)
.++..|.............. +.+.. . ++
T Consensus 456 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~ 535 (936)
T 4a2w_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (936)
T ss_dssp HHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHH
T ss_pred HhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchh
Confidence 22233332221111000000 00000 0 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 983 --------------------------------------------------------------------------SEQDKR 988 (1832)
Q Consensus 983 --------------------------------------------------------------------------~~~~k~ 988 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (936)
T 4a2w_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHH
Confidence 013355
Q ss_pred HHHHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHhC-CCC
Q psy6409 989 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1051 (1832)
Q Consensus 989 ~~L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~------------g~~v~~lhg~~~~~~R~~il~~F~~-G~~ 1051 (1832)
..|.++|.. ..+.++||||+++..++.++..|... |..+..+||+|++.+|..+++.|++ |.+
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~ 695 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCe
Confidence 666667764 35679999999999999999999986 6667778999999999999999999 999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.++.|++..+.
T Consensus 696 ~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999 998 67999999988653
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=388.65 Aligned_cols=318 Identities=24% Similarity=0.296 Sum_probs=246.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
+|+|+|.++++.++.+ ++|+++|||+|||++|+++++..+. ..+.++|||+|+++|+.|+.+.+.+++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-----------~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-----------KYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-----------HSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-----------cCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999999 9999999999999999999987653 246789999999999999999999987
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~ 909 (1832)
...+..+..++|+....... .+...++|+|+||++|.+.+..+.+.+..+++|||||||++.+......+...+..
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~--- 152 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR--- 152 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH---
T ss_pred CcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh---
Confidence 54455888999988765433 33447899999999999999888888999999999999998764333222222221
Q ss_pred CCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH---HHHHhcCCCcEEEEcccCCC-------CcceEEEE
Q psy6409 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER---LARSYLRRPATVYIGSVGKP-------TERIEQIV 979 (1832)
Q Consensus 910 ~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~---~~~~~l~~p~~v~~~~~~~~-------~~~i~q~~ 979 (1832)
.....+++++|||++..... +...+...+ +........ ........
T Consensus 153 ----------------------~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 208 (494)
T 1wp9_A 153 ----------------------QAKNPLVIGLTASPGSTPEKIMEVINNLGIEH--IEYRSENSPDVRPYVKGIRFEWVR 208 (494)
T ss_dssp ----------------------HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCE--EEECCTTSTTTGGGCCCCCEEEEE
T ss_pred ----------------------cCCCCeEEEEecCCCCCcHHHHHHHHhcChhe--eeccCCCcHHHHHhcCCCceeEEe
Confidence 12346899999999744333 332221111 111000000 00000000
Q ss_pred EE------------------------------------------------------------------------------
Q psy6409 980 YI------------------------------------------------------------------------------ 981 (1832)
Q Consensus 980 ~~------------------------------------------------------------------------------ 981 (1832)
..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
T 1wp9_A 209 VDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIEL 288 (494)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------cchhhHHHHHHHHHHc----CCCCCEEEEE
Q psy6409 982 --------------------------------------------------LSEQDKRKKLMEVLNR----GVKKPVIIFV 1007 (1832)
Q Consensus 982 --------------------------------------------------~~~~~k~~~L~~~l~~----~~~~~vIVFv 1007 (1832)
.....|...|.+++.. ..+.++||||
T Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 368 (494)
T 1wp9_A 289 LETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368 (494)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0223456666777765 4678999999
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcC--------CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC
Q psy6409 1008 NQKKGADVLAKGLEKLGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079 (1832)
Q Consensus 1008 ~s~~~~~~l~~~L~~~g~~v~~lhg--------~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~ 1079 (1832)
+++..++.+++.|...|+.+..+|| +|+..+|..+++.|++|.++|||||+++++|||+|++++||+||+|.
T Consensus 369 ~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~ 448 (494)
T 1wp9_A 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP 448 (494)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH
T ss_pred ccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++..|+||+||+||.|. |.++.|+++++
T Consensus 449 ~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 449 SAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp HHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred CHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 99999999999999998 99999999985
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=425.27 Aligned_cols=336 Identities=19% Similarity=0.242 Sum_probs=213.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999987654321 12367899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
+++++...++++..++|+.+...+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++...+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~i 392 (936)
T 4a2w_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (936)
T ss_dssp HHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHHH
T ss_pred HHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987766666666799999999999999988776 788999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-----------HHHHHH------------------H
Q psy6409 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLA------------------R 1629 (1832)
Q Consensus 1579 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-----------~~~~~~------------------~ 1629 (1832)
+..+. ...........+++++|||+.. .+..++ .
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~ 455 (936)
T 4a2w_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (936)
T ss_dssp HHHHH-----------------HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred HHHHH-----------------HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHH
Confidence 32221 0011112355789999999952 111111 1
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEE--EE--------Ec------------------
Q psy6409 1630 SYLRRPATVYIGSVGKPTER------------------------IEQI--VY--------IL------------------ 1657 (1832)
Q Consensus 1630 ~~l~~p~~v~i~~~~~~~~~------------------------i~q~--~~--------~~------------------ 1657 (1832)
.++..|.............. +.+. .. ++
T Consensus 456 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~ 535 (936)
T 4a2w_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (936)
T ss_dssp HHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHH
T ss_pred HhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchh
Confidence 22233332221111000000 0000 00 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 1658 --------------------------------------------------------------------------SEQDKR 1663 (1832)
Q Consensus 1658 --------------------------------------------------------------------------~~~~k~ 1663 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (936)
T 4a2w_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHH
Confidence 012355
Q ss_pred HHHHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHhhC-CCC
Q psy6409 1664 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1726 (1832)
Q Consensus 1664 ~~l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~------------~~~v~~lHg~ls~~~R~~il~~F~~-g~~ 1726 (1832)
..|.++|.. ....++||||+++..++.|+..|... |.++..+||+|++.+|..+++.|++ |++
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~ 695 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCe
Confidence 556666654 35689999999999999999999986 6667778999999999999999999 999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 696 ~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999 998 78999999987643
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=386.35 Aligned_cols=320 Identities=24% Similarity=0.298 Sum_probs=247.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.++++.++.+ ++|+++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+++.+++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999999 99999999999999999999876641 36679999999999999999999987
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~ 1584 (1832)
...+.++..++|+...... ..+..+++|+|+||+.+...+....+.+.++++|||||||++.+......+...+...
T Consensus 77 ~~~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~-- 153 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-- 153 (494)
T ss_dssp CSCGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH--
T ss_pred CcchhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc--
Confidence 5445588889998876643 3334468999999999999998888889999999999999987653332222222211
Q ss_pred CCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHH---HHHHhcCCCcEEEEcccCCC-------CcceEEEE
Q psy6409 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER---LARSYLRRPATVYIGSVGKP-------TERIEQIV 1654 (1832)
Q Consensus 1585 ~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~---~~~~~l~~p~~v~i~~~~~~-------~~~i~q~~ 1654 (1832)
....+++++|||+...... ++..+... .+........ ...+....
T Consensus 154 -----------------------~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (494)
T 1wp9_A 154 -----------------------AKNPLVIGLTASPGSTPEKIMEVINNLGIE--HIEYRSENSPDVRPYVKGIRFEWVR 208 (494)
T ss_dssp -----------------------CSSCCEEEEESCSCSSHHHHHHHHHHTTCC--EEEECCTTSTTTGGGCCCCCEEEEE
T ss_pred -----------------------CCCCeEEEEecCCCCCcHHHHHHHHhcChh--eeeccCCCcHHHHHhcCCCceeEEe
Confidence 2346899999999854333 33222111 1111000000 00000000
Q ss_pred EEc-----------------------------------------------------------------------------
Q psy6409 1655 YIL----------------------------------------------------------------------------- 1657 (1832)
Q Consensus 1655 ~~~----------------------------------------------------------------------------- 1657 (1832)
...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
T 1wp9_A 209 VDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIEL 288 (494)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------------------------------chhhHHHHHHHHHHh----CCCCcEEEEE
Q psy6409 1658 ---------------------------------------------------SEQDKRKKLMEVLNR----GVKKPVIIFV 1682 (1832)
Q Consensus 1658 ---------------------------------------------------~~~~k~~~l~~~l~~----~~~~~vIVFv 1682 (1832)
....|...+.+++.. ....++||||
T Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 368 (494)
T 1wp9_A 289 LETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368 (494)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 122355666666665 4688999999
Q ss_pred CchhHHHHHHHHHHHcCCcEEEEcC--------CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC
Q psy6409 1683 NQKKGADVLAKGLEKLGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~~~v~~lHg--------~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~ 1754 (1832)
+++..++.++..|...|+.+..+|| +++..+|..+++.|++|+++|||||+++++|||+|++++||+||+|+
T Consensus 369 ~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~ 448 (494)
T 1wp9_A 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP 448 (494)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH
T ss_pred ccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccccCCCccEEEEEeeCCChh
Q psy6409 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1755 s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~ 1785 (1832)
|+..|+||+||+||.|+ |.++.|+++.+.+
T Consensus 449 ~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 449 SAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred CHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999998 9999999998643
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=409.14 Aligned_cols=326 Identities=21% Similarity=0.266 Sum_probs=245.1
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
+.+.+.+..+|| +||++|.++|+.++.+ .|+|++||||||||++|++|++..+. .+.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------------~g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------------AGFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------------HTSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH------------cCCeEEE
Confidence 355566688999 9999999999999875 58999999999999999999998763 2678999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||++||.|+++.+.+++..+|+++..++|+....+.. ..+..+ ++|+|+||+.+.+ .+.+.++++||||
T Consensus 423 laPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVID 497 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIID 497 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEec
Confidence 999999999999999999988999999999999866543 334444 9999999997743 4568899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.... . .. +.......+++++|||+++....+ .+..+.....+.
T Consensus 498 EaHr~g~~q-----r---~~----------------------l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~ 545 (780)
T 1gm5_A 498 EQHRFGVKQ-----R---EA----------------------LMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVID 545 (780)
T ss_dssp SCCCC-------------CC----------------------CCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEEC
T ss_pred ccchhhHHH-----H---HH----------------------HHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeee
Confidence 999853110 0 00 011123578999999987654433 333333222232
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEccc--------chHHHHHHHHHH---cCCcEEEEcCC
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQK--------KGADVLAKGLEK---LGYNACTLHGG 1033 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~--------~~~~~l~~~L~~---~g~~v~~lhg~ 1033 (1832)
........+...+ . ...+...+.+.+.. ..+.+++|||++. ..++.+++.|.. .++.+..+||+
T Consensus 546 ~~p~~r~~i~~~~--~-~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 546 EMPPGRKEVQTML--V-PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp CCCSSCCCCEECC--C-CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSS
T ss_pred ccCCCCcceEEEE--e-ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCC
Confidence 2211112222221 1 12223334444432 3467899999966 457888888887 47889999999
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCCchHH
Q psy6409 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112 (1832)
Q Consensus 1034 ~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~ 1112 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|. +...|.||+|||||.|..|.|++++++.+....
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 9999999999999999999999999999999999999999999996 789999999999999999999999985443333
Q ss_pred HHH
Q psy6409 1113 YDL 1115 (1832)
Q Consensus 1113 ~~l 1115 (1832)
..+
T Consensus 703 ~rl 705 (780)
T 1gm5_A 703 ERL 705 (780)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=419.09 Aligned_cols=339 Identities=21% Similarity=0.246 Sum_probs=228.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH-HHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI-EEETNK 827 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi-~~~~~~ 827 (1832)
.+|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+. ...+.++|||+|+++|+.|+ .+.+++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH------HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999987754221 23457899999999999999 999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHH------HccccccCCceeEEEecchhhhcCCChH-HH
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL------ENRYLVLNQCTYIVLDEADRMIDMGFEP-DV 900 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l------~~~~~~l~~~~~lViDEaH~l~d~gf~~-~i 900 (1832)
++.. ++++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++...++.. .+
T Consensus 80 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 80 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred HcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 8765 58999999998877666666678999999999999888 4445678899999999999986543322 22
Q ss_pred HHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH-----------HHHHHHHh-------------
Q psy6409 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-----------VERLARSY------------- 956 (1832)
Q Consensus 901 ~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~-----------v~~~~~~~------------- 956 (1832)
...+.... ................+++++|||++.. +..+...+
T Consensus 159 ~~~l~~~~------------~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~ 226 (699)
T 4gl2_A 159 RHYLMQKL------------KNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLD 226 (699)
T ss_dssp HHHHHHHH------------HHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHH
T ss_pred HHHHHhhh------------cccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchH
Confidence 22221100 0000000000111446899999999862 12222111
Q ss_pred -----cCCCcEEEEcccCCCC-----------------------cceE-----E--------------------------
Q psy6409 957 -----LRRPATVYIGSVGKPT-----------------------ERIE-----Q-------------------------- 977 (1832)
Q Consensus 957 -----l~~p~~v~~~~~~~~~-----------------------~~i~-----q-------------------------- 977 (1832)
...|............ .... +
T Consensus 227 ~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (699)
T 4gl2_A 227 QLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK 306 (699)
T ss_dssp HHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHH
T ss_pred HHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1222211110000000 0000 0
Q ss_pred ----------------------------------------EEEEcc--------------------------hhhHHHHH
Q psy6409 978 ----------------------------------------IVYILS--------------------------EQDKRKKL 991 (1832)
Q Consensus 978 ----------------------------------------~~~~~~--------------------------~~~k~~~L 991 (1832)
....+. ...|...|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L 386 (699)
T 4gl2_A 307 YNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKL 386 (699)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 000000 01112222
Q ss_pred HHHHHc----CC-CCCEEEEEcccchHHHHHHHHHHc------CCcEEEEcCC--------CCHHHHHHHHHHHhCCCCc
Q psy6409 992 MEVLNR----GV-KKPVIIFVNQKKGADVLAKGLEKL------GYNACTLHGG--------KGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 992 ~~~l~~----~~-~~~vIVFv~s~~~~~~l~~~L~~~------g~~v~~lhg~--------~~~~~R~~il~~F~~G~~~ 1052 (1832)
.++|.. .. +.++||||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|+++
T Consensus 387 ~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~ 466 (699)
T 4gl2_A 387 RNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN 466 (699)
T ss_dssp HHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C
T ss_pred HHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc
Confidence 333332 23 789999999999999999999987 8999999999 9999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
|||||+++++|||+|+|++||+||+|.|+.+|+||+|||||.| +.+++++..++
T Consensus 467 VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 467 LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999999999999999999999987754 44444444443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=413.33 Aligned_cols=335 Identities=21% Similarity=0.244 Sum_probs=226.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH-HHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI-EEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi-~~~~~~~ 1503 (1832)
.|+|+|.++++.++.|+|+|+++|||||||++|++|++.++...+. ...+.++|||+|+++|+.|+ .+.++++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH------HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999987765321 12347799999999999999 9999998
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHH------HccccccCCceeEEEccchhhhcCCChH-HHH
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL------ENRYLVLNQCTYIVLDEADRMIDMGFEP-DVQ 1576 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l------~~~~~~l~~v~llViDEaH~ll~~gf~~-~l~ 1576 (1832)
+.. ++++..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...++.. .+.
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 765 58899999998876655566678999999999999888 4455778899999999999986544322 222
Q ss_pred HHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH--------H---HHHHHH---------------
Q psy6409 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA--------V---ERLARS--------------- 1630 (1832)
Q Consensus 1577 ~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~--------~---~~~~~~--------------- 1630 (1832)
..+.... ...............++++++|||++.. . ..+...
T Consensus 160 ~~l~~~~------------~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~ 227 (699)
T 4gl2_A 160 HYLMQKL------------KNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQ 227 (699)
T ss_dssp HHHHHHH------------HHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHH
T ss_pred HHHHhhh------------cccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHH
Confidence 2211100 0000000000111446899999999862 1 112111
Q ss_pred ---hcCCCcEEEEcccCCCC-----------------------cceE-----E---------------------------
Q psy6409 1631 ---YLRRPATVYIGSVGKPT-----------------------ERIE-----Q--------------------------- 1652 (1832)
Q Consensus 1631 ---~l~~p~~v~i~~~~~~~-----------------------~~i~-----q--------------------------- 1652 (1832)
+...|............ .... +
T Consensus 228 l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (699)
T 4gl2_A 228 LKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKY 307 (699)
T ss_dssp HHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHH
T ss_pred HhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11122211110000000 0000 0
Q ss_pred ---------------------------------------EEEEcc--------------------------hhhHHHHHH
Q psy6409 1653 ---------------------------------------IVYILS--------------------------EQDKRKKLM 1667 (1832)
Q Consensus 1653 ---------------------------------------~~~~~~--------------------------~~~k~~~l~ 1667 (1832)
...... ...|...|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~ 387 (699)
T 4gl2_A 308 NEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLR 387 (699)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 000000 001111222
Q ss_pred HHHHh----CC-CCcEEEEECchhHHHHHHHHHHHc------CCcEEEEcCC--------CCHHHHHHHHHHhhCCCCcE
Q psy6409 1668 EVLNR----GV-KKPVIIFVNQKKGADVLAKGLEKL------GYNACTLHGG--------KGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1668 ~~l~~----~~-~~~vIVFv~s~~~a~~l~~~L~~~------~~~v~~lHg~--------ls~~~R~~il~~F~~g~~~V 1728 (1832)
+++.. .+ ..++||||+++..++.|+..|... |+.+..+||+ |++.+|..+++.|++|+++|
T Consensus 388 ~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~V 467 (699)
T 4gl2_A 388 NTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINL 467 (699)
T ss_dssp HHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CC
T ss_pred HHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcE
Confidence 33322 23 789999999999999999999987 8999999999 99999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
||||+++++|||+|+|++||+||+|.|+.+|+||+|||||.| .+++|+..
T Consensus 468 LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 468 LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999999999999999987654 44444444
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=409.94 Aligned_cols=315 Identities=18% Similarity=0.134 Sum_probs=235.6
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 733 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 733 ~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
+++++.++++|... +..|+|+|+.++|.++.|+|+|++||||||||++|++|++..+.. .++++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~vLvl~ 222 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRTLILA 222 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEc
Confidence 45666666666543 588999999999999999999999999999999999999987632 367899999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|||+||.|+.+.+.. ..+. +.++.. . .....+..+.++|.+.+...+... ..+.++++|||||||+|
T Consensus 223 PtreLa~Qi~~~l~~------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 223 PTRVVAAEMEEALRG------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp SSHHHHHHHHHHTTT------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-
T ss_pred ChHHHHHHHHHHhcC------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-
Confidence 999999999988763 2233 222110 0 011124567778888877665544 35899999999999988
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 972 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~ 972 (1832)
+.+|...+..|+..++ ....|+++||||+|..+..++. .++..+.+.... +.
T Consensus 290 ~~~~~~~~~~i~~~l~------------------------~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~~ 341 (618)
T 2whx_A 290 DPCSVAARGYISTRVE------------------------MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-PE 341 (618)
T ss_dssp SHHHHHHHHHHHHHHH------------------------HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-CS
T ss_pred CccHHHHHHHHHHHhc------------------------ccCccEEEEECCCchhhhhhhc---cCCceeeecccC-CH
Confidence 7777777777776542 1347999999999876543222 234433332211 10
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
. +...++..+.. ..+++||||++++.|+.+++.|...++.+..+||. +|..+++.|++|+++
T Consensus 342 ~-------------~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~ 403 (618)
T 2whx_A 342 R-------------SWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD 403 (618)
T ss_dssp S-------------CCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS
T ss_pred H-------------HHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE
Confidence 0 01122333333 36689999999999999999999999999999984 788899999999999
Q ss_pred EEEecccccccCCCcCcCEE--------------------EEcCCCCCHhHHHHHhcccccCCC-CcEEEEEec---CCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMV--------------------INYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCT---KDD 1108 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~V--------------------I~~d~p~s~~~yvQr~GRaGR~g~-~G~ai~~~~---~~d 1108 (1832)
|||||+++++|||+| |++| |+|++|.+.++|+||+|||||.|. .|.|++|++ ++|
T Consensus 404 VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d 482 (618)
T 2whx_A 404 FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKND 482 (618)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhh
Confidence 999999999999998 9988 788889999999999999999965 799999998 777
Q ss_pred chHHHHHHHHH
Q psy6409 1109 SHLFYDLKQMM 1119 (1832)
Q Consensus 1109 ~~~~~~l~~~l 1119 (1832)
..++..++..+
T Consensus 483 ~~~l~~le~~i 493 (618)
T 2whx_A 483 EDHAHWTEAKM 493 (618)
T ss_dssp TTCHHHHHHHH
T ss_pred HHHHHHHHhHh
Confidence 77777766543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=401.79 Aligned_cols=323 Identities=21% Similarity=0.263 Sum_probs=244.1
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
+.+...+..++| .|||+|.++++.++.+ .|++++||||||||++|++|++..+.. +.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 556667788999 9999999999999865 599999999999999999999987643 678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
|+||++||.|+++.+.+++..+++++..++|+.+..... ..+.. .++|+|+||+.+.+ .+.+.++++||||
T Consensus 423 laPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVID 497 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIID 497 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEec
Confidence 999999999999999999988899999999998876532 23444 48999999987743 4568899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++.... . ..+ .......+++++|||+.+...... +..+.....+.
T Consensus 498 EaHr~g~~q-----r---~~l----------------------~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~ 545 (780)
T 1gm5_A 498 EQHRFGVKQ-----R---EAL----------------------MNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVID 545 (780)
T ss_dssp SCCCC-------------CCC----------------------CSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEEC
T ss_pred ccchhhHHH-----H---HHH----------------------HHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeee
Confidence 999862110 0 000 111235789999999877654433 22222222222
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHh--CCCCcEEEEECch--------hHHHHHHHHHHH---cCCcEEEEcCC
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQK--------KGADVLAKGLEK---LGYNACTLHGG 1708 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~--------~~a~~l~~~L~~---~~~~v~~lHg~ 1708 (1832)
........+...+ ....+...+...+.. ....+++|||+++ ..++.++..|.. .++.+..+||+
T Consensus 546 ~~p~~r~~i~~~~---~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 546 EMPPGRKEVQTML---VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp CCCSSCCCCEECC---CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSS
T ss_pred ccCCCCcceEEEE---eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCC
Confidence 1111111222211 122233444444433 2467899999976 457888888887 47889999999
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCChhHH
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~ 1787 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|..|.|++++++.+....
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 9999999999999999999999999999999999999999999996 789999999999999999999999985444333
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=405.37 Aligned_cols=335 Identities=16% Similarity=0.229 Sum_probs=251.1
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
+.++..|.++++++.+.+.+...| ..|+++|+++|+.++. |++++++||||||||+ ++|++..... ...
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-------~~~ 137 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-------MPH 137 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-------CGG
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-------ccc
Confidence 346778999999999999999998 7899999999999886 5689999999999999 6777632111 011
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHh-cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~-~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
..+++++|++|+++||.|++..+... +...+..++..+.... .....++|+|+|||++.+.+.... .+.+++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~ 210 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH-DLSRYS 210 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST-TCTTEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc-cccCCC
Confidence 23678999999999999998877554 2233333332222111 112468999999999998876653 689999
Q ss_pred eEEEecchh-hhcCCC-hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 882 YIVLDEADR-MIDMGF-EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 882 ~lViDEaH~-l~d~gf-~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+|||||||. +++..+ ...+..+.. .....|++++|||++. +.+...+ .+
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~--------------------------~~~~~~iIl~SAT~~~--~~l~~~~-~~ 261 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVK--------------------------RRPDLKIIIMSATLDA--EKFQRYF-ND 261 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHH--------------------------HCTTCEEEEEESCSCC--HHHHHHT-TS
T ss_pred EEEecCccccccchHHHHHHHHHHHH--------------------------hCCCceEEEEeccccH--HHHHHHh-cC
Confidence 999999995 554221 111222221 1235799999999964 4555544 44
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchhh----HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH-----------cC
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILSEQD----KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-----------LG 1024 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~~~~----k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~-----------~g 1024 (1832)
+..+.+.... ..+.+.+....... ....+.+++.....+++||||+++..|+.++..|.. .+
T Consensus 262 ~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~ 338 (773)
T 2xau_A 262 APLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP 338 (773)
T ss_dssp CCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 4444433222 22444333333222 334455555555788999999999999999999975 47
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHh-----CCCCcEEEecccccccCCCcCcCEEEEcCC------------------CCCH
Q psy6409 1025 YNACTLHGGKGQEQRELALNSLK-----GGSKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSI 1081 (1832)
Q Consensus 1025 ~~v~~lhg~~~~~~R~~il~~F~-----~G~~~VLVaTdv~~rGlDip~v~~VI~~d~------------------p~s~ 1081 (1832)
+.+..+||+|++.+|..+++.|+ +|..+|||||+++++|||||+|.+||++++ |.|.
T Consensus 339 ~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~ 418 (773)
T 2xau_A 339 LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418 (773)
T ss_dssp EEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCH
T ss_pred eEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCH
Confidence 88999999999999999999999 999999999999999999999999999888 8899
Q ss_pred hHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1082 EDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1082 ~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++|+||+|||||. ..|.|++|+++++
T Consensus 419 ~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 419 ASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp HHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred HHHHhhccccCCC-CCCEEEEEecHHH
Confidence 9999999999999 6799999998654
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=354.73 Aligned_cols=216 Identities=42% Similarity=0.695 Sum_probs=180.4
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||++|++|++.++..............++.+|||+||||||.|++
T Consensus 38 l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 117 (253)
T 1wrb_A 38 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 117 (253)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHH
Confidence 67889999999999999999999999999999999999999999988865432211112245689999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++...++.+++++||.+...+...+..+++|+|+|||||.+++..+.+.+.++++||+||||+|+++||.+++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 118 SESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 99999999889999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|++.+... . ...
T Consensus 198 i~~~~~~~--------------------------------------------------~------------------~~~ 209 (253)
T 1wrb_A 198 IIEESNMP--------------------------------------------------S------------------GIN 209 (253)
T ss_dssp HHHSSCCC--------------------------------------------------C------------------GGG
T ss_pred HHhhccCC--------------------------------------------------C------------------CCC
Confidence 99864210 0 023
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcccCCcchhhHHHH
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1832)
+|+++||||+|+.+++++..||.+|+.|.|+..+.++++|+|.+
T Consensus 210 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~~ 253 (253)
T 1wrb_A 210 RQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253 (253)
T ss_dssp CEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred cEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceecC
Confidence 79999999999999999999999999999999999999999964
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=345.31 Aligned_cols=238 Identities=42% Similarity=0.729 Sum_probs=216.5
Q ss_pred ccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHH
Q psy6409 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 702 ~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla 781 (1832)
++++++..++..+.|.+.|...|.|+.+|++++|++.++++|.+.||..|+|+|.++|+.++.|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeec
Q psy6409 782 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861 (1832)
Q Consensus 782 ~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~ 861 (1832)
|++|++..+...+.. ....++++|||+||++||.|+.+.+.+++...++++..++||.....+...+..+++|+|+
T Consensus 83 ~~l~~l~~l~~~~~~----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 83 YLLPAIVHINHQPFL----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHTSCCC----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcccc----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 999999887543221 2245789999999999999999999999888899999999999998888888889999999
Q ss_pred CHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEE
Q psy6409 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941 (1832)
Q Consensus 862 TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~ 941 (1832)
||++|.+++.++...+.++++|||||||+|++++|++.+..|+..++ ...|+++|
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-------------------------~~~q~~~~ 213 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-------------------------PDRQTLMW 213 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-------------------------SSCEEEEE
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-------------------------ccceEEEE
Confidence 99999999998888899999999999999999999999999998874 24799999
Q ss_pred EecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 942 TATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 942 SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|||+|+.+..++..++.+|..+.++..
T Consensus 214 SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999887653
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=390.17 Aligned_cols=289 Identities=19% Similarity=0.150 Sum_probs=217.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDI-IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdv-Iv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
|+.+|+|+|+ +||.++.++++ |++||||||||++|++|++..+.. .++++||++||++||.|+.+.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7899999986 79999999887 999999999999999999976532 3678999999999999999887
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
. |+.+....+.... ....+..|.++|++.+.+.+.+. ..+.++++|||||||++ +.++...+..+..
T Consensus 69 ~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~ 135 (451)
T 2jlq_A 69 R------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIST 135 (451)
T ss_dssp T------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHH
T ss_pred c------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHH
Confidence 5 2333322222111 11235679999999998887654 46889999999999976 3333222222211
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 985 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~ 985 (1832)
.. .....|+++||||+|..+.. .+..++..+.+..... ....
T Consensus 136 ~~------------------------~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~p-~~~~---------- 177 (451)
T 2jlq_A 136 RV------------------------EMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREIP-ERSW---------- 177 (451)
T ss_dssp HH------------------------HTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCCC-SSCC----------
T ss_pred hh------------------------cCCCceEEEEccCCCccchh---hhcCCCceEecCccCC-chhh----------
Confidence 11 12358999999999875432 2334444444331111 1000
Q ss_pred hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCC
Q psy6409 986 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 986 ~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlD 1065 (1832)
..+...+.. ..+++||||++++.|+.+++.|...|+.+..+||.+. ..+++.|++|+++|||||+++++|||
T Consensus 178 ---~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiD 249 (451)
T 2jlq_A 178 ---NTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGAN 249 (451)
T ss_dssp ---SSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCC
T ss_pred ---HHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcC
Confidence 011222332 3568999999999999999999999999999999764 57999999999999999999999999
Q ss_pred CcCcCEEEEcC--------------------CCCCHhHHHHHhcccccCCC-CcEEEEEecCC
Q psy6409 1066 IKDVSMVINYD--------------------MAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1107 (1832)
Q Consensus 1066 ip~v~~VI~~d--------------------~p~s~~~yvQr~GRaGR~g~-~G~ai~~~~~~ 1107 (1832)
+|+ ++||||| +|.+..+|+||+|||||.|. .|.|++|+..+
T Consensus 250 ip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 250 FRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp CCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 999 9999999 99999999999999999998 78998887544
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=404.32 Aligned_cols=323 Identities=20% Similarity=0.198 Sum_probs=253.3
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHHHHHHHHc----CC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 734 SLPTEILEII-EKIGYAEPTPIQRQAIPIGLQ----NR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 734 ~L~~~l~~~l-~~~g~~~pt~iQ~~ai~~il~----gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+++....+.+ ..+||. |||+|.+||+.++. |+ |+|++||||||||++|+++++..+ ..++
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~------------~~g~ 653 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV------------DNHK 653 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH------------TTTC
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH------------HhCC
Confidence 3445555555 557885 69999999999986 66 999999999999999999998654 2467
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhc-CCceeecCHHHHHHHHHccccccCCcee
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
+++||+||++||.|+++.+.++...+++++..++|+.+..+.. ..+.. .++|+|+||+.|. +.+.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~l 728 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGL 728 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccce
Confidence 9999999999999999999998888899999999877655443 23444 4999999998662 3457889999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++ +.....++..++ ...++++||||+++....++...+.++..
T Consensus 729 vIiDEaH~~-----g~~~~~~l~~l~-------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~ 778 (1151)
T 2eyq_A 729 LIVDEEHRF-----GVRHKERIKAMR-------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSI 778 (1151)
T ss_dssp EEEESGGGS-----CHHHHHHHHHHH-------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEE
T ss_pred EEEechHhc-----ChHHHHHHHHhc-------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceE
Confidence 999999984 333444443331 34789999999877776666665554332
Q ss_pred EEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHH
Q psy6409 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 963 v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~ 1040 (1832)
+. ........+...+...........+...+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+
T Consensus 779 i~--~~~~~r~~i~~~~~~~~~~~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~ 854 (1151)
T 2eyq_A 779 IA--TPPARRLAVKTFVREYDSMVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 854 (1151)
T ss_dssp CC--CCCCBCBCEEEEEEECCHHHHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHH
T ss_pred Ee--cCCCCccccEEEEecCCHHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHH
Confidence 21 111112234444444333333333333332 4678999999999999999999988 88999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
.+++.|++|+++|||||+++++|||+|++++||+++. +.++.+|+||+||+||.|..|.|++++.+++
T Consensus 855 ~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 855 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999999999999999999999999999998 4699999999999999999999999987654
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=396.87 Aligned_cols=322 Identities=20% Similarity=0.197 Sum_probs=251.0
Q ss_pred CCHHHHHHH-HHcCCCCCcHHHHHHHHHHhc----CC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1410 LPTEILEII-EKIGYAEPTPIQRQAIPIGLQ----NR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1410 L~~~ll~~l-~~~g~~~ptpiQ~~ai~~il~----g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
+++...+.+ ..++| .|||+|.+|++.++. |+ |+|+++|||||||++|+++++..+. .+++
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g~~ 654 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NHKQ 654 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TTCE
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hCCe
Confidence 445555554 56788 479999999999986 66 9999999999999999999886542 3678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYI 1558 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~ll 1558 (1832)
++||+||++||.|+++.+.+.+..+++++..++|..+..... ..+.. .++|+|+||+.+. ..+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 999999999999999999998888889999888877655432 23444 4899999998652 34678899999
Q ss_pred EEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v 1638 (1832)
||||||++ +.....++..++ ...++++||||+++.........+.++..+
T Consensus 730 IiDEaH~~-----g~~~~~~l~~l~-------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i 779 (1151)
T 2eyq_A 730 IVDEEHRF-----GVRHKERIKAMR-------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSII 779 (1151)
T ss_dssp EEESGGGS-----CHHHHHHHHHHH-------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEEC
T ss_pred EEechHhc-----ChHHHHHHHHhc-------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEE
Confidence 99999984 233333333221 346899999999877766666555543332
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHH
Q psy6409 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1639 ~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~ 1716 (1832)
...+ .....+...+...........+...+ ..+++++|||+++.+++.++..|... ++.+..+||+|++.+|+.
T Consensus 780 ~~~~--~~r~~i~~~~~~~~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~ 855 (1151)
T 2eyq_A 780 ATPP--ARRLAVKTFVREYDSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 855 (1151)
T ss_dssp CCCC--CBCBCEEEEEEECCHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHH
T ss_pred ecCC--CCccccEEEEecCCHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHH
Confidence 2111 11223444444444333233333322 24678999999999999999999988 889999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC-CCCHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+++.|++|+++|||||+++++|||+|++++||+++. +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 856 il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 856 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999999999999999999999998 5689999999999999999999999987653
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=357.23 Aligned_cols=187 Identities=28% Similarity=0.493 Sum_probs=168.3
Q ss_pred cccccCCCCChhhhhhcccccCC--CcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 79 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g--~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~q 79 (1832)
|.++||.+|||+|.+|||.++.| +|++++||||||||+||+||++.++... ..+|+||||+||||||.|
T Consensus 107 l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------~~~~~~lil~PtreLa~Q 177 (300)
T 3fmo_B 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------NKYPQCLCLSPTYELALQ 177 (300)
T ss_dssp HHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---------CCCceEEEEcCcHHHHHH
Confidence 56789999999999999999998 9999999999999999999999876432 457899999999999999
Q ss_pred HHHHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhh-ccccCCcceEEEEcccchhhc-CCCh
Q psy6409 80 IEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMID-MGFE 156 (1832)
Q Consensus 80 i~~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~l~~~~~~vlDEad~~l~-~gf~ 156 (1832)
+++++++++... ++...+++||.....+. ..+++|||+|||||.+++.+ +.+.++++++|||||||+|++ +||.
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~ 254 (300)
T 3fmo_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ 254 (300)
T ss_dssp HHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHH
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcH
Confidence 999999998764 68889999998865443 57899999999999999966 678899999999999999999 7999
Q ss_pred HHHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcc
Q psy6409 157 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236 (1832)
Q Consensus 157 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1832)
+++..|+..+|.
T Consensus 255 ~~~~~i~~~~~~-------------------------------------------------------------------- 266 (300)
T 3fmo_B 255 DQSIRIQRMLPR-------------------------------------------------------------------- 266 (300)
T ss_dssp HHHHHHHTTSCT--------------------------------------------------------------------
T ss_pred HHHHHHHHhCCC--------------------------------------------------------------------
Confidence 999999887751
Q ss_pred ccccceeEEEEEccCcHHHHHHHHHHhcCCeEEEEc
Q psy6409 237 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 272 (1832)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1832)
.+|++|||||||+.|+++|..||++|+.|.|.
T Consensus 267 ----~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 267 ----NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ----TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ----CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 17999999999999999999999999999875
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.47 Aligned_cols=194 Identities=46% Similarity=0.734 Sum_probs=168.6
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||+||++|++..+....... ....++.+|||+||||||.|++
T Consensus 35 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~---~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 35 IIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR---EQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------CCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh---hccCCCcEEEEeCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999998876432111 1246789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++ ..++..++++||.+...+...+..+++|+|+|||||.+++..+.+.+.++++||+||||+|+++||.+++..
T Consensus 112 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 190 (228)
T 3iuy_A 112 AECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK 190 (228)
T ss_dssp HHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHH
T ss_pred HHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHH
Confidence 9999997 458899999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|+..++ + .
T Consensus 191 i~~~~~----------------------------------------------------~--------------------~ 198 (228)
T 3iuy_A 191 ILLDVR----------------------------------------------------P--------------------D 198 (228)
T ss_dssp HHHHSC----------------------------------------------------S--------------------S
T ss_pred HHHhCC----------------------------------------------------c--------------------C
Confidence 998774 1 1
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
+|+++||||||+.+++++..||.+|+.|+|
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 799999999999999999999999999986
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=395.34 Aligned_cols=326 Identities=18% Similarity=0.135 Sum_probs=240.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
+++++.++++|... +..|+|+|.++++.++.|+|+|++||||||||++|++|++..+.. .++++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~vLvl~ 222 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRTLILA 222 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEc
Confidence 34555555555443 478999998899999999999999999999999999999987643 367899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
||++||.|+++.+..+ .+. +.+.... .....+..+.++|.+.+...+... ..+.++++|||||||++
T Consensus 223 PtreLa~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 223 PTRVVAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp SSHHHHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-
T ss_pred ChHHHHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-
Confidence 9999999999887632 222 2221100 011224567788888887666543 45889999999999987
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 1647 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~ 1647 (1832)
+.+|...+..|+..++ ...+|+++||||++..+..+.. .++..+.+.... +.
T Consensus 290 ~~~~~~~~~~i~~~l~------------------------~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~~ 341 (618)
T 2whx_A 290 DPCSVAARGYISTRVE------------------------MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-PE 341 (618)
T ss_dssp SHHHHHHHHHHHHHHH------------------------HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-CS
T ss_pred CccHHHHHHHHHHHhc------------------------ccCccEEEEECCCchhhhhhhc---cCCceeeecccC-CH
Confidence 6667777777765542 1347999999999887543221 233333332210 10
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1648 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+...++..+.. ..+++||||+|++.|+.++..|...++.+..+||. +|..+++.|++|+++
T Consensus 342 -------------~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~ 403 (618)
T 2whx_A 342 -------------RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD 403 (618)
T ss_dssp -------------SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS
T ss_pred -------------HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE
Confidence 001122233333 35789999999999999999999999999999984 788899999999999
Q ss_pred EEEEcccccccCCCCCCCEE--------------------EEeCCCCCHHHHHHHhcccccCCC-ccEEEEEee---CCC
Q psy6409 1728 ILVATDVAGRGIDIKDVSMV--------------------INYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCT---KDD 1783 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~V--------------------I~~d~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~---~~d 1783 (1832)
|||||+++++|||+| +++| |+|++|.+.++|+||+|||||+|. .|.|++|++ +.|
T Consensus 404 VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d 482 (618)
T 2whx_A 404 FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKND 482 (618)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhh
Confidence 999999999999998 9988 888889999999999999999965 899999998 778
Q ss_pred hhHHHHHHHHhhcCCCCCCChhh
Q psy6409 1784 SHLFYDLKQMMISSPVSTCPPEL 1806 (1832)
Q Consensus 1784 ~~~~~~l~~~l~~~~~~~~~~~L 1806 (1832)
...+..+...+.-.+ ..++..+
T Consensus 483 ~~~l~~le~~i~l~~-~~~~~~~ 504 (618)
T 2whx_A 483 EDHAHWTEAKMLLDN-IYTPEGI 504 (618)
T ss_dssp TTCHHHHHHHHHHTT-CCCTTCC
T ss_pred HHHHHHHHhHhcccc-ccCCcch
Confidence 888888887654433 4555443
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=386.47 Aligned_cols=281 Identities=22% Similarity=0.231 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.+.++|.++++.+..++|+|++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia~~l~~~- 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFGAYMSKA- 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHHHHHHHH-
Confidence 445566666666667899999999999999999999873 2568999999999999999877664
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~ 909 (1832)
++..+...+|+.. +..+++|+|+|||+| +.+..+.+.++++||||||| +++.+|...+..|+..++.
T Consensus 281 --~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~ 347 (666)
T 3o8b_A 281 --HGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAET 347 (666)
T ss_dssp --HSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTT
T ss_pred --hCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhh
Confidence 3556777788765 345799999999998 46667788899999999996 6778888888888887752
Q ss_pred CCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHH
Q psy6409 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 989 (1832)
Q Consensus 910 ~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~ 989 (1832)
. ....++++|||+|..+. ...|....+...... .+ ........
T Consensus 348 ~-----------------------~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~~--~i----~~~~~~~~-- 390 (666)
T 3o8b_A 348 A-----------------------GARLVVLATATPPGSVT------VPHPNIEEVALSNTG--EI----PFYGKAIP-- 390 (666)
T ss_dssp T-----------------------TCSEEEEEESSCTTCCC------CCCTTEEEEECBSCS--SE----EETTEEEC--
T ss_pred c-----------------------CCceEEEECCCCCcccc------cCCcceEEEeecccc--hh----HHHHhhhh--
Confidence 1 12347778999987421 122222222111110 01 11100000
Q ss_pred HHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc
Q psy6409 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069 (1832)
Q Consensus 990 ~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v 1069 (1832)
+.....+++||||++++.|+.+++.|...++.+..+||+|++.+ |.++..+|||||+++++|||+| |
T Consensus 391 -----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V 457 (666)
T 3o8b_A 391 -----IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-F 457 (666)
T ss_dssp -----GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-B
T ss_pred -----hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-C
Confidence 12235778999999999999999999999999999999999875 5567779999999999999997 9
Q ss_pred CEEE----------EcC-----------CCCCHhHHHHHhcccccCCCCcEEEEEecCCCchH
Q psy6409 1070 SMVI----------NYD-----------MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111 (1832)
Q Consensus 1070 ~~VI----------~~d-----------~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~ 1111 (1832)
++|| ||| +|.+.++|+||+||||| |..|. ++|+++++...
T Consensus 458 ~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 458 DSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp SEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 9988 777 89999999999999999 88999 99999987654
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=383.80 Aligned_cols=311 Identities=16% Similarity=0.156 Sum_probs=236.0
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
..+|+|+|.+|++.++.++++++++|||||||++|++|++..+.. .++++|||+||++|+.|+.+.+.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999876531 234899999999999999999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++...++.+..++||.+..++ +..+++|+|+||+.|.. .....+.++++|||||||++.. +.+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 877667889999999876554 45579999999997643 3345678899999999999875 4556665554
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH-HHhcCCCcEEEEccc------CCCCcceEEEEE
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSV------GKPTERIEQIVY 980 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~-~~~l~~p~~v~~~~~------~~~~~~i~q~~~ 980 (1832)
+ ...+++++|||++.....+. ...+..+..+.+... ......+.....
T Consensus 250 ~-------------------------~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (510)
T 2oca_A 250 N-------------------------NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFL 304 (510)
T ss_dssp T-------------------------TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEE
T ss_pred c-------------------------cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEee
Confidence 2 23689999999976543211 112222322211111 001111111111
Q ss_pred Ecc---------------------hhhHHHHHHHHHHcC---CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 981 ILS---------------------EQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 981 ~~~---------------------~~~k~~~L~~~l~~~---~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
... ...+...+.+++... ...++||||+ ...++.+++.|...+..+..+||++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~ 383 (510)
T 2oca_A 305 RYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDT 383 (510)
T ss_dssp ECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTH
T ss_pred cCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCH
Confidence 111 112333344444432 3445666666 888999999999998899999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEec-ccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1037 EQRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaT-dv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
.+|..+++.|++|+++||||| +++++|||+|++++||++++|.+...|+|++||+||.|..|.++++++
T Consensus 384 ~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 384 ETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999 999999999999999999999999999999999999998775666665
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=401.15 Aligned_cols=306 Identities=19% Similarity=0.214 Sum_probs=213.8
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 742 IIEKIGYA-----EPTPIQR-----QAIPIGL------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 742 ~l~~~g~~-----~pt~iQ~-----~ai~~il------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
+|...||. .|||+|+ ++||.++ .|+|+|++||||||||++|++|++..+.. .+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~ 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KR 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TT
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 45556777 9999999 9999988 89999999999999999999999987532 46
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
+++|||+||++||.|+++.+..+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++|||
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvVi 338 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVM 338 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEE
T ss_pred CcEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEE
Confidence 78999999999999999888754 222 11111000 00001222233344443333332 36889999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||++ +..+...+..+...+ .....|+++||||+++.+..+... ..|.....
T Consensus 339 DEaH~~-~~~~~~~~~~l~~~~------------------------~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~ 391 (673)
T 2wv9_A 339 DEAHFT-DPASIAARGYIATRV------------------------EAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVS 391 (673)
T ss_dssp ESTTCC-CHHHHHHHHHHHHHH------------------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE
T ss_pred eCCccc-CccHHHHHHHHHHhc------------------------cccCCcEEEEcCCCChhhhhhccc--CCceEEEe
Confidence 999987 211111222221111 013579999999998764422211 11211111
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.. +... ....++..+.. ..+++||||++++.|+.+++.|...++.+..+||. +|..+++.
T Consensus 392 ~~--------------~~~~-~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~ 451 (673)
T 2wv9_A 392 SE--------------IPDR-AWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPK 451 (673)
T ss_dssp CC--------------CCSS-CCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGG
T ss_pred ee--------------cCHH-HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHH
Confidence 10 0111 11112233332 46789999999999999999999999999999994 79999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEE--------------------cCCCCCHhHHHHHhcccccC-CCCcEEEEEe
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVIN--------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC 1104 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~--------------------~d~p~s~~~yvQr~GRaGR~-g~~G~ai~~~ 1104 (1832)
|++|+++|||||+++++|||+| +++||| |++|.+.++|+||+|||||. |..|.|++|+
T Consensus 452 F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 452 CKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp GGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred HHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999999999999999999999 999998 67899999999999999999 7889999996
Q ss_pred ---cCCCchHHHHHHHH
Q psy6409 1105 ---TKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1105 ---~~~d~~~~~~l~~~ 1118 (1832)
+++|..++..++..
T Consensus 531 ~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 531 GGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp SCCCCCCTTBHHHHHHH
T ss_pred ecCChhHHHHHHHHHHH
Confidence 56676666666543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=375.46 Aligned_cols=289 Identities=19% Similarity=0.149 Sum_probs=215.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNRDI-IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~dv-ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
|+.+|+|+|. +||.++.++++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7889999985 79999999887 899999999999999999876533 3678999999999999999887
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
.. ..+....+.... ....+..|.++|++.+...+.+. ..+.++++|||||||++ +.++...+..+..
T Consensus 69 ~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~ 135 (451)
T 2jlq_A 69 RG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIST 135 (451)
T ss_dssp TT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHH
T ss_pred cC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHH
Confidence 53 223221111110 12235679999999998877654 56889999999999976 3222222222211
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 1660 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~ 1660 (1832)
.. .....|+++||||++..+.. .+...+..+.+... .+... +
T Consensus 136 ~~------------------------~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-~p~~~----~------ 177 (451)
T 2jlq_A 136 RV------------------------EMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-IPERS----W------ 177 (451)
T ss_dssp HH------------------------HTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-CCSSC----C------
T ss_pred hh------------------------cCCCceEEEEccCCCccchh---hhcCCCceEecCcc-CCchh----h------
Confidence 11 12357999999999875432 22333443333211 11100 0
Q ss_pred hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCC
Q psy6409 1661 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1740 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GID 1740 (1832)
..+..++... .+++||||+++.+|+.++..|...++.+..+||.+. ..+++.|++|+++|||||+++++|||
T Consensus 178 ---~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiD 249 (451)
T 2jlq_A 178 ---NTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGAN 249 (451)
T ss_dssp ---SSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCC
T ss_pred ---HHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcC
Confidence 0112233333 568999999999999999999999999999999754 57999999999999999999999999
Q ss_pred CCCCCEEEEeC--------------------CCCCHHHHHHHhcccccCCC-ccEEEEEeeCC
Q psy6409 1741 IKDVSMVINYD--------------------MAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1782 (1832)
Q Consensus 1741 ip~v~~VI~~d--------------------~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~~~ 1782 (1832)
+|+ ++||||| +|.+..+|+||+|||||.|. .|.+++|+..+
T Consensus 250 ip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 250 FRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp CCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 999 9999999 99999999999999999998 88998887543
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=379.59 Aligned_cols=310 Identities=16% Similarity=0.162 Sum_probs=234.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..|+|+|.++++.++.++++++++|||||||++|++|++..+.. .+.++|||+||++|+.|+++.+.++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999876642 2348999999999999999999998
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
+...+..+..+.|+.+...+ +..+++|+|+||+.+.. .....+.++++|||||||++.. +.+..++..++
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~ 250 (510)
T 2oca_A 181 RLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (510)
T ss_dssp TSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT
T ss_pred hcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc
Confidence 76667788888888776654 45578999999996643 3345678899999999999864 45666655553
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH-HhcCCCcEEEEcccC------CCCcceEEEEEE
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATVYIGSVG------KPTERIEQIVYI 1656 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~-~~l~~p~~v~i~~~~------~~~~~i~q~~~~ 1656 (1832)
...+++++|||++........ ..+..+..+.+.... .....+......
T Consensus 251 -------------------------~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 305 (510)
T 2oca_A 251 -------------------------NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLR 305 (510)
T ss_dssp -------------------------TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEE
T ss_pred -------------------------cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeec
Confidence 346899999999766432211 112223222111110 001111111111
Q ss_pred cc---------------------hhhHHHHHHHHHHhC---CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 1657 LS---------------------EQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712 (1832)
Q Consensus 1657 ~~---------------------~~~k~~~l~~~l~~~---~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~ 1712 (1832)
.. ...+...+.+++... ...++||||+ ..++..++..|...+..+..+||++++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~ 384 (510)
T 2oca_A 306 YPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTE 384 (510)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHH
T ss_pred CChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHH
Confidence 11 112333445555443 3445666666 8999999999999888999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEc-ccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1713 QRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVAT-dvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
+|..+++.|++|+++||||| +++++|||+|++++||+++.|.+...|+||+||+||.|..|.++++++
T Consensus 385 ~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 385 TRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999 999999999999999999999999999999999999988774444444
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=382.70 Aligned_cols=278 Identities=20% Similarity=0.243 Sum_probs=195.9
Q ss_pred HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEc
Q psy6409 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 841 (1832)
Q Consensus 762 il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~G 841 (1832)
+++|+|+|++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+ + +....+
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~ 67 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQ 67 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecc
Confidence 4678999999999999999999999986532 3678999999999999999988744 2 222111
Q ss_pred CCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--------ccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--------VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913 (1832)
Q Consensus 842 g~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--------~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~ 913 (1832)
.. -+|+||+++++++..+.+ .+.++++|||||||++ +.+|...+..+...+
T Consensus 68 ~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~------ 126 (440)
T 1yks_A 68 AF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRA------ 126 (440)
T ss_dssp CC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHH------
T ss_pred cc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHh------
Confidence 11 147888777655443332 3789999999999987 333333222222211
Q ss_pred CCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHH
Q psy6409 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993 (1832)
Q Consensus 914 ~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~ 993 (1832)
.....|+++||||+++.+..++.. ..|..... ..+..... ..++.
T Consensus 127 ------------------~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~-~~~~~ 171 (440)
T 1yks_A 127 ------------------RANESATILMTATPPGTSDEFPHS--NGEIEDVQ--------------TDIPSEPW-NTGHD 171 (440)
T ss_dssp ------------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCC-SSSCH
T ss_pred ------------------ccCCceEEEEeCCCCchhhhhhhc--CCCeeEee--------------eccChHHH-HHHHH
Confidence 023489999999998765432221 11111110 00111111 11122
Q ss_pred HHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE
Q psy6409 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI 1073 (1832)
Q Consensus 994 ~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI 1073 (1832)
.+.. .++++||||++++.|+.+++.|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||
T Consensus 172 ~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 172 WILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEE
T ss_pred HHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEE
Confidence 2222 3578999999999999999999999999999999 4688999999999999999999999999999 99999
Q ss_pred E-------------------cCCCCCHhHHHHHhcccccC-CCCcEEEEEe---cCCCchHHHHHHHH
Q psy6409 1074 N-------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC---TKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1074 ~-------------------~d~p~s~~~yvQr~GRaGR~-g~~G~ai~~~---~~~d~~~~~~l~~~ 1118 (1832)
+ |++|.+..+|+||+|||||. |..|.|++|+ ++++..++..+...
T Consensus 246 ~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred eCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH
Confidence 6 89999999999999999997 6789999996 67777777776654
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=338.38 Aligned_cols=191 Identities=46% Similarity=0.755 Sum_probs=177.0
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|+.
T Consensus 58 l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------~~~~~~lil~Ptr~L~~q~~ 128 (249)
T 3ber_A 58 CDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---------PQRLFALVLTPTRELAFQIS 128 (249)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------CCSSCEEEECSSHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------CCCceEEEEeCCHHHHHHHH
Confidence 568999999999999999999999999999999999999999999877543 34678999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhh-ccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+.+++++...++.+++++||.....+...+..+++|+|+|||+|.+++.. +.+.+.++++|||||||+|+++||.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~ 208 (249)
T 3ber_A 129 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVD 208 (249)
T ss_dssp HHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHH
T ss_pred HHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHH
Confidence 99999998889999999999999999999999999999999999999986 56789999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 209 ~i~~~~~~------------------------------------------------------------------------ 216 (249)
T 3ber_A 209 KILKVIPR------------------------------------------------------------------------ 216 (249)
T ss_dssp HHHHSSCS------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99987751
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
-+|+++||||+|+.+++++..||.+|+.|.|++
T Consensus 217 ~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~~ 249 (249)
T 3ber_A 217 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249 (249)
T ss_dssp SSEEEEEESSCCHHHHHHHHHHCSSCEEEECCC
T ss_pred CCeEEEEeccCCHHHHHHHHHHCCCCEEEEecC
Confidence 179999999999999999999999999998874
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=328.71 Aligned_cols=238 Identities=42% Similarity=0.729 Sum_probs=215.7
Q ss_pred cCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy6409 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 1456 (1832)
Q Consensus 1377 ~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla 1456 (1832)
++++++..++..+.|.+.|...|.|+.+|.+++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 45667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEe
Q psy6409 1457 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536 (1832)
Q Consensus 1457 ~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVa 1536 (1832)
|++|++..+...+.. ....++++|||+||++|+.|+++.+++++...++++..++||.+...+...+..+++|+|+
T Consensus 83 ~~l~~l~~l~~~~~~----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 83 YLLPAIVHINHQPFL----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHTSCCC----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcccc----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 999999887653321 2245788999999999999999999999888899999999999998888888889999999
Q ss_pred CHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEE
Q psy6409 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616 (1832)
Q Consensus 1537 TP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~ 1616 (1832)
||++|.+++..+...+.++++|||||||+|++++|.+.+..|+..++ ...|+++|
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-------------------------~~~q~~~~ 213 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-------------------------PDRQTLMW 213 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-------------------------SSCEEEEE
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-------------------------ccceEEEE
Confidence 99999999998888899999999999999999999999999988875 34799999
Q ss_pred EccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1617 TATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1617 SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|||+|+.+..++..++.+|..+.++..
T Consensus 214 SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999998887653
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=341.22 Aligned_cols=189 Identities=38% Similarity=0.607 Sum_probs=172.8
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||+||++|++..+...... ...++.+|||+||||||.|++
T Consensus 69 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-----~~~~~~~lil~Pt~~La~q~~ 143 (262)
T 3ly5_A 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-----PRNGTGVLILSPTRELAMQTF 143 (262)
T ss_dssp HHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-----GGGCCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-----ccCCceEEEEeCCHHHHHHHH
Confidence 467899999999999999999999999999999999999999999888654221 135778999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhc-cccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~-~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++++++...++..++++||.....+...+..+++|||+|||||.+++... .+.+.++++|||||||+|++|||.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~ 223 (262)
T 3ly5_A 144 GVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 223 (262)
T ss_dssp HHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999775 4789999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 224 ~i~~~~~~------------------------------------------------------------------------ 231 (262)
T 3ly5_A 224 QIIKLLPT------------------------------------------------------------------------ 231 (262)
T ss_dssp HHHHHSCS------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99998852
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCe
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPA 267 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1832)
.+|+|+||||+|+.|+++++.+|.+|.
T Consensus 232 ~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 232 RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 279999999999999999999999775
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=372.24 Aligned_cols=292 Identities=19% Similarity=0.238 Sum_probs=202.1
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEE
Q psy6409 1436 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV 1515 (1832)
Q Consensus 1436 ~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~ 1515 (1832)
++++|+|++++||||||||++|++|++..+.. .++++|||+||++||.|+++.+..+ + +....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~ 66 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHT 66 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEec
Confidence 35688999999999999999999999986643 3678999999999999999988754 2 22111
Q ss_pred CCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc--------ccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCC
Q psy6409 1516 GGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--------YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587 (1832)
Q Consensus 1516 gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~--------~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~ 1587 (1832)
+... +|+||+++.+++..+ ...+.++++|||||||++ +.++...+..+...++
T Consensus 67 ~~~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~---- 127 (440)
T 1yks_A 67 QAFS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR---- 127 (440)
T ss_dssp SCCC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH----
T ss_pred ccce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc----
Confidence 1110 366766554333322 234789999999999987 3333222222222111
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHH
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~ 1667 (1832)
...+|+++||||+++.+..+... ..+.. .+ ...+..... ..++
T Consensus 128 --------------------~~~~~~l~~SAT~~~~~~~~~~~--~~~~~-~~-------------~~~~~~~~~-~~~~ 170 (440)
T 1yks_A 128 --------------------ANESATILMTATPPGTSDEFPHS--NGEIE-DV-------------QTDIPSEPW-NTGH 170 (440)
T ss_dssp --------------------TTSCEEEEECSSCTTCCCSSCCC--SSCEE-EE-------------ECCCCSSCC-SSSC
T ss_pred --------------------cCCceEEEEeCCCCchhhhhhhc--CCCee-Ee-------------eeccChHHH-HHHH
Confidence 13479999999998764422211 11111 11 011111111 1122
Q ss_pred HHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEE
Q psy6409 1668 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMV 1747 (1832)
Q Consensus 1668 ~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~V 1747 (1832)
..+.. ..+++||||++++.|+.++..|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++|
T Consensus 171 ~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~V 244 (440)
T 1yks_A 171 DWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERV 244 (440)
T ss_dssp HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEE
T ss_pred HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEE
Confidence 22332 2578999999999999999999999999999999 4688999999999999999999999999999 9999
Q ss_pred EE-------------------eCCCCCHHHHHHHhcccccC-CCccEEEEEe---eCCChhHHHHHHHHhhcCCCCCCCh
Q psy6409 1748 IN-------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC---TKDDSHLFYDLKQMMISSPVSTCPP 1804 (1832)
Q Consensus 1748 I~-------------------~d~P~s~~~yiQRiGRaGR~-g~~G~ai~~~---~~~d~~~~~~l~~~l~~~~~~~~~~ 1804 (1832)
|+ |++|.+..+|+||+|||||. |..|.|++|+ ++.+...+..+...+.-.+ ..++.
T Consensus 245 I~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~~l~~ 323 (440)
T 1yks_A 245 LDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDN-MEVRG 323 (440)
T ss_dssp EECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTT-SCCGG
T ss_pred EeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccc-ccccc
Confidence 96 89999999999999999997 6899999996 6778888888887654443 45555
Q ss_pred hhc
Q psy6409 1805 ELL 1807 (1832)
Q Consensus 1805 ~L~ 1807 (1832)
.+.
T Consensus 324 ~~~ 326 (440)
T 1yks_A 324 GMV 326 (440)
T ss_dssp GCC
T ss_pred ccc
Confidence 543
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=368.76 Aligned_cols=293 Identities=22% Similarity=0.256 Sum_probs=225.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
.+|+|+|.++++.++.++++|+++|||||||++|++++... +.++|||+|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999999999988642 567999999999999999999884
Q ss_pred cCCCCCe-EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~-v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++. +..++|+... .++|+|+||+++...+.. ....+++|||||||++.+.+|.. ++..+
T Consensus 157 ----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~ 216 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS 216 (472)
T ss_dssp ----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC
T ss_pred ----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc
Confidence 778 8888887652 579999999999765542 23568999999999998877653 44433
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-------------------HHHHHHHHhcCCCcEEEE--c
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-------------------AVERLARSYLRRPATVYI--G 966 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-------------------~v~~~~~~~l~~p~~v~~--~ 966 (1832)
+ ..+++++|||++. ....+...++..+....+ .
T Consensus 217 ~--------------------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 270 (472)
T 2fwr_A 217 I--------------------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVP 270 (472)
T ss_dssp C--------------------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEEC
T ss_pred C--------------------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcC
Confidence 2 2578999999862 122222222322221111 1
Q ss_pred ccCC------------------------CCcceEEEE---------------------EEcchhhHHHHHHHHHHcCCCC
Q psy6409 967 SVGK------------------------PTERIEQIV---------------------YILSEQDKRKKLMEVLNRGVKK 1001 (1832)
Q Consensus 967 ~~~~------------------------~~~~i~q~~---------------------~~~~~~~k~~~L~~~l~~~~~~ 1001 (1832)
.... ....+.+.+ ..+....|...|.+++....+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 350 (472)
T 2fwr_A 271 LAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD 350 (472)
T ss_dssp CCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCC
Confidence 0000 000000000 0122345677888888887788
Q ss_pred CEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCH
Q psy6409 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSI 1081 (1832)
Q Consensus 1002 ~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~ 1081 (1832)
++||||+++..++.+++.|. +..+||+++..+|..+++.|++|.++|||||+++++|||+|++++||+|++|.++
T Consensus 351 k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~ 425 (472)
T 2fwr_A 351 KIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSA 425 (472)
T ss_dssp CBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCC
T ss_pred cEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCH
Confidence 99999999999999999873 6689999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcccccCCCC---cEEEEEecCC
Q psy6409 1082 EDYTHRIGRTGRAGKE---GLAVSFCTKD 1107 (1832)
Q Consensus 1082 ~~yvQr~GRaGR~g~~---G~ai~~~~~~ 1107 (1832)
..|+||+||+||.|.. ..++.|++.+
T Consensus 426 ~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 426 REYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999853 3555566655
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=375.59 Aligned_cols=335 Identities=16% Similarity=0.220 Sum_probs=248.2
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccC
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~-g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~ 1478 (1832)
.++.+|+++++++.+.+.+...+ ..|+++|.++|+.++. +++++++||||||||+ ++|++...... ...
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~-------~~~ 138 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM-------PHL 138 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC-------GGG
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc-------ccC
Confidence 45678999999999999999988 7899999999998885 4679999999999999 56666322111 112
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhc-CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCcee
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~-~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~l 1557 (1832)
.+..++|++|+++|+.|++..+.... ...+..+........ ....+.+|+|+|||++...+... ..+.++++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~ 211 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSC 211 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCE
Confidence 36789999999999999988775542 223332221111100 11236899999999999877664 45889999
Q ss_pred EEEccchh-hhcCCC-hHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1558 IVLDEADR-MIDMGF-EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1558 lViDEaH~-ll~~gf-~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
|||||||. +++..+ ...+..+.... ...+++++|||++. ..+. .++..+
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~--------------------------~~~~iIl~SAT~~~--~~l~-~~~~~~ 262 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRR--------------------------PDLKIIIMSATLDA--EKFQ-RYFNDA 262 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHC--------------------------TTCEEEEEESCSCC--HHHH-HHTTSC
T ss_pred EEecCccccccchHHHHHHHHHHHHhC--------------------------CCceEEEEeccccH--HHHH-HHhcCC
Confidence 99999995 554221 11222222222 34789999999964 3343 455554
Q ss_pred cEEEEcccCCCCcceEEEEEEcchhhH----HHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH-----------cCC
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYILSEQDK----RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-----------LGY 1700 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~~~~~k----~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~-----------~~~ 1700 (1832)
..+.+.... ..+.+.+........ ...+..++.....+++||||+++..++.++..|.. .++
T Consensus 263 ~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 263 PLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp CEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred CcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 444443322 234444433333322 23444455555678999999999999999999975 478
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh-----CCCCcEEEEcccccccCCCCCCCEEEEeCC------------------CCCHH
Q psy6409 1701 NACTLHGGKGQEQRELALNSLK-----GGSKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSIE 1757 (1832)
Q Consensus 1701 ~v~~lHg~ls~~~R~~il~~F~-----~g~~~VLVATdvl~~GIDip~v~~VI~~d~------------------P~s~~ 1757 (1832)
.+..+||+|++.+|..+++.|+ +|..+|||||+++++|||||+|.+||++++ |.|.+
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~ 419 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKA 419 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHH
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHH
Confidence 8999999999999999999999 999999999999999999999999999888 89999
Q ss_pred HHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1758 DYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1758 ~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|+||+|||||. ..|.|++|+++.+.
T Consensus 420 s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 420 SAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999 78999999986543
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=373.48 Aligned_cols=280 Identities=22% Similarity=0.234 Sum_probs=214.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcC
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 1505 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~ 1505 (1832)
+.++|.++++.+..+++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 44555556666668889999999999999999998873 25589999999999999998877653
Q ss_pred CCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCC
Q psy6409 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585 (1832)
Q Consensus 1506 ~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~ 1585 (1832)
+..+...+|+.. +..+++|+|+||++| +....+.+.++++||||||| +++.+|...+..|+..++..
T Consensus 282 --g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 282 --GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp --SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred --CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 455666777754 345789999999997 45667788899999999997 67778888888888887621
Q ss_pred CCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHH
Q psy6409 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665 (1832)
Q Consensus 1586 ~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~ 1665 (1832)
....++++|||++..+. ...|....+..... ..+ ........
T Consensus 349 -----------------------~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i----~~~~~~~~--- 390 (666)
T 3o8b_A 349 -----------------------GARLVVLATATPPGSVT------VPHPNIEEVALSNT--GEI----PFYGKAIP--- 390 (666)
T ss_dssp -----------------------TCSEEEEEESSCTTCCC------CCCTTEEEEECBSC--SSE----EETTEEEC---
T ss_pred -----------------------CCceEEEECCCCCcccc------cCCcceEEEeeccc--chh----HHHHhhhh---
Confidence 12236778999988421 12222222111110 001 11100000
Q ss_pred HHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCC
Q psy6409 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745 (1832)
Q Consensus 1666 l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~ 1745 (1832)
+.....+++||||++++.|+.++..|...++.+..+||+|++.+ |.++..+|||||+++++|||+| |+
T Consensus 391 ----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ----IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ----GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ----hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 12235789999999999999999999999999999999999875 5667779999999999999997 99
Q ss_pred EEE----------EeC-----------CCCCHHHHHHHhcccccCCCccEEEEEeeCCChhH
Q psy6409 1746 MVI----------NYD-----------MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786 (1832)
Q Consensus 1746 ~VI----------~~d-----------~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~ 1786 (1832)
+|| ||| +|.+.++|+||+||||| |..|. ++|+++.+...
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 988 777 89999999999999999 99999 99999886544
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=390.75 Aligned_cols=307 Identities=19% Similarity=0.218 Sum_probs=215.3
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1417 IIEKIGYA-----EPTPIQR-----QAIPIGL------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1417 ~l~~~g~~-----~ptpiQ~-----~ai~~il------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
+|...||. .|+|+|. ++||.++ .|+|+|++||||||||++|++|++..+.. .+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~ 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KR 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TT
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 34455666 8999999 9999988 89999999999999999999999976543 46
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+++|||+||++||.|+++.+..+ ++. ...+.... .-..+.-+-+.+.+.+...+... ..+.++++|||
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvVi 338 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVM 338 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEE
T ss_pred CcEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEE
Confidence 78999999999999999888765 222 11111000 00111223344555554444332 46889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||++ +..+...+..+...++ ...+|+++||||++..+..+... ..|. ..+
T Consensus 339 DEaH~~-~~~~~~~~~~l~~~~~------------------------~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v 390 (673)
T 2wv9_A 339 DEAHFT-DPASIAARGYIATRVE------------------------AGEAAAIFMTATPPGTSDPFPDT--NSPV-HDV 390 (673)
T ss_dssp ESTTCC-CHHHHHHHHHHHHHHH------------------------TTSCEEEEECSSCTTCCCSSCCC--SSCE-EEE
T ss_pred eCCccc-CccHHHHHHHHHHhcc------------------------ccCCcEEEEcCCCChhhhhhccc--CCce-EEE
Confidence 999987 2111122222222110 13579999999998764322110 1111 111
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
.. ...... ...++..+.. ..+++||||++++.|+.++..|...++.+..+||. +|..+++.
T Consensus 391 ~~-------------~~~~~~-~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~ 451 (673)
T 2wv9_A 391 SS-------------EIPDRA-WSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPK 451 (673)
T ss_dssp EC-------------CCCSSC-CSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGG
T ss_pred ee-------------ecCHHH-HHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHH
Confidence 10 011111 1112223332 46799999999999999999999999999999994 79999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEE--------------------eCCCCCHHHHHHHhcccccC-CCccEEEEEe
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVIN--------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC 1779 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~--------------------~d~P~s~~~yiQRiGRaGR~-g~~G~ai~~~ 1779 (1832)
|++|+++|||||+++++|||+| +++||+ |++|.+.++|+||+|||||. |+.|.|++|+
T Consensus 452 F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 452 CKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp GGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred HHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999999999999999999999 999998 67999999999999999998 7899999996
Q ss_pred ---eCCChhHHHHHHHHh
Q psy6409 1780 ---TKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1780 ---~~~d~~~~~~l~~~l 1794 (1832)
++.|..++..+...+
T Consensus 531 ~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 531 GGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp SCCCCCCTTBHHHHHHHH
T ss_pred ecCChhHHHHHHHHHHHH
Confidence 566777777666544
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=329.06 Aligned_cols=246 Identities=39% Similarity=0.647 Sum_probs=204.5
Q ss_pred hhccceecCCCCCC--cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHH
Q psy6409 712 EDYSITIKGGKVPD--PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789 (1832)
Q Consensus 712 ~~~~i~~~~~~~p~--p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~ 789 (1832)
+++.+.+.|...|. ++.+|++++|++.++++|...||..|+|+|.++++.++.|+|++++||||||||++|++|++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~ 84 (253)
T 1wrb_A 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 84 (253)
T ss_dssp CCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 34567788998888 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHH
Q psy6409 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869 (1832)
Q Consensus 790 i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~ 869 (1832)
+..............++++|||+||++||.|+.+.+.+++...++.+..++||.....+...+..+++|+|+||++|.++
T Consensus 85 l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~ 164 (253)
T 1wrb_A 85 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDF 164 (253)
T ss_dssp HHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHH
T ss_pred HHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 75422110001123467999999999999999999999988889999999999998888778888899999999999999
Q ss_pred HHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHH
Q psy6409 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949 (1832)
Q Consensus 870 l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v 949 (1832)
+.+..+.+..+++|||||||+|++++|++.+..|+..+... .....|+++||||+|+.+
T Consensus 165 l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 165 IEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP---------------------SGINRQTLMFSATFPKEI 223 (253)
T ss_dssp HHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC---------------------CGGGCEEEEEESSCCHHH
T ss_pred HHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCC---------------------CCCCcEEEEEEEeCCHHH
Confidence 99888889999999999999999999999999999865310 112479999999999999
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEEE
Q psy6409 950 ERLARSYLRRPATVYIGSVGKPTERIEQI 978 (1832)
Q Consensus 950 ~~~~~~~l~~p~~v~~~~~~~~~~~i~q~ 978 (1832)
..++..++.+|..+.++........+.|.
T Consensus 224 ~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 224 QKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp HHHHHHHCSSCEEEEEC------------
T ss_pred HHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 99999999999999888766665556553
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=332.33 Aligned_cols=191 Identities=32% Similarity=0.547 Sum_probs=162.2
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|+.
T Consensus 45 l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 115 (237)
T 3bor_A 45 IYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---------FKETQALVLAPTRELAQQIQ 115 (237)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCceEEEEECcHHHHHHHH
Confidence 467899999999999999999999999999999999999999999766321 35678999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcC-ccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~-~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++++++...++.+.+++||.....+...+..+ ++|+|+|||+|.+++..+.+.+.++++|||||||+|+++||..++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 195 (237)
T 3bor_A 116 KVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIY 195 (237)
T ss_dssp HHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHH
Confidence 999999998899999999999998888888776 9999999999999999998999999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|+..+|.
T Consensus 196 ~i~~~~~~------------------------------------------------------------------------ 203 (237)
T 3bor_A 196 EIFQKLNT------------------------------------------------------------------------ 203 (237)
T ss_dssp HHHHHSCT------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99887641
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
.+|+++||||+|+.+++++..||++|+.|.|+.
T Consensus 204 ~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 204 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp TCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred CCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 179999999999999999999999999998764
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=368.44 Aligned_cols=272 Identities=19% Similarity=0.223 Sum_probs=197.2
Q ss_pred HHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEE
Q psy6409 760 PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLV 839 (1832)
Q Consensus 760 ~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~ 839 (1832)
..+..|+|+|++||||||||++|++|++..+.. .++++||++||++||.|+++.+. |..+...
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 345568999999999999999999999987632 36789999999999999999886 2333322
Q ss_pred EcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh-----hhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 840 VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-----MIDMGFEPDVQKILEYMPVTNLKP 914 (1832)
Q Consensus 840 ~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~-----l~d~gf~~~i~~Il~~l~~~~~~~ 914 (1832)
.+..... -..+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+.
T Consensus 79 ~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------------- 139 (459)
T 2z83_A 79 TSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------------- 139 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-------------
T ss_pred ecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-------------
Confidence 2221110 1224567788999887766654 4688999999999997 33322211110
Q ss_pred CCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHH
Q psy6409 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 994 (1832)
Q Consensus 915 ~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~ 994 (1832)
.....|+++||||+|..+..+... ..|........ +... ...+...
T Consensus 140 -----------------~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~~--~~~~-------------~~~~~~~ 185 (459)
T 2z83_A 140 -----------------ELGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDEI--PDRA-------------WSSGYEW 185 (459)
T ss_dssp -----------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECCC--CSSC-------------CSSCCHH
T ss_pred -----------------ccCCccEEEEEcCCCcchhhhccC--CCCeEEecccC--Ccch-------------hHHHHHH
Confidence 113579999999998765332211 23332211100 0000 0111222
Q ss_pred HHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE
Q psy6409 995 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN 1074 (1832)
Q Consensus 995 l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~ 1074 (1832)
+.. ..+++||||+++..|+.+++.|...++.+..+||. +|..+++.|++|+++|||||+++++|||||+ ++||+
T Consensus 186 l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 186 ITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp HHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEE
T ss_pred HHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEE
Confidence 332 36789999999999999999999999999999995 7889999999999999999999999999999 99999
Q ss_pred --------------------cCCCCCHhHHHHHhcccccCCC-CcEEEEEecCC
Q psy6409 1075 --------------------YDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1107 (1832)
Q Consensus 1075 --------------------~d~p~s~~~yvQr~GRaGR~g~-~G~ai~~~~~~ 1107 (1832)
|++|.|..+|+||+|||||.|. .|.|++|++..
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999986
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=327.46 Aligned_cols=194 Identities=37% Similarity=0.598 Sum_probs=173.5
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+...... ...++.+|||+||||||.|+.
T Consensus 40 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~-----~~~~~~~lil~Pt~~L~~q~~ 114 (236)
T 2pl3_A 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-----STDGLGVLIISPTRELAYQTF 114 (236)
T ss_dssp HHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC-----GGGCCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc-----ccCCceEEEEeCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999887653211 135788999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhc-cccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~-~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++++++...++.+++++||.+...+...+ .+++|+|+|||+|.+++..+ .+.+.++++||+||||+|++|||..++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 193 (236)
T 2pl3_A 115 EVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMN 193 (236)
T ss_dssp HHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHH
T ss_pred HHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHH
Confidence 999999998899999999999988877776 58999999999999999765 5788999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 194 ~i~~~~~~------------------------------------------------------------------------ 201 (236)
T 2pl3_A 194 AVIENLPK------------------------------------------------------------------------ 201 (236)
T ss_dssp HHHHTSCT------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99987751
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
-+|+++||||+|+.+++++..||.+|+.|.|+.
T Consensus 202 ~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 202 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 179999999999999999999999999998875
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=327.04 Aligned_cols=189 Identities=30% Similarity=0.550 Sum_probs=171.9
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|+++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|++
T Consensus 39 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 109 (230)
T 2oxc_A 39 LRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------NLSTQILILAPTREIAVQIH 109 (230)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCceEEEEeCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999766432 34678999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCC-ChHHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDV 159 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~g-f~~~~ 159 (1832)
+++++++... ++++.+++||.....+...+. +++|+|+|||+|.+++..+.+.+.++++||+||||+|+++| |.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 188 (230)
T 2oxc_A 110 SVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQI 188 (230)
T ss_dssp HHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHH
T ss_pred HHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHH
Confidence 9999998765 799999999999888877764 79999999999999999998899999999999999999999 99999
Q ss_pred HHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccc
Q psy6409 160 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239 (1832)
Q Consensus 160 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1832)
..|++.+|.
T Consensus 189 ~~i~~~~~~----------------------------------------------------------------------- 197 (230)
T 2oxc_A 189 NWIYSSLPA----------------------------------------------------------------------- 197 (230)
T ss_dssp HHHHHHSCS-----------------------------------------------------------------------
T ss_pred HHHHHhCCC-----------------------------------------------------------------------
Confidence 999987751
Q ss_pred cceeEEEEEccCcHHHHHHHHHHhcCCeEEEEc
Q psy6409 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIG 272 (1832)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1832)
.+|+++||||+|+.+++++..|+.+|+.|.+.
T Consensus 198 -~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 198 -SKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp -SCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred -CCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 27999999999999999999999999988764
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=326.76 Aligned_cols=192 Identities=36% Similarity=0.548 Sum_probs=174.8
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|++
T Consensus 19 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 89 (219)
T 1q0u_A 19 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEVQAVITAPTRELATQIY 89 (219)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---------cCCceEEEEcCcHHHHHHHH
Confidence 567899999999999999999999999999999999999999999766431 34678999999999999999
Q ss_pred HHHHhcCCCc----cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChH
Q psy6409 82 EETNKFGTPL----GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 157 (1832)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~ 157 (1832)
+++++++... ++...+++||.+...+...+..+++|+|+|||+|.+++..+.+.+.++++||+||||+|+++||..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~ 169 (219)
T 1q0u_A 90 HETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFIT 169 (219)
T ss_dssp HHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHH
Confidence 9999998776 788999999999988888888899999999999999999998899999999999999999999999
Q ss_pred HHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccc
Q psy6409 158 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237 (1832)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1832)
++..|++.+|.
T Consensus 170 ~l~~i~~~~~~--------------------------------------------------------------------- 180 (219)
T 1q0u_A 170 DVDQIAARMPK--------------------------------------------------------------------- 180 (219)
T ss_dssp HHHHHHHTSCT---------------------------------------------------------------------
T ss_pred HHHHHHHhCCc---------------------------------------------------------------------
Confidence 99999887751
Q ss_pred cccceeEEEEEccCcHHHHHHHHHHhcCCeEEEEccc
Q psy6409 238 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 274 (1832)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1832)
-+|+++||||+|+.+++++..|+.+|+.+.++-.
T Consensus 181 ---~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 181 ---DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp ---TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred ---ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 1799999999999999999999999999887644
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=362.43 Aligned_cols=293 Identities=22% Similarity=0.266 Sum_probs=224.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.++++.++.++++++++|||+|||++|++++... +..+|||+|+++|+.|+.+.+.+|
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 7999999999999999999999999999999999988642 457999999999999999999884
Q ss_pred CCCCCe-EEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1505 TPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1505 ~~~g~~-v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
++. +..+.|+... .++|+|+||+.+...+.. ...++++|||||||++.+.+|.. ++..++
T Consensus 157 ---~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~~ 217 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI 217 (472)
T ss_dssp ---CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTCC
T ss_pred ---CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhcC
Confidence 677 7777777653 478999999998766542 23568999999999998776653 444432
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH-------------------HHHHHHHhcCCCcEE--EEcc
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-------------------VERLARSYLRRPATV--YIGS 1642 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~-------------------~~~~~~~~l~~p~~v--~i~~ 1642 (1832)
..+++++|||+... ...+...++..+... .+..
T Consensus 218 --------------------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 271 (472)
T 2fwr_A 218 --------------------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPL 271 (472)
T ss_dssp --------------------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECC
T ss_pred --------------------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCC
Confidence 35789999999731 222222222222211 1100
Q ss_pred cCC------------------------CCcceEEEE---------------------EEcchhhHHHHHHHHHHhCCCCc
Q psy6409 1643 VGK------------------------PTERIEQIV---------------------YILSEQDKRKKLMEVLNRGVKKP 1677 (1832)
Q Consensus 1643 ~~~------------------------~~~~i~q~~---------------------~~~~~~~k~~~l~~~l~~~~~~~ 1677 (1832)
... ....+.+.+ ..+....|...+.+++......+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k 351 (472)
T 2fwr_A 272 AEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDK 351 (472)
T ss_dssp CHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCc
Confidence 000 000000000 00123456678888888877889
Q ss_pred EEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHH
Q psy6409 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1757 (1832)
Q Consensus 1678 vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~ 1757 (1832)
+||||+++..++.++..|. +..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.|+.
T Consensus 352 ~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~ 426 (472)
T 2fwr_A 352 IIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAR 426 (472)
T ss_dssp BCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCH
T ss_pred EEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHH
Confidence 9999999999999999873 66799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCc---cEEEEEeeCCC
Q psy6409 1758 DYTHRIGRTGRAGKE---GLAVSFCTKDD 1783 (1832)
Q Consensus 1758 ~yiQRiGRaGR~g~~---G~ai~~~~~~d 1783 (1832)
.|+||+||+||.|+. ..++.|+..+.
T Consensus 427 ~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 427 EYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp HHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred HHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999998843 34555676653
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=316.09 Aligned_cols=187 Identities=33% Similarity=0.609 Sum_probs=173.0
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|+|+|.++||.++.|+|++++||||||||++|++|++..+.. ...++.+|||+||++||.|++
T Consensus 18 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~~~~~~~lil~Pt~~L~~q~~ 88 (206)
T 1vec_A 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---------KKDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------TSCSCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---------cCCCeeEEEEeCcHHHHHHHH
Confidence 56799999999999999999999999999999999999999999976532 135678999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+.+++++... ++.+.+++||.....+...+..+++|+|+|||+|.+++..+.+.+.++++||+||||+|++++|...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 168 (206)
T 1vec_A 89 QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIME 168 (206)
T ss_dssp HHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHH
Confidence 9999998877 788999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|+..+|.
T Consensus 169 ~i~~~~~~------------------------------------------------------------------------ 176 (206)
T 1vec_A 169 DIILTLPK------------------------------------------------------------------------ 176 (206)
T ss_dssp HHHHHSCT------------------------------------------------------------------------
T ss_pred HHHHhCCc------------------------------------------------------------------------
Confidence 99887751
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEE
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATV 269 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1832)
.+|+++||||+|+.+++++..||.+|+.|
T Consensus 177 ~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 17999999999999999999999999876
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=327.91 Aligned_cols=195 Identities=34% Similarity=0.517 Sum_probs=169.9
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||.+|||+|.+|||.++.|+|++++||||||||+||++|++..+... ...++.+|||+||||||.|++
T Consensus 44 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~~~~~~~lil~Pt~~L~~q~~ 115 (245)
T 3dkp_A 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP--------ANKGFRALIISPTRELASQIH 115 (245)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC--------CSSSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc--------ccCCceEEEEeCCHHHHHHHH
Confidence 467899999999999999999999999999999999999999999877432 235778999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHh-HHhhcCccEEEcCchhhHHHhhhc--cccCCcceEEEEcccchhhc---CCC
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQG-FRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEADRMID---MGF 155 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~-~~l~~~~~Ilv~TPgrl~~~~~~~--~~~l~~~~~~vlDEad~~l~---~gf 155 (1832)
+++++++...++...+++||.....+. .....+++|||+|||||.+++..+ .+.+.++++||+||||+|++ +||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~ 195 (245)
T 3dkp_A 116 RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGF 195 (245)
T ss_dssp HHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CH
T ss_pred HHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccH
Confidence 999999999999999888887655443 334578999999999999999876 57899999999999999999 579
Q ss_pred hHHHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhc
Q psy6409 156 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANY 235 (1832)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1832)
.+++..|+..++.
T Consensus 196 ~~~~~~i~~~~~~------------------------------------------------------------------- 208 (245)
T 3dkp_A 196 RDQLASIFLACTS------------------------------------------------------------------- 208 (245)
T ss_dssp HHHHHHHHHHCCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCC-------------------------------------------------------------------
Confidence 9999999876631
Q ss_pred cccccceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcccC
Q psy6409 236 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 275 (1832)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1832)
...|+++||||||+.|++++..||++|+.|.||+.+
T Consensus 209 ----~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 244 (245)
T 3dkp_A 209 ----HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244 (245)
T ss_dssp ----TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC--
T ss_pred ----CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 127899999999999999999999999999999864
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=314.49 Aligned_cols=218 Identities=42% Similarity=0.682 Sum_probs=187.8
Q ss_pred cCCCCCCcccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhh
Q psy6409 719 KGGKVPDPVRNWKE-ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797 (1832)
Q Consensus 719 ~~~~~p~p~~~f~~-~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~ 797 (1832)
.+..+|.|+.+|.+ +++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 34578999999999 7999999999999999999999999999999999999999999999999999999877432111
Q ss_pred hccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccccc
Q psy6409 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 798 ~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
.....++++||++||++||.|+.+.+.++. ..++.+..++||.....+...+..+++|+|+||++|.+++......+
T Consensus 89 --~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 89 --REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp ------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC
T ss_pred --hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc
Confidence 112367899999999999999999999986 45889999999998888877888899999999999999998888889
Q ss_pred CCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 878 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
.++++|||||||++++++|.+.+..++..++ ...|+++||||+|+.+..++..++
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVR-------------------------PDRQTVMTSATWPDTVRQLALSYL 220 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSC-------------------------SSCEEEEEESCCCHHHHHHHHTTC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCC-------------------------cCCeEEEEEeeCCHHHHHHHHHHC
Confidence 9999999999999999999999999998874 247999999999999999999999
Q ss_pred CCCcEEEE
Q psy6409 958 RRPATVYI 965 (1832)
Q Consensus 958 ~~p~~v~~ 965 (1832)
.+|..+++
T Consensus 221 ~~p~~i~v 228 (228)
T 3iuy_A 221 KDPMIVYV 228 (228)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEeC
Confidence 99987753
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=359.09 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=196.3
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEE
Q psy6409 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 1513 (1832)
Q Consensus 1434 i~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~ 1513 (1832)
..++..++++|++||||||||++|++|++..+.. .++++||++||++||.|+++.+.. ..+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~ 77 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALRG------LPVRY 77 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTTT------SCEEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhcC------ceEeE
Confidence 3345678999999999999999999999976643 367899999999999999988863 22322
Q ss_pred EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh-----hcCCChHHHHHHHHhCCCCCCC
Q psy6409 1514 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-----IDMGFEPDVQKILEYMPVTNLK 1588 (1832)
Q Consensus 1514 l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l-----l~~gf~~~l~~Il~~l~~~~~~ 1588 (1832)
..+..... -..+..+.++|.+.+...+... ..+.++++|||||||++ +..+|...+.
T Consensus 78 ~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------------ 139 (459)
T 2z83_A 78 QTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------------ 139 (459)
T ss_dssp CC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH------------
T ss_pred EecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh------------
Confidence 22211110 1224557788998887666543 46889999999999973 3322211110
Q ss_pred CCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHH
Q psy6409 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668 (1832)
Q Consensus 1589 ~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~ 1668 (1832)
.....|+++||||++..+..+... ..|...... ..+.. +...+..
T Consensus 140 ------------------~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~--~~~~~-------------~~~~~~~ 184 (459)
T 2z83_A 140 ------------------ELGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD--EIPDR-------------AWSSGYE 184 (459)
T ss_dssp ------------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--CCCSS-------------CCSSCCH
T ss_pred ------------------ccCCccEEEEEcCCCcchhhhccC--CCCeEEecc--cCCcc-------------hhHHHHH
Confidence 013579999999998764322111 222222110 00000 0011122
Q ss_pred HHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEE
Q psy6409 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI 1748 (1832)
Q Consensus 1669 ~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI 1748 (1832)
++... .+++||||+++..|+.++..|...++.+..+||. +|..+++.|++|+++|||||+++++|||+|+ ++||
T Consensus 185 ~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI 258 (459)
T 2z83_A 185 WITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVI 258 (459)
T ss_dssp HHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEE
T ss_pred HHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEE
Confidence 33333 6789999999999999999999999999999995 7888999999999999999999999999999 9999
Q ss_pred E--------------------eCCCCCHHHHHHHhcccccCCC-ccEEEEEeeCC
Q psy6409 1749 N--------------------YDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1782 (1832)
Q Consensus 1749 ~--------------------~d~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~~~ 1782 (1832)
+ |++|.|..+|+||+|||||.|. .|.|++|+.+.
T Consensus 259 ~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 259 DCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9 7799999999999999999997 89999999886
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=348.22 Aligned_cols=270 Identities=18% Similarity=0.157 Sum_probs=193.1
Q ss_pred cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
.|+|+|++||||||||++|++|++..+.. .+++++||+||++||.|+.+.+. ++.+...+|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCc
Confidence 37899999999999999999999965532 46789999999999999988775 44555555543
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHH
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 923 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~ 923 (1832)
.. .-..+..+.+.|.+.+...+.. ...+.++++|||||||++ +.++......+....
T Consensus 64 ~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~---------------- 120 (431)
T 2v6i_A 64 QS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV---------------- 120 (431)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH----------------
T ss_pred cc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh----------------
Confidence 21 1122456778899988766665 456899999999999986 322222322222211
Q ss_pred HHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCE
Q psy6409 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003 (1832)
Q Consensus 924 ~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~v 1003 (1832)
.....|+++||||+++.+..+... ..|....... . ...+...+++.+... .+++
T Consensus 121 --------~~~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~~--------------~-~~~~~~~~~~~l~~~-~~~~ 174 (431)
T 2v6i_A 121 --------SMGDAGAIFMTATPPGTTEAFPPS--NSPIIDEETR--------------I-PDKAWNSGYEWITEF-DGRT 174 (431)
T ss_dssp --------HTTSCEEEEEESSCTTCCCSSCCC--SSCCEEEECC--------------C-CSSCCSSCCHHHHSC-SSCE
T ss_pred --------hCCCCcEEEEeCCCCcchhhhcCC--CCceeecccc--------------C-CHHHHHHHHHHHHcC-CCCE
Confidence 123589999999998753321110 1121111100 0 011112233444433 5689
Q ss_pred EEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCE------------
Q psy6409 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM------------ 1071 (1832)
Q Consensus 1004 IVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~------------ 1071 (1832)
||||++++.|+.+++.|...++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+
T Consensus 175 lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~ 249 (431)
T 2v6i_A 175 VWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPIL 249 (431)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcccccee
Confidence 999999999999999999999999999997 688899999999999999999999999999 654
Q ss_pred -----EEEcCCCCCHhHHHHHhcccccCCC-CcEEEEEe
Q psy6409 1072 -----VINYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFC 1104 (1832)
Q Consensus 1072 -----VI~~d~p~s~~~yvQr~GRaGR~g~-~G~ai~~~ 1104 (1832)
||+++.|.+..+|+||+|||||.|. .|.++++.
T Consensus 250 d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 45666655
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.30 Aligned_cols=192 Identities=40% Similarity=0.656 Sum_probs=174.2
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||.+|+|+|.++||.++.|+|++++||||||||++|++|++..+.... ....++.+|||+|||+|+.|++
T Consensus 16 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~~~~lil~P~~~L~~q~~ 89 (207)
T 2gxq_A 16 LHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------ERGRKPRALVLTPTRELALQVA 89 (207)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC------CTTCCCSEEEECSSHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc------ccCCCCcEEEEECCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999998775421 1235789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+.+++++.. ++..+++||.....+...+..+++|+|+|||+|.+++..+.+.+.++++||+||||+|+++||...+..
T Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 167 (207)
T 2gxq_A 90 SELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEA 167 (207)
T ss_dssp HHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHH
Confidence 999999765 678899999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|+..+|. .
T Consensus 168 i~~~~~~------------------------------------------------------------------------~ 175 (207)
T 2gxq_A 168 LLSATPP------------------------------------------------------------------------S 175 (207)
T ss_dssp HHHTSCT------------------------------------------------------------------------T
T ss_pred HHHhCCc------------------------------------------------------------------------c
Confidence 9886641 1
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
+|+++||||+|+.++++++.|+.+|..|.|++
T Consensus 176 ~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 207 (207)
T 2gxq_A 176 RQTLLFSATLPSWAKRLAERYMKNPVLINVIK 207 (207)
T ss_dssp SEEEEECSSCCHHHHHHHHHHCSSCEEEECC-
T ss_pred CeEEEEEEecCHHHHHHHHHHcCCCeEEEcCC
Confidence 79999999999999999999999999998763
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-33 Score=316.80 Aligned_cols=193 Identities=32% Similarity=0.531 Sum_probs=164.0
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|+|+|.+|||.++.|+|++++||||||||++|++|++..+... ..++.+|||+|||+||.|++
T Consensus 29 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 29 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------CCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------CCCceEEEEECCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999876332 35678999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++...++...+++||.+...+...+.. ++|+|+|||+|.+++..+.+.+.++++||+||||+|+++||...+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~ 178 (224)
T 1qde_A 100 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 178 (224)
T ss_dssp HHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHH
Confidence 99999999889999999999998888877765 99999999999999999988999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|+..+|. .
T Consensus 179 i~~~~~~------------------------------------------------------------------------~ 186 (224)
T 1qde_A 179 IFTLLPP------------------------------------------------------------------------T 186 (224)
T ss_dssp HHHHSCT------------------------------------------------------------------------T
T ss_pred HHHhCCc------------------------------------------------------------------------c
Confidence 9887651 1
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcccCC
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 276 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (1832)
+|+++||||+|+.+++++..|+.+|+.|.|.....
T Consensus 187 ~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 221 (224)
T 1qde_A 187 TQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL 221 (224)
T ss_dssp CEEEEEESSCCHHHHHHHHHHCSSCEEEC------
T ss_pred CeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 79999999999999999999999999998876544
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-32 Score=323.96 Aligned_cols=216 Identities=27% Similarity=0.486 Sum_probs=187.6
Q ss_pred ccceecCCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHH
Q psy6409 714 YSITIKGGKVPDP---VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLV 788 (1832)
Q Consensus 714 ~~i~~~~~~~p~p---~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~ 788 (1832)
..+.+.+.+.+.| +.+|++++|++.++++|..+||..|||+|.++||.++.| +|+|++||||||||++|++|++.
T Consensus 75 ~~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~ 154 (300)
T 3fmo_B 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (300)
T ss_dssp SCEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHH
Confidence 3455556655554 578999999999999999999999999999999999997 99999999999999999999998
Q ss_pred HHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH
Q psy6409 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 867 (1832)
Q Consensus 789 ~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~ 867 (1832)
.+.. ...++++|||+||++||.|++..+..++..+ ++.+..++||....... ..+++|+|||||+|+
T Consensus 155 ~l~~---------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~ 222 (300)
T 3fmo_B 155 QVEP---------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVL 222 (300)
T ss_dssp HCCT---------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHH
T ss_pred hhhc---------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHH
Confidence 7532 2457899999999999999999999998765 68899999987754332 457899999999999
Q ss_pred HHHHc-cccccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecC
Q psy6409 868 DVLEN-RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 945 (1832)
Q Consensus 868 d~l~~-~~~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl 945 (1832)
+++.+ +.+.++++++|||||||+|++ .+|...+..|+..++ ..+|+++||||+
T Consensus 223 ~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~-------------------------~~~q~i~~SAT~ 277 (300)
T 3fmo_B 223 DWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATF 277 (300)
T ss_dssp HHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC-------------------------TTCEEEEEESCC
T ss_pred HHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC-------------------------CCCEEEEEeccC
Confidence 99966 566789999999999999998 789999999988775 247999999999
Q ss_pred ChHHHHHHHHhcCCCcEEEEc
Q psy6409 946 PPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 946 ~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|+.+..++..++.+|..+.+.
T Consensus 278 ~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 278 EDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CHHHHHHHHHHSSSCEEEEEC
T ss_pred CHHHHHHHHHHCCCCeEEEec
Confidence 999999999999999988764
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-32 Score=314.81 Aligned_cols=230 Identities=32% Similarity=0.527 Sum_probs=198.4
Q ss_pred HHHHHhhccceecCCCCCCcccCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 707 WRIFREDYSITIKGGKVPDPVRNWKEA----SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 707 ~~~~~~~~~i~~~~~~~p~p~~~f~~~----~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
...+++.+++.+.|.+.|.|+.+|+++ +|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|
T Consensus 4 ~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 4 INFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 456788889999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH-HHHhcCCceeec
Q psy6409 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG-FRLRLGCEIVIA 861 (1832)
Q Consensus 783 llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~-~~l~~~~~IlV~ 861 (1832)
++|++..+.. ....++++||++||++||.|+++.+.+++...++.+..++|+....... .....+++|+|+
T Consensus 84 ~l~~l~~l~~--------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 155 (245)
T 3dkp_A 84 SIPILMQLKQ--------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155 (245)
T ss_dssp HHHHHHHHCS--------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEE
T ss_pred HHHHHHHHhh--------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEE
Confidence 9999987632 1235779999999999999999999999998899988888775433321 122356899999
Q ss_pred CHHHHHHHHHcc--ccccCCceeEEEecchhhhc---CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccc
Q psy6409 862 TPGRLIDVLENR--YLVLNQCTYIVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 936 (1832)
Q Consensus 862 TP~rL~d~l~~~--~~~l~~~~~lViDEaH~l~d---~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 936 (1832)
||++|.+++.+. .+.+.++++|||||||+|++ .+|...+..++..+.. ...
T Consensus 156 Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~ 211 (245)
T 3dkp_A 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------HKV 211 (245)
T ss_dssp CHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC------------------------TTC
T ss_pred CHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC------------------------CCc
Confidence 999999999876 46788999999999999998 5688888888766531 247
Q ss_pred eEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 937 q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|+++||||+|+.+..++..++.+|..+.++..
T Consensus 212 ~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 212 RRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 89999999999999999999999999988754
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=354.40 Aligned_cols=285 Identities=20% Similarity=0.174 Sum_probs=207.7
Q ss_pred HHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEE
Q psy6409 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 838 (1832)
Q Consensus 759 i~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~ 838 (1832)
....++|++++++||||||||+. ++..+.. .+.++|++|||+||.|+++.+... |+.+..
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~------------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFS------------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHH------------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh------------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 34556899999999999999983 3333321 123599999999999999999886 778899
Q ss_pred EEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCch
Q psy6409 839 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 918 (1832)
Q Consensus 839 ~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~ 918 (1832)
++|+...... .-....+++++|++.+ .....+++|||||||+|++.+|+..+..++..++.
T Consensus 209 ltG~~~~iv~--TpGr~~~il~~T~e~~--------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--------- 269 (677)
T 3rc3_A 209 VTGEERVTVQ--PNGKQASHVSCTVEMC--------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--------- 269 (677)
T ss_dssp ECSSCEECCS--TTCCCCSEEEEEGGGC--------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE---------
T ss_pred EECCeeEEec--CCCcccceeEecHhHh--------hhcccCCEEEEecceecCCccchHHHHHHHHccCc---------
Confidence 9998663100 0001255666666544 13567899999999999999999999998887741
Q ss_pred hHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC
Q psy6409 919 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 998 (1832)
Q Consensus 919 ~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~ 998 (1832)
...+++++|||.+ .+..++... ..+..+... .... .... ... . +..+...
T Consensus 270 ---------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~--~r~~-~l~~---~~~---~----l~~l~~~ 319 (677)
T 3rc3_A 270 ---------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDY--KRLT-PISV---LDH---A----LESLDNL 319 (677)
T ss_dssp ---------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEEC--CCSS-CEEE---CSS---C----CCSGGGC
T ss_pred ---------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEe--eecc-hHHH---HHH---H----HHHHHhc
Confidence 3478999999964 355454443 233333211 1111 1110 000 0 0011111
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC--CCCcEEEecccccccCCCcCcCEEEEcC
Q psy6409 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYD 1076 (1832)
Q Consensus 999 ~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~--G~~~VLVaTdv~~rGlDip~v~~VI~~d 1076 (1832)
....||||++++.|+.+++.|...++.+.++||+|++.+|..+++.|++ |.++|||||+++++|||+ +|++||+++
T Consensus 320 -~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~ 397 (677)
T 3rc3_A 320 -RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYS 397 (677)
T ss_dssp -CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESC
T ss_pred -CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECC
Confidence 3456899999999999999999999999999999999999999999999 999999999999999999 899999999
Q ss_pred C--------------CCCHhHHHHHhcccccCCCC---cEEEEEecCCCchHHHHH
Q psy6409 1077 M--------------AKSIEDYTHRIGRTGRAGKE---GLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1077 ~--------------p~s~~~yvQr~GRaGR~g~~---G~ai~~~~~~d~~~~~~l 1115 (1832)
+ |.+..+|+||+|||||.|.. |.|+.++. ++...+..+
T Consensus 398 ~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~ 452 (677)
T 3rc3_A 398 LIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEI 452 (677)
T ss_dssp SBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHH
T ss_pred ccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHH
Confidence 9 77999999999999999964 66665544 443344333
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=310.26 Aligned_cols=214 Identities=31% Similarity=0.516 Sum_probs=178.8
Q ss_pred cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhh
Q psy6409 719 KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798 (1832)
Q Consensus 719 ~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~ 798 (1832)
...+.|.++.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------ 94 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------ 94 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 34567888999999999999999999999999999999999999999999999999999999999999976521
Q ss_pred ccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcC-CceeecCHHHHHHHHHcccccc
Q psy6409 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 799 ~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
...++++||++||++||.|+.+.+.+++...++.+..++||.....+...+..+ ++|+|+||++|.+.+.++.+.+
T Consensus 95 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 171 (237)
T 3bor_A 95 ---EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSP 171 (237)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCS
T ss_pred ---cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCc
Confidence 235678999999999999999999999988899999999998877776666655 8999999999999999888889
Q ss_pred CCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 878 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
..+++|||||||+|++++|...+..++..++ ...|+++||||+|+.+..++..++
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLN-------------------------TSIQVVLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEECSSCCHHHHHHHHHHC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCC-------------------------CCCeEEEEEEecCHHHHHHHHHHC
Confidence 9999999999999999999999999988774 247999999999999999999999
Q ss_pred CCCcEEEEc
Q psy6409 958 RRPATVYIG 966 (1832)
Q Consensus 958 ~~p~~v~~~ 966 (1832)
.+|..+.++
T Consensus 227 ~~p~~i~v~ 235 (237)
T 3bor_A 227 RDPIRILVK 235 (237)
T ss_dssp SSCEEEC--
T ss_pred CCCEEEEec
Confidence 999877654
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=310.03 Aligned_cols=209 Identities=42% Similarity=0.725 Sum_probs=189.6
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccC
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~ 803 (1832)
+.++.+|++++|++.++++|+++||..|+++|.++++.++.|+|++++||||||||++|++|++..+.. ..
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~---------~~ 109 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE---------TP 109 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc---------CC
Confidence 345678999999999999999999999999999999999999999999999999999999999987643 23
Q ss_pred CCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCCcee
Q psy6409 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTY 882 (1832)
Q Consensus 804 ~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~~ 882 (1832)
.++++||++||++||.|+.+.+.+++...++++..++||.....+...+..+++|+|+||++|.+.+.+ +.+.+..+++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 189 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCE
Confidence 467899999999999999999999988889999999999998888777888999999999999999876 4567899999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++++++|...+..++..++ ...|+++||||+|+.+..++..++.+|..
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~~-------------------------~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVIP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSSC-------------------------SSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEEcChhhhhccChHHHHHHHHHhCC-------------------------CCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 99999999999999999999998774 23799999999999999999999999988
Q ss_pred EEEc
Q psy6409 963 VYIG 966 (1832)
Q Consensus 963 v~~~ 966 (1832)
+.++
T Consensus 245 i~v~ 248 (249)
T 3ber_A 245 CAVS 248 (249)
T ss_dssp EECC
T ss_pred EEec
Confidence 7653
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-32 Score=338.61 Aligned_cols=271 Identities=18% Similarity=0.159 Sum_probs=193.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCc
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~ 1518 (1832)
.|++++++||||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+..++|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCc
Confidence 37899999999999999999999965532 46789999999999999988775 34455555543
Q ss_pred chHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHH
Q psy6409 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 1598 (1832)
Q Consensus 1519 ~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~ 1598 (1832)
.. .-..+.-+.+.|.+.+...+.. ...+.++++|||||||++ +.++......+....
T Consensus 64 ~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~---------------- 120 (431)
T 2v6i_A 64 QS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV---------------- 120 (431)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH----------------
T ss_pred cc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh----------------
Confidence 21 1122455777899988766665 556889999999999986 322333333332221
Q ss_pred HHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcE
Q psy6409 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1678 (1832)
Q Consensus 1599 ~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~v 1678 (1832)
....+++++||||+++.+..+... ..|.. .+.. ... ..+...+..++... .+++
T Consensus 121 --------~~~~~~~l~~SAT~~~~~~~~~~~--~~~i~-~~~~-------------~~~-~~~~~~~~~~l~~~-~~~~ 174 (431)
T 2v6i_A 121 --------SMGDAGAIFMTATPPGTTEAFPPS--NSPII-DEET-------------RIP-DKAWNSGYEWITEF-DGRT 174 (431)
T ss_dssp --------HTTSCEEEEEESSCTTCCCSSCCC--SSCCE-EEEC-------------CCC-SSCCSSCCHHHHSC-SSCE
T ss_pred --------hCCCCcEEEEeCCCCcchhhhcCC--CCcee-eccc-------------cCC-HHHHHHHHHHHHcC-CCCE
Confidence 113579999999998753321110 11111 1100 000 01112223444443 5689
Q ss_pred EEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCE------------
Q psy6409 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM------------ 1746 (1832)
Q Consensus 1679 IVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~------------ 1746 (1832)
||||+++++|+.++..|...++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+
T Consensus 175 lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~ 249 (431)
T 2v6i_A 175 VWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPIL 249 (431)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcccccee
Confidence 999999999999999999999999999997 588899999999999999999999999999 655
Q ss_pred -----EEEeCCCCCHHHHHHHhcccccCCC-ccEEEEEee
Q psy6409 1747 -----VINYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCT 1780 (1832)
Q Consensus 1747 -----VI~~d~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~ 1780 (1832)
||+++.|.+..+|+||+||+||.|. .|.+++|..
T Consensus 250 d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred cccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 6788999999999999999999985 566666663
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=305.04 Aligned_cols=212 Identities=29% Similarity=0.510 Sum_probs=182.7
Q ss_pred cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhh
Q psy6409 719 KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798 (1832)
Q Consensus 719 ~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~ 798 (1832)
.++..|.+..+|++++|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 88 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ 88 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 35667888899999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccccc
Q psy6409 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 799 ~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
...++++||++||++|+.|+.+.+.+++... ++++..++||.....+...+ .+++|+|+||++|.+++..+.+.+
T Consensus 89 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 89 ---ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred ---cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccc
Confidence 2346899999999999999999999998765 89999999998876665544 479999999999999998888888
Q ss_pred CCceeEEEecchhhhcCC-ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh
Q psy6409 878 NQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY 956 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d~g-f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~ 956 (1832)
.++++|||||||+++++| |.+.+..|+..++ ...|+++||||+|+.+..++..|
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~l~lSAT~~~~~~~~~~~~ 219 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLP-------------------------ASKQMLAVSATYPEFLANALTKY 219 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC-------------------------SSCEEEEEESCCCHHHHHHHTTT
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCC-------------------------CCCeEEEEEeccCHHHHHHHHHH
Confidence 999999999999999998 9999999998875 23689999999999999999999
Q ss_pred cCCCcEEEE
Q psy6409 957 LRRPATVYI 965 (1832)
Q Consensus 957 l~~p~~v~~ 965 (1832)
+.+|..+.+
T Consensus 220 ~~~p~~i~~ 228 (230)
T 2oxc_A 220 MRDPTFVRL 228 (230)
T ss_dssp CSSCEEECC
T ss_pred cCCCeEEEc
Confidence 999977643
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=302.35 Aligned_cols=212 Identities=35% Similarity=0.577 Sum_probs=186.6
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccC
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~ 803 (1832)
+.++.+|++++|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..... ...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~ 95 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-----TST 95 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-----CGG
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-----ccc
Confidence 567789999999999999999999999999999999999999999999999999999999999988754221 123
Q ss_pred CCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCcee
Q psy6409 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTY 882 (1832)
Q Consensus 804 ~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~ 882 (1832)
.++++||++||++||.|+.+.+.+++...++.+..++||.....+...+ .+++|+|+||++|.+.+.+. .+.+..+++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 5788999999999999999999999988899999999998876665554 47999999999999988765 467889999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++++++|...+..++..++ ...|+++||||+|+.+..+++.++.+|..
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSC-------------------------TTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCC-------------------------CCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999998875 23789999999999999999999999988
Q ss_pred EEEc
Q psy6409 963 VYIG 966 (1832)
Q Consensus 963 v~~~ 966 (1832)
+.++
T Consensus 230 i~~~ 233 (236)
T 2pl3_A 230 VWVH 233 (236)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7664
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-32 Score=309.65 Aligned_cols=189 Identities=30% Similarity=0.561 Sum_probs=170.6
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|+|+|.+|||.++.|+|++++||||||||++|++|++..+.. ...++.+|||+||++||.|++
T Consensus 29 l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~---------~~~~~~~lil~Pt~~L~~q~~ 99 (220)
T 1t6n_A 29 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVSVLVMCHTRELAFQIS 99 (220)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------CTTCCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---------cCCCEEEEEEeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999976532 134578999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhc-CccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhc-CCChHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPD 158 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~-~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~-~gf~~~ 158 (1832)
++++++.... ++++++++||.+...+...+.. .++|+|+|||+|.+++..+.+.+.++++||+||||+|++ +||...
T Consensus 100 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 179 (220)
T 1t6n_A 100 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD 179 (220)
T ss_dssp HHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHH
T ss_pred HHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHH
Confidence 9999998776 7899999999999888888875 579999999999999999888999999999999999998 599999
Q ss_pred HHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccc
Q psy6409 159 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238 (1832)
Q Consensus 159 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1832)
+..|++.+|.
T Consensus 180 ~~~i~~~~~~---------------------------------------------------------------------- 189 (220)
T 1t6n_A 180 VQEIFRMTPH---------------------------------------------------------------------- 189 (220)
T ss_dssp HHHHHHTSCS----------------------------------------------------------------------
T ss_pred HHHHHHhCCC----------------------------------------------------------------------
Confidence 9999886641
Q ss_pred ccceeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
.+|+++||||+|+.++++++.||.+|+.|.|
T Consensus 190 --~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 190 --EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp --SSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred --cCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 2799999999999999999999999998865
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=302.84 Aligned_cols=208 Identities=35% Similarity=0.535 Sum_probs=184.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
|..+|++++|++.++++|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ...+
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~---------~~~~ 72 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP---------ERAE 72 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---------TSCS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---------CcCC
Confidence 3468999999999999999999999999999999999999999999999999999999999976532 2346
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCC----CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPL----GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~----~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
+++||++||++||.|+.+.+.+++... ++.+..++||.....+...+..+++|+|+||++|.+.+.++.+.+..++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 152 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcce
Confidence 889999999999999999999998776 7889999999887666555556799999999999999988888889999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+|||||||++.+++|...+..++..++ ...|+++||||+|+.+..+++.++.+|.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~~~~p~ 207 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARMP-------------------------KDLQMLVFSATIPEKLKPFLKKYMENPT 207 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTSC-------------------------TTCEEEEEESCCCGGGHHHHHHHCSSCE
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhCC-------------------------cccEEEEEecCCCHHHHHHHHHHcCCCe
Confidence 999999999999999999999988774 2379999999999999999999999998
Q ss_pred EEEEcc
Q psy6409 962 TVYIGS 967 (1832)
Q Consensus 962 ~v~~~~ 967 (1832)
.+.+..
T Consensus 208 ~~~~~~ 213 (219)
T 1q0u_A 208 FVHVLE 213 (219)
T ss_dssp EEECC-
T ss_pred EEEeec
Confidence 776543
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=294.75 Aligned_cols=202 Identities=33% Similarity=0.595 Sum_probs=184.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.. ...+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~~~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---------KKDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------TSCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---------cCCCee
Confidence 36999999999999999999999999999999999999999999999999999999999976521 235678
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+||++||++|+.|+.+.+..++... ++.+..++||.....+...+..+++|+|+||++|.+.+.++...+..+++||+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 9999999999999999999998877 789999999999888777777889999999999999999888889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
|||++.+.+|...+..++..++ ...|+++||||+|+.+..++..++.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLP-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSC-------------------------TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCC-------------------------ccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999988875 237999999999999999999999998754
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=348.11 Aligned_cols=305 Identities=19% Similarity=0.227 Sum_probs=190.1
Q ss_pred CCCcHHHHHHHHHHHc----C-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH-
Q psy6409 749 AEPTPIQRQAIPIGLQ----N-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE- 822 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~----g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~- 822 (1832)
..|+|+|.++++.++. | +++++++|||||||++++..+...+.. ... ......++++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~-~~~--~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSA-RWN--RTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHT-TCC--SSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhc-ccc--cccccCCCeEEEEeCCHHHHHHHHH
Confidence 4799999999999886 4 669999999999999976555433321 100 001125789999999999999998
Q ss_pred HHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHH----ccccccCCceeEEEecchhhhcCCChH
Q psy6409 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE----NRYLVLNQCTYIVLDEADRMIDMGFEP 898 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~----~~~~~l~~~~~lViDEaH~l~d~gf~~ 898 (1832)
+.++.++ ..+..+.++. ...+.+|+|+||++|...+. ...+....+++|||||||++...+ ..
T Consensus 254 ~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 7777653 3344444332 23468999999999987764 223456789999999999987643 24
Q ss_pred HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE--------------
Q psy6409 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY-------------- 964 (1832)
Q Consensus 899 ~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~-------------- 964 (1832)
.+..++..++ ..++++||||+......-...++..+...+
T Consensus 321 ~~~~il~~~~--------------------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~ 374 (590)
T 3h1t_A 321 NWREILEYFE--------------------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPY 374 (590)
T ss_dssp -CHHHHHHST--------------------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCE
T ss_pred HHHHHHHhCC--------------------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCc
Confidence 5566666653 257999999976433322233333333221
Q ss_pred ----EcccCCC-------------CcceEEEEEEcch-------hhHHH----HHHHHHHc-CCCCCEEEEEcccchHHH
Q psy6409 965 ----IGSVGKP-------------TERIEQIVYILSE-------QDKRK----KLMEVLNR-GVKKPVIIFVNQKKGADV 1015 (1832)
Q Consensus 965 ----~~~~~~~-------------~~~i~q~~~~~~~-------~~k~~----~L~~~l~~-~~~~~vIVFv~s~~~~~~ 1015 (1832)
+...... ...+....+.... ..+.. .+.+.+.. ...+++||||+++.+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~ 454 (590)
T 3h1t_A 375 RVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454 (590)
T ss_dssp EEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHH
T ss_pred EEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHH
Confidence 1000000 0000000000000 11112 23333333 345789999999999999
Q ss_pred HHHHHHHcCCc--------EEEEcCCCCHHHHHHHHHHHhCCCCc---EEEecccccccCCCcCcCEEEEcCCCCCHhHH
Q psy6409 1016 LAKGLEKLGYN--------ACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084 (1832)
Q Consensus 1016 l~~~L~~~g~~--------v~~lhg~~~~~~R~~il~~F~~G~~~---VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~y 1084 (1832)
+++.|...+.. +..+||.++. +|..+++.|++|+.+ |||||+++++|||+|+|++||++++|.|...|
T Consensus 455 l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~ 533 (590)
T 3h1t_A 455 MRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEF 533 (590)
T ss_dssp HHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHH
T ss_pred HHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHH
Confidence 99999876532 7789998764 799999999998877 89999999999999999999999999999999
Q ss_pred HHHhcccccCCC
Q psy6409 1085 THRIGRTGRAGK 1096 (1832)
Q Consensus 1085 vQr~GRaGR~g~ 1096 (1832)
+||+|||||.+.
T Consensus 534 ~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 534 KQIVGRGTRLRE 545 (590)
T ss_dssp HHHHTTSCCCBG
T ss_pred HHHHhhhcccCc
Confidence 999999999875
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=299.25 Aligned_cols=212 Identities=30% Similarity=0.525 Sum_probs=182.1
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...|.++.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------- 78 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------- 78 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT--------
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc--------
Confidence 456788899999999999999999999999999999999999999999999999999999999999976532
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
...++++||++||++|+.|+.+.+..++...++.+..++||.....+...+. .++|+|+||++|.+.+.++...+..+
T Consensus 79 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 79 -SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp -TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 2356799999999999999999999999888999999999988766655544 49999999999999998888889999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
++|||||||++.+++|...+..++..++ ...|++++|||+|+.+..++..++.+|
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCC-------------------------ccCeEEEEEeecCHHHHHHHHHHCCCC
Confidence 9999999999999999999999988774 237999999999999999999999999
Q ss_pred cEEEEcc
Q psy6409 961 ATVYIGS 967 (1832)
Q Consensus 961 ~~v~~~~ 967 (1832)
..+.+..
T Consensus 212 ~~i~~~~ 218 (224)
T 1qde_A 212 VRILVKK 218 (224)
T ss_dssp EEEC---
T ss_pred EEEEecC
Confidence 8876653
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=348.73 Aligned_cols=305 Identities=18% Similarity=0.216 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH-
Q psy6409 1424 AEPTPIQRQAIPIGLQ----N-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE- 1497 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~----g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~- 1497 (1832)
..|+|+|.++++.++. | +++++++|||||||++++..+...+... .. ......++++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~-~~--~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSAR-WN--RTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTT-CC--SSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcc-cc--cccccCCCeEEEEeCCHHHHHHHHH
Confidence 3799999999999886 4 6699999999999999765554443321 00 001125788999999999999998
Q ss_pred HHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccchhhhcCCChH
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
+.++.++ ..+..+.++. ...+++|+|+||++|...+.. ..+....+++|||||||++...+ ..
T Consensus 254 ~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 6666654 3344443332 234689999999999887642 23456789999999999987543 24
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE---------------
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV--------------- 1638 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v--------------- 1638 (1832)
.+..++..++ ..++++||||+..........++..+...
T Consensus 321 ~~~~il~~~~--------------------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~ 374 (590)
T 3h1t_A 321 NWREILEYFE--------------------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPY 374 (590)
T ss_dssp -CHHHHHHST--------------------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCE
T ss_pred HHHHHHHhCC--------------------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCc
Confidence 5566666664 25799999998754332233333333221
Q ss_pred ---EEcccCCC-------------CcceEEEEEEcch-------hhHHHH----HHHHHHh-CCCCcEEEEECchhHHHH
Q psy6409 1639 ---YIGSVGKP-------------TERIEQIVYILSE-------QDKRKK----LMEVLNR-GVKKPVIIFVNQKKGADV 1690 (1832)
Q Consensus 1639 ---~i~~~~~~-------------~~~i~q~~~~~~~-------~~k~~~----l~~~l~~-~~~~~vIVFv~s~~~a~~ 1690 (1832)
.+...... ...+....+.... ..+... +...+.. ....++||||+++.+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~ 454 (590)
T 3h1t_A 375 RVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454 (590)
T ss_dssp EEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHH
T ss_pred EEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHH
Confidence 11100000 0000000000000 111122 3333333 345799999999999999
Q ss_pred HHHHHHHcCCc--------EEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcccccccCCCCCCCEEEEeCCCCCHHHH
Q psy6409 1691 LAKGLEKLGYN--------ACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759 (1832)
Q Consensus 1691 l~~~L~~~~~~--------v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATdvl~~GIDip~v~~VI~~d~P~s~~~y 1759 (1832)
++..|...+.. +..+||.+++ +|..+++.|++|+.+ |||||+++++|||+|+|++||+++.|.|...|
T Consensus 455 l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~ 533 (590)
T 3h1t_A 455 MRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEF 533 (590)
T ss_dssp HHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHH
T ss_pred HHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHH
Confidence 99999876432 7788998764 799999999998877 89999999999999999999999999999999
Q ss_pred HHHhcccccCCC
Q psy6409 1760 THRIGRTGRAGK 1771 (1832)
Q Consensus 1760 iQRiGRaGR~g~ 1771 (1832)
+||+||+||.+.
T Consensus 534 ~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 534 KQIVGRGTRLRE 545 (590)
T ss_dssp HHHHTTSCCCBG
T ss_pred HHHHhhhcccCc
Confidence 999999999764
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=305.98 Aligned_cols=203 Identities=36% Similarity=0.572 Sum_probs=180.1
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 729 NWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 729 ~f~~~~--L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+|++++ +++.++++|.++||..|+|+|.++++.++.|+|+|++||||||||++|++|++..+..... ....++
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~ 127 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-----MPRNGT 127 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----CGGGCC
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----cccCCc
Confidence 566666 9999999999999999999999999999999999999999999999999999988765321 123478
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lVi 885 (1832)
++|||+||++||.|+++.+++++...++.+..++||.....+...+..+++|+|+|||+|.+.+.... +.+.++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 89999999999999999999999999999999999999888888888899999999999999887653 67899999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
||||+|++++|++.+..|+..++ ...|+++||||+|+.+..+++.++.++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~-------------------------~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLP-------------------------TRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSC-------------------------SSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCC-------------------------CCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999885 2379999999999999999999988654
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=339.03 Aligned_cols=286 Identities=20% Similarity=0.192 Sum_probs=209.1
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEE
Q psy6409 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 1513 (1832)
Q Consensus 1434 i~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~ 1513 (1832)
....+.|++++++||||||||+.+ +..+.. .+.++|++||++||.|+++.+.+. |+.+..
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~------------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHA----IQKYFS------------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHH----HHHHHH------------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh------------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 345678999999999999999833 333222 123599999999999999999886 677888
Q ss_pred EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCch
Q psy6409 1514 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 1593 (1832)
Q Consensus 1514 l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~ 1593 (1832)
++|+...... ......+++++|++.+. ....+++|||||||+|++.+|+..+..++..++.
T Consensus 209 ltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--------- 269 (677)
T 3rc3_A 209 VTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--------- 269 (677)
T ss_dssp ECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE---------
T ss_pred EECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc---------
Confidence 9998664110 00112678888876432 3567899999999999999999999998887751
Q ss_pred hhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC
Q psy6409 1594 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 1673 (1832)
Q Consensus 1594 ~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~ 1673 (1832)
...+++++|||. +.+..+.... ..+..+. ....... .. ..... +..+...
T Consensus 270 ---------------~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~--~~~r~~~-l~----~~~~~------l~~l~~~ 319 (677)
T 3rc3_A 270 ---------------EEVHLCGEPAAI-DLVMELMYTT-GEEVEVR--DYKRLTP-IS----VLDHA------LESLDNL 319 (677)
T ss_dssp ---------------EEEEEEECGGGH-HHHHHHHHHH-TCCEEEE--ECCCSSC-EE----ECSSC------CCSGGGC
T ss_pred ---------------cceEEEeccchH-HHHHHHHHhc-CCceEEE--Eeeecch-HH----HHHHH------HHHHHhc
Confidence 347899999995 3344444332 2232221 1111111 00 00000 0011112
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC--CCCcEEEEcccccccCCCCCCCEEEEeC
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYD 1751 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~--g~~~VLVATdvl~~GIDip~v~~VI~~d 1751 (1832)
....||||++++.++.++..|...++.+..+||+|++.+|..+++.|++ |+++|||||+++++|||+ +|++||+++
T Consensus 320 -~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~ 397 (677)
T 3rc3_A 320 -RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYS 397 (677)
T ss_dssp -CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESC
T ss_pred -CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECC
Confidence 3456899999999999999999999999999999999999999999999 999999999999999999 899999999
Q ss_pred C--------------CCCHHHHHHHhcccccCCCc---cEEEEEeeCCChhHHHHHH
Q psy6409 1752 M--------------AKSIEDYTHRIGRTGRAGKE---GLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1752 ~--------------P~s~~~yiQRiGRaGR~g~~---G~ai~~~~~~d~~~~~~l~ 1791 (1832)
+ |.+..+|+||+|||||.|.. |.|+. +.+.+...+..+.
T Consensus 398 ~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~~~~~~ 453 (677)
T 3rc3_A 398 LIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSLLKEIL 453 (677)
T ss_dssp SBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHHHHHHH
T ss_pred ccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHHHHHHH
Confidence 9 78999999999999999865 55544 4444544444443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=289.12 Aligned_cols=204 Identities=40% Similarity=0.669 Sum_probs=183.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
+|++++|++.++++|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------ERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC------CTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc------ccCCCCcE
Confidence 699999999999999999999999999999999999999999999999999999999998764211 12357899
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||++||++|+.|+.+.+.+++.. +++..++||.....+...+..+++|+|+||+++.+.+.++.+.+..+++||+|||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred EEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 99999999999999999998764 6788899999887777777789999999999999999888888999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
|++.+++|...+..++..++ ...|++++|||+|+.+..++..++.+|..+.+
T Consensus 154 h~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 154 DEMLSMGFEEEVEALLSATP-------------------------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHTTCHHHHHHHHHTSC-------------------------TTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hHhhccchHHHHHHHHHhCC-------------------------ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999988764 24799999999999999999999999987754
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=314.95 Aligned_cols=342 Identities=22% Similarity=0.275 Sum_probs=249.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|+ .|+++|....-.+..|+ |+.+.||+|||++|.+|++...+ .|..+.|++|+..||.|-++++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 565 69999999999999888 99999999999999999985432 3667999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcC--------------------------------------------------CchHHHHHHHhcC
Q psy6409 826 NKFGTPLGIRTVLVVGG--------------------------------------------------LSREEQGFRLRLG 855 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg--------------------------------------------------~~~~~~~~~l~~~ 855 (1832)
..+...+|++|++++.. ++..+.... -.
T Consensus 137 ~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~ 214 (822)
T 3jux_A 137 GPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YL 214 (822)
T ss_dssp HHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HH
T ss_pred HHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hc
Confidence 99999999999999982 221111111 24
Q ss_pred CceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCC------------ChH---HHHHHHHhCC----
Q psy6409 856 CEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMG------------FEP---DVQKILEYMP---- 908 (1832)
Q Consensus 856 ~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~g------------f~~---~i~~Il~~l~---- 908 (1832)
|+|.++|..-+- |.|..+. .....+.|.||||+|.++ |.. -.. .+..++..+.
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 899999998774 5554332 234568999999999754 211 011 1111111111
Q ss_pred -------------------------CCCCC---------------------------------------------CCCch
Q psy6409 909 -------------------------VTNLK---------------------------------------------PDTED 918 (1832)
Q Consensus 909 -------------------------~~~~~---------------------------------------------~~~~~ 918 (1832)
..++. +....
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 00000 00000
Q ss_pred hHHHHHHHHhhc------------------cccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EE
Q psy6409 919 AEDENKLLANYN------------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IV 979 (1832)
Q Consensus 919 ~~~~~~ll~~~~------------------~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~ 979 (1832)
.+.+...+..-+ -.+.+..+.++|+|+......|...|-- ..+.+ +...+...+.+ ..
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~I-Ptnkp~~R~d~~d~ 451 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVI-PTHKPMIRKDHDDL 451 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEEC-CCSSCCCCEECCCE
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEE-CCCCCcceeecCcE
Confidence 011111110000 0133568999999999888888777743 23333 34444445544 34
Q ss_pred EEcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec
Q psy6409 980 YILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1057 (1832)
Q Consensus 980 ~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT 1057 (1832)
.+.....|...+.+.+... .+.|+||||+|+..++.++..|...|+++.++||+..+.++..+...|+.| .|+|||
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 5667888999988887653 567899999999999999999999999999999997666666677777776 599999
Q ss_pred ccccccCCCc--------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1058 DVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1058 dv~~rGlDip--------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|+|+||+||+ ++.+||||++|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9999999998 667999999999999999999999999999999999999884
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=292.23 Aligned_cols=211 Identities=29% Similarity=0.535 Sum_probs=180.4
Q ss_pred CCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhc
Q psy6409 720 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799 (1832)
Q Consensus 720 ~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~ 799 (1832)
+.-.+....+|++++|++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+..
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------- 78 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------- 78 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-------
Confidence 4444555678999999999999999999999999999999999999999999999999999999999976421
Q ss_pred cccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhc-CCceeecCHHHHHHHHHcccccc
Q psy6409 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 800 ~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
...++++||++||++|+.|+.+.+.+++... ++++..++||.....+...+.. .++|+|+||++|.+++.+..+.+
T Consensus 79 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 79 --VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp --CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred --cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCc
Confidence 2345789999999999999999999998776 7999999999987777666654 47999999999999998888889
Q ss_pred CCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh
Q psy6409 878 NQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY 956 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~ 956 (1832)
..+++|||||||++++ .+|...+..++..++ ...|++++|||+|+.+..++..+
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESCCCTTTHHHHHTT
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC-------------------------CcCeEEEEEeecCHHHHHHHHHH
Confidence 9999999999999987 478888888877664 24799999999999999999999
Q ss_pred cCCCcEEE
Q psy6409 957 LRRPATVY 964 (1832)
Q Consensus 957 l~~p~~v~ 964 (1832)
+.+|..+.
T Consensus 212 ~~~p~~i~ 219 (220)
T 1t6n_A 212 MQDPMEIF 219 (220)
T ss_dssp CSSCEEEE
T ss_pred cCCCeEEe
Confidence 99997764
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-28 Score=304.10 Aligned_cols=342 Identities=21% Similarity=0.250 Sum_probs=249.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-..-.+..|+ |..+.||+|||++|.+|++...+ .|..|.||+|+..||.|-+.++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 576 79999999998888887 99999999999999999975432 3677999999999999999999
Q ss_pred HHhcCCCCCeEEEEECC--------------------------------------------------cchHHHHHHhhcC
Q psy6409 1501 NKFGTPLGIRTVLVVGG--------------------------------------------------LSREEQGFRLRLG 1530 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg--------------------------------------------------~~~~~~~~~l~~~ 1530 (1832)
..+...+|++|.+++.. .+..+... .-.
T Consensus 137 ~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~ 214 (822)
T 3jux_A 137 GPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYL 214 (822)
T ss_dssp HHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHH
T ss_pred HHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--Hhc
Confidence 99999999999999882 11111111 124
Q ss_pred CcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcC---------C----ChHHHHHHHHhCCCCCC---
Q psy6409 1531 CEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDM---------G----FEPDVQKILEYMPVTNL--- 1587 (1832)
Q Consensus 1531 ~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~---------g----f~~~l~~Il~~l~~~~~--- 1587 (1832)
|||+.+|..-| .+.|+.+. .....+.+.||||+|.++=. | -...+..+....+....
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 89999999876 36665432 23456899999999975411 0 11112222211111100
Q ss_pred ----------------------------CCCCchhhh----HHHHHhhh--c----------------------------
Q psy6409 1588 ----------------------------KPDTEDAED----ENKLLANY--N---------------------------- 1605 (1832)
Q Consensus 1588 ----------------------------~~~~~~~~~----~~~l~~~~--~---------------------------- 1605 (1832)
..+...... ...+.+.. .
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 000000000 00000000 0
Q ss_pred ------------------------------cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EE
Q psy6409 1606 ------------------------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IV 1654 (1832)
Q Consensus 1606 ------------------------------~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~ 1654 (1832)
.-+.+..+.+||+|+......+...|..+ .+.+ +...+...+.+ ..
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~ 451 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDL 451 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCE
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcE
Confidence 00123468899999998888887777433 3333 44555555554 34
Q ss_pred EEcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc
Q psy6409 1655 YILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1732 (1832)
Q Consensus 1655 ~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT 1732 (1832)
.+.....|...++..+... ...|+||||+|+..++.|+..|...|+++.++||+..+.++..+...|+.| .|+|||
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 5667788999988887653 567999999999999999999999999999999997776777777777776 599999
Q ss_pred ccccccCCCC--------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1733 DVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1733 dvl~~GIDip--------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
++++||+||+ +..+||++++|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9999999998 667999999999999999999999999999999999999874
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=346.18 Aligned_cols=319 Identities=18% Similarity=0.154 Sum_probs=222.9
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+.. ....++|||||+ .|+.|+..++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 47999999999998864 589999999999999998877665532 233479999999 99999999997
Q ss_pred HhcCCCCCeEEEEECCcchHHHHH--HhhcCCcEEEeCHHHHHHHHHc-cccccCCceeEEEccchhhhcCCChH--HHH
Q psy6409 1502 KFGTPLGIRTVLVVGGLSREEQGF--RLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEP--DVQ 1576 (1832)
Q Consensus 1502 ~~~~~~g~~v~~l~gg~~~~~~~~--~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v~llViDEaH~ll~~gf~~--~l~ 1576 (1832)
+.+ ++.+..+.|+........ ......+|+|+|++.+...... ..+...++++|||||||++...+... .+.
T Consensus 221 ~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 221 RRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 654 555555544332211110 1123579999999977532211 22445689999999999986544221 122
Q ss_pred HHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHH---HHH------------------------
Q psy6409 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVE---RLA------------------------ 1628 (1832)
Q Consensus 1577 ~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~---~~~------------------------ 1628 (1832)
.+..... ....++++|||+.. ... .+.
T Consensus 298 ~l~~L~~-------------------------~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i 352 (968)
T 3dmq_A 298 AIEQLAE-------------------------HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPV 352 (968)
T ss_dssp HHHHHHT-------------------------TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHH
T ss_pred HHHHHhh-------------------------cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHH
Confidence 2211110 12357888998732 000 000
Q ss_pred ----HHhcC----------------------------------------------------CCcEEEEcc---cCCCCcc
Q psy6409 1629 ----RSYLR----------------------------------------------------RPATVYIGS---VGKPTER 1649 (1832)
Q Consensus 1629 ----~~~l~----------------------------------------------------~p~~v~i~~---~~~~~~~ 1649 (1832)
..... ....+.... .+.+...
T Consensus 353 ~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~ 432 (968)
T 3dmq_A 353 ADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRE 432 (968)
T ss_dssp HHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCC
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhh
Confidence 00000 000000000 0000000
Q ss_pred eEEEE---------------------------------------------EEcchhhHHHHHHHHHHhCCCCcEEEEECc
Q psy6409 1650 IEQIV---------------------------------------------YILSEQDKRKKLMEVLNRGVKKPVIIFVNQ 1684 (1832)
Q Consensus 1650 i~q~~---------------------------------------------~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s 1684 (1832)
+.... ..+....|...+..++......++||||++
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~ 512 (968)
T 3dmq_A 433 LHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAK 512 (968)
T ss_dssp CCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSS
T ss_pred eEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 00000 122334578889999988888899999999
Q ss_pred hhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhhCCC--CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1685 KKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~~g~--~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
+.+++.++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|.++..|+|
T Consensus 513 ~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q 592 (968)
T 3dmq_A 513 AATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQ 592 (968)
T ss_dssp THHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHH
Confidence 9999999999994 6999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhcccccCCCccEEEEEeeC
Q psy6409 1762 RIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1762 RiGRaGR~g~~G~ai~~~~~ 1781 (1832)
|+||+||.|+.|.++++...
T Consensus 593 ~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 593 RIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp HHHTTSCSSSCSCCEEEEEE
T ss_pred HhhccccCCCCceEEEEEec
Confidence 99999999998866666443
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=346.21 Aligned_cols=333 Identities=18% Similarity=0.132 Sum_probs=228.3
Q ss_pred CCCcHHHHHHHHHHHc--CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ--NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~--grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
.+|+|+|.+++..++. +.++|++++||+|||++++..+...+.. ....++|||||+ .|+.|+..++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 5799999999998886 4579999999999999998877655421 234479999999 99999999997
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHH--HHhcCCceeecCHHHHHHHHHc-cccccCCceeEEEecchhhhcCCChH-HHHH
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGF--RLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEP-DVQK 902 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~--~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~~lViDEaH~l~d~gf~~-~i~~ 902 (1832)
+.. ++.+..+.|+........ ......+|+|+|++.+...... ..+....+++|||||||++...+... ....
T Consensus 221 ~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 221 RRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 654 556555544332211100 1112479999999988532211 22345689999999999986544221 1111
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-H---HHHHHHH-----------------------
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-A---VERLARS----------------------- 955 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~---v~~~~~~----------------------- 955 (1832)
++..+ . .....++++|||.-. . +..+...
T Consensus 298 ~l~~L----------------------~--~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~ 353 (968)
T 3dmq_A 298 AIEQL----------------------A--EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVA 353 (968)
T ss_dssp HHHHH----------------------H--TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------h--hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHH
Confidence 11111 0 012357888888621 0 0000000
Q ss_pred -----hcC----------------------------------------------------CCcEEEEccc---CCCCcce
Q psy6409 956 -----YLR----------------------------------------------------RPATVYIGSV---GKPTERI 975 (1832)
Q Consensus 956 -----~l~----------------------------------------------------~p~~v~~~~~---~~~~~~i 975 (1832)
+.. ....+..... ..+...+
T Consensus 354 ~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~ 433 (968)
T 3dmq_A 354 DAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKREL 433 (968)
T ss_dssp HHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhhe
Confidence 000 0000000000 0000000
Q ss_pred EEEE---------------------------------------------EEcchhhHHHHHHHHHHcCCCCCEEEEEccc
Q psy6409 976 EQIV---------------------------------------------YILSEQDKRKKLMEVLNRGVKKPVIIFVNQK 1010 (1832)
Q Consensus 976 ~q~~---------------------------------------------~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~ 1010 (1832)
.... ..+....|...|.+++....+.++||||+++
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~ 513 (968)
T 3dmq_A 434 HTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKA 513 (968)
T ss_dssp CEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSST
T ss_pred EeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcH
Confidence 0000 1223446788899999887888999999999
Q ss_pred chHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHH
Q psy6409 1011 KGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR 1087 (1832)
Q Consensus 1011 ~~~~~l~~~L~~-~g~~v~~lhg~~~~~~R~~il~~F~~G~--~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr 1087 (1832)
..++.++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|.++..|+|+
T Consensus 514 ~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~ 593 (968)
T 3dmq_A 514 ATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQR 593 (968)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHH
Confidence 999999999994 6999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
+||+||.|+.|.+++++...+......+.+.+
T Consensus 594 ~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 594 IGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred hhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999998766665444433444444444
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-28 Score=309.18 Aligned_cols=310 Identities=19% Similarity=0.233 Sum_probs=214.1
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..|+|+|.+++.++. .++++|++++||+|||++++..+.... . ......+||||| ..|+.|+.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~---------~~~~~~~LIv~P-~~l~~qw~~e 104 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-K---------ENELTPSLVICP-LSVLKNWEEE 104 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-H---------TTCCSSEEEEEC-STTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-h---------cCCCCCEEEEcc-HHHHHHHHHH
Confidence 379999999998874 578999999999999999765544332 1 123457999999 4689999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+.+++. +.++..+.|+... .....++|+|+|++.+..... +....+++||+||||++...+ ......+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 999875 4556666665432 112357999999998865433 344578999999999986543 1222333
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH-HHHHH------------------------------
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-VERLA------------------------------ 1628 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~-~~~~~------------------------------ 1628 (1832)
..+ .....+++|||+... ..++.
T Consensus 173 ~~l--------------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 226 (500)
T 1z63_A 173 KEL--------------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN 226 (500)
T ss_dssp HTS--------------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH
T ss_pred Hhh--------------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccH
Confidence 333 124679999998432 22111
Q ss_pred ------HHhcCCCcEEEEccc-----CCCCcceEEEEEE-cc--------------------------------------
Q psy6409 1629 ------RSYLRRPATVYIGSV-----GKPTERIEQIVYI-LS-------------------------------------- 1658 (1832)
Q Consensus 1629 ------~~~l~~p~~v~i~~~-----~~~~~~i~q~~~~-~~-------------------------------------- 1658 (1832)
..++ .|..+..... ...+......+.. ..
T Consensus 227 ~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 305 (500)
T 1z63_A 227 MAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLK 305 (500)
T ss_dssp HHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 1111 1222111110 0011111111111 11
Q ss_pred -----------------hhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHH
Q psy6409 1659 -----------------EQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELAL 1718 (1832)
Q Consensus 1659 -----------------~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~-~~~v~~lHg~ls~~~R~~il 1718 (1832)
...|...+.+++... .+.++||||+++..++.++..|... |+.+..+||++++.+|..++
T Consensus 306 ~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 306 QIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred HHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 123444555555543 5679999999999999999999885 99999999999999999999
Q ss_pred HHhhCC-CCc-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEE--EEEeeCCC
Q psy6409 1719 NSLKGG-SKD-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKDD 1783 (1832)
Q Consensus 1719 ~~F~~g-~~~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a--i~~~~~~d 1783 (1832)
+.|++| .++ +||||+++++|+|+|.+++||+||+|+|+..|+|++||++|.|+.+.+ +.|+..+.
T Consensus 386 ~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 386 SKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp HHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred HHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 999998 565 799999999999999999999999999999999999999999977654 55666653
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=323.63 Aligned_cols=323 Identities=17% Similarity=0.123 Sum_probs=221.1
Q ss_pred CHHHHHHHHHcC-------CCCCcHHHHHHHHHHHc--------------CCcEEEEecCCChHHHHHHHHHHHHHhhch
Q psy6409 736 PTEILEIIEKIG-------YAEPTPIQRQAIPIGLQ--------------NRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794 (1832)
Q Consensus 736 ~~~l~~~l~~~g-------~~~pt~iQ~~ai~~il~--------------grdvIv~apTGSGKTla~llpil~~i~~~~ 794 (1832)
++.++..|..+- ...|+|+|..|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-- 326 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-- 326 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--
Confidence 456667776542 23599999999999875 368999999999999997 666654421
Q ss_pred hhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHcc
Q psy6409 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR 873 (1832)
Q Consensus 795 ~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~ 873 (1832)
.....++|||+|+++|+.|+...+..++.. .+.|+.+.......+. .+++|+|+||++|.+++...
T Consensus 327 -------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 327 -------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp -------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred -------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 123468999999999999999999998643 1235555555544553 46899999999999887653
Q ss_pred c--cccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHH-
Q psy6409 874 Y--LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE- 950 (1832)
Q Consensus 874 ~--~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~- 950 (1832)
. ..+..+.+||+||||++.. +..+..|...+| ..++++||||+.....
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p--------------------------~a~~lgfTATP~~~~~~ 444 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK--------------------------RYYQFGFTGTPIFPENA 444 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS--------------------------SEEEEEEESSCCCSTTC
T ss_pred cchhccccccEEEEEccchhcc---hHHHHHHHHhCC--------------------------cccEEEEeCCccccccc
Confidence 2 2456789999999999764 333555555553 3689999999864221
Q ss_pred ---HHHHHhcCC-----------------CcEEEEcccCCCC-------c-----ceEEEEEEcchhhHHHHHHH-HHHc
Q psy6409 951 ---RLARSYLRR-----------------PATVYIGSVGKPT-------E-----RIEQIVYILSEQDKRKKLME-VLNR 997 (1832)
Q Consensus 951 ---~~~~~~l~~-----------------p~~v~~~~~~~~~-------~-----~i~q~~~~~~~~~k~~~L~~-~l~~ 997 (1832)
.....++.. |..+......... . .+.+. ..+....+...+.. ++..
T Consensus 445 ~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~ 523 (1038)
T 2w00_A 445 LGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNN 523 (1038)
T ss_dssp TTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 011122222 2222111100000 0 00000 00011222333332 2221
Q ss_pred ---C--------CCCCEEEEEcccchHHHHHHHHHHcC------------CcEE-EEcCC----------C---------
Q psy6409 998 ---G--------VKKPVIIFVNQKKGADVLAKGLEKLG------------YNAC-TLHGG----------K--------- 1034 (1832)
Q Consensus 998 ---~--------~~~~vIVFv~s~~~~~~l~~~L~~~g------------~~v~-~lhg~----------~--------- 1034 (1832)
. .+.++||||+++..|..+++.|...+ +.+. ++||+ +
T Consensus 524 ~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~ 603 (1038)
T 2w00_A 524 FRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSA 603 (1038)
T ss_dssp HHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGG
T ss_pred HHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccc
Confidence 1 23579999999999999999998764 5554 45542 2
Q ss_pred -CHH-----------------------------HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHH
Q psy6409 1035 -GQE-----------------------------QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084 (1832)
Q Consensus 1035 -~~~-----------------------------~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~y 1084 (1832)
++. .|..+++.|++|.++|||+|+++.+|+|+|.+ .|+++|.|.+...|
T Consensus 604 ~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~l 682 (1038)
T 2w00_A 604 MDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGL 682 (1038)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccce
Confidence 222 48889999999999999999999999999999 78899999999999
Q ss_pred HHHhcccccCCCC----cEEEEEec
Q psy6409 1085 THRIGRTGRAGKE----GLAVSFCT 1105 (1832)
Q Consensus 1085 vQr~GRaGR~g~~----G~ai~~~~ 1105 (1832)
+|++||++|.+.. |.++.|+.
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999998753 77777775
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=307.84 Aligned_cols=309 Identities=19% Similarity=0.239 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
..|+|+|.++++.+. .++++|++++||+|||++++..+.. +.. ......+||||| ..|+.|+.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~---------~~~~~~~LIv~P-~~l~~qw~~e 104 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKK---------ENELTPSLVICP-LSVLKNWEEE 104 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHH---------TTCCSSEEEEEC-STTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHh---------cCCCCCEEEEcc-HHHHHHHHHH
Confidence 479999999998764 5789999999999999997654443 221 123467999999 5699999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il 904 (1832)
+.+++. ++++..+.|+... ......+|+|+||+++..... +....+++||+||||++.+.+ ......+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 999875 4566666665532 112358999999999865432 344578999999999986543 1222333
Q ss_pred HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-HHHHHH------------------------------
Q psy6409 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLA------------------------------ 953 (1832)
Q Consensus 905 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~v~~~~------------------------------ 953 (1832)
..+ .....+++|||... ....+.
T Consensus 173 ~~l--------------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 226 (500)
T 1z63_A 173 KEL--------------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN 226 (500)
T ss_dssp HTS--------------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH
T ss_pred Hhh--------------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccH
Confidence 222 12467999999732 111111
Q ss_pred ------HHhcCCCcEEEEccc-----CCCCcceEEEEEE-c---------------------------------------
Q psy6409 954 ------RSYLRRPATVYIGSV-----GKPTERIEQIVYI-L--------------------------------------- 982 (1832)
Q Consensus 954 ------~~~l~~p~~v~~~~~-----~~~~~~i~q~~~~-~--------------------------------------- 982 (1832)
..++ .|..+..... ...+......+.. .
T Consensus 227 ~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 305 (500)
T 1z63_A 227 MAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLK 305 (500)
T ss_dssp HHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 0111 2222211100 0111111111111 0
Q ss_pred ----------------chhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHH
Q psy6409 983 ----------------SEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 983 ----------------~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il 1043 (1832)
....|...+.+++... .+.++||||+++..++.++..|... |+.+..+||++++.+|..++
T Consensus 306 ~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 306 QIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred HHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 1123445555555542 5679999999999999999999885 99999999999999999999
Q ss_pred HHHhCC-CCc-EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcE--EEEEecCC
Q psy6409 1044 NSLKGG-SKD-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1107 (1832)
Q Consensus 1044 ~~F~~G-~~~-VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~--ai~~~~~~ 1107 (1832)
+.|++| ..+ +||||+++++|||+|++++||+||+|.++..|.|++||++|.|+.+. ++.|++.+
T Consensus 386 ~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 386 SKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp HHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999998 555 79999999999999999999999999999999999999999998754 46667765
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=321.83 Aligned_cols=311 Identities=17% Similarity=0.110 Sum_probs=213.4
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1424 AEPTPIQRQAIPIGLQ--------------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~--------------g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
..|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .....++|||+|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~---------~~~~~rvLvlvpr 339 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE---------LDFIDKVFFVVDR 339 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---------CTTCCEEEEEECG
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---------cCCCceEEEEeCc
Confidence 3699999999999875 368999999999999997 666654432 1234689999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhh
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~l 1566 (1832)
++|+.|+...+..++.. .+.++.+.......+. .+++|+|+||++|..++.... ..+..+.+||+||||++
T Consensus 340 ~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 340 KDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp GGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh
Confidence 99999999999998643 1234444444444443 468999999999998876532 24567899999999998
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH----HHHHHhcCC--------
Q psy6409 1567 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE----RLARSYLRR-------- 1634 (1832)
Q Consensus 1567 l~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~----~~~~~~l~~-------- 1634 (1832)
.. +..+..|...+| ..++++||||+..... .....++..
T Consensus 414 ~~---~~~~~~I~~~~p--------------------------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~ 464 (1038)
T 2w00_A 414 QF---GEAQKNLKKKFK--------------------------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVIT 464 (1038)
T ss_dssp HH---HHHHHHHHHHCS--------------------------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHH
T ss_pred cc---hHHHHHHHHhCC--------------------------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHH
Confidence 63 334556666654 3689999999874321 011112222
Q ss_pred ---------CcEEEEcccCCCC-------c-----ceEEEEEEcchhhHHHHHHH-HHHhC-----------CCCcEEEE
Q psy6409 1635 ---------PATVYIGSVGKPT-------E-----RIEQIVYILSEQDKRKKLME-VLNRG-----------VKKPVIIF 1681 (1832)
Q Consensus 1635 ---------p~~v~i~~~~~~~-------~-----~i~q~~~~~~~~~k~~~l~~-~l~~~-----------~~~~vIVF 1681 (1832)
|..+......... . .+.+. ..+....+...+.. ++.+. ...++|||
T Consensus 465 ~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf 543 (1038)
T 2w00_A 465 DAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLA 543 (1038)
T ss_dssp HHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEE
T ss_pred HHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEE
Confidence 2221111100000 0 00000 00011222233332 32211 23579999
Q ss_pred ECchhHHHHHHHHHHHcC------------CcEE-EEcCC----------C----------CH-----------------
Q psy6409 1682 VNQKKGADVLAKGLEKLG------------YNAC-TLHGG----------K----------GQ----------------- 1711 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~------------~~v~-~lHg~----------l----------s~----------------- 1711 (1832)
|+|+.+|..++..|...+ +.+. ++||+ + ++
T Consensus 544 ~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f 623 (1038)
T 2w00_A 544 VSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHF 623 (1038)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHh
Confidence 999999999999998764 5554 45542 2 22
Q ss_pred ------------HHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc----cEE
Q psy6409 1712 ------------EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE----GLA 1775 (1832)
Q Consensus 1712 ------------~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~----G~a 1775 (1832)
..|..+++.|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.+
T Consensus 624 ~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~I 702 (1038)
T 2w00_A 624 KTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNI 702 (1038)
T ss_dssp TCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEE
T ss_pred cccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEE
Confidence 147889999999999999999999999999999 788999999999999999999997643 778
Q ss_pred EEEeeC
Q psy6409 1776 VSFCTK 1781 (1832)
Q Consensus 1776 i~~~~~ 1781 (1832)
+.|+..
T Consensus 703 Vdf~~~ 708 (1038)
T 2w00_A 703 VTFRDL 708 (1038)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 877753
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=282.11 Aligned_cols=341 Identities=21% Similarity=0.229 Sum_probs=247.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|| .||++|..++|.+++|+ |+.+.||||||++|++|++.... .|..++||+||++||.|++..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHHH
Confidence 799 99999999999999998 99999999999999999975432 2567999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccC---CceeEEEecchhhh-cC
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLN---QCTYIVLDEADRMI-DM 894 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~---~~~~lViDEaH~l~-d~ 894 (1832)
..++..+|+++++++||.+.... ....+++|+||||++| .|+|..+. +.+. .+.++||||||.|+ +.
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred HHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 99999999999999999985443 3445799999999999 89887763 4677 89999999999987 44
Q ss_pred CCh---------------HHHHHHHHhCCCCCC-------------CC--------CCch-hHHH---------------
Q psy6409 895 GFE---------------PDVQKILEYMPVTNL-------------KP--------DTED-AEDE--------------- 922 (1832)
Q Consensus 895 gf~---------------~~i~~Il~~l~~~~~-------------~~--------~~~~-~~~~--------------- 922 (1832)
++. ..+..++..++.... .. -++. ....
T Consensus 219 artPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~ 298 (997)
T 2ipc_A 219 ARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENM 298 (997)
T ss_dssp TTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCH
T ss_pred CCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhH
Confidence 432 245667777753210 00 0000 0000
Q ss_pred -------HHHHHhhc------------------------------------------------------------ccccc
Q psy6409 923 -------NKLLANYN------------------------------------------------------------SKKKY 935 (1832)
Q Consensus 923 -------~~ll~~~~------------------------------------------------------------~~~~~ 935 (1832)
..+.+... -.+.+
T Consensus 299 ~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y 378 (997)
T 2ipc_A 299 ELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLY 378 (997)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhC
Confidence 00000000 00223
Q ss_pred ceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 936 ~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..+.++|.|.......|...|--+ +.+-+...+......- ..+.....|...+.+-+.. ..+.||||+|.|.+.
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred hHheecCCCchHHHHHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 468889999987777777766543 2223344444444332 3345667777776655543 256799999999999
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q psy6409 1013 ADVLAKGLE----------------------------------------------------------------------- 1021 (1832)
Q Consensus 1013 ~~~l~~~L~----------------------------------------------------------------------- 1021 (1832)
.+.|+..|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999999998
Q ss_pred -----HcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc-------------------C-------
Q psy6409 1022 -----KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------S------- 1070 (1832)
Q Consensus 1022 -----~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v-------------------~------- 1070 (1832)
..|++..++.+.-...+-+.|-+.-+.| .|-|||++|+||.||-=- .
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 5677777777764433333333333334 589999999999998421 1
Q ss_pred ------------------------------------------------EEEEcCCCCCHhHHHHHhcccccCCCCcEEEE
Q psy6409 1071 ------------------------------------------------MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102 (1832)
Q Consensus 1071 ------------------------------------------------~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~ 1102 (1832)
+||--..+.|..-=.|-.|||||-|.+|.+-.
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 88888889999999999999999999999999
Q ss_pred EecCCC
Q psy6409 1103 FCTKDD 1108 (1832)
Q Consensus 1103 ~~~~~d 1108 (1832)
|++-+|
T Consensus 694 ~LSLeD 699 (997)
T 2ipc_A 694 YVSFDD 699 (997)
T ss_dssp EEESSS
T ss_pred EEECCh
Confidence 999877
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=290.87 Aligned_cols=175 Identities=22% Similarity=0.254 Sum_probs=135.1
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..|+++||||+++..... .. ..+.... .+.......+.......+...++..+.. ..+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~~--r~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQII--RPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEECS--CTTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--Ceeeeee--ccCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998654221 11 1111111 1100001111222233444555444433 246799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-----CCCHhHHHHH
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1087 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yvQr 1087 (1832)
|+.+++.|...|+.+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
+|||||.| .|.|++|+++.+..+...+.+.
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHHHH
Confidence 99999986 6999999999988777777654
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=247.91 Aligned_cols=182 Identities=37% Similarity=0.601 Sum_probs=148.9
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcC
Q psy6409 1628 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707 (1832)
Q Consensus 1628 ~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg 1707 (1832)
.+.|+.+|..+.++........+.|.+..+....|...|.+++... ..++||||+++..++.++..|...++.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4678999999998888878889999999999999999999999865 458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhH
Q psy6409 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1786 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~ 1786 (1832)
+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++. +..+
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7788
Q ss_pred HHHHHHHhhcCCCCCCChhhcCCCC
Q psy6409 1787 FYDLKQMMISSPVSTCPPELLNHPD 1811 (1832)
Q Consensus 1787 ~~~l~~~l~~~~~~~~~~~L~~h~~ 1811 (1832)
+..+.+.+.... +.+|+.|.++.+
T Consensus 167 ~~~l~~~l~~~~-~~~p~~l~~~~~ 190 (191)
T 2p6n_A 167 LMDLKALLLEAK-QKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHTT-CCCCHHHHSTTC
T ss_pred HHHHHHHHHHcc-CcCCHHHHhhcC
Confidence 888988887775 799999887643
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=286.12 Aligned_cols=173 Identities=23% Similarity=0.247 Sum_probs=132.7
Q ss_pred cceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhH
Q psy6409 1610 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1610 ~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~ 1687 (1832)
..|+++||||++...... .. ..+... ..+.......+.......+...++..+... .+.++||||+|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~--~r~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQI--IRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEEC--SCTTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--Ceeeee--eccCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998754221 11 111111 111111111122223334455555544432 46799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC-----CCCHHHHHHH
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1762 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-----P~s~~~yiQR 1762 (1832)
|+.|+..|...|+.+.++||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|. |.|..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccccCCCccEEEEEeeCCChhHHHHHH
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1791 (1832)
+|||||.+ .|.|++|+++.+..+...+.
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 99999985 89999999998765554443
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=266.89 Aligned_cols=341 Identities=20% Similarity=0.222 Sum_probs=247.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|| .|+|+|..++|.++.|+ |+.+.||||||++|.+|++.... .|..|+||+||++||.|.+.++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHHH
Confidence 799 99999999999999998 99999999999999999974332 2557999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccC---CceeEEEccchhhh-cC
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLN---QCTYIVLDEADRMI-DM 1569 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~---~v~llViDEaH~ll-~~ 1569 (1832)
..++..+|+++.+++||.+..... ...+++|+|+||++| .+++..+. +.+. .+.++||||||.|+ +.
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 999999999999999998865443 344799999999999 88887763 4677 89999999999987 33
Q ss_pred CC---------------hHHHHHHHHhCCCCCC-------------CC--------CCchh-hhHH--------------
Q psy6409 1570 GF---------------EPDVQKILEYMPVTNL-------------KP--------DTEDA-EDEN-------------- 1598 (1832)
Q Consensus 1570 gf---------------~~~l~~Il~~l~~~~~-------------~~--------~~~~~-~~~~-------------- 1598 (1832)
++ ...+..++..++.... .. -++.. ....
T Consensus 219 artPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~ 298 (997)
T 2ipc_A 219 ARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENM 298 (997)
T ss_dssp TTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCH
T ss_pred CCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhH
Confidence 32 1245566776653210 00 00000 0000
Q ss_pred --------HHHhhhc------------------------------------------------------------cccCc
Q psy6409 1599 --------KLLANYN------------------------------------------------------------SKKKY 1610 (1832)
Q Consensus 1599 --------~l~~~~~------------------------------------------------------------~~~~~ 1610 (1832)
.+.+... .-+.+
T Consensus 299 ~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y 378 (997)
T 2ipc_A 299 ELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLY 378 (997)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhC
Confidence 0000000 00122
Q ss_pred ceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhH
Q psy6409 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1611 ~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~ 1687 (1832)
..+.+||.|.......+...|--+ +.+-+...+....... ..+.....|..++++-+... .+.||||+|.|+..
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred hHheecCCCchHHHHHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 356789999988777777766544 2233455555444432 34456677887777655432 57899999999999
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q psy6409 1688 ADVLAKGLE----------------------------------------------------------------------- 1696 (1832)
Q Consensus 1688 a~~l~~~L~----------------------------------------------------------------------- 1696 (1832)
.+.|+..|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999999998
Q ss_pred -----HcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC-------------------C-------
Q psy6409 1697 -----KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------S------- 1745 (1832)
Q Consensus 1697 -----~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v-------------------~------- 1745 (1832)
..|++..++++.....+.+.|-+.-+.| .|-|||+.++||.||-=- .
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 4566766777664444433333333333 489999999999998421 1
Q ss_pred ------------------------------------------------EEEEeCCCCCHHHHHHHhcccccCCCccEEEE
Q psy6409 1746 ------------------------------------------------MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777 (1832)
Q Consensus 1746 ------------------------------------------------~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~ 1777 (1832)
+||-...+.|..-=-|-.||+||-|.+|.+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 78888889999999999999999999999999
Q ss_pred EeeCCC
Q psy6409 1778 FCTKDD 1783 (1832)
Q Consensus 1778 ~~~~~d 1783 (1832)
|++-+|
T Consensus 694 ~LSLeD 699 (997)
T 2ipc_A 694 YVSFDD 699 (997)
T ss_dssp EEESSS
T ss_pred EEECCh
Confidence 988776
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=280.49 Aligned_cols=321 Identities=17% Similarity=0.198 Sum_probs=215.8
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
.++|||.+++.+++ .+.+.|+..+||+|||+.++..+...+...+. .......+|||+|+ .|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-----~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-----ccCCCCcEEEEecH-HHHHH
Confidence 79999999999875 34679999999999999987777665544321 11123569999997 89999
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHH--HHHh-h-----cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQ--GFRL-R-----LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~--~~~l-~-----~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
+..++.+++.. .+.++.+.||...... .... . ...+|+|+|++.+.... ..+....+++||+||||++-
T Consensus 129 W~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 129 WYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecC
Confidence 99999998654 4566677776543211 1111 1 13789999999886432 23444578999999999885
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHH-H------------------HHH
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV-E------------------RLA 1628 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~-~------------------~~~ 1628 (1832)
... ......+..+. ....+++|||+-..- . .+.
T Consensus 206 n~~--~~~~~al~~l~--------------------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~ 257 (644)
T 1z3i_X 206 NSD--NQTYLALNSMN--------------------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFK 257 (644)
T ss_dssp TTC--HHHHHHHHHHC--------------------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHH
T ss_pred Chh--hHHHHHHHhcc--------------------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHH
Confidence 432 12222222221 134678888863210 0 000
Q ss_pred HHhc-----------------------------CCCcEEEEccc---CCCCcceEEEEEE-c------------------
Q psy6409 1629 RSYL-----------------------------RRPATVYIGSV---GKPTERIEQIVYI-L------------------ 1657 (1832)
Q Consensus 1629 ~~~l-----------------------------~~p~~v~i~~~---~~~~~~i~q~~~~-~------------------ 1657 (1832)
..|. -.|..+..... ...+....+.+.. .
T Consensus 258 ~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~ 337 (644)
T 1z3i_X 258 KRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV 337 (644)
T ss_dssp HHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG
T ss_pred HhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 0000 00000000000 0000001111100 0
Q ss_pred ----------------------------------------------------------chhhHHHHHHHHHHh---CCCC
Q psy6409 1658 ----------------------------------------------------------SEQDKRKKLMEVLNR---GVKK 1676 (1832)
Q Consensus 1658 ----------------------------------------------------------~~~~k~~~l~~~l~~---~~~~ 1676 (1832)
....|...+..++.. ....
T Consensus 338 ~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~ 417 (644)
T 1z3i_X 338 ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSD 417 (644)
T ss_dssp GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCC
Confidence 012233333333332 3567
Q ss_pred cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcccccccCCCCCCCEEEEeCCC
Q psy6409 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMA 1753 (1832)
Q Consensus 1677 ~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATdvl~~GIDip~v~~VI~~d~P 1753 (1832)
++||||++...++.+...|...|+.+..+||+++..+|..+++.|++|... +||+|+++++|||++.+++||+||+|
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC
T ss_pred EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999998764 89999999999999999999999999
Q ss_pred CCHHHHHHHhcccccCCCcc--EEEEEeeCC
Q psy6409 1754 KSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1782 (1832)
Q Consensus 1754 ~s~~~yiQRiGRaGR~g~~G--~ai~~~~~~ 1782 (1832)
+|+..|.|++||++|.|+.. .++.|+...
T Consensus 498 wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 498 WNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999765 455567766
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=277.85 Aligned_cols=322 Identities=16% Similarity=0.200 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHH---------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 749 AEPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il---------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
..++|+|.+++..+. .++..|++.+||+|||++++..+...+...+. ......++|||||+ .|+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-----~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-----ccCCCCcEEEEecH-HHHH
Confidence 369999999999874 34679999999999999988777655433211 11123569999997 8999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHH--HHHHh------cCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQ--GFRLR------LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~--~~~l~------~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
|+..++.+++.. .+.++.++||...... ..... ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 999999998654 5667777777543221 11111 14789999999986432 2334457899999999988
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH-H------------------HHH
Q psy6409 892 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-V------------------ERL 952 (1832)
Q Consensus 892 ~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~-v------------------~~~ 952 (1832)
-+.. ......+..+. ....+++|||.-.. + ..|
T Consensus 205 kn~~--~~~~~al~~l~--------------------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F 256 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN--------------------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEF 256 (644)
T ss_dssp CTTC--HHHHHHHHHHC--------------------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHH
T ss_pred CChh--hHHHHHHHhcc--------------------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHH
Confidence 6432 12222222221 13456777774110 0 000
Q ss_pred HHHhcC-----------------------------CCcEEEEcc--c-CCCCcceEEEEE--------------------
Q psy6409 953 ARSYLR-----------------------------RPATVYIGS--V-GKPTERIEQIVY-------------------- 980 (1832)
Q Consensus 953 ~~~~l~-----------------------------~p~~v~~~~--~-~~~~~~i~q~~~-------------------- 980 (1832)
...|.. .|..+.-.. . ...+....+.+.
T Consensus 257 ~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~ 336 (644)
T 1z3i_X 257 KKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKP 336 (644)
T ss_dssp HHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCG
T ss_pred HHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 000000 000000000 0 000000011000
Q ss_pred ---------------------------------------------------------EcchhhHHHHHHHHHHc---CCC
Q psy6409 981 ---------------------------------------------------------ILSEQDKRKKLMEVLNR---GVK 1000 (1832)
Q Consensus 981 ---------------------------------------------------------~~~~~~k~~~L~~~l~~---~~~ 1000 (1832)
......|...+..++.. ..+
T Consensus 337 ~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~ 416 (644)
T 1z3i_X 337 VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTS 416 (644)
T ss_dssp GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCC
Confidence 00112344444444432 356
Q ss_pred CCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc---EEEecccccccCCCcCcCEEEEcCC
Q psy6409 1001 KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDM 1077 (1832)
Q Consensus 1001 ~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~---VLVaTdv~~rGlDip~v~~VI~~d~ 1077 (1832)
.++||||+....++.+...|...|+.+..+||++++.+|..+++.|++|... +||+|+++++|||++++++||+||+
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 496 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC
T ss_pred CEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC
Confidence 7999999999999999999999999999999999999999999999998764 8999999999999999999999999
Q ss_pred CCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1078 AKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
|.++..|.|++||++|.|+.. .++.|++.+
T Consensus 497 ~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 497 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999999999764 566777776
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=287.94 Aligned_cols=327 Identities=18% Similarity=0.229 Sum_probs=223.4
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..++|||.+++.+++ .+++.|++.+||+|||+.++..+...+.. ......+||||| ..|+.|+..+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~---------~~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA---------RRQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH---------HSCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh---------cCCCCCEEEEEC-chHHHHHHHH
Confidence 379999999999876 78899999999999999876666544322 123445899999 7889999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHH------------hhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFR------------LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~------------l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
+.+++. +++++.++|+......... ....++|+|+|++.+..... .+....+++|||||||++-
T Consensus 305 ~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 305 FEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGC
T ss_pred HHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhc
Confidence 999864 4667777776654433221 12357899999998865432 1233468999999999985
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHH---HHHHhcC----------
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVER---LARSYLR---------- 1633 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~---~~~~~l~---------- 1633 (1832)
..+ ..+...+..+ .....+++|||+-. .+.+ ++.....
T Consensus 381 n~~--s~~~~~l~~l--------------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~ 432 (800)
T 3mwy_W 381 NAE--SSLYESLNSF--------------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID 432 (800)
T ss_dssp CSS--SHHHHHHTTS--------------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-------
T ss_pred Cch--hHHHHHHHHh--------------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhc
Confidence 322 2233333222 12345778888621 1111 1111000
Q ss_pred -------------------CCcEEEEcccC---CCCcceEEEEEE-----------------------------------
Q psy6409 1634 -------------------RPATVYIGSVG---KPTERIEQIVYI----------------------------------- 1656 (1832)
Q Consensus 1634 -------------------~p~~v~i~~~~---~~~~~i~q~~~~----------------------------------- 1656 (1832)
.|..+...... ..+......+.+
T Consensus 433 ~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~ 512 (800)
T 3mwy_W 433 FENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNI 512 (800)
T ss_dssp --CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHH
T ss_pred ccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 01111000000 000000000000
Q ss_pred ---------------------------------------cchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHH
Q psy6409 1657 ---------------------------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGL 1695 (1832)
Q Consensus 1657 ---------------------------------------~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L 1695 (1832)
.....|...|..++... .+.++||||+....++.|...|
T Consensus 513 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L 592 (800)
T 3mwy_W 513 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYL 592 (800)
T ss_dssp HHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHH
Confidence 00123555566666543 5679999999999999999999
Q ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc
Q psy6409 1696 EKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1772 (1832)
Q Consensus 1696 ~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~ 1772 (1832)
...|+.+..+||+++..+|..+++.|++|... +|++|.+++.|||++.+++||+||+|+|+..++|++||++|.|+.
T Consensus 593 ~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 672 (800)
T 3mwy_W 593 SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672 (800)
T ss_dssp HHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC
T ss_pred HhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC
Confidence 99999999999999999999999999986654 999999999999999999999999999999999999999999876
Q ss_pred c--EEEEEeeCC--ChhHHHHHHH
Q psy6409 1773 G--LAVSFCTKD--DSHLFYDLKQ 1792 (1832)
Q Consensus 1773 G--~ai~~~~~~--d~~~~~~l~~ 1792 (1832)
. .++.|++.. +..++.....
T Consensus 673 k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 673 NHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp SCEEEEEEEETTSHHHHHHHHHHH
T ss_pred ceEEEEEEecCCCHHHHHHHHHHH
Confidence 4 455567776 3444544443
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=286.18 Aligned_cols=317 Identities=19% Similarity=0.222 Sum_probs=219.3
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+++|+|.+++..++ .+++.|++.+||+|||++++..+...+.. ......+||||| ..|+.|+..+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~---------~~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA---------RRQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH---------HSCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh---------cCCCCCEEEEEC-chHHHHHHHH
Confidence 379999999998766 68899999999999999977666543321 123456899999 7889999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHH------------hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRL------------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l------------~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|.+++. ++++..++|+.......... ....+|+|+|++.+..... .+....+++|||||||++-
T Consensus 305 ~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 305 FEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGC
T ss_pred HHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhc
Confidence 999864 46677777765543332211 1247899999999865432 2233468999999999985
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC----hHHHHHHHHhcC----------
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP----PAVERLARSYLR---------- 958 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~----~~v~~~~~~~l~---------- 958 (1832)
+. .......+..+ .....+++|||.- ..+..+......
T Consensus 381 n~--~s~~~~~l~~l--------------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~ 432 (800)
T 3mwy_W 381 NA--ESSLYESLNSF--------------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID 432 (800)
T ss_dssp CS--SSHHHHHHTTS--------------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-------
T ss_pred Cc--hhHHHHHHHHh--------------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhc
Confidence 42 22223333222 1234577788851 111111111110
Q ss_pred -------------------CCcEEEEccc--C-CCCcceEEEEEE-----------------------------------
Q psy6409 959 -------------------RPATVYIGSV--G-KPTERIEQIVYI----------------------------------- 981 (1832)
Q Consensus 959 -------------------~p~~v~~~~~--~-~~~~~i~q~~~~----------------------------------- 981 (1832)
.|..+..... . ..+......+..
T Consensus 433 ~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~ 512 (800)
T 3mwy_W 433 FENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNI 512 (800)
T ss_dssp --CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHH
T ss_pred ccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 0111100000 0 000000000000
Q ss_pred ---------------------------------------cchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHH
Q psy6409 982 ---------------------------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGL 1020 (1832)
Q Consensus 982 ---------------------------------------~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L 1020 (1832)
+....|...|.+++... .+.++||||+....++.|...|
T Consensus 513 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L 592 (800)
T 3mwy_W 513 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYL 592 (800)
T ss_dssp HHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHH
Confidence 01133555666666543 5679999999999999999999
Q ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC---cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC
Q psy6409 1021 EKLGYNACTLHGGKGQEQRELALNSLKGGSK---DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1097 (1832)
Q Consensus 1021 ~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~---~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~ 1097 (1832)
...|+.+..+||+++..+|..+++.|++|.. .+|++|.+++.|||++.+++||+||+|.++..++|++||++|.|+.
T Consensus 593 ~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 672 (800)
T 3mwy_W 593 SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672 (800)
T ss_dssp HHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC
T ss_pred HhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998655 4999999999999999999999999999999999999999999876
Q ss_pred --cEEEEEecCC
Q psy6409 1098 --GLAVSFCTKD 1107 (1832)
Q Consensus 1098 --G~ai~~~~~~ 1107 (1832)
..++.|++.+
T Consensus 673 k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 673 NHVMVYRLVSKD 684 (800)
T ss_dssp SCEEEEEEEETT
T ss_pred ceEEEEEEecCC
Confidence 4567778776
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=280.76 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=135.5
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..|+++||||+++...... .......+........ .+.......+...++..+.. ..+.++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 4789999999986543221 1111111111111111 11222223444455444433 246789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-----CCCHhHHHHH
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1087 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yvQr 1087 (1832)
|+.+++.|...|+.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
+|||||. ..|.|++|+++.+..+...+.+.
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHHHHH
Confidence 9999998 57999999999988777776654
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-24 Score=238.80 Aligned_cols=166 Identities=39% Similarity=0.636 Sum_probs=133.9
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcC
Q psy6409 953 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032 (1832)
Q Consensus 953 ~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg 1032 (1832)
...|+.+|..+.++........+.|.+..+....|...|.+++... ++++||||+++..++.++..|...|+.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3568889999998888778889999999999999999999999864 458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchH
Q psy6409 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1111 (1832)
Q Consensus 1033 ~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~ 1111 (1832)
+|++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|..|.|++|+++. +..+
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 6666
Q ss_pred HHHHHHHH
Q psy6409 1112 FYDLKQMM 1119 (1832)
Q Consensus 1112 ~~~l~~~l 1119 (1832)
+..+.+.+
T Consensus 167 ~~~l~~~l 174 (191)
T 2p6n_A 167 LMDLKALL 174 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=272.61 Aligned_cols=172 Identities=21% Similarity=0.266 Sum_probs=132.8
Q ss_pred cceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhH
Q psy6409 1610 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1610 ~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~ 1687 (1832)
..|+++||||+++..... ........+.+.+.... .+.......+...++..+... .+.++||||+|+..
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999998654222 11111111111111111 122223334445555544432 46799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC-----CCCHHHHHHH
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1762 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-----P~s~~~yiQR 1762 (1832)
|+.|+..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
+|||||. ..|.|++|+++.+..+...+
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 9999998 68999999999876555443
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=229.03 Aligned_cols=152 Identities=41% Similarity=0.602 Sum_probs=144.1
Q ss_pred CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC
Q psy6409 971 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~ 1050 (1832)
...++.|.+..+....|...|.+++......++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|.
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34568999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1051 ~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
++|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++.+..++..+.+.+...
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998876544
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=228.41 Aligned_cols=151 Identities=41% Similarity=0.608 Sum_probs=143.1
Q ss_pred CCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC
Q psy6409 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g 1724 (1832)
....++.|.+..+....|...|..++......++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 34556889999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988763
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=234.34 Aligned_cols=164 Identities=41% Similarity=0.654 Sum_probs=139.9
Q ss_pred CCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
....++.|.+..+....|...|.+++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567899999999999999999999876 57899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCP 1803 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~ 1803 (1832)
|+++|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+...+..+.+.+.... +.+|
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~ 173 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-QEVP 173 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT-CCCC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888774 7899
Q ss_pred hhhcCC
Q psy6409 1804 PELLNH 1809 (1832)
Q Consensus 1804 ~~L~~h 1809 (1832)
++|.+.
T Consensus 174 ~~l~~~ 179 (185)
T 2jgn_A 174 SWLENM 179 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=229.34 Aligned_cols=160 Identities=29% Similarity=0.550 Sum_probs=141.4
Q ss_pred ceEEEEEEcchhh-HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1649 RIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1649 ~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+.|.+..+.... |...|.+++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5678887777766 999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhc
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1807 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~ 1807 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+...+... ...+|..+.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ-IEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC-CEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC-ccccCccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877544 466666654
Q ss_pred CC
Q psy6409 1808 NH 1809 (1832)
Q Consensus 1808 ~h 1809 (1832)
+.
T Consensus 162 ~~ 163 (165)
T 1fuk_A 162 TL 163 (165)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=230.08 Aligned_cols=160 Identities=32% Similarity=0.533 Sum_probs=142.2
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1647 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1647 ~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
...+.|.+..+....|...|.+++......++||||+++.+|+.++..|...++.+..+||+|++.+|..+++.|++|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35678899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcCCCCCCChh
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPE 1805 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~~ 1805 (1832)
+|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++. +...+..+.+.+. .+...+|..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 161 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE-VNISELPDE 161 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC-CCEEECC--
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh-cchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999986 4566777776653 334666665
Q ss_pred hc
Q psy6409 1806 LL 1807 (1832)
Q Consensus 1806 L~ 1807 (1832)
+.
T Consensus 162 ~~ 163 (172)
T 1t5i_A 162 ID 163 (172)
T ss_dssp --
T ss_pred hc
Confidence 43
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=228.48 Aligned_cols=152 Identities=30% Similarity=0.494 Sum_probs=137.8
Q ss_pred CCcceEEEEEEcchhh-HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC
Q psy6409 971 PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~~~-k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G 1049 (1832)
....+.|.+..+.... |...|..++.....+++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3457888888887655 999999999888788999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1050 SKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1050 ~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
.++|||||+++++|||+|++++||+||+| .+..+|+||+|||||.|..|.|++|+++.+...+..+.+.+...
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 99999999999999999999999999999988888888876544
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=227.75 Aligned_cols=150 Identities=29% Similarity=0.491 Sum_probs=137.0
Q ss_pred CCcceEEEEEEcchhh-HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC
Q psy6409 1646 PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g 1724 (1832)
....+.|.+..+.... |...|..++.....+++||||+++.+|+.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3457888888887655 999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
+++|||||+++++|+|+|++++||+||+| .+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999 999999999999999999999999999999988888888764
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=227.82 Aligned_cols=150 Identities=32% Similarity=0.541 Sum_probs=139.2
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 972 ~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
...+.|.+..+....|...|.+++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|.+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35688899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHHhc
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~ 1121 (1832)
+|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|..|.+++|+++. +...+..+.+.+..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999976 55677777776543
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=224.80 Aligned_cols=149 Identities=30% Similarity=0.563 Sum_probs=134.1
Q ss_pred ceEEEEEEcchhh-HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 974 RIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 974 ~i~q~~~~~~~~~-k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+.|.+..+.... |...|.+++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5778888887766 999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|..|.|++|+++++...+..+.+.+..+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999988888887765443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=233.47 Aligned_cols=148 Identities=32% Similarity=0.492 Sum_probs=137.9
Q ss_pred eEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VL 1054 (1832)
+.+....+....|...|.+++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 45666777888999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1055 VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|||+++++|||+|+|++||+||+|.+..+|+||+|||||.|..|.|++|+++.+...+..+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999998876543
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=227.41 Aligned_cols=152 Identities=43% Similarity=0.688 Sum_probs=128.8
Q ss_pred CCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 970 KPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 970 ~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
....++.|.+..+....|...|.+++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567999999999999999999999876 57799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
|.++|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|..|.|++|+++.+...+..+.+.+..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998888888877644
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=228.91 Aligned_cols=146 Identities=32% Similarity=0.500 Sum_probs=135.7
Q ss_pred eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
+.+....+....|...|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34556667788999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
|||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+.
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999988888887764
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=238.95 Aligned_cols=149 Identities=32% Similarity=0.491 Sum_probs=136.7
Q ss_pred ceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 974 ~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
.+.+.+..+....|...|.+++....+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 36778888889999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|..|.|++|+++.+..++..+.+.+...
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998877544
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=234.45 Aligned_cols=147 Identities=32% Similarity=0.498 Sum_probs=134.7
Q ss_pred ceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1649 ~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
.+.+.+..+....|...|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 35677888888999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999988888887764
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-22 Score=230.63 Aligned_cols=165 Identities=20% Similarity=0.194 Sum_probs=129.8
Q ss_pred CCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhc-
Q psy6409 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF- 87 (1832)
Q Consensus 9 ~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~- 87 (1832)
..+++|.++||.+..|++++++||||||||.+|.+|++..+...+. ..++.+|+++|||+||.|+.+.+...
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999876654321 23568999999999999998877654
Q ss_pred CCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchh-hcCCCh-HHHHHHHhh
Q psy6409 88 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-IDMGFE-PDVQKILEY 165 (1832)
Q Consensus 88 ~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~-l~~gf~-~~~~~i~~~ 165 (1832)
+...+......... +......+++|+|+|||||.+++.. .++++++|||||||+| +++||. ..++.|+..
T Consensus 134 ~~~~~~~~g~~~~~-----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 134 GEEPGKSCGYSVRF-----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TCCTTSSEEEEETT-----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEeech-----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 33333333221111 1111135689999999999999987 4899999999999998 999998 577888776
Q ss_pred CCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCccccccccc
Q psy6409 166 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMP 214 (1832)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1832)
.|. +|+++||||++++.+.+||.
T Consensus 206 ~~~--------------------------~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 206 YPE--------------------------VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp CTT--------------------------SEEEEEECSSCCHHHHHHTT
T ss_pred CCC--------------------------CeEEEEecCCCHHHHHHHcC
Confidence 653 49999999999998877774
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-22 Score=226.60 Aligned_cols=150 Identities=21% Similarity=0.201 Sum_probs=117.6
Q ss_pred ccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHH-HHHH
Q psy6409 5 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ-IEEE 83 (1832)
Q Consensus 5 ~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~q-i~~~ 83 (1832)
.+.-+|+|.|.++|+.++.|++++++||||||||++|++|++..+..... ...++.+|||+||++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH------TTCCCCEEEEESSHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc------ccCCCcEEEEECHHHHHHHHHHHH
Confidence 34558999999999999999999999999999999999999976644211 1346789999999999999 7788
Q ss_pred HHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhcc------ccCCcceEEEEcccchhhcCCChH
Q psy6409 84 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY------LVLNQCTYIVLDEADRMIDMGFEP 157 (1832)
Q Consensus 84 ~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~------~~l~~~~~~vlDEad~~l~~gf~~ 157 (1832)
+++++.. ++.+.+++|+.....+...+..+++|+|+||++|..++..+. +.+.++++||+||||+|++.||-.
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888765 778889999988877777777789999999999999998753 678899999999999999988777
Q ss_pred HHHH
Q psy6409 158 DVQK 161 (1832)
Q Consensus 158 ~~~~ 161 (1832)
.+..
T Consensus 182 ~~~~ 185 (216)
T 3b6e_A 182 NIMR 185 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-23 Score=225.63 Aligned_cols=147 Identities=39% Similarity=0.590 Sum_probs=135.6
Q ss_pred ceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 974 RIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 974 ~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+.|.+..+.. ..|...|.+++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45666777776 78889999998877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHh
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999999999999998888777776543
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-23 Score=224.92 Aligned_cols=146 Identities=39% Similarity=0.600 Sum_probs=135.6
Q ss_pred ceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1649 RIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1649 ~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+.|.+..+.. ..|...|.+++......++||||+++.+|+.++..|...++.+..+||+|++.+|..+++.|++|+++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 35566666766 78888899998877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 9999999999999999999999999999999999999999999999999999999988888887654
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=210.88 Aligned_cols=149 Identities=20% Similarity=0.191 Sum_probs=112.8
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH-HHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ-IEE 823 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q-i~~ 823 (1832)
..+...|+|+|.++++.++.++++++++|||+|||++|+++++..+.... ....++++||++|+++|+.| +.+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------KASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------HTTCCCCEEEEESSHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------cccCCCcEEEEECHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999987764321 11346789999999999999 778
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc------cccCCceeEEEecchhhhcCCCh
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY------LVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~------~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.+..+... ++.+..++|+.........+..+++|+|+||++|.+.+.... ..+..+++|||||||++.+.++.
T Consensus 102 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 102 EFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp THHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 88887654 788888998877655544555579999999999998887653 56789999999999999877665
Q ss_pred HHH
Q psy6409 898 PDV 900 (1832)
Q Consensus 898 ~~i 900 (1832)
..+
T Consensus 181 ~~~ 183 (216)
T 3b6e_A 181 NNI 183 (216)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-20 Score=211.34 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=135.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
.+.+.+...+...++++|.++++.+..|++++++||||||||+++.++++..+.... ...+..++|++|+++|
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------~~~~~~~l~~~p~~~l 121 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------RAAECNIVVTQPRRIS 121 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------CGGGCEEEEEESSHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------CCCceEEEEeccchHH
Confidence 344444555566789999999999999999999999999999999999887653311 1235689999999999
Q ss_pred HHHHHHHHHHh-cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh-hcCC
Q psy6409 818 AQQIEEETNKF-GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-IDMG 895 (1832)
Q Consensus 818 a~Qi~~~~~~~-~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l-~d~g 895 (1832)
|.|+.+.+... +...+..++........ ....+++|+|+|||+|++++.. .++++++|||||||++ ++.+
T Consensus 122 a~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~ 193 (235)
T 3llm_A 122 AVSVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTD 193 (235)
T ss_dssp HHHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHH
T ss_pred HHHHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchH
Confidence 99999888754 33455555543332211 1113588999999999999876 4899999999999986 7766
Q ss_pred Ch-HHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 896 FE-PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 896 f~-~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
|. ..+..++... ...|+++||||++... ++..|...|.
T Consensus 194 ~~~~~l~~i~~~~--------------------------~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 194 FLLVVLRDVVQAY--------------------------PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHC--------------------------TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHHhhC--------------------------CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 65 3555555443 2478999999999765 7777766665
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-20 Score=236.44 Aligned_cols=321 Identities=14% Similarity=0.169 Sum_probs=174.0
Q ss_pred cCCCCCcHHHHHHHHH----HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~----il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
.|| +|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 477 899999998654 4578999999999999999999999742 57899999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEcCCch--------H------------------------HHH---------------HHHhc
Q psy6409 822 EEETNKFGTPLGIRTVLVVGGLSR--------E------------------------EQG---------------FRLRL 854 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~Gg~~~--------~------------------------~~~---------------~~l~~ 854 (1832)
.+.+..+ ++++..+.|.... . +.+ .....
T Consensus 68 ~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 68 YKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHHGGG----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 9888874 4555544432110 0 000 01123
Q ss_pred CCceeecCHHHHHHHHHccccc-------cCCceeEEEecchhhhcCC-------ChHHHHHHHHhCC------------
Q psy6409 855 GCEIVIATPGRLIDVLENRYLV-------LNQCTYIVLDEADRMIDMG-------FEPDVQKILEYMP------------ 908 (1832)
Q Consensus 855 ~~~IlV~TP~rL~d~l~~~~~~-------l~~~~~lViDEaH~l~d~g-------f~~~i~~Il~~l~------------ 908 (1832)
.++|||+|+..|++.+.++.+. +....+|||||||.|.+.. -...+..++..+.
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 223 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKK 223 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHH
Confidence 5799999999999866554332 4567899999999984310 0011111111100
Q ss_pred -------------C---C------CCCCCCch--hHHHHHHH--------------------Hhhc-------------c
Q psy6409 909 -------------V---T------NLKPDTED--AEDENKLL--------------------ANYN-------------S 931 (1832)
Q Consensus 909 -------------~---~------~~~~~~~~--~~~~~~ll--------------------~~~~-------------~ 931 (1832)
. . ...+.... ......++ ..+. .
T Consensus 224 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 303 (540)
T 2vl7_A 224 VKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVK 303 (540)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 0 0 00000000 00111111 0000 0
Q ss_pred ------------ccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc-------ch----hhHH
Q psy6409 932 ------------KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-------SE----QDKR 988 (1832)
Q Consensus 932 ------------~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~-------~~----~~k~ 988 (1832)
......+|++||||++... +...|. ..+... .. ..+.+... .. ..-.
T Consensus 304 ~P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f~-----~~~~~~---~g-~~~~~~~~~l~s~f~~r~~~~~~~~ 373 (540)
T 2vl7_A 304 VPSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSYK-----IVVNES---YG-RGEYYYCPNVTSELRKRNSNIPIYS 373 (540)
T ss_dssp ECSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEEE-----EECCCC----C-CCEEEECTTCCCCGGGHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhcC-----Cchhhe---ec-CCcceeccccCCCcccccCHHHHHH
Confidence 0001225999999987210 001110 111000 00 00111100 01 1122
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEE--ecccccccCCC
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV--ATDVAGRGIDI 1066 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLV--aTdv~~rGlDi 1066 (1832)
..+.+++. ..++.+|||++|....+.+++.|.. .. ...+|.. ..|..+++.|++|. .||+ ||+.+++|||+
T Consensus 374 ~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 23333443 3566899999999999999988864 33 3556554 46889999999875 5777 88999999999
Q ss_pred cC----cCEEEEcCCCCC-H-----------------------------hHHHHHhcccccCCCC-cEEEEEe
Q psy6409 1067 KD----VSMVINYDMAKS-I-----------------------------EDYTHRIGRTGRAGKE-GLAVSFC 1104 (1832)
Q Consensus 1067 p~----v~~VI~~d~p~s-~-----------------------------~~yvQr~GRaGR~g~~-G~ai~~~ 1104 (1832)
|+ +++||++++|.. + ..+.|.+||+-|...+ |. +.++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~ll 518 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLC 518 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEE
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEE
Confidence 98 889999999841 1 2356899999997544 54 3344
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=229.21 Aligned_cols=323 Identities=15% Similarity=0.186 Sum_probs=173.0
Q ss_pred cCCCCCcHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~----il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 467 899999998654 4578999999999999999999998742 56899999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEECCcc--------hH------------------------HH---------------HHHhhc
Q psy6409 1497 EEETNKFGTPLGIRTVLVVGGLS--------RE------------------------EQ---------------GFRLRL 1529 (1832)
Q Consensus 1497 ~~~~~~~~~~~g~~v~~l~gg~~--------~~------------------------~~---------------~~~l~~ 1529 (1832)
.+.+..+ +++++.+.|... .. .. ......
T Consensus 68 ~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 68 YKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHHGGG----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 9888775 444544443210 00 00 001124
Q ss_pred CCcEEEeCHHHHHHHHHcccc-------ccCCceeEEEccchhhhcCC-------ChHHHHHHH----------------
Q psy6409 1530 GCEIVIATPGRLIDVLENRYL-------VLNQCTYIVLDEADRMIDMG-------FEPDVQKIL---------------- 1579 (1832)
Q Consensus 1530 ~~~IiVaTP~rl~~~l~~~~~-------~l~~v~llViDEaH~ll~~g-------f~~~l~~Il---------------- 1579 (1832)
+++|||+|+..|.+-.....+ .+....+|||||||+|.+.. -...+..++
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 223 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKK 223 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHH
Confidence 579999999999875543332 24577899999999984310 001111111
Q ss_pred ---------HhC----CCC-----CCCCCCch--hhhHHHHH--------------------hhhc-------------c
Q psy6409 1580 ---------EYM----PVT-----NLKPDTED--AEDENKLL--------------------ANYN-------------S 1606 (1832)
Q Consensus 1580 ---------~~l----~~~-----~~~~~~~~--~~~~~~l~--------------------~~~~-------------~ 1606 (1832)
..+ +.. ...+.... ......+. ..+. .
T Consensus 224 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 303 (540)
T 2vl7_A 224 VKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVK 303 (540)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 111 000 00000000 00000000 0000 0
Q ss_pred ------------ccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEE------cch-----hhHH
Q psy6409 1607 ------------KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI------LSE-----QDKR 1663 (1832)
Q Consensus 1607 ------------~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~------~~~-----~~k~ 1663 (1832)
......+|++|||+++... +...|. ..+ ..+... .+.+.. ... ..-.
T Consensus 304 ~P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f~-----~~~---~~~~g~-~~~~~~~~l~s~f~~r~~~~~~~~ 373 (540)
T 2vl7_A 304 VPSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSYK-----IVV---NESYGR-GEYYYCPNVTSELRKRNSNIPIYS 373 (540)
T ss_dssp ECSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEEE-----EEC---CCC-CC-CEEEECTTCCCCGGGHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhcC-----Cch---hheecC-CcceeccccCCCcccccCHHHHHH
Confidence 0011224888999987210 000110 000 000000 011110 011 1112
Q ss_pred HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEE--EcccccccCCC
Q psy6409 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV--ATDVAGRGIDI 1741 (1832)
Q Consensus 1664 ~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLV--ATdvl~~GIDi 1741 (1832)
..+..++. ...+.+|||++|....+.++..|.. .. ...++.. ..|..+++.|+.|. .||+ ||..+++|||+
T Consensus 374 ~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 22333343 3567899999999999999988754 33 3455543 46889999999865 6777 88999999999
Q ss_pred CC----CCEEEEeCCCCC----H--------------------------HHHHHHhcccccCC-CccEEEEEeeC
Q psy6409 1742 KD----VSMVINYDMAKS----I--------------------------EDYTHRIGRTGRAG-KEGLAVSFCTK 1781 (1832)
Q Consensus 1742 p~----v~~VI~~d~P~s----~--------------------------~~yiQRiGRaGR~g-~~G~ai~~~~~ 1781 (1832)
|+ +.+||++++|.. + ..+.|.+||+-|.. ..|. ++++++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 97 899999998841 1 23569999999964 4454 444443
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=215.70 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=128.3
Q ss_pred CCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcC
Q psy6409 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 88 (1832)
Q Consensus 9 ~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~ 88 (1832)
+|+|.|.+||+.++.+++.+++||||||||++|++++...+.. ..+.+|||+||++|+.|+.+++++++
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999998765422 23479999999999999999999999
Q ss_pred CCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhCCc
Q psy6409 89 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 168 (1832)
Q Consensus 89 ~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~~ 168 (1832)
....+..+.++||..... ....+++|+|+||++|... ....+.++++|||||||+|.+ +.+..|+..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp SCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred ccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 888888999999987653 3346789999999988554 334568899999999999984 588888888742
Q ss_pred CCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcc
Q psy6409 169 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 207 (1832)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1832)
. .|+++||||.+..
T Consensus 252 ~-------------------------~~~l~lSATp~~~ 265 (282)
T 1rif_A 252 C-------------------------MFKFGLSGSLRDG 265 (282)
T ss_dssp C-------------------------CEEEEECSSCCTT
T ss_pred C-------------------------CeEEEEeCCCCCc
Confidence 1 5999999998654
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-19 Score=212.75 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=125.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
.+|+|+|.++++.++.+++.|+++|||||||++|++++...+.. .+.++|||+||++|+.|+.+.+.++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHh
Confidence 38999999999999998889999999999999999888765421 2348999999999999999999999
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
+...+..+..++||..... ....+++|+|+||+.+... ....+..+++|||||||++.+ +.+..++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~ 250 (282)
T 1rif_A 181 RLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (282)
T ss_dssp TSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCT
T ss_pred cccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhh
Confidence 8777778888888876433 2224689999999987433 233578899999999999874 46666665552
Q ss_pred CCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH
Q psy6409 909 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952 (1832)
Q Consensus 909 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~ 952 (1832)
...+++++|||+++....+
T Consensus 251 -------------------------~~~~~l~lSATp~~~~~~~ 269 (282)
T 1rif_A 251 -------------------------NCMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp -------------------------TCCEEEEECSSCCTTSTTH
T ss_pred -------------------------cCCeEEEEeCCCCCcchHH
Confidence 2478999999998764433
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=207.70 Aligned_cols=307 Identities=15% Similarity=0.108 Sum_probs=187.7
Q ss_pred CCCCCcHHHHHHHHHH----HcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIG----LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~i----l~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
|| +|+|+|.+++..+ ..|+++++.||||+|||++|++|++. .+++++|++||++|+.|+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHH
Confidence 45 7999999977654 46899999999999999999999985 2678999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEEcCCch---------------------------------HHHH------------------HH
Q psy6409 823 EETNKFGTPLGIRTVLVVGGLSR---------------------------------EEQG------------------FR 851 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~~~Gg~~~---------------------------------~~~~------------------~~ 851 (1832)
+.+..+...+++++..+.|.... .... ..
T Consensus 65 ~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~ 144 (551)
T 3crv_A 65 RDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLN 144 (551)
T ss_dssp HHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHh
Confidence 99999988888999888774321 1111 12
Q ss_pred HhcCCceeecCHHHHHHHHHcccccc-CCceeEEEecchhhhcCCCh--------HHHHHHHHhC---------------
Q psy6409 852 LRLGCEIVIATPGRLIDVLENRYLVL-NQCTYIVLDEADRMIDMGFE--------PDVQKILEYM--------------- 907 (1832)
Q Consensus 852 l~~~~~IlV~TP~rL~d~l~~~~~~l-~~~~~lViDEaH~l~d~gf~--------~~i~~Il~~l--------------- 907 (1832)
....++|||+|++.|++...+..+.+ ....+|||||||.|.+ ... ..+..++..+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~ 223 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQ 223 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999998765554333 4678999999999988 411 1222222111
Q ss_pred -CC----C-C-----CCCCCch---------------------------hHHHHHHHHhh--------------------
Q psy6409 908 -PV----T-N-----LKPDTED---------------------------AEDENKLLANY-------------------- 929 (1832)
Q Consensus 908 -~~----~-~-----~~~~~~~---------------------------~~~~~~ll~~~-------------------- 929 (1832)
.. . . ..+.... .......+..+
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~ 303 (551)
T 3crv_A 224 LREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPE 303 (551)
T ss_dssp HTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCC
T ss_pred HHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECC
Confidence 10 0 0 0000000 00000000000
Q ss_pred -----cccccc-ceEEEEEecCChHHHHHHHHhcCC-CcEEEE--cccCCCCcceEEEEEEc----c---h---hhHHHH
Q psy6409 930 -----NSKKKY-RQTVMFTATMPPAVERLARSYLRR-PATVYI--GSVGKPTERIEQIVYIL----S---E---QDKRKK 990 (1832)
Q Consensus 930 -----~~~~~~-~q~v~~SATl~~~v~~~~~~~l~~-p~~v~~--~~~~~~~~~i~q~~~~~----~---~---~~k~~~ 990 (1832)
...... ..+|++||||.+ ...+...+.-. +....+ -....+- ..+...++ + . ..-...
T Consensus 304 ~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~ 380 (551)
T 3crv_A 304 ISYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKR 380 (551)
T ss_dssp THHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHH
T ss_pred HHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHH
Confidence 000122 689999999987 44444443322 221100 0111111 12221111 1 0 111233
Q ss_pred HHHHHH---cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec--ccccccCC
Q psy6409 991 LMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT--DVAGRGID 1065 (1832)
Q Consensus 991 L~~~l~---~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT--dv~~rGlD 1065 (1832)
+.+.+. ...++.++||++|....+.+++. .+..+..-..+++ +..+++.|+...-.||+|| ..+.+|||
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD 454 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIE 454 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSC
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccc
Confidence 333322 23456899999999988888862 3544544334555 3557777854344799998 69999999
Q ss_pred Cc-----CcCEEEEcCCCC
Q psy6409 1066 IK-----DVSMVINYDMAK 1079 (1832)
Q Consensus 1066 ip-----~v~~VI~~d~p~ 1079 (1832)
+| .+..||..++|.
T Consensus 455 ~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 455 LRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CEETTEESEEEEEEESCCC
T ss_pred ccccCCcceeEEEEEcCCC
Confidence 99 377888877753
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-16 Score=202.84 Aligned_cols=336 Identities=16% Similarity=0.105 Sum_probs=201.8
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIG----LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~i----l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
|| .|+|+|.+++..+ ..|+++++.||||+|||++|++|++. .++++||++||++|+.|+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHH
Confidence 45 7999999987754 47899999999999999999999985 2678999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEECCcch---------------------------------HHHH------------------HH
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSR---------------------------------EEQG------------------FR 1526 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~---------------------------------~~~~------------------~~ 1526 (1832)
+++..+....+++++.+.|.... .... ..
T Consensus 65 ~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~ 144 (551)
T 3crv_A 65 RDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLN 144 (551)
T ss_dssp HHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHh
Confidence 99999987778888888773221 1111 12
Q ss_pred hhcCCcEEEeCHHHHHHHHHcccccc-CCceeEEEccchhhhcCCC--------hHHHHHHHHhC---------------
Q psy6409 1527 LRLGCEIVIATPGRLIDVLENRYLVL-NQCTYIVLDEADRMIDMGF--------EPDVQKILEYM--------------- 1582 (1832)
Q Consensus 1527 l~~~~~IiVaTP~rl~~~l~~~~~~l-~~v~llViDEaH~ll~~gf--------~~~l~~Il~~l--------------- 1582 (1832)
...+++|||+|++.|.+...+..+.+ ....+|||||||+|.+ .. ...+..++..+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~ 223 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQ 223 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999987754433333 4678999999999987 41 11222222111
Q ss_pred -CCC-----C-----CCCCCch---------------------------hhhHHHHHhhh--------------------
Q psy6409 1583 -PVT-----N-----LKPDTED---------------------------AEDENKLLANY-------------------- 1604 (1832)
Q Consensus 1583 -~~~-----~-----~~~~~~~---------------------------~~~~~~l~~~~-------------------- 1604 (1832)
... . ..+.... .......+..+
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~ 303 (551)
T 3crv_A 224 LREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPE 303 (551)
T ss_dssp HTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCC
T ss_pred HHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECC
Confidence 110 0 0000000 00000000000
Q ss_pred -----ccccCc-ceEEEEEccCChHHHHHHHHhcCC-CcEEE--EcccCCCCcceEEEEEE--cch------hhHHHHHH
Q psy6409 1605 -----NSKKKY-RQTVMFTATMPPAVERLARSYLRR-PATVY--IGSVGKPTERIEQIVYI--LSE------QDKRKKLM 1667 (1832)
Q Consensus 1605 -----~~~~~~-~q~v~~SATl~~~~~~~~~~~l~~-p~~v~--i~~~~~~~~~i~q~~~~--~~~------~~k~~~l~ 1667 (1832)
...... ..+|++|||+++ ...+...+.-. +.... ......+-..-...+.. ++. ..-...+.
T Consensus 304 ~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 304 ISYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp THHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 001123 689999999987 33333332222 22110 11111121111111211 110 11123333
Q ss_pred HHHH---hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc--ccccccCCCC
Q psy6409 1668 EVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT--DVAGRGIDIK 1742 (1832)
Q Consensus 1668 ~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT--dvl~~GIDip 1742 (1832)
+.+. ...++.++||++|....+.++.. .+..+..-..+++ +..+++.|+...--||+|| ..+.+|||+|
T Consensus 383 ~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 383 DYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp HHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCE
T ss_pred HHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccc
Confidence 3332 23456899999999999988863 3555544334555 4567888854444799998 6999999999
Q ss_pred -----CCCEEEEeCCCC---------------------CH---------HHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1743 -----DVSMVINYDMAK---------------------SI---------EDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1743 -----~v~~VI~~d~P~---------------------s~---------~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
.+.+||...+|. .. ..+.|-+||+=|..+.--+++++++
T Consensus 457 d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 457 NNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 478899877663 11 1234899999996544334444443
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=184.22 Aligned_cols=139 Identities=21% Similarity=0.173 Sum_probs=112.9
Q ss_pred CCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhc
Q psy6409 8 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 87 (1832)
Q Consensus 8 ~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~ 87 (1832)
-+|+|.|.+|++.++.+++++++||||+|||++++.++.. .+..+|||+||++|+.|+.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---------------~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---------------LSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---------------SCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---------------cCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 3799999999999999999999999999999999998863 1457999999999999999999996
Q ss_pred CCCccce-EEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhC
Q psy6409 88 GTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166 (1832)
Q Consensus 88 ~~~~~~~-~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~ 166 (1832)
++. ..++.|+.. ..++|+|+||++|...+.. ...++++|||||||++.+.+|. .|++.+
T Consensus 157 ----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~ 216 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMS 216 (237)
T ss_dssp ----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTC
T ss_pred ----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhc
Confidence 456 566666654 2578999999999877653 2256899999999999887654 466666
Q ss_pred CcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcc
Q psy6409 167 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 207 (1832)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1832)
+. .+.++||||....
T Consensus 217 ~~--------------------------~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 IA--------------------------PFRLGLTATFERE 231 (237)
T ss_dssp CC--------------------------SEEEEEEESCC--
T ss_pred cC--------------------------CEEEEEecCCCCC
Confidence 42 3789999997654
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-16 Score=177.54 Aligned_cols=138 Identities=21% Similarity=0.170 Sum_probs=110.4
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..|+++|.++++.++.++++|+++|||+|||++++.++.. .+.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---------------~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---------------LSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---------------SCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---------------cCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999887753 1467999999999999999999884
Q ss_pred cCCCCCe-EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~-v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++. +..+.|+.. ...+|+|+||+.+...+.. ....+++|||||||++.+..| ..++..+
T Consensus 157 ----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~ 216 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMS 216 (237)
T ss_dssp ----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTC
T ss_pred ----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhc
Confidence 677 777777654 2579999999998765542 235689999999999876543 3344433
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~ 947 (1832)
+ ..+++++|||++.
T Consensus 217 ~--------------------------~~~~l~LSATp~r 230 (237)
T 2fz4_A 217 I--------------------------APFRLGLTATFER 230 (237)
T ss_dssp C--------------------------CSEEEEEEESCC-
T ss_pred c--------------------------CCEEEEEecCCCC
Confidence 2 3578999999875
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-15 Score=191.83 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~----il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|+|.|.+.+.. +..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----------RKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------cCCeEEEECCCHHHHHHHHHHH
Confidence 689999988764 4579999999999999999999999987632 2578999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCC
Q psy6409 826 NKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~ 843 (1832)
..+....+++++.++|+.
T Consensus 72 ~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHSCCCEEECCCHH
T ss_pred HHHhhccCeEEEEEECCC
Confidence 988665677777766643
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-14 Score=185.38 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~----il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|+|.|.+++.. +..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----------RKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------cCCeEEEECCCHHHHHHHHHHH
Confidence 689999998864 4578999999999999999999999987643 2578999999999999999999
Q ss_pred HHhcCCCCCeEEEEECC
Q psy6409 1501 NKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg 1517 (1832)
..+....+++++.+.|+
T Consensus 72 ~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHSCCCEEECCCH
T ss_pred HHHhhccCeEEEEEECC
Confidence 98866557777776663
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-15 Score=174.08 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=101.0
Q ss_pred cchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHhCC-CCc-EEEe
Q psy6409 982 LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGG-SKD-ILVA 1056 (1832)
Q Consensus 982 ~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il~~F~~G-~~~-VLVa 1056 (1832)
.....|...|.+++... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .++ +|||
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888764 6789999999999999999999885 99999999999999999999999999 777 7999
Q ss_pred cccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcE--EEEEecCC
Q psy6409 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1107 (1832)
Q Consensus 1057 Tdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~--ai~~~~~~ 1107 (1832)
|+++++|||++++++||+||+|.++..|.|++||++|.|+.+. ++.|++.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999998764 46777776
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-15 Score=173.66 Aligned_cols=125 Identities=17% Similarity=0.228 Sum_probs=100.2
Q ss_pred chhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHhhCC-CCc-EEEEc
Q psy6409 1658 SEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGG-SKD-ILVAT 1732 (1832)
Q Consensus 1658 ~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~-~~~v~~lHg~ls~~~R~~il~~F~~g-~~~-VLVAT 1732 (1832)
....|...|.+++... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .++ +|+||
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567888888888765 6789999999999999999999884 99999999999999999999999998 777 78999
Q ss_pred ccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEE--EEEeeCC
Q psy6409 1733 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKD 1782 (1832)
Q Consensus 1733 dvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a--i~~~~~~ 1782 (1832)
+++++|||++.+++||+||+|+++..|+|++||++|.|+.+.+ +.|++.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 5667766
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.9e-10 Score=144.31 Aligned_cols=136 Identities=23% Similarity=0.247 Sum_probs=90.8
Q ss_pred ChhhhhhcccccCCCcEEEEecCCCcch--hHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcC
Q psy6409 11 TPIQRQAIPIGLQNRDIIGVAETGSGKT--LAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 88 (1832)
Q Consensus 11 ~p~Q~~~ip~~l~g~d~~~~a~TGsGKT--laf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~ 88 (1832)
++.|++||+.++.++++++.|++||||| ++++++.|..+.. ..++.+++++||+++|.++.+.+..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----------~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS----------SCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh----------cCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 9999999964411 245689999999999999998877654
Q ss_pred CCccceEEEEeCCcchHHHhHHhhcCccEEE-cCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhCC
Q psy6409 89 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVI-ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167 (1832)
Q Consensus 89 ~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv-~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~ 167 (1832)
...++...+. .+.. .....+|-++ .+|+.. .+.. +....-.+++||||||+ |++ .+.+..|++.+|
T Consensus 221 ~~l~l~~~~~-~~~~------~~~~Tih~ll~~~~~~~-~~~~-~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 221 RQLPLTDEQK-KRIP------EDASTLHRLLGAQPGSQ-RLRH-HAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALP 287 (608)
T ss_dssp HHSSCCSCCC-CSCS------CCCBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCC
T ss_pred hcCCCCHHHH-hccc------hhhhhhHhhhccCCCch-HHHh-ccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCC
Confidence 4333322111 1110 0011223233 344432 1111 11122378999999999 888 688999999987
Q ss_pred cC
Q psy6409 168 VT 169 (1832)
Q Consensus 168 ~~ 169 (1832)
..
T Consensus 288 ~~ 289 (608)
T 1w36_D 288 DH 289 (608)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=122.07 Aligned_cols=134 Identities=24% Similarity=0.278 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHH--HHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKT--LAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKT--la~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
++.|..|++.++.++++++.|++||||| ++++++++..+. ...+.++++++||..+|.++.+.+...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~----------~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC----------SSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh----------hcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 667777765321 1246789999999999999988887654
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCc-eeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~-IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
..+++..... .+... + ....+ ++-.+|+.. . +.......-.+++||||||+ |++ .+.+..|+..++
T Consensus 221 ~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 221 RQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALP 287 (608)
T ss_dssp HHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCC
T ss_pred hcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCC
Confidence 4444321110 00000 0 00112 222344332 1 11111122378999999999 665 456677777664
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00012 Score=96.69 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
..+++-|.+|+..++..++ .||.||.|||||.+.+-.|.+.+ ..+.++|+++||...|.++.+.+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~------------~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV------------KQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH------------HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH------------hCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4689999999999998776 68899999999987544343322 1366899999999999999988876
Q ss_pred h
Q psy6409 828 F 828 (1832)
Q Consensus 828 ~ 828 (1832)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00026 Score=93.33 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
..+++-|.+|+..++..++ .||.+|.|||||.+..-.+...+. .+.++|+++||..-|+++...+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~------------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK------------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH------------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh------------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 3689999999999998776 688899999999875544444332 356899999999999999888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00057 Score=89.55 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
+..+++.|.+|+..++.+.-++|.||+|+|||.+..- ++.++.. ..+.++|+++||...|.++...+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4678999999999999887899999999999987443 3333321 1466899999999999999888876
Q ss_pred h
Q psy6409 828 F 828 (1832)
Q Consensus 828 ~ 828 (1832)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00086 Score=87.89 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
+..+++.|.+|+..++.+.-+++.||+|+|||.+..-.+ ..+.. ..+.++|+++||...+.++...+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 457899999999999987788999999999998754333 33322 1356799999999999999888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00091 Score=89.54 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
.+..+++.|.+|+..++.+.-++|.||.|||||.+..--+ .++.. ..+.++|+++||...|.++.+.+.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~----------~~~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSK----------IHKDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHH----------HHCCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHh----------CCCCeEEEEcCcHHHHHHHHHHHH
Confidence 3567899999999999987778999999999998754333 33321 035689999999999999999988
Q ss_pred Hh
Q psy6409 827 KF 828 (1832)
Q Consensus 827 ~~ 828 (1832)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 75
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=85.28 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
..+++.|.+|+..++.++.+++.||.|+|||.+.. .++..+. ..+.++++++||...|..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~-----------~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAE-----------SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHH-----------HTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHH-----------hcCCeEEEecCcHHHHHHhHhhh
Confidence 36899999999999999999999999999997632 2333221 14678999999999998776544
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0014 Score=87.81 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
+..+++.|.+|+..++.+.-++|.||.|||||.+..-.+...+.. .+.++|+++||...|.++...+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-----------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-----------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-----------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 457899999999999887778999999999998754333322211 256799999999999999998887
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=88.46 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
....+++.|.+|+..++.+.-++|.||.|+|||.+..- ++..+.. ..+.++|+++||...|.++.+.+.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHT----------TCSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHH----------cCCCcEEEEcCcHHHHHHHHHHHH
Confidence 34578999999999999888899999999999986443 3333321 145689999999999999988887
Q ss_pred Hh
Q psy6409 827 KF 828 (1832)
Q Consensus 827 ~~ 828 (1832)
..
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 64
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.001 Score=83.92 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred cCCCCCcHHHHHHHHHHHcC-----CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQN-----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~g-----rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
+.|..+++-|.+|+..++.. ..+++.|+.|||||.+. ..++.++.. .....+++++||...|..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~----------~~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIS----------TGETGIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCCEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHh----------cCCceEEEecCcHHHHHH
Confidence 46889999999999987542 38999999999999754 334443322 112479999999998887
Q ss_pred HHHHH
Q psy6409 821 IEEET 825 (1832)
Q Consensus 821 i~~~~ 825 (1832)
+...+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66554
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=86.54 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
...+++.|.+|+..++.+.-+++.||.|+|||.+..- ++..+.. ..+.++|+++||...|.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHT----------TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHH----------cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4578999999999999887889999999999987433 3333322 1356799999999999999888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0022 Score=80.92 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.3
Q ss_pred cCCCCCcHHHHHHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQN-----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g-----~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
+.|..+++-|.+|+..++.. ..+++.|+.|||||.+. ..++.++.. .....+++++||...|..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~----------~~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIS----------TGETGIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCCEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHh----------cCCceEEEecCcHHHHHH
Confidence 45789999999999977532 38999999999999764 334444332 112469999999988877
Q ss_pred HHHHH
Q psy6409 1496 IEEET 1500 (1832)
Q Consensus 1496 i~~~~ 1500 (1832)
+...+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65544
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=86.45 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.7
Q ss_pred EEEEccc
Q psy6409 268 TVYIGSV 274 (1832)
Q Consensus 268 ~~~~~~~ 274 (1832)
+||||.+
T Consensus 104 ~lfV~nL 110 (437)
T 3pgw_S 104 TLFVARV 110 (437)
T ss_pred EEEEeCC
Confidence 3334433
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.025 Score=74.58 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+++-|.+|+. ..+..++|.|+.|||||.+.+--+...+... .....++|++++|+.+|.++.+.+..+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--------~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--------NCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC--------CCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 578999999997 2356799999999999997655444433210 112357999999999999999999876
Q ss_pred c
Q psy6409 829 G 829 (1832)
Q Consensus 829 ~ 829 (1832)
.
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0019 Score=83.30 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+++.|.+++..++.+..+++.+|.|+|||.+. ..++..+.. .+..+++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-----------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-----------cCCeEEEecCcHHHHHHhHhhh
Confidence 689999999999999999999999999999763 233333322 3677999999999988766543
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.057 Score=71.10 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..+++-|.+|+. .....++|.|+.|||||.+.+--+...+... ......+|++++|+..+.++...+.++
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--------~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--------NCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC--------CCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 478999999996 3356899999999999998665555444321 112357999999999999999999876
Q ss_pred c
Q psy6409 1504 G 1504 (1832)
Q Consensus 1504 ~ 1504 (1832)
.
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.032 Score=67.91 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=76.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|+|+|...+..+...+-+++..+-+.|||.++...++..+.. ..+..+++++|++.-|..+...+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999998876556779999999999999877666543321 246789999999999988887777654
Q ss_pred CCCC--Ce--EEEEEcCCchHHHHHHHhcCCceeec--CHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 830 TPLG--IR--TVLVVGGLSREEQGFRLRLGCEIVIA--TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 830 ~~~~--i~--v~~~~Gg~~~~~~~~~l~~~~~IlV~--TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
..++ ++ +... +... ..+..|..|.+. +|+.+ .-.++.++|+||+|.+-
T Consensus 233 ~~~P~ll~~~~~~~-~~~~-----I~f~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccC-CccE-----EEeCCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcC
Confidence 3222 11 1111 1100 112234444333 35444 23456899999999654
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.084 Score=64.16 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++-|..+...+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999999876666543322 246689999999999988777777654
Q ss_pred CCCC--C--eEEEEECCcchHHHHHHhhcCCcEEEe--CHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1505 TPLG--I--RTVLVVGGLSREEQGFRLRLGCEIVIA--TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1505 ~~~g--~--~v~~l~gg~~~~~~~~~l~~~~~IiVa--TP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
.... + .+... ... ...+.+|..|.+. +|+.+ .-.+++++|+||+|.+-
T Consensus 233 ~~~P~ll~~~~~~~-~~~-----~I~f~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEW-NKG-----SIELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEE-CSS-----EEEETTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccC-Ccc-----EEEeCCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcC
Confidence 3221 1 11111 110 1112335555443 34433 12346899999999664
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.054 Score=70.36 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|+|+|...+..+-..+.+++.++-|+|||.+....++..+.. ..+..+++++|++..|..+...++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 6899999988877556789999999999999876555543321 235689999999999999988888776
Q ss_pred CCCC--CeEEEE-EcCCchHHHHHHHhcCCceee--cCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 830 TPLG--IRTVLV-VGGLSREEQGFRLRLGCEIVI--ATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 830 ~~~~--i~v~~~-~Gg~~~~~~~~~l~~~~~IlV--~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
..++ +..... .+... ..+..|..|.+ +.|+.+ .-.+.+++|+||+|.+-
T Consensus 233 ~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l---------rG~~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIP 286 (592)
T ss_dssp TTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH---------HHSCCSEEEEETGGGCT
T ss_pred HhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc---------cCCCcceEEEehhccCC
Confidence 5543 111111 11111 11223444443 335544 11246889999999654
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.13 Score=66.75 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|...+..+...+-+++..+-|+|||.+....++..+.. ..+..+++++|+.+.|..+...++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 6899999998877556779999999999999876555544322 135689999999999999888888765
Q ss_pred CCCC--CeEEEE-ECCcchHHHHHHhhcCCcEEEe--CHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1505 TPLG--IRTVLV-VGGLSREEQGFRLRLGCEIVIA--TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1505 ~~~g--~~v~~l-~gg~~~~~~~~~l~~~~~IiVa--TP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
..++ +..... .... ...+.+|..|.+. .|+.+.. .+.+++|+||+|.+-
T Consensus 233 ~~~p~~~~~~~~~~~~~-----~i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKG-----SIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIP 286 (592)
T ss_dssp TTSCTTTSCCEEEECSS-----EEEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCT
T ss_pred HhChHhhccccccCCcc-----EEEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCC
Confidence 5443 111001 0111 1112335544443 3554422 246899999999653
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.065 Score=70.85 Aligned_cols=110 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.+|+-|.+|+.. .+..++|.|+.|||||.+.+--+...+... ......+|+|+.|+..|.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~--------~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--------GYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--------CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999875 367799999999999997555444433220 1134579999999999999999998874
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccccc-C-CceeEEEecchh
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL-N-QCTYIVLDEADR 890 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l-~-~~~~lViDEaH~ 890 (1832)
...+ ...+-|+|-..|...+.+..... . .-.+-|+|+.+.
T Consensus 72 ~~~~---------------------~~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~ 113 (673)
T 1uaa_A 72 GRKE---------------------ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQ 113 (673)
T ss_dssp CTTT---------------------TTTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHH
T ss_pred Cccc---------------------ccCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 3211 12467888888765554432111 1 124567787763
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.071 Score=65.57 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=53.9
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
-.++.|+.|||||....- +.. ....+|++||++++..+.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~~-----~~~------------~~~~lVlTpT~~aa~~l~~kl~~~~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-----RVN------------FEEDLILVPGRQAAEMIRRRANASGII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-----HCC------------TTTCEEEESCHHHHHHHHHHHTTTSCC---------------
T ss_pred EEEEEcCCCCCHHHHHHH-----Hhc------------cCCeEEEeCCHHHHHHHHHHhhhcCcc---------------
Confidence 378999999999985321 111 124699999999999888777543110
Q ss_pred HHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC
Q psy6409 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894 (1832)
Q Consensus 847 ~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~ 894 (1832)
.....-|.|-+.++ +.......-.+++||||||- |++.
T Consensus 211 -------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 211 -------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp -------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGG-GSCH
T ss_pred -------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcc-cCCH
Confidence 01234477776653 22222122348999999998 5543
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.11 Score=69.31 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+++-|.+|+.. .+..++|.|+.|||||.+..--+...+... ......+|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--------~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--------HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 356799999999999997555454433210 113357999999999999999988876
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC--CceeEEEecchh
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEADR 890 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH~ 890 (1832)
... . ...+-|+|-..|...+.+...... .-.+-|+|+.+.
T Consensus 80 l~~------------~----------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 80 LGG------------A----------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp HGG------------G----------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred hcc------------c----------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 321 0 123668898877655544322111 124678888774
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.4 Score=51.55 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHH---------cCCcEEEEecCCChHHHHHH
Q psy6409 752 TPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 752 t~iQ~~ai~~il---------~grdvIv~apTGSGKTla~l 783 (1832)
++.|.+++..+. .|+.++++||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665553 36789999999999998644
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.075 Score=57.91 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
|+-.+++||.|+|||..++--+..+. ..+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~------------~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK------------LGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH------------HTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH------------HCCCeEEEEeecc
Confidence 55578999999999997654443321 1356788888874
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.22 Score=58.49 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEeccccc
Q psy6409 984 EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061 (1832)
Q Consensus 984 ~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~ 1061 (1832)
...|+..|..+|.. ..+.+++||++..+.-+.+..+|...+++..-+.|.....++. -.++...|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 45566666666543 3567999999999999999999999999999999986553322 1245556666577666
Q ss_pred ccCC-----CcCcCEEEEcCCCCCHhH-HHHHhcccccCC----CCcEEEEEecCCC
Q psy6409 1062 RGID-----IKDVSMVINYDMAKSIED-YTHRIGRTGRAG----KEGLAVSFCTKDD 1108 (1832)
Q Consensus 1062 rGlD-----ip~v~~VI~~d~p~s~~~-yvQr~GRaGR~g----~~G~ai~~~~~~d 1108 (1832)
-|+| .-..+.||.||.-.++.. .+|.+-|+.|.| +.-.++.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6776 568899999999887765 488777777763 3457888888874
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.22 Score=64.24 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQ--NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~--grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
.+|.-|.+|+..++. ..-.++.|+-|.|||.+..+.+-.. ...++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~---------------~~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI---------------AGRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS---------------SSCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH---------------HhCcEEECCCHHHHHHHHHHhhC
Confidence 789999999998886 3347999999999997666544321 01369999999876644332211
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
.|-+..|..+.. .+.++++||||||=.+. .+.+..++..
T Consensus 240 -----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 240 -----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp -----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred -----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 144567765421 34568999999998543 3455555543
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.27 Score=57.71 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEccccc
Q psy6409 1659 EQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736 (1832)
Q Consensus 1659 ~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~ 1736 (1832)
...|...|-.++... .+.+++||++..+.-+.+-.+|...++...-+.|.....++. -.++.+.|.+.|+...
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 456766666666542 567999999999999999999999999999999885443221 1245666666677666
Q ss_pred ccCC-----CCCCCEEEEeCCCCCHHH-HHHHhcccccC--C--CccEEEEEeeCCChhH
Q psy6409 1737 RGID-----IKDVSMVINYDMAKSIED-YTHRIGRTGRA--G--KEGLAVSFCTKDDSHL 1786 (1832)
Q Consensus 1737 ~GID-----ip~v~~VI~~d~P~s~~~-yiQRiGRaGR~--g--~~G~ai~~~~~~d~~~ 1786 (1832)
-|+| ....+.||.||.-+++.+ .+|.+-|+.|. | +.-.++-|++....+.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6786 568899999999888776 58888787775 2 3456777888775443
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.69 Score=54.68 Aligned_cols=21 Identities=19% Similarity=-0.105 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~l 1459 (1832)
.+.++++.+|+|+|||.+.-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999987533
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.25 Score=53.19 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHH
Q psy6409 1427 TPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1427 tpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~ 1458 (1832)
++.|.+++..+. .|+.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665543 46889999999999998653
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=92.77 E-value=0.15 Score=67.51 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.++|-|.+++.. .+..++|.|+.|||||.+..--+...+... ......+|+|+.|+..|.++...+.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~--------~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--------GYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--------CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 578999999864 367899999999999998665555444321 1134569999999999999999998764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.14 Score=57.49 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=51.3
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
|.-+++.|++|+|||++.+-.+..+. ..+.+++++.|...=- -...++..+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~------------~~g~kVli~~~~~d~r-----~~~~i~srlG~~~-------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE------------YADVKYLVFKPKIDTR-----SIRNIQSRTGTSL-------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEEECCCGG-----GCSSCCCCCCCSS--------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH------------hcCCEEEEEEeccCch-----HHHHHHHhcCCCc--------
Confidence 44578899999999987655444322 2466788888765310 0012222233211
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
..+.+.+...+.+.+.... .-..+++||||||+.+
T Consensus 67 -----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1123455555656554422 2345899999999954
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.12 Score=56.69 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=27.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
|+=.+++||.|||||.+.+--+.++. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~------------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK------------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEecc
Confidence 44478899999999987655444322 2477899999874
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.13 Score=63.35 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=51.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
.++.|+.|||||....--+ . ....+|++||++++..+.+.+.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~-----~------------~~~~lVlTpT~~aa~~l~~kl~~~~~~---------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV-----N------------FEEDLILVPGRQAAEMIRRRANASGII---------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC-----C------------TTTCEEEESCHHHHHHHHHHHTTTSCC----------------
T ss_pred EEEEcCCCCCHHHHHHHHh-----c------------cCCeEEEeCCHHHHHHHHHHhhhcCcc----------------
Confidence 6789999999998642111 0 124699999999998887776443110
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
.....-|.|-+.++ +.......-.+++||||||- |++
T Consensus 211 ------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~s-m~~ 247 (446)
T 3vkw_A 211 ------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGL-MLH 247 (446)
T ss_dssp ------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGG-GSC
T ss_pred ------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcc-cCC
Confidence 01123366766543 22222222348999999998 444
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.76 Score=54.34 Aligned_cols=20 Identities=15% Similarity=-0.155 Sum_probs=16.6
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
+.++++.||+|+|||++.-.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999986443
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.74 E-value=0.17 Score=55.39 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
|+=.++.+|.|||||.+.+-.+.++. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~------------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK------------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEecc
Confidence 33467889999999987655444332 2467899999874
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.2 Score=54.56 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
|.=.++.+|.|+|||..++--+..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~------------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL------------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH------------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEeecc
Confidence 455788999999999876443433221 356788888874
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.11 Score=54.37 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=16.1
Q ss_pred CCCcEEEEecCCCcchhH
Q psy6409 23 QNRDIIGVAETGSGKTLA 40 (1832)
Q Consensus 23 ~g~d~~~~a~TGsGKTla 40 (1832)
.|.-+++.+|+|+|||-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 788999999999999854
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.24 Score=55.62 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
|.=+++.+|+|+|||.+.+-.+..+. ..+.+++++.|...= . -...+...+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~------------~~g~kVli~~~~~d~--r---~~~~i~srlG~~~-------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE------------YADVKYLVFKPKIDT--R---SIRNIQSRTGTSL-------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEEECCCG--G---GCSSCCCCCCCSS--------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH------------hcCCEEEEEEeccCc--h---HHHHHHHhcCCCc--------
Confidence 44578889999999987655444332 136678888775420 0 0001122222110
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l 1566 (1832)
..+-+.+...+...+.... .-..+++||||||+.+
T Consensus 67 -----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233456666666655422 2345899999999964
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.33 Score=62.65 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
.+|.-|.+++..++.- .-.++.|+-|.|||.+..+.+-.. ...++|.+|+.+=+..+.....+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~---------------~~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI---------------AGRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS---------------SSCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH---------------HhCcEEECCCHHHHHHHHHHhhC
Confidence 6899999999988862 347899999999997766555321 01269999988755533222111
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
.|-+..|..+. . ...++++||||||=.+- .+.+..++...
T Consensus 240 -----------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp----~pll~~ll~~~ 279 (671)
T 2zpa_A 240 -----------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIP----APLLHQLVSRF 279 (671)
T ss_dssp -----------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSC----HHHHHHHHTTS
T ss_pred -----------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCC----HHHHHHHHhhC
Confidence 13334565432 1 24568999999998552 56677776644
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=90.39 E-value=0.77 Score=53.96 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+.+++++||+|+|||.++-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999998654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=90.36 E-value=1 Score=55.52 Aligned_cols=21 Identities=33% Similarity=0.085 Sum_probs=16.1
Q ss_pred CcEEEEecCCChHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpi 786 (1832)
+-++++|++|+|||+....-+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458888999999998654433
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.32 Score=68.66 Aligned_cols=126 Identities=18% Similarity=0.088 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+|+-|.++|..- +++++|.|.-|||||.+.+-=++..+.... ......++|+|++|+..|.++...+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 36799999998754 789999999999999986665555443210 0113457999999999999999988774
Q ss_pred cCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC--CceeEEEecch
Q psy6409 829 GTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEAD 889 (1832)
Q Consensus 829 ~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH 889 (1832)
.... +- +... ..-...+..-..+-|+|-..+...+.+.....- .-.+-|+||..
T Consensus 81 l~~~~~~------~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 81 LEKELVQ------RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp HHHHHHH------STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred HHHHhhc------Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 2210 00 0000 011111222356788998888755554432111 11344778765
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.32 Score=56.58 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=31.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQ-RQAIPIG--LQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ-~~ai~~i--l~grdvIv~apTGSGKTla~ 782 (1832)
|-..|+++.-.+..++.|.+.=. .+.+ .+.+... ..++.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887666666666654210 0000 1111111 23567999999999999854
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.18 Score=62.14 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
..|-.+|++.+-.+...+.|.+. -+..|--++...++ -.+.+++.||.|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 35667899998777777666532 11222222211110 1367999999999999853
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=2.1 Score=49.26 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.5
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..++++||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998654
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=89.81 E-value=0.45 Score=63.27 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..++|-|.+|+.. .+..++|.|+.|||||.+..--+...+... ......+|+|+.|+..|.++.+.+.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--------~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--------HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999864 356899999999999998665555544321 113456999999999999998888765
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=89.56 E-value=2 Score=45.81 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999998643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=89.54 E-value=0.31 Score=51.02 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.5
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|..++++||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999853
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=0.96 Score=53.66 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..++++||+|+|||..+-
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.77 Score=54.53 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+..+++.+|+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999998653
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.5 Score=52.33 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=26.3
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
.+++|+-|||||++++--+.++. ..+.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQ------------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEeccC
Confidence 56788889999987666555432 24778999999763
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.14 E-value=1.7 Score=52.56 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+..+++.+|+|+|||..+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999998653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=2.7 Score=48.33 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
.++++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.02 E-value=1.5 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999998643
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=87.98 E-value=1.4 Score=52.60 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHH----cCC---cEEEEecCCChHHHHHHH
Q psy6409 752 TPIQRQAIPIGL----QNR---DIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 752 t~iQ~~ai~~il----~gr---dvIv~apTGSGKTla~ll 784 (1832)
.|+|.+++..+. .|+ -+++.||.|+|||..+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 466666655443 343 389999999999987554
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=87.75 E-value=0.33 Score=54.50 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=16.3
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.++++||+|+|||..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5779999999999998543
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.70 E-value=0.44 Score=57.95 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=30.3
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+=-+...+.|.+. -+..|--++.-.+ .-.+.+++.||.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 446899986555555555432 1111111111100 11367999999999999853
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=87.60 E-value=1.5 Score=52.13 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=31.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCcEEEEecCCChHHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-----QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-----~grdvIv~apTGSGKTla~l 783 (1832)
|-..|+++.-...+++.|...=. .| ...|... ..+.++++||+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34578888766677776654210 00 0011111 13569999999999998643
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=87.52 E-value=5 Score=43.70 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=29.9
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
..+++..++|.|||.+++--++..+ ..|.+++|+.-.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~------------g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV------------GHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH------------HTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH------------HCCCeEEEEEeeC
Confidence 3699999999999999887777654 3478899986544
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.51 E-value=0.54 Score=57.94 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.|-.+|++.+-.+...+.|.+. .+.+|--++...+ --.+.+|+.+|+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 4667899998777777776542 2223322222111 12378999999999999864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.59 Score=56.79 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=32.7
Q ss_pred CcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
|--+|++.+--+...+.|++. .+.+|--++.-. +--.+.+|+.+|.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 446899987666666666542 122222221111 112378999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.14 E-value=1.2 Score=50.70 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
.+.++++||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999998643
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=86.87 E-value=0.68 Score=65.28 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+|+-|.++|..- +.+++|.|.-|||||.+.+--++..+.... .......+|+|++|++.|.++...+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6899999998654 789999999999999987666665553310 0123457999999999999998888764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.78 E-value=2.5 Score=50.08 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=30.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-----CCcEEEEecCCChHHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-----NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-----grdvIv~apTGSGKTla~l 783 (1832)
|-.+|++++-.+.+++.|.+.=. .|. -.|.++. .+.++++||+|+|||..+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34579888766666666653100 000 0011111 2679999999999998643
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.40 E-value=0.36 Score=59.54 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=30.0
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 725 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
.|--+|++.+--+...+.|.+. -+..|--++.-. +--.+-+|+.||.|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3446799887555555555431 111111111100 001367999999999999854
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=86.09 E-value=3.1 Score=51.28 Aligned_cols=57 Identities=19% Similarity=0.108 Sum_probs=32.4
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc--cchhHHHHHHHHHHHhcCCCCCeEE
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA--PTRELAQQIEEETNKFGTPLGIRTV 837 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila--PtreLa~Qi~~~~~~~~~~~~i~v~ 837 (1832)
.-++++|++|+|||+...--+. ++. ..|.++++++ |.|.-|.++.. .++...++.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~-----------~~G~kVllv~~D~~R~aa~eqL~---~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQ-----------KRGYKVGVVCSDTWRPGAYHQLR---QLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHH-----------TTTCCEEEEECCCSSTHHHHHHH---HHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHH-----------HCCCeEEEEeCCCcchhHHHHHH---HHHHhcCCcEE
Confidence 3488999999999987554332 221 2355566555 55665544333 33333455443
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=0.78 Score=50.76 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=26.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.++.+|-|||||.+++--+.++. ..+.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQ------------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEeccC
Confidence 45788999999988665555443 24778999999753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.74 E-value=0.8 Score=56.34 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=29.3
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+--..+.+.|.+. -+..|--++..- +--.+-+++.||.|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 446898886555555555431 111111111100 011356999999999999853
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.49 E-value=0.56 Score=57.83 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=31.4
Q ss_pred cccCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHH--HcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIG---YAEPTPIQRQAIPIG--LQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g---~~~pt~iQ~~ai~~i--l~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+--+.+.+.|.+.= +..| +.+..+ --.+.+|+.||.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4468999876666666665421 1111 111111 11367999999999999853
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=85.04 E-value=6 Score=41.89 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
..++++++|+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999865
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=1.6 Score=51.26 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+.++++.+|+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998753
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=84.80 E-value=2.1 Score=50.38 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.4
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++++++.||||+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998644
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.80 E-value=0.56 Score=51.84 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
|.=.+++||-|||||...+--+..+. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~------------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI------------YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH------------HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH------------HcCCceEEEEeccC
Confidence 34478899999999986544443221 23677999999653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.74 E-value=5 Score=43.72 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.7
Q ss_pred CcEEEEecCCChHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~ 782 (1832)
..++++||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999854
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.69 E-value=2.3 Score=51.43 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=15.3
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 569999999999998643
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.64 E-value=4.5 Score=48.80 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.5
Q ss_pred cEEEEecCCChHHHHH
Q psy6409 767 DIIGVAETGSGKTLAF 782 (1832)
Q Consensus 767 dvIv~apTGSGKTla~ 782 (1832)
.++++||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=84.50 E-value=2.2 Score=47.68 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=29.0
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
|+=.+++|+-|||||.+.+--+.++. ..|.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~------------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ------------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH------------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCeEEEEeecCC
Confidence 44467788889999987666555432 35778999988753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=84.37 E-value=0.67 Score=51.89 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~ 1457 (1832)
.+..+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999865
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.11 E-value=0.55 Score=57.35 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=30.5
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 725 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
.|-.+|++.+=-+...+.|.+. -+..|--++...+ --.+-+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3456899886444555444431 1122222221111 01366999999999999853
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.88 E-value=2.4 Score=51.02 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998543
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.87 E-value=5.2 Score=49.12 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=31.2
Q ss_pred CcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
|-.+|++.+--+.+.+.|.+. .+.+|--++.-- +--.+.+|+.+|+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 446799886555666555431 111121111110 112378999999999999865
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.63 E-value=1.9 Score=52.67 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.|-.+|++.+--+...+.|.+. .+.+|--++..-+ --.+.+|+.+|.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3556899986555555555431 2223322221111 12378999999999999865
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=83.54 E-value=3 Score=51.35 Aligned_cols=19 Identities=37% Similarity=0.155 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~l 1459 (1832)
.-+++++|+|+|||.....
T Consensus 98 ~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp EEEEECCCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578889999999986544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.37 E-value=0.92 Score=52.99 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5679999999999998643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=83.21 E-value=5.7 Score=43.28 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
.++++.+|+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=83.07 E-value=3.1 Score=51.58 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
...+++.+|+|+|||..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998653
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=82.90 E-value=3.2 Score=48.90 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+.++++.+|+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998654
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=82.77 E-value=0.84 Score=50.47 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
|.=.++.+|-|||||...+--+.++. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~------------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI------------YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH------------HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH------------HcCCceEEEEeccC
Confidence 33367889999999976544443322 13667999999653
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=82.55 E-value=1.2 Score=48.38 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=26.4
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|+=.+++||.|||||.-.+-.+-++. ..+.+++|+-|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~------------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ------------IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH------------HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH------------HcCCeEEEEccc
Confidence 45588999999999965444443332 135778998886
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=82.12 E-value=1.7 Score=55.23 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.6
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998654
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=81.88 E-value=2.5 Score=50.28 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.4
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
.++++.||+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999998643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=81.78 E-value=3.4 Score=49.69 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+..+++.+|+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998653
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.67 E-value=2.1 Score=52.72 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=32.9
Q ss_pred CcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
|--+|++.+--+.+.+.|++. .+.+|--++.-- +--.+.+|+.+|.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 446799987666777777642 111221111100 112478999999999999865
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=81.54 E-value=2.5 Score=51.16 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
+..+++.+|+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999865
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.20 E-value=6.2 Score=47.55 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~ 1457 (1832)
.+++.+|+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999865
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=81.05 E-value=0.17 Score=60.67 Aligned_cols=118 Identities=9% Similarity=-0.023 Sum_probs=61.8
Q ss_pred ccccccCcccccccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHHhcchh----------
Q psy6409 1203 DYDRRFKRKKSPQCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKERYLGLV---------- 1270 (1832)
Q Consensus 1203 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~~~~~~---------- 1270 (1832)
-..+.+|+.+|.||+.+.+ ..++..+.+.++...+|..++.+.||+.+.+|.+| .++..|..+.....
T Consensus 13 l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~ 92 (339)
T 2q0z_X 13 VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 92 (339)
T ss_dssp ------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHH
T ss_pred eccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCHHH
Confidence 3456689999999999998 45555666778889999999999999999999776 77777765532111
Q ss_pred ----------------------------hhhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccc
Q psy6409 1271 ----------------------------KKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGID 1320 (1832)
Q Consensus 1271 ----------------------------~~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~ 1320 (1832)
...|.++++.+....++|...+.....++.++....|......-.+++++
T Consensus 93 K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~ 170 (339)
T 2q0z_X 93 KTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCCCC
Confidence 01233344445555667877777778888888888887655555566664
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.73 E-value=1.3 Score=54.12 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
.+.+++.||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998643
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=80.68 E-value=2.1 Score=54.31 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
+.+++.+|+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 679999999999998753
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.56 E-value=2 Score=52.95 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.|-.+|++.+--+...+.|.+. .+.+|--++.-. +--.+.+|+.+|+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3456799986555666555431 111221111110 012378999999999999875
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=80.05 E-value=4.9 Score=49.83 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.4
Q ss_pred CCcEEEEecCCCcchhHh
Q psy6409 24 NRDIIGVAETGSGKTLAF 41 (1832)
Q Consensus 24 g~d~~~~a~TGsGKTlaf 41 (1832)
+..+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1832 | ||||
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 6e-49 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 6e-49 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 3e-34 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 3e-47 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 3e-47 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 9e-37 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 3e-06 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-45 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-45 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-31 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-43 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-43 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 7e-31 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 6e-43 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 6e-43 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-30 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-07 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 4e-40 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 4e-40 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 6e-29 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 4e-08 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-38 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-38 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-16 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 8e-07 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-37 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 2e-37 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 6e-26 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 7e-08 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 8e-36 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 8e-36 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-24 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 3e-33 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 3e-33 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 2e-11 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 4e-32 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 4e-32 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 1e-20 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 6e-32 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 6e-32 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-28 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-26 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-26 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 2e-23 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 7e-25 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 7e-25 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 1e-21 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-23 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 4e-23 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-06 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 4e-22 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 4e-22 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 6e-21 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 6e-21 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 7e-21 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 7e-21 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 1e-06 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 8e-20 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 8e-20 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 1e-11 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-19 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-19 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 1e-17 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 1e-17 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 2e-17 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 1e-16 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 4e-05 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 1e-15 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 1e-15 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 1e-15 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 1e-15 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 5e-13 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-12 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 0.003 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-12 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-12 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 3e-12 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 4e-12 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 4e-12 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 3e-11 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 3e-11 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 3e-11 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 3e-11 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 1e-05 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.002 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.003 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 0.004 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 0.003 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 0.003 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.004 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.004 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.004 |
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 172 bits (437), Expect = 6e-49
Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 23/257 (8%)
Query: 712 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 3 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 62
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 63 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 122
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 123 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 182
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949
RM+DMGFEP ++KI+E RQT+MF+AT P +
Sbjct: 183 RMLDMGFEPQIRKIIEES---------------------NMPSGINRQTLMFSATFPKEI 221
Query: 950 ERLARSYLRRPATVYIG 966
++LA +L + +G
Sbjct: 222 QKLAADFLYNYIFMTVG 238
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 172 bits (437), Expect = 6e-49
Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 23/257 (8%)
Query: 1387 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 3 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 62
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 63 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 122
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 123 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 182
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624
RM+DMGFEP ++KI+E RQT+MF+AT P +
Sbjct: 183 RMLDMGFEPQIRKIIEES---------------------NMPSGINRQTLMFSATFPKEI 221
Query: 1625 ERLARSYLRRPATVYIG 1641
++LA +L + +G
Sbjct: 222 QKLAADFLYNYIFMTVG 238
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 130 bits (326), Expect = 3e-34
Identities = 87/271 (32%), Positives = 124/271 (45%), Gaps = 68/271 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I Y PTPIQ+ AIP L++RDI+ A+TGSGKT AFL+P++ + +
Sbjct: 36 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 95
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I+APTRELA QI E+ KF +R+ +V GG Q +++GC +++AT
Sbjct: 96 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVAT 155
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D +E + L C YIVLDEADRM+DMGFEP ++KI+E
Sbjct: 156 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES--------------- 200
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQT+M
Sbjct: 201 ------NMPSGINRQTLM------------------------------------------ 212
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272
F+AT P +++LA +L + +G
Sbjct: 213 -----FSATFPKEIQKLAADFLYNYIFMTVG 238
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 166 bits (421), Expect = 3e-47
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLL 787
N+ E +L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +P
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP-- 62
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
+ + + + G AII+ PTRELA Q+ +E ++ + GG +
Sbjct: 63 --------LIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 114
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
Q L+ IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 115 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 173
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
K ++ ++F+ATMP + LA+ Y+ + +
Sbjct: 174 N-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFI 204
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 166 bits (421), Expect = 3e-47
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLL 1462
N+ E +L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +P
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP-- 62
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
+ + + + G AII+ PTRELA Q+ +E ++ + GG +
Sbjct: 63 --------LIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 114
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
Q L+ IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 115 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 173
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
K ++ ++F+ATMP + LA+ Y+ + +
Sbjct: 174 N-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFI 204
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 136 bits (343), Expect = 9e-37
Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 37/206 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +P + + +
Sbjct: 19 IRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP----------LIELVN 68
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ G AII+ PTRELA Q+ +E ++ + GG + Q L+ IV+
Sbjct: 69 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVG 127
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 128 TPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------- 174
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
K ++ ++F+ATMP
Sbjct: 175 ------------KDKRILLFSATMPR 188
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 47.7 bits (113), Expect = 3e-06
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATV 269
K ++ ++F+ATMP + LA+ Y+ + +
Sbjct: 174 NKDKRILLFSATMPREILNLAKKYMGDYSFI 204
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 160 bits (406), Expect = 4e-45
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 35/245 (14%)
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+ +L I+ + A+++APTRELAQQI++ G +G +GG
Sbjct: 67 AISILQQIELDL---------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 117
Query: 843 LSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 901
+ + +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ +
Sbjct: 118 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 177
Query: 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961
I + + Q V+ +ATMP V + + ++R P
Sbjct: 178 DIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPI 212
Query: 962 TVYIG 966
+ +
Sbjct: 213 RILVK 217
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 160 bits (406), Expect = 4e-45
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 35/245 (14%)
Query: 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517
+ +L I+ + A+++APTRELAQQI++ G +G +GG
Sbjct: 67 AISILQQIELDL---------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 117
Query: 1518 LSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 1576
+ + +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ +
Sbjct: 118 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 177
Query: 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 1636
I + + Q V+ +ATMP V + + ++R P
Sbjct: 178 DIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPI 212
Query: 1637 TVYIG 1641
+ +
Sbjct: 213 RILVK 217
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (302), Expect = 4e-31
Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 82/272 (30%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L I+
Sbjct: 27 IYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-------- 78
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIA 120
+ A+++APTRELAQQI++ G +G +GG + + +L++ I++
Sbjct: 79 -KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 137
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR+ D+L RYL VLDEAD M+ GF+ + I + +
Sbjct: 138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------- 184
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
Q V+
Sbjct: 185 ------------SNTQVVLL---------------------------------------- 192
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIG 272
+ATMP V + + ++R P + +
Sbjct: 193 -------SATMPSDVLEVTKKFMRDPIRILVK 217
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 155 bits (393), Expect = 2e-43
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + + D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G
Sbjct: 5 VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSG 64
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
+GKT F S+ + ++ + A+I+APTRELA QI++ G + ++
Sbjct: 65 TGKTATF---------SISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 115
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
+GG + E +L G +V TPGR+ D++ R L +VLDEAD M++ G
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
Query: 896 FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 955
F+ + + Y+P Q V+ +AT+P + +
Sbjct: 176 FKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNK 210
Query: 956 YLRRPATVYIG 966
++ P + +
Sbjct: 211 FMTDPIRILVK 221
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 155 bits (393), Expect = 2e-43
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + + D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G
Sbjct: 5 VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSG 64
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
+GKT F S+ + ++ + A+I+APTRELA QI++ G + ++
Sbjct: 65 TGKTATF---------SISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 115
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
+GG + E +L G +V TPGR+ D++ R L +VLDEAD M++ G
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
Query: 1571 FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 1630
F+ + + Y+P Q V+ +AT+P + +
Sbjct: 176 FKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNK 210
Query: 1631 YLRRPATVYIG 1641
++ P + +
Sbjct: 211 FMTDPIRILVK 221
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (300), Expect = 7e-31
Identities = 58/271 (21%), Positives = 105/271 (38%), Gaps = 81/271 (29%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ RD+I +++G+GKT F S+ + ++
Sbjct: 32 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF---------SISVLQCLDIQ 82
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+I+APTRELA QI++ G + ++ +GG + E +L G +V T
Sbjct: 83 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 142
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D++ R L +VLDEAD M++ GF+ + + Y+P
Sbjct: 143 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-------------- 188
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+
Sbjct: 189 -----------PATQVVLI----------------------------------------- 196
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272
+AT+P + + ++ P + +
Sbjct: 197 ------SATLPHEILEMTNKFMTDPIRILVK 221
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 154 bits (389), Expect = 6e-43
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 5 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 64
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+ L I + K P A+++APTRELA QI++ + I+ +GG
Sbjct: 65 SIAALQRIDTSVK---------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
S E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +
Sbjct: 116 TSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 174
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
I +P Q V+ +ATMP V + ++R P
Sbjct: 175 IFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVR 209
Query: 963 VYI 965
+ +
Sbjct: 210 ILV 212
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 154 bits (389), Expect = 6e-43
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 5 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 64
Query: 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517
+ L I + K P A+++APTRELA QI++ + I+ +GG
Sbjct: 65 SIAALQRIDTSVK---------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
S E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +
Sbjct: 116 TSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 174
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
I +P Q V+ +ATMP V + ++R P
Sbjct: 175 IFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVR 209
Query: 1638 VYI 1640
+ +
Sbjct: 210 ILV 212
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 117 bits (294), Expect = 3e-30
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ EP+ IQ++AI ++ D++ A++G+GKT F + L I + K
Sbjct: 25 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK------- 77
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P A+++APTRELA QI++ + I+ +GG S E LR +IV+ T
Sbjct: 78 --APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGT 134
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D ++ R ++ +LDEAD M+ GF+ + +I +P
Sbjct: 135 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------- 180
Query: 182 NKLLANYNSKKKYRQTVMFTATMPP 206
Q V+ +ATMP
Sbjct: 181 -----------PTTQVVLLSATMPN 194
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (124), Expect = 1e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
Q V+ +ATMP V + ++R P + +
Sbjct: 180 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 146 bits (368), Expect = 4e-40
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 37/239 (15%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQ 848
+E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 63 ---------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 113
Query: 849 GFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 906
L + IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 114 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 174 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 146 bits (368), Expect = 4e-40
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 37/239 (15%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQ 1523
+E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 63 ---------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 113
Query: 1524 GFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 1581
L + IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 114 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 174 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 6e-29
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 37/208 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L +E
Sbjct: 16 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ---------LEPV 66
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRL-RLGCEIVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L + IV+
Sbjct: 67 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 126
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 127 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 175
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPP 206
+Q +MF+AT+
Sbjct: 176 --------------HEKQVMMFSATLSK 189
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 4e-08
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
+Q +MF+AT+ + + R +++ P +++
Sbjct: 175 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 144 bits (363), Expect = 2e-38
Identities = 57/365 (15%), Positives = 93/365 (25%), Gaps = 89/365 (24%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ R I G+GKT +L ++ E +G +I+APTR +A ++EE
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIV-----------REAIKRGLRTLILAPTRVVAAEMEE 56
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
+ G EIV + + + I
Sbjct: 57 ALRGLPIRYQTPAI------------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLI 104
Query: 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 943
++DEA + TA
Sbjct: 105 IMDEAHFTDPASIAARGYISTRVEM-------------------------GEAAGIFMTA 139
Query: 944 TMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003
T P + + +S I + E+ V +
Sbjct: 140 TPPGSRDPFPQSNAP----------------IMDEEREIPERSWNSGHEWVTDFK--GKT 181
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1063
+ FV K + +A L K G L + + D +V TD++ G
Sbjct: 182 VWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMG 237
Query: 1064 IDIK---------DVSMVINYD----------MAKSIEDYTHRIGRTGRAGKEGLAVSFC 1104
+ K + VI D M + R GR GR K
Sbjct: 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297
Query: 1105 TKDDS 1109
+
Sbjct: 298 MGEPL 302
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 144 bits (363), Expect = 2e-38
Identities = 57/365 (15%), Positives = 93/365 (25%), Gaps = 89/365 (24%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ R I G+GKT +L ++ E +G +I+APTR +A ++EE
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIV-----------REAIKRGLRTLILAPTRVVAAEMEE 56
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
+ G EIV + + + I
Sbjct: 57 ALRGLPIRYQTPAI------------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLI 104
Query: 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 1618
++DEA + TA
Sbjct: 105 IMDEAHFTDPASIAARGYISTRVEM-------------------------GEAAGIFMTA 139
Query: 1619 TMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1678
T P + + +S I + E+ V +
Sbjct: 140 TPPGSRDPFPQSNAP----------------IMDEEREIPERSWNSGHEWVTDFK--GKT 181
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738
+ FV K + +A L K G L + + D +V TD++ G
Sbjct: 182 VWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMG 237
Query: 1739 IDIK---------DVSMVINYD----------MAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779
+ K + VI D M + R GR GR K
Sbjct: 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297
Query: 1780 TKDDS 1784
+
Sbjct: 298 MGEPL 302
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 80.4 bits (197), Expect = 1e-16
Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 48/226 (21%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82
+ R I G+GKT +L ++ E +G +I+APTR +A ++EE
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIV-----------REAIKRGLRTLILAPTRVVAAEMEE 56
Query: 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 142
+ G EIV + + + I
Sbjct: 57 ALRGLPIRYQTPAI------------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLI 104
Query: 143 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 202
++DEA + TA
Sbjct: 105 IMDEAHFTDPASIAARGYISTRVEM-------------------------GEAAGIFMTA 139
Query: 203 TMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFT 248
T P ++ + + + + + + +TV F
Sbjct: 140 TPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFV 185
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 50.7 bits (120), Expect = 8e-07
Identities = 26/197 (13%), Positives = 43/197 (21%), Gaps = 36/197 (18%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
+ TAT P + + +S I + E+
Sbjct: 129 MGEAAGIFMTATPPGSRDPFPQSNAP----------------IMDEEREIPERSWNSGHE 172
Query: 299 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
V + + FV K + +A L K G L +
Sbjct: 173 WVTDFK--GKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI------------ 218
Query: 359 ILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSRERE 418
R+ ++ R D R +R+
Sbjct: 219 -----KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVT 273
Query: 419 REKRHHRRDRSKERDGK 435
RR R R+ K
Sbjct: 274 HSSAAQRRGRVG-RNPK 289
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 138 bits (348), Expect = 2e-37
Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS--------- 54
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE-TNKFGTPLGIRTVLVVGGLSREE 847
+P + R++ A+++ PTRELA Q+ + G + + GG + +
Sbjct: 55 GAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 138 bits (348), Expect = 2e-37
Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS--------- 54
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE-TNKFGTPLGIRTVLVVGGLSREE 1522
+P + R++ A+++ PTRELA Q+ + G + + GG + +
Sbjct: 55 GAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 6e-26
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ +P + R++
Sbjct: 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS---------GAYLIPLLERLDLK 68
Query: 62 DQGPYAIIMAPTRELAQQIEEE-TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A+++ PTRELA Q+ + G + + GG + + RL +VIA
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------- 175
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
K RQ ++++AT P
Sbjct: 176 ------------KNRQILLYSATFPL 189
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 7e-08
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATV 269
K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 133 bits (335), Expect = 8e-36
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
++ A+IM PTRELA Q + G GI ++ GG + +
Sbjct: 63 ---------VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 113
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
RL I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 114 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP- 172
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
Q+++F+AT P V+ +L +P + +
Sbjct: 173 ------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 133 bits (335), Expect = 8e-36
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
++ A+IM PTRELA Q + G GI ++ GG + +
Sbjct: 63 ---------VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 113
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
RL I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 114 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP- 172
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
Q+++F+AT P V+ +L +P + +
Sbjct: 173 ------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (249), Expect = 3e-24
Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 81/271 (29%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L ++
Sbjct: 16 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK---------VKPK 66
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+IM PTRELA Q + G GI ++ GG + + RL I++ T
Sbjct: 67 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 127 PGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP-------------- 172
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q+++
Sbjct: 173 -----------PTHQSLL------------------------------------------ 179
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272
F+AT P V+ +L +P + +
Sbjct: 180 -----FSATFPLTVKEFMVKHLHKPYEINLM 205
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 129 bits (325), Expect = 3e-33
Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 1026 NACTLHGGKGQEQREL----------ALNSLKGGSKDILVATDVAGRGIDIKD---VSMV 1072
NA + G AL + G D ++ + +
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTI 121
Query: 1073 INYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKDDSHL 1111
+ + T R GRTGR GK G+ V+ +
Sbjct: 122 ETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMF 161
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 129 bits (325), Expect = 3e-33
Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 1701 NACTLHGGKGQEQREL----------ALNSLKGGSKDILVATDVAGRGIDIKD---VSMV 1747
NA + G AL + G D ++ + +
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTI 121
Query: 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKDDSHL 1786
+ + T R GRTGR GK G+ V+ +
Sbjct: 122 ETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMF 161
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 64.6 bits (157), Expect = 2e-11
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 272 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 331
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 332 NACTLHGGKGQEQREL----------ALNSLKGGSKDILMAGDRRSR 368
NA + G AL + G D ++ +
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVT 108
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 123 bits (308), Expect = 4e-32
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
I+ + A ++ + + T I ++GG +++
Sbjct: 63 IKP-----ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP- 176
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 177 ------------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 123 bits (308), Expect = 4e-32
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
I+ + A ++ + + T I ++GG +++
Sbjct: 63 IKP-----ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP- 176
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 177 ------------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 89.7 bits (221), Expect = 1e-20
Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 77/270 (28%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++ I+ +
Sbjct: 16 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-----ERAEV 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A ++ + + T I ++GG +++ +L + IVI T
Sbjct: 71 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 131 PGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-------------- 176
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
K Q ++
Sbjct: 177 -----------KDLQMLV------------------------------------------ 183
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
F+AT+P ++ + Y+ P V++
Sbjct: 184 -----FSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 123 bits (309), Expect = 6e-32
Identities = 43/245 (17%), Positives = 66/245 (26%), Gaps = 59/245 (24%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ E L E +E K EP IQ+ L+ A TG GKT L L
Sbjct: 24 FPEDFLLKEFVEFFRK-CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
+ ++ PT L Q E K+ G+ T ++G
Sbjct: 83 ALKGKR------------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPK 130
Query: 850 FRL------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID---------- 893
+IVI T L L +I +D+ D ++
Sbjct: 131 REKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLH 186
Query: 894 -MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952
+GF D++ ++ TAT +
Sbjct: 187 LLGFHYDLKTKSWVGE-------------------------ARGCLMVSTATAKKGKKAE 221
Query: 953 ARSYL 957
L
Sbjct: 222 LFRQL 226
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 123 bits (309), Expect = 6e-32
Identities = 43/245 (17%), Positives = 66/245 (26%), Gaps = 59/245 (24%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ E L E +E K EP IQ+ L+ A TG GKT L L
Sbjct: 24 FPEDFLLKEFVEFFRK-CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
+ ++ PT L Q E K+ G+ T ++G
Sbjct: 83 ALKGKR------------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPK 130
Query: 1525 FRL------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID---------- 1568
+IVI T L L +I +D+ D ++
Sbjct: 131 REKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLH 186
Query: 1569 -MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627
+GF D++ ++ TAT +
Sbjct: 187 LLGFHYDLKTKSWVGE-------------------------ARGCLMVSTATAKKGKKAE 221
Query: 1628 ARSYL 1632
L
Sbjct: 222 LFRQL 226
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 113 bits (284), Expect = 1e-28
Identities = 37/218 (16%), Positives = 57/218 (26%), Gaps = 58/218 (26%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
EP IQ+ L+ A TG GKT L L +
Sbjct: 40 CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR----------- 88
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL------RLGCEIVI 119
++ PT L Q E K+ G+ T ++G +IVI
Sbjct: 89 -CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVI 147
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-----------MGFEPDVQKILEYMPV 168
T L L +I +D+ D ++ +GF D++
Sbjct: 148 TTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGE- 202
Query: 169 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 206
++ TAT
Sbjct: 203 ------------------------ARGCLMVSTATAKK 216
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 106 bits (266), Expect = 1e-26
Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 39/221 (17%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+G ++ + P R LA + E K+ + SR+E
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD-- 114
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
C+I++ T + ++ NR + + +V+DE + ++ ++ M N
Sbjct: 115 --CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-- 170
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
K + + +AT P +A
Sbjct: 171 --------------------KALRVIGLSATAPNV-TEIAE 190
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 106 bits (266), Expect = 1e-26
Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 39/221 (17%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+G ++ + P R LA + E K+ + SR+E
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD-- 114
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
C+I++ T + ++ NR + + +V+DE + ++ ++ M N
Sbjct: 115 --CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-- 170
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
K + + +AT P +A
Sbjct: 171 --------------------KALRVIGLSATAPNV-TEIAE 190
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.7 bits (242), Expect = 2e-23
Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------- 66
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+G ++ + P R LA + E K+ + SR+E C+I++
Sbjct: 67 --KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD----CDIIVT 120
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
T + ++ NR + + +V+DE + ++ ++ M N
Sbjct: 121 TSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN---------- 170
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKIL 210
K + + +AT P +
Sbjct: 171 ------------KALRVIGLSATAPNVTEI 188
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (254), Expect = 7e-25
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 39/230 (16%)
Query: 734 SLPTEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 792
+L + +++++ GY + P Q + I L RD + V TG GK+L + +P L+
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-- 65
Query: 793 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 852
++++P L + ++ G E
Sbjct: 66 -------------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 853 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 912
++ P RL+ +L + +DEA + G +
Sbjct: 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR------------- 159
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 960
E L + + TAT + + L P
Sbjct: 160 --------PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (254), Expect = 7e-25
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 39/230 (16%)
Query: 1409 SLPTEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 1467
+L + +++++ GY + P Q + I L RD + V TG GK+L + +P L+
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-- 65
Query: 1468 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 1527
++++P L + ++ G E
Sbjct: 66 -------------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 1528 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587
++ P RL+ +L + +DEA + G +
Sbjct: 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR------------- 159
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 1635
E L + + TAT + + L P
Sbjct: 160 --------PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 92.8 bits (229), Expect = 1e-21
Identities = 34/205 (16%), Positives = 58/205 (28%), Gaps = 36/205 (17%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
E GY + P Q + I L RD + V TG GK+L + +P L+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN------------- 65
Query: 63 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
++++P L + ++ G E ++ P
Sbjct: 66 --GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123
Query: 123 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 182
RL+ +L + +DEA + G + E
Sbjct: 124 ERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR---------------------PEY 162
Query: 183 KLLANYNSKKKYRQTVMFTATMPPA 207
L + + TAT
Sbjct: 163 AALGQLRQRFPTLPFMALTATADDT 187
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.1 bits (238), Expect = 3e-23
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1650 IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I+Q + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
G++G+A++F T +D +L++ S+ + P ++
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEK-FYSTQIEELPSDI 157
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.4 bits (236), Expect = 4e-23
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 975 IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I+Q + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQMM 1119
G++G+A++F T +D +L++
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFY 146
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 281 IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
I+Q + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 340 KGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRK 375
Q++R+ + + GS IL++ D +R +
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 96
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 92.7 bits (229), Expect = 4e-22
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
IEQ ++E ++ + L +L + ++F K+ LA L +G+ A +HG
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGRTG
Sbjct: 61 DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTG 120
Query: 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
RAGK+G A+S + + +++ M
Sbjct: 121 RAGKKGKAISIINRREYKKLRYIERAM 147
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 92.7 bits (229), Expect = 4e-22
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
IEQ ++E ++ + L +L + ++F K+ LA L +G+ A +HG
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGRTG
Sbjct: 61 DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTG 120
Query: 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
RAGK+G A+S + + +++ M
Sbjct: 121 RAGKKGKAISIINRREYKKLRYIERAM 147
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 6e-21
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 973 ERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
E I+Q + E+ K L ++ + +IF N K+ D L + + + + ++H
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 65
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+
Sbjct: 66 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 125
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
GR G++G+A++F DD + D++Q
Sbjct: 126 GRYGRKGVAINFVKNDDIRILRDIEQYY 153
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 6e-21
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 1648 ERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
E I+Q + E+ K L ++ + +IF N K+ D L + + + + ++H
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 65
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+
Sbjct: 66 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 125
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
GR G++G+A++F DD + D++Q
Sbjct: 126 GRYGRKGVAINFVKNDDIRILRDIEQYY 153
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 88.2 bits (218), Expect = 7e-21
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 60
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS---MVINYDMAKSIE 1082
NA + G ++VATD G S + +
Sbjct: 61 NAVAYYRGLDVSVI-------PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAV 113
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDD 1108
T R GRTGR GK G F +
Sbjct: 114 SRTQRRGRTGR-GKPG-IYRFVAPGE 137
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 88.2 bits (218), Expect = 7e-21
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 60
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS---MVINYDMAKSIE 1757
NA + G ++VATD G S + +
Sbjct: 61 NAVAYYRGLDVSVI-------PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAV 113
Query: 1758 DYTHRIGRTGRAGKEGLAVSFCTKDD 1783
T R GRTGR GK G F +
Sbjct: 114 SRTQRRGRTGR-GKPG-IYRFVAPGE 137
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 47.8 bits (113), Expect = 1e-06
Identities = 20/74 (27%), Positives = 27/74 (36%)
Query: 272 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 331
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 60
Query: 332 NACTLHGGKGQEQR 345
NA + G
Sbjct: 61 NAVAYYRGLDVSVI 74
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 88.7 bits (219), Expect = 8e-20
Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 16/151 (10%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+ + + + L +L + + II+ + A+ + + L+ G
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKNK------FRIGI 53
Query: 1035 GQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAKSIEDYTHRIG 1089
++ G D L+ T RG+D+ + + + + I
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGC----PSFRVTIE 109
Query: 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120
+ + + + L +
Sbjct: 110 DIDSLSPQMVKLLAYLYRNVDEIERLLPAVE 140
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 88.7 bits (219), Expect = 8e-20
Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 16/151 (10%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+ + + + L +L + + II+ + A+ + + L+ G
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKNK------FRIGI 53
Query: 1710 GQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAKSIEDYTHRIG 1764
++ G D L+ T RG+D+ + + + + I
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGC----PSFRVTIE 109
Query: 1765 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795
+ + + + L +
Sbjct: 110 DIDSLSPQMVKLLAYLYRNVDEIERLLPAVE 140
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 64.8 bits (157), Expect = 1e-11
Identities = 31/262 (11%), Positives = 69/262 (26%), Gaps = 21/262 (8%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
+ + + + L +L + + II+ + A+ + + L+ G
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKNK------FRIGI 53
Query: 341 GQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSR---ERDYDRVRERDTDRSR 397
++ G D L+ + R R R D
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDS 113
Query: 398 DDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKS 457
+ L R+ R K R + ++ +
Sbjct: 114 LSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIF 173
Query: 458 RDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAE 517
D Y Q G K LE+ + + K E ++ +
Sbjct: 174 PDLRTY---IQGSGRTSRLFAGGLTKGASFLLED---DSELLSAFIERAKLYDIEFKSID 227
Query: 518 ALRKRQAEVEEMRKKMEEERKK 539
+ + E++ ++++E R +
Sbjct: 228 EV-----DFEKLSRELDESRDR 244
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 89.2 bits (220), Expect = 1e-19
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLGY 1025
K + Q I + K KL E++ +++ +I+F N ++ A + L K G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 1026 NACTLHGGKGQEQR--------ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
A G +E +L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 246
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
S R GRTGR G + K
Sbjct: 247 VPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 276
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 89.2 bits (220), Expect = 1e-19
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLGY 1700
K + Q I + K KL E++ +++ +I+F N ++ A + L K G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 1701 NACTLHGGKGQEQR--------ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
A G +E +L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 246
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
S R GRTGR G + K
Sbjct: 247 VPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 276
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 80.9 bits (198), Expect = 2e-17
Identities = 36/154 (23%), Positives = 59/154 (38%)
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
++ + +LM + K II+ N + + A L+ G +A H G R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
+ I+VAT G GI+ +V V+++D+ ++IE Y GR GR G
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 1775 AVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
A+ F D + + LN
Sbjct: 130 AMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLN 163
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 78.5 bits (192), Expect = 1e-16
Identities = 34/141 (24%), Positives = 56/141 (39%)
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
++ + +LM + K II+ N + + A L+ G +A H G R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
+ I+VAT G GI+ +V V+++D+ ++IE Y GR GR G
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 1100 AVSFCTKDDSHLFYDLKQMMI 1120
A+ F D +
Sbjct: 130 AMLFYDPADMAWLRRCLEEKP 150
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
++ + +LM + K II+ N + + A L+ G +A H G R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 346 ELALNSLKGGSKDILMAGDRRSRSRSPPRKRR 377
+ I++A + P R
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 101
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.3 bits (181), Expect = 1e-15
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+G
Sbjct: 65 RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 124
Query: 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
R G GLA++ +D Y ++Q +
Sbjct: 125 RFGHLGLAINLINWNDRFNLYKIEQEL 151
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.3 bits (181), Expect = 1e-15
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+G
Sbjct: 65 RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 124
Query: 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
R G GLA++ +D Y ++Q +
Sbjct: 125 RFGHLGLAINLINWNDRFNLYKIEQEL 151
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.9 bits (183), Expect = 1e-15
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 976 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035
E + ++K +KL E+L R K +IIF + ++K + +
Sbjct: 69 EARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTS 123
Query: 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095
+E+RE L + G +V++ V GID+ D ++ + + S +Y R+GR R
Sbjct: 124 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
Query: 1096 KEGLAVSFCT 1105
K
Sbjct: 184 KGKKEAVLYE 193
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.9 bits (183), Expect = 1e-15
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 1651 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710
E + ++K +KL E+L R K +IIF + ++K + +
Sbjct: 69 EARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTS 123
Query: 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770
+E+RE L + G +V++ V GID+ D ++ + + S +Y R+GR R
Sbjct: 124 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
Query: 1771 KEGLAVSFCT 1780
K
Sbjct: 184 KGKKEAVLYE 193
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.6 bits (161), Expect = 5e-13
Identities = 50/157 (31%), Positives = 84/157 (53%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 61
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R GR
Sbjct: 62 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 121
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
G +GLA++F + ++ + Q +S P E+
Sbjct: 122 GTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 2e-12
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 61
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R GR
Sbjct: 62 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 121
Query: 1095 GKEGLAVSFCT-KDDSHLFYDLKQMM 1119
G +GLA++F + ++D+ + D++
Sbjct: 122 GTKGLAITFVSDENDAKILNDVQDRF 147
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.003
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKK 317
++Q L + +K +KL ++L+ V+IFV +
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 38
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 66.3 bits (160), Expect = 1e-12
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801
++ + +P Q + + + V TG GKTL ++ +
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK-CKETNCLIVLPTGLGKTLIAMMIAEYRL----------- 48
Query: 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861
G +++APT+ L Q E + + V + G S EE+ IV
Sbjct: 49 TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVA- 107
Query: 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 921
TP + + L + L + IV DEA R + + + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------- 154
Query: 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
K + TA+ E++
Sbjct: 155 ------------KNPLVIGLTASPGSTPEKIMEVINN 179
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 66.3 bits (160), Expect = 1e-12
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 1417 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476
++ + +P Q + + + V TG GKTL ++ +
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK-CKETNCLIVLPTGLGKTLIAMMIAEYRL----------- 48
Query: 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536
G +++APT+ L Q E + + V + G S EE+ IV
Sbjct: 49 TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVA- 107
Query: 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 1596
TP + + L + L + IV DEA R + + + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------- 154
Query: 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
K + TA+ E++
Sbjct: 155 ------------KNPLVIGLTASPGSTPEKIMEVINN 179
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 65.6 bits (158), Expect = 3e-12
Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 43/232 (18%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
++ + +P Q + + + V TG GKTL ++ +
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK-CKETNCLIVLPTGLGKTLIAMMIAEYRL----------- 48
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
G +++APT+ L Q E + + V + G S EE+ IV
Sbjct: 49 TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVA- 107
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TP + + L + L + IV DEA R + + + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------- 154
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP-----AKILEYMPVTNLKPDTEDAED 227
K + TA+ +++ + + +++ +E++ D
Sbjct: 155 ------------KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 64.3 bits (156), Expect = 4e-12
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
KPTE QI+ ++ +R E ++ V + A+ L L + G A
Sbjct: 11 KPTE--NQILDLMEGIRERAARGE--------RTLVTVLTVRMAEELTSFLVEHGIRARY 60
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1087
LH +R+ + L+ G D LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1088 IGRTGRAGKEGLAVSFCTKDD 1108
I GRA + + D
Sbjct: 121 IQTIGRAARNARGEVWLYADR 141
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 64.3 bits (156), Expect = 4e-12
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704
KPTE QI+ ++ +R E ++ V + A+ L L + G A
Sbjct: 11 KPTE--NQILDLMEGIRERAARGE--------RTLVTVLTVRMAEELTSFLVEHGIRARY 60
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1762
LH +R+ + L+ G D LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1763 IGRTGRAGKEGLAVSFCTKDD 1783
I GRA + + D
Sbjct: 121 IQTIGRAARNARGEVWLYADR 141
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 62.1 bits (150), Expect = 3e-11
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
+PT+ QI ++ E +R + E ++ KK A+ L L++ G
Sbjct: 11 RPTK--GQIDDLIGEIRERVERNE--------RTLVTTLTKKMAEDLTDYLKEAGIKVAY 60
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1087
LH +R + L+ G D+LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1088 IGRTGRAGKEGLAVSFCTKDDSHLFY 1113
I GRA + D
Sbjct: 121 IQTIGRAARNANGHVIMYADTITKSM 146
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 62.1 bits (150), Expect = 3e-11
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704
+PT+ QI ++ E +R + E ++ KK A+ L L++ G
Sbjct: 11 RPTK--GQIDDLIGEIRERVERNE--------RTLVTTLTKKMAEDLTDYLKEAGIKVAY 60
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1762
LH +R + L+ G D+LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1763 IGRTGRAGKEGLAVSFCTKDDSHLFY 1788
I GRA + D
Sbjct: 121 IQTIGRAARNANGHVIMYADTITKSM 146
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 984 EQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGL--------------------- 1020
+R K E++ V + V++F + ++GA+ A L
Sbjct: 22 STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEEN 81
Query: 1021 ---------EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1071
E + A H G QR + ++ + G+ ++VAT G+++ +
Sbjct: 82 EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV 141
Query: 1072 VI-------NYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFYDLKQMMISS 1122
++ Y + +Y GR GR G G A+ K D + K+ +
Sbjct: 142 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV--KRYIFGE 199
Query: 1123 P 1123
P
Sbjct: 200 P 200
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.6 bits (151), Expect = 3e-11
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 1659 EQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGL--------------------- 1695
+R K E++ V + V++F + ++GA+ A L
Sbjct: 22 STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEEN 81
Query: 1696 ---------EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746
E + A H G QR + ++ + G+ ++VAT G+++ +
Sbjct: 82 EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV 141
Query: 1747 VI-------NYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFYDLKQMMISS 1797
++ Y + +Y GR GR G G A+ K D + K+ +
Sbjct: 142 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV--KRYIFGE 199
Query: 1798 P 1798
P
Sbjct: 200 P 200
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 46.9 bits (111), Expect = 1e-05
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
IE + + + +L +P F+ + A+V+A L K G + L+
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADK--RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT 70
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
+ + K D ++ATD+A G ++ V V++ A
Sbjct: 71 FEREYPTI----KQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 46.9 bits (111), Expect = 1e-05
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
IE + + + +L +P F+ + A+V+A L K G + L+
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADK--RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT 70
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
+ + K D ++ATD+A G ++ V V++ A
Sbjct: 71 FEREYPTI----KQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 0.003
Identities = 31/218 (14%), Positives = 78/218 (35%), Gaps = 4/218 (1%)
Query: 386 DRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRER 445
+ +D D + ++ ++ ++++ D
Sbjct: 75 RDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSP 134
Query: 446 REEE-ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARS 504
EEE +G K + Q + E+ + E + L +K+ +
Sbjct: 135 LEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ 194
Query: 505 KPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK--EASFESKRENFDARLRR 562
+ LT++E+ E R + + K + E ++K ++ + E S++ + ++
Sbjct: 195 TDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 254
Query: 563 DREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRR 600
DR + ++ E K +E+E + +KE + + +
Sbjct: 255 DRVQLLKEQERTLALKLQEQE-QLLKEGFQKESRIMKN 291
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 0.004
Identities = 27/208 (12%), Positives = 72/208 (34%), Gaps = 10/208 (4%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
+ + D+ + + + + E ++ + + + +
Sbjct: 102 AAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLK 161
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA 494
K E R+ + EE + KS++ + E+E + + + E A
Sbjct: 162 KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKA---ESAQA 218
Query: 495 KKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRE 554
K E + K E+ + R Q ++++ +KME +R + + + +E
Sbjct: 219 SAKMLHEMQRK-----NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273
Query: 555 NFDARLRRDREKKKEDPEEKELNKDKER 582
+L ++ +K+ + E+ + +
Sbjct: 274 Q--EQLLKEGFQKESRIMKNEIQDLQTK 299
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 38.3 bits (89), Expect = 0.003
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 970 KPTERIEQ--IVYILSEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGY 1025
+P R ++ ++Y + + K K + E + + PV++ + +++++K L+ G
Sbjct: 1 RPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI 59
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD--------M 1077
L+ + + ++ + + G+ + +AT++AGRG DIK V
Sbjct: 60 PHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 117
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
+S GR+GR G G+ + + +D
Sbjct: 118 HESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 38.3 bits (89), Expect = 0.003
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 1645 KPTERIEQ--IVYILSEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGY 1700
+P R ++ ++Y + + K K + E + + PV++ + +++++K L+ G
Sbjct: 1 RPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI 59
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD--------M 1752
L+ + + ++ + + G+ + +AT++AGRG DIK V
Sbjct: 60 PHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 117
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
+S GR+GR G G+ + + +D
Sbjct: 118 HESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82
+ A TGSGK+ QG +++ P+
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGA 51
Query: 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 142
+K +R T L + I
Sbjct: 52 YMSKAHG-------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDII 98
Query: 143 VLDEA---DRMIDMGF 155
+ DE D +G
Sbjct: 99 ICDECHSTDATSILGI 114
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ A TGSGK+ QG +++ P+
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGA 51
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
+K +R T L + I
Sbjct: 52 YMSKAHG-------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDII 98
Query: 884 VLDEA---DRMIDMGF 896
+ DE D +G
Sbjct: 99 ICDECHSTDATSILGI 114
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ A TGSGK+ QG +++ P+
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGA 51
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
+K +R T L + I
Sbjct: 52 YMSKAHG-------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDII 98
Query: 1559 VLDEA---DRMIDMGF 1571
+ DE D +G
Sbjct: 99 ICDECHSTDATSILGI 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1832 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.97 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.97 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.96 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.94 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.94 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.93 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.93 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.93 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.93 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.93 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.93 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.92 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.92 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.92 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.92 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.92 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.91 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.91 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.89 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.89 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.88 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.87 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.87 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.86 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.86 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.86 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.81 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.81 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.8 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.8 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.73 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.71 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.71 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.7 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.64 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.62 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.61 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.6 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.59 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.59 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.58 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.57 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.56 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.55 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.54 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.54 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.54 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.53 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.51 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.51 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.5 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.49 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.43 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.4 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.31 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.27 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.21 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.07 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.06 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.02 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.01 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.0 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.93 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.88 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.51 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.49 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.47 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.34 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.26 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.24 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.23 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.22 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 98.17 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.02 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.99 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.51 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.31 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.02 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.16 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.76 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.59 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.22 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.15 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.74 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 93.04 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.98 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.42 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 91.78 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.63 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 91.5 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.21 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.9 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 90.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.55 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.32 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.47 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.89 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.69 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.87 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.33 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.48 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.86 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 85.45 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.42 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 84.66 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 84.54 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 83.57 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 82.45 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 82.01 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.07 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 80.07 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-45 Score=414.83 Aligned_cols=191 Identities=30% Similarity=0.555 Sum_probs=180.9
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|++.||.+|||||++|||+++.|+|++++||||||||+||+||++++|... ...|++||++||||||.|++
T Consensus 32 L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~---------~~~~~~lil~PtreLa~Qi~ 102 (222)
T d2j0sa1 32 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---------VRETQALILAPTRELAVQIQ 102 (222)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc---------ccCceeEEecchHHHHHHHH
Confidence 578899999999999999999999999999999999999999999876432 46789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++.+.++++.+++||.....+...+..++||||+|||||.+++..+.+.+++++||||||||+||++||.+++..
T Consensus 103 ~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~ 182 (222)
T d2j0sa1 103 KGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYD 182 (222)
T ss_dssp HHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred HHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|++.+| +.
T Consensus 183 I~~~l~------------------------------------------------------------------------~~ 190 (222)
T d2j0sa1 183 VYRYLP------------------------------------------------------------------------PA 190 (222)
T ss_dssp HHTTSC------------------------------------------------------------------------TT
T ss_pred HHHhCC------------------------------------------------------------------------CC
Confidence 999886 12
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
||++|||||||+.|++||+.||++|++|.||.
T Consensus 191 ~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~r 222 (222)
T d2j0sa1 191 TQVVLISATLPHEILEMTNKFMTDPIRILVKR 222 (222)
T ss_dssp CEEEEEESCCCHHHHTTGGGTCSSCEEECCCG
T ss_pred CEEEEEEEeCCHHHHHHHHHHCCCCEEEEEeC
Confidence 79999999999999999999999999999874
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-42 Score=390.32 Aligned_cols=188 Identities=33% Similarity=0.604 Sum_probs=175.1
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||++|||||++|||.+++|+|++++||||||||+||+||+|+++.. ...+|.+||++||||||.|++
T Consensus 18 l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~---------~~~~~~~lil~pt~el~~q~~ 88 (206)
T d1veca_ 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---------KKDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------TSCSCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc---------cccCcceEEEeecchhhHHHH
Confidence 67899999999999999999999999999999999999999999987643 256889999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++..+.... ++...+.+||.....+...+..+|+|||+|||||.+++..+.+.+++++||||||||+|+++||.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~ 168 (206)
T d1veca_ 89 QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIME 168 (206)
T ss_dssp HHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHH
Confidence 9999987654 577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 169 ~I~~~~~~------------------------------------------------------------------------ 176 (206)
T d1veca_ 169 DIILTLPK------------------------------------------------------------------------ 176 (206)
T ss_dssp HHHHHSCT------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99998861
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEE
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVY 270 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1832)
.||++|||||||+.|+++++.||++|+.|+
T Consensus 177 ~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I~ 206 (206)
T d1veca_ 177 NRQILLYSATFPLSVQKFMNSHLEKPYEIN 206 (206)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHCSSCEEEC
T ss_pred CCEEEEEEecCCHHHHHHHHHHCCCCEEEC
Confidence 289999999999999999999999998874
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=3.2e-42 Score=394.46 Aligned_cols=203 Identities=43% Similarity=0.703 Sum_probs=183.7
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||.+|||||++|||.++.|+|++++||||||||+||+||+|++|..............+|+||||+||+|||.|++
T Consensus 36 L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~ 115 (238)
T d1wrba1 36 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115 (238)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchh
Confidence 67889999999999999999999999999999999999999999999976543333333457899999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++..++...++++++++||.....|...+..+|||||+|||||.+++..+.+.|.+++++||||||+||++||.+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~ 195 (238)
T d1wrba1 116 SESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 195 (238)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred eeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|++.+.... ..-
T Consensus 196 Il~~~~~~~--------------------------------------------------------------------~~~ 207 (238)
T d1wrba1 196 IIEESNMPS--------------------------------------------------------------------GIN 207 (238)
T ss_dssp HHHSSCCCC--------------------------------------------------------------------GGG
T ss_pred HHHHhcCCC--------------------------------------------------------------------CCC
Confidence 998764110 123
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEc
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1832)
||++|||||||+.|++||+.||++|++|.||
T Consensus 208 ~Q~il~SAT~~~~v~~l~~~~~~~p~~i~vg 238 (238)
T d1wrba1 208 RQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238 (238)
T ss_dssp CEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CEEEEEeeeCCHHHHHHHHHHCCCCEEEEeC
Confidence 8999999999999999999999999999998
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-42 Score=387.17 Aligned_cols=189 Identities=30% Similarity=0.561 Sum_probs=174.2
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||.+|||||++|||.++.|+|++++||||||||+||+||+++++.. ...+|.+||++||||||.|++
T Consensus 16 l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~---------~~~~~~~lil~PtreL~~qi~ 86 (207)
T d1t6na_ 16 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVSVLVMCHTRELAFQIS 86 (207)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------CTTCCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc---------cCCCceEEEEeccchhhHHHH
Confidence 56789999999999999999999999999999999999999999976533 256789999999999999999
Q ss_pred HHHHhcCCCcc-ceEEEEeCCcchHHHhHHhh-cCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhc-CCChHH
Q psy6409 82 EETNKFGTPLG-IRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPD 158 (1832)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~gg~~~~~q~~~l~-~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~-~gf~~~ 158 (1832)
+.++.++...+ ++.++++||.+...|...+. .+|||||+|||||.+++.++.+.++++++|||||||+|++ +||.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~ 166 (207)
T d1t6na_ 87 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD 166 (207)
T ss_dssp HHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHH
T ss_pred HHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHH
Confidence 99999998865 67889999999999988885 5799999999999999999999999999999999999998 699999
Q ss_pred HHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccc
Q psy6409 159 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238 (1832)
Q Consensus 159 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1832)
+..|++.+|
T Consensus 167 i~~I~~~~~----------------------------------------------------------------------- 175 (207)
T d1t6na_ 167 VQEIFRMTP----------------------------------------------------------------------- 175 (207)
T ss_dssp HHHHHHTSC-----------------------------------------------------------------------
T ss_pred HHHHHHhCC-----------------------------------------------------------------------
Confidence 999999876
Q ss_pred ccceeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
+-+|++|||||||+.|++||+.||+||++|+|
T Consensus 176 -~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 176 -HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp -SSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred -CCCEEEEEeeeCCHHHHHHHHHHCCCCEEEeC
Confidence 12899999999999999999999999999986
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-42 Score=388.09 Aligned_cols=191 Identities=32% Similarity=0.560 Sum_probs=175.5
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|++.||.+|||||++|||.++.|+|++++||||||||+||+||+++++.. ...+|++||++||+|||.|++
T Consensus 27 L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~---------~~~~~~alil~Pt~eL~~Q~~ 97 (218)
T d2g9na1 27 IYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL---------DLKATQALVLAPTRELAQQIQ 97 (218)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT---------TCCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc---------cccCccEEEEcccchhhhhHH
Confidence 57899999999999999999999999999999999999999999988743 257899999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhh-cCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~-~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
++++.++...++...+++||.....+..... .+|+|||+|||||.+++.++...+++++||||||||+|+++||.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~ 177 (218)
T d2g9na1 98 KVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 177 (218)
T ss_dssp HHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHH
T ss_pred HHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHH
Confidence 9999999999999999999888777666554 679999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 178 ~Il~~~~~------------------------------------------------------------------------ 185 (218)
T d2g9na1 178 DIFQKLNS------------------------------------------------------------------------ 185 (218)
T ss_dssp HHHHHSCT------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99998861
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
.+|++|||||||+.|++++..||+||++|+|+.
T Consensus 186 ~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~~ 218 (218)
T d2g9na1 186 NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 218 (218)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHCSSCEEEECCC
T ss_pred CCeEEEEEecCCHHHHHHHHHHCCCCEEEEEeC
Confidence 289999999999999999999999999999973
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-41 Score=376.97 Aligned_cols=188 Identities=32% Similarity=0.570 Sum_probs=167.1
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|++.||.+|||||++|||.++.|+|++++||||||||+||+||++++|.. ...+|.+|||+||+|||.|++
T Consensus 25 L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~---------~~~~~~~lil~pt~el~~q~~ 95 (212)
T d1qdea_ 25 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---------SVKAPQALMLAPTRELALQIQ 95 (212)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------TCCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc---------cCCCcceEEEcccHHHhhhhh
Confidence 57899999999999999999999999999999999999999999987743 256899999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
..+..++....+...+++||....+|...++ +|+|||+|||||..++..+.+.|++++||||||||+|+|+||.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~ 174 (212)
T d1qdea_ 96 KVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 174 (212)
T ss_dssp HHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHH
Confidence 9999999999999999999999998888776 789999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|++.+|. -
T Consensus 175 I~~~~~~------------------------------------------------------------------------~ 182 (212)
T d1qdea_ 175 IFTLLPP------------------------------------------------------------------------T 182 (212)
T ss_dssp HHHHSCT------------------------------------------------------------------------T
T ss_pred HHHhCCC------------------------------------------------------------------------C
Confidence 9998862 2
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
+|++|||||||+.|++||..||++|++|.|
T Consensus 183 ~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~v 212 (212)
T d1qdea_ 183 TQVVLLSATMPNDVLEVTTKFMRNPVRILV 212 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 899999999999999999999999999975
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-39 Score=364.76 Aligned_cols=190 Identities=33% Similarity=0.619 Sum_probs=179.8
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|++.||.+|||+|++|||+++.|+|+++.||||||||+||++|+++++... ..++.+++++|+++++.|++
T Consensus 16 L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 86 (206)
T d1s2ma1 16 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---------LNKIQALIMVPTRELALQTS 86 (206)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccc---------cccccceeeccchhhhhhhh
Confidence 678999999999999999999999999999999999999999999876432 46788999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
.....++...++++.+++||.....+...+..+|+|||+|||||.+++..+.+.|.+++||||||||+|+++||.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~ 166 (206)
T d1s2ma1 87 QVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQ 166 (206)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHH
T ss_pred hhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|++++|. .
T Consensus 167 I~~~l~~------------------------------------------------------------------------~ 174 (206)
T d1s2ma1 167 ILSFLPP------------------------------------------------------------------------T 174 (206)
T ss_dssp HHTTSCS------------------------------------------------------------------------S
T ss_pred HHHhCCC------------------------------------------------------------------------C
Confidence 9998861 2
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEc
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1832)
+|++|||||||+.|.+++..||++|++|.|+
T Consensus 175 ~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 175 HQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp CEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred CEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 7999999999999999999999999999875
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-38 Score=357.23 Aligned_cols=210 Identities=29% Similarity=0.524 Sum_probs=195.3
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
..+...+|++++|++.++++|+++||..|||+|.+|||.+++|+|++++||||||||+||++|+++++.. .
T Consensus 12 ~~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~---------~ 82 (222)
T d2j0sa1 12 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---------Q 82 (222)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---------T
T ss_pred CCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc---------c
Confidence 3455668999999999999999999999999999999999999999999999999999999999986532 3
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
...++++|++||+|||.|+++.+.+++...++++..++||.....+...+..+++|+|+|||+|.+++..+...++++++
T Consensus 83 ~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~ 162 (222)
T d2j0sa1 83 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 162 (222)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred ccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhccccccccccccee
Confidence 45789999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
+|+||||+|++.||.+++..|+..+| ..+|+++||||+|+.+..+++.++.+|..
T Consensus 163 lVlDEaD~ll~~~f~~~i~~I~~~l~-------------------------~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~ 217 (222)
T d2j0sa1 163 LVLDEADEMLNKGFKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDPIR 217 (222)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSC-------------------------TTCEEEEEESCCCHHHHTTGGGTCSSCEE
T ss_pred eeecchhHhhhcCcHHHHHHHHHhCC-------------------------CCCEEEEEEEeCCHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999886 34799999999999999999999999988
Q ss_pred EEEc
Q psy6409 963 VYIG 966 (1832)
Q Consensus 963 v~~~ 966 (1832)
+.++
T Consensus 218 I~V~ 221 (222)
T d2j0sa1 218 ILVK 221 (222)
T ss_dssp ECCC
T ss_pred EEEe
Confidence 7654
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-38 Score=355.17 Aligned_cols=186 Identities=37% Similarity=0.617 Sum_probs=172.8
Q ss_pred cccccCCCCChhhhhhcccccCCC-cEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 80 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~-d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi 80 (1832)
|.+.||.+|||+|.+|||.++.|+ |++++||||||||+||++|++..+.. ..+|.+|||+||+|||.|+
T Consensus 19 l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~----------~~~~~~lil~pt~~l~~q~ 88 (208)
T d1hv8a1 19 IRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNGIEAIILTPTRELAIQV 88 (208)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSSCCEEEECSCHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc----------ccCcceEEEeeccccchhh
Confidence 567899999999999999999985 99999999999999999999975432 4688999999999999999
Q ss_pred HHHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 81 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
++++++++...++++.+.+|+.+..+|.+.++ +|+|||+|||||.+++.++.+.++++++||+||||+|++.||.+++.
T Consensus 89 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~ 167 (208)
T d1hv8a1 89 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVE 167 (208)
T ss_dssp HHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHH
T ss_pred hhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHH
Confidence 99999999999999999999999999988774 79999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+| +
T Consensus 168 ~I~~~~~------------------------------------------------------------------------~ 175 (208)
T d1hv8a1 168 KILNACN------------------------------------------------------------------------K 175 (208)
T ss_dssp HHHHTSC------------------------------------------------------------------------S
T ss_pred HHHHhCC------------------------------------------------------------------------C
Confidence 9998775 1
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEE
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVY 270 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1832)
.+|+++||||||+.|.++|..||+||..|-
T Consensus 176 ~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~ 205 (208)
T d1hv8a1 176 DKRILLFSATMPREILNLAKKYMGDYSFIK 205 (208)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred CCeEEEEEccCCHHHHHHHHHHCCCCeEEE
Confidence 279999999999999999999999998875
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=1.6e-36 Score=347.02 Aligned_cols=225 Identities=40% Similarity=0.654 Sum_probs=200.2
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...|+++.+|++++|+++++++|.+.||..|||+|.+|||.+++|+|++++||||||||+||++|+++++..........
T Consensus 14 ~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~ 93 (238)
T d1wrba1 14 YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRY 93 (238)
T ss_dssp SSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999886432222222
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
....++++|||+||++||.|+...+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+...+..+
T Consensus 94 ~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v 173 (238)
T d1wrba1 94 SKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFC 173 (238)
T ss_dssp -CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceecccc
Confidence 34568899999999999999999999999999999999999999888887888899999999999999999988899999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
.++||||||+|++.+|.+++..|+..+... ....+|+++||||+|..++.+++.|+.+|
T Consensus 174 ~~lViDEaD~ll~~~f~~~i~~Il~~~~~~---------------------~~~~~Q~il~SAT~~~~v~~l~~~~~~~p 232 (238)
T d1wrba1 174 KYIVLDEADRMLDMGFEPQIRKIIEESNMP---------------------SGINRQTLMFSATFPKEIQKLAADFLYNY 232 (238)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCC---------------------CGGGCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred ceeeeehhhhhhhhccHHHHHHHHHHhcCC---------------------CCCCCEEEEEeeeCCHHHHHHHHHHCCCC
Confidence 999999999999999999999999876421 12357999999999999999999999999
Q ss_pred cEEEEc
Q psy6409 961 ATVYIG 966 (1832)
Q Consensus 961 ~~v~~~ 966 (1832)
..+.+|
T Consensus 233 ~~i~vg 238 (238)
T d1wrba1 233 IFMTVG 238 (238)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 888765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-36 Score=336.08 Aligned_cols=202 Identities=33% Similarity=0.592 Sum_probs=186.4
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|||+|++|||.+++|+|++++||||||||+||++|+++.+. ....++.
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~---------~~~~~~~ 73 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLD---------LKKDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCC---------TTSCSCC
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhccc---------ccccCcc
Confidence 5899999999999999999999999999999999999999999999999999999999998653 2356889
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+||++||++||.|++..+..+.... ++.+...+|+.....+...+..+++|||+|||++.+++..+.+.++++++||+|
T Consensus 74 ~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlD 153 (206)
T d1veca_ 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred eEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEe
Confidence 9999999999999999999886644 577888889998888888888899999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
|||.|++.||.+++..|+..+| ..+|+++||||+|+.+..+++.++.+|..+
T Consensus 154 EaD~ll~~~f~~~i~~I~~~~~-------------------------~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 154 EADKLLSQDFVQIMEDIILTLP-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSC-------------------------TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccccccccchHHHHHHHHHhCC-------------------------CCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999986 347999999999999999999999999764
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-36 Score=341.18 Aligned_cols=212 Identities=31% Similarity=0.527 Sum_probs=191.5
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
++.|+++.+|++++|++.++++|.++||..|||+|++|||.++.|+|++++||||||||++|++|+++.+..
T Consensus 5 ~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~-------- 76 (218)
T d2g9na1 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------- 76 (218)
T ss_dssp CCCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT--------
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc--------
Confidence 346889999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH-hcCCceeecCHHHHHHHHHccccccCC
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYLVLNQ 879 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l-~~~~~IlV~TP~rL~d~l~~~~~~l~~ 879 (1832)
...++++||++||++||.|++..+..++...++.+..++|+.....+.... ..+++|+|+||++|.+++.++...++.
T Consensus 77 -~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~ 155 (218)
T d2g9na1 77 -DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 155 (218)
T ss_dssp -TCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred -cccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCccccc
Confidence 346889999999999999999999999999999999998887765544333 346899999999999999999899999
Q ss_pred ceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 880 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+++||+||||+|++.+|.+.+..|+..+| ..+|+++||||+|+.+..+++.|+.+
T Consensus 156 l~~lVlDEaD~ll~~~f~~~~~~Il~~~~-------------------------~~~Q~il~SAT~~~~v~~~~~~~l~~ 210 (218)
T d2g9na1 156 IKMFVLDEADEMLSRGFKDQIYDIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRD 210 (218)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEEESCCCHHHHHHHHHHCSS
T ss_pred ceEEEeeecchhhcCchHHHHHHHHHhCC-------------------------CCCeEEEEEecCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999886 34799999999999999999999999
Q ss_pred CcEEEEc
Q psy6409 960 PATVYIG 966 (1832)
Q Consensus 960 p~~v~~~ 966 (1832)
|..+.+.
T Consensus 211 pv~i~v~ 217 (218)
T d2g9na1 211 PIRILVK 217 (218)
T ss_dssp CEEEECC
T ss_pred CEEEEEe
Confidence 9988764
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-36 Score=336.27 Aligned_cols=210 Identities=30% Similarity=0.523 Sum_probs=186.6
Q ss_pred CCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhc
Q psy6409 720 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799 (1832)
Q Consensus 720 ~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~ 799 (1832)
|.+.|+++.+|++++|++.++++|+++||+.|||+|.+|||.++.|+|++++||||||||++|++|+++.+.
T Consensus 2 ~~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~-------- 73 (212)
T d1qdea_ 2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID-------- 73 (212)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCC--------
T ss_pred CCCCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhh--------
Confidence 457899999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred cccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCC
Q psy6409 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQ 879 (1832)
Q Consensus 800 ~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~ 879 (1832)
....++.++|++||++||.|+...+..+.....+.+..+.|+....++...++ +++|+|+||+++.+++..+.+.+.+
T Consensus 74 -~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~~~~l~~ 151 (212)
T d1qdea_ 74 -TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDK 151 (212)
T ss_dssp -TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred -ccCCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccCceecCc
Confidence 23568999999999999999999999999999999999999888777665554 7899999999999999999999999
Q ss_pred ceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 880 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
++++|+||||+|++++|.+.+..|+..++ ..+|+++||||+|+.+..+++.|+.+
T Consensus 152 l~~lVlDEad~lld~~f~~~v~~I~~~~~-------------------------~~~Q~vl~SAT~~~~v~~l~~~~l~~ 206 (212)
T d1qdea_ 152 IKMFILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRN 206 (212)
T ss_dssp CCEEEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred ceEEeehhhhhhcccchHHHHHHHHHhCC-------------------------CCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999886 24799999999999999999999999
Q ss_pred CcEEE
Q psy6409 960 PATVY 964 (1832)
Q Consensus 960 p~~v~ 964 (1832)
|..+.
T Consensus 207 Pv~i~ 211 (212)
T d1qdea_ 207 PVRIL 211 (212)
T ss_dssp CEEEC
T ss_pred CEEEe
Confidence 97764
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.2e-36 Score=342.84 Aligned_cols=189 Identities=37% Similarity=0.579 Sum_probs=171.4
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|++.||.+|||+|++|||+++.|+|++++||||||||+||++|+++.+... ...+.+++++|+++++.|..
T Consensus 16 l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 86 (209)
T d1q0ua_ 16 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEVQAVITAPTRELATQIY 86 (209)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccc---------cccccccccccccchhHHHH
Confidence 578999999999999999999999999999999999999999999765432 46778999999999999998
Q ss_pred HHHHhcCCC----ccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChH
Q psy6409 82 EETNKFGTP----LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 157 (1832)
Q Consensus 82 ~~~~~~~~~----~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~ 157 (1832)
..+...+.. ..+...+++|+.+...+...+..+|+|||+|||||.+++.++...++++++|||||||+|+++||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~ 166 (209)
T d1q0ua_ 87 HETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFIT 166 (209)
T ss_dssp HHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHH
T ss_pred HHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHH
Confidence 877765444 3466778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccc
Q psy6409 158 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237 (1832)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1832)
++..|++.+|. +
T Consensus 167 ~v~~I~~~~~~----------------------------------------------------~---------------- 178 (209)
T d1q0ua_ 167 DVDQIAARMPK----------------------------------------------------D---------------- 178 (209)
T ss_dssp HHHHHHHTSCT----------------------------------------------------T----------------
T ss_pred HHHHHHHHCCC----------------------------------------------------C----------------
Confidence 99999988761 1
Q ss_pred cccceeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 238 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
+|++|||||||+.|++|++.||++|+.|.|
T Consensus 179 ----~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 179 ----LQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp ----CEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred ----CEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 799999999999999999999999999986
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-35 Score=331.70 Aligned_cols=204 Identities=29% Similarity=0.541 Sum_probs=184.6
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
+.|++++|++.++++|.++||+.|||+|++|||.+++|+|++++||||||||+||++|+++.+. ....+++
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~---------~~~~~~~ 71 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE---------PVTGQVS 71 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCC---------CCTTCCC
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeec---------ccCCCce
Confidence 4799999999999999999999999999999999999999999999999999999999997642 2356789
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCC-CeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~-i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
++|++|||+||.|+.+.+..++..++ +++..++||.....+...+. .+++|+|+|||+|.+++..+.+.++++.++|+
T Consensus 72 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVl 151 (207)
T d1t6na_ 72 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 151 (207)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeeh
Confidence 99999999999999999999988764 67788899998887776664 57899999999999999998889999999999
Q ss_pred ecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 886 DEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 886 DEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
||||+|++. ||.+.+..|+..+| ..+|+++||||+|+.++++++.++.+|..+.
T Consensus 152 DEaD~ll~~~~~~~~i~~I~~~~~-------------------------~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 152 DECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hhhhhhhhcCCcHHHHHHHHHhCC-------------------------CCCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999984 89999999998886 3479999999999999999999999998775
Q ss_pred E
Q psy6409 965 I 965 (1832)
Q Consensus 965 ~ 965 (1832)
+
T Consensus 207 V 207 (207)
T d1t6na_ 207 V 207 (207)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.5e-34 Score=319.18 Aligned_cols=202 Identities=37% Similarity=0.599 Sum_probs=185.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~gr-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
.+|++++|+++++++|.++||.+|||+|.++||.++.|+ |+|++||||||||++|++|++... ....++
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~----------~~~~~~ 73 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV----------NENNGI 73 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHS----------CSSSSC
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccc----------ccccCc
Confidence 489999999999999999999999999999999999985 999999999999999999998753 235688
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++||++||.|+...+..+....+.++..++|+....++...+ .+++|+|+||++|.+++.++.+.++++++||||
T Consensus 74 ~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViD 152 (208)
T d1hv8a1 74 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILD 152 (208)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred ceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEE
Confidence 9999999999999999999999999999999999999887776655 479999999999999999999899999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
|||+|++.+|.+++..|+..++ ..+|+++||||+|+.+.++++.|+++|..+..
T Consensus 153 Ead~l~~~~~~~~i~~I~~~~~-------------------------~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~ 206 (208)
T d1hv8a1 153 EADEMLNMGFIKDVEKILNACN-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA 206 (208)
T ss_dssp THHHHHTTTTHHHHHHHHHTSC-------------------------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred ChHHhhcCCChHHHHHHHHhCC-------------------------CCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence 9999999999999999998885 34799999999999999999999999877643
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-33 Score=317.42 Aligned_cols=205 Identities=32% Similarity=0.595 Sum_probs=191.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|++.||..|||+|.+|||.+++|+|+|++||||||||++|++|+++.+. ....++.
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~---------~~~~~~~ 71 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK---------PKLNKIQ 71 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCC---------TTSCSCC
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccc---------ccccccc
Confidence 3799999999999999999999999999999999999999999999999999999999998653 2346788
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+++++|+.+++.|....+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+.+.+++++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DE 151 (206)
T d1s2ma1 72 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 151 (206)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred ceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeec
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
||+|++.+|.+++..|+..++ +.+|+++||||+|+.+..++..|+.+|..+.++
T Consensus 152 aD~l~~~~f~~~v~~I~~~l~-------------------------~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 152 ADKMLSRDFKTIIEQILSFLP-------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp HHHHSSHHHHHHHHHHHTTSC-------------------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred hhhhhhhhhHHHHHHHHHhCC-------------------------CCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence 999999999999999999886 247999999999999999999999999877543
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=1e-31 Score=302.25 Aligned_cols=204 Identities=35% Similarity=0.553 Sum_probs=181.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
+.|++++|+++++++|++.||..|||+|.+|||.+++|+|++++||||||||++|++|+++.+. .....+.
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~---------~~~~~~~ 71 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIK---------PERAEVQ 71 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCC---------TTSCSCC
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccc---------ccccccc
Confidence 4799999999999999999999999999999999999999999999999999999999997653 2345678
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC----CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL----GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~----~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~l 883 (1832)
+++++|+.+++.+....+....... ...+.++.|+.+...+...+..+++|+|+||+++.+++.+....++++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~l 151 (209)
T d1q0ua_ 72 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 151 (209)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred ccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEE
Confidence 9999999999999988887654433 456777777777776666677789999999999999999988899999999
Q ss_pred EEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
|+||||+|++++|++++..|+..++ +.+|+++||||+|+.+.++++.++.+|..+
T Consensus 152 ViDEad~ll~~~f~~~v~~I~~~~~-------------------------~~~Q~il~SATl~~~v~~l~~~~l~~p~~i 206 (209)
T d1q0ua_ 152 VVDEADLMLDMGFITDVDQIAARMP-------------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFV 206 (209)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSC-------------------------TTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred EEeecccccccccHHHHHHHHHHCC-------------------------CCCEEEEEEccCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999885 347999999999999999999999999877
Q ss_pred EE
Q psy6409 964 YI 965 (1832)
Q Consensus 964 ~~ 965 (1832)
.+
T Consensus 207 ~V 208 (209)
T d1q0ua_ 207 HV 208 (209)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.97 E-value=1.2e-30 Score=311.13 Aligned_cols=276 Identities=18% Similarity=0.147 Sum_probs=189.7
Q ss_pred HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEc
Q psy6409 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 841 (1832)
Q Consensus 762 il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~G 841 (1832)
+..|+++|+.||||||||++|++|++..... .+.++||++||++||.|+++.++.++.... ....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-----------~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~----~~~~ 70 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-----------RGLRTLILAPTRVVAAEMEEALRGLPIRYQ----TPAI 70 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------HTCCEEEEESSHHHHHHHHHHTTTSCCBCC----C---
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-----------cCCEEEEEccHHHHHHHHHHHHhcCCccee----eeEE
Confidence 3468999999999999999998888765421 367899999999999999988876532211 1111
Q ss_pred CCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHH
Q psy6409 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 921 (1832)
Q Consensus 842 g~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~ 921 (1832)
+ ........|+++||+.|...+... ..+.++++|||||||++.++++. +..++..+
T Consensus 71 ~-------~~~~~~~~i~~~t~~~l~~~~~~~-~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~-------------- 126 (305)
T d2bmfa2 71 R-------AEHTGREIVDLMCHATFTMRLLSP-IRVPNYNLIIMDEAHFTDPASIA--ARGYISTR-------------- 126 (305)
T ss_dssp ------------CCCSEEEEEHHHHHHHHTSS-SCCCCCSEEEEESTTCCSHHHHH--HHHHHHHH--------------
T ss_pred e-------ecccCccccccCCcHHHHHHHhcC-ccccceeEEEeeeeeecchhhHH--HHHHHHHh--------------
Confidence 1 112235789999999987766544 46788999999999988654321 11111111
Q ss_pred HHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCC
Q psy6409 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1001 (1832)
Q Consensus 922 ~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~ 1001 (1832)
......+++++|||+|.....+ ........... .......+...+ ..+. ...+
T Consensus 127 ---------~~~~~~~~v~~SAT~~~~~~~~---~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~-~~~~ 179 (305)
T d2bmfa2 127 ---------VEMGEAAGIFMTATPPGSRDPF---PQSNAPIMDEE-------------REIPERSWNSGH-EWVT-DFKG 179 (305)
T ss_dssp ---------HHHTSCEEEEECSSCTTCCCSS---CCCSSCEEEEE-------------CCCCCSCCSSCC-HHHH-SSCS
T ss_pred ---------hccccceEEEeecCCCcceeee---cccCCcceEEE-------------EeccHHHHHHHH-HHHH-hhCC
Confidence 1124578999999997643211 00111111110 000010011111 1122 3467
Q ss_pred CEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE--------
Q psy6409 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI-------- 1073 (1832)
Q Consensus 1002 ~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI-------- 1073 (1832)
++||||++++.|+.++..|...++.+..+||++.+..+ ..|++|..++||||+++++|+|++ +.+||
T Consensus 180 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~ 254 (305)
T d2bmfa2 180 KTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKP 254 (305)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceee
Confidence 89999999999999999999999999999999976544 468999999999999999999995 55554
Q ss_pred --EcCC----------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1074 --NYDM----------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1074 --~~d~----------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
+||. |.|..+|+||+|||||.|+.|.++.++....
T Consensus 255 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~~ 301 (305)
T d2bmfa2 255 VILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEP 301 (305)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSCC
T ss_pred eEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECCCC
Confidence 3443 5689999999999999999888888777653
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.96 E-value=1.5e-29 Score=301.56 Aligned_cols=275 Identities=19% Similarity=0.153 Sum_probs=187.5
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEEC
Q psy6409 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 1516 (1832)
Q Consensus 1437 il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~g 1516 (1832)
+..|+++|+.||||||||++|++|++..... .+.++||++||++||.|+++.++.++.... ....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-----------~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~----~~~~ 70 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-----------RGLRTLILAPTRVVAAEMEEALRGLPIRYQ----TPAI 70 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------HTCCEEEEESSHHHHHHHHHHTTTSCCBCC----C---
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-----------cCCEEEEEccHHHHHHHHHHHHhcCCccee----eeEE
Confidence 3478999999999999999998888764432 367899999999999999988876542211 1111
Q ss_pred CcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhh
Q psy6409 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 1596 (1832)
Q Consensus 1517 g~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~ 1596 (1832)
+ ........|+++||+.+...+.. ...+.++++|||||||++..+++. +..++..+
T Consensus 71 ~-------~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~-------------- 126 (305)
T d2bmfa2 71 R-------AEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASIA--ARGYISTR-------------- 126 (305)
T ss_dssp ------------CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHH--------------
T ss_pred e-------ecccCccccccCCcHHHHHHHhc-CccccceeEEEeeeeeecchhhHH--HHHHHHHh--------------
Confidence 1 11223568999999988766543 445788999999999988654321 11111111
Q ss_pred HHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCC
Q psy6409 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1676 (1832)
Q Consensus 1597 ~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~ 1676 (1832)
......+++++|||++.....+ ......... .........+...+ ..+ ....+
T Consensus 127 ---------~~~~~~~~v~~SAT~~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~-~~~~~ 179 (305)
T d2bmfa2 127 ---------VEMGEAAGIFMTATPPGSRDPF---PQSNAPIMD-------------EEREIPERSWNSGH-EWV-TDFKG 179 (305)
T ss_dssp ---------HHHTSCEEEEECSSCTTCCCSS---CCCSSCEEE-------------EECCCCCSCCSSCC-HHH-HSSCS
T ss_pred ---------hccccceEEEeecCCCcceeee---cccCCcceE-------------EEEeccHHHHHHHH-HHH-HhhCC
Confidence 0124478999999997643211 000111111 00001111111111 112 23467
Q ss_pred cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEE--------
Q psy6409 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI-------- 1748 (1832)
Q Consensus 1677 ~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI-------- 1748 (1832)
++||||++++.|+.++..|...++.+..+||++.+..+ ..|++|..+++|||+++++|+|++ ++.||
T Consensus 180 ~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~ 254 (305)
T d2bmfa2 180 KTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKP 254 (305)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCceee
Confidence 89999999999999999999999999999999866544 468999999999999999999995 55554
Q ss_pred --EeC----------CCCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1749 --NYD----------MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1749 --~~d----------~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
++| +|.|..+|+||+||+||.|+.|.+.+++...
T Consensus 255 ~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 255 VILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSC
T ss_pred eEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECCC
Confidence 233 4568999999999999999888887766544
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.1e-27 Score=250.43 Aligned_cols=160 Identities=29% Similarity=0.536 Sum_probs=142.5
Q ss_pred eEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1650 IEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1650 i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
|+|.+..+. ...|...|..++...+..++||||+|+.+|+.++..|...++.+..+||++++.+|..+++.|+.|+++|
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 467777775 4569999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcC
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~ 1808 (1832)
|||||++++|+|+|+|++|||||+|.+++.|+||+|||||.|+.|.|++|+++.|...+..+...+... ...+|.++.+
T Consensus 81 Lv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~-~~~ip~~~~~ 159 (162)
T d1fuka_ 81 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ-IEELPSDIAT 159 (162)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC-CEECCSCCTT
T ss_pred eeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCc-CCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888777654 5778887766
Q ss_pred CC
Q psy6409 1809 HP 1810 (1832)
Q Consensus 1809 h~ 1810 (1832)
..
T Consensus 160 l~ 161 (162)
T d1fuka_ 160 LL 161 (162)
T ss_dssp TT
T ss_pred hh
Confidence 44
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.3e-26 Score=247.59 Aligned_cols=162 Identities=31% Similarity=0.521 Sum_probs=151.2
Q ss_pred CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC
Q psy6409 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~ 1725 (1832)
....+.|++..+....|...|.+++...+..++||||+++.+|+.++..|...|+.+..+||++++.+|..+++.|++|+
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~ 82 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 82 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCc
Confidence 34678899999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChh
Q psy6409 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPE 1805 (1832)
Q Consensus 1726 ~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~ 1805 (1832)
++|||||+++++|+|+|++++|||||+|.++..|+||+||+||.|+.|.|++|+++.|...+..+.+.+... ...+|..
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~-~~~~p~~ 161 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE-IAAIPAT 161 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC-CEECCSS
T ss_pred cccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCC-CCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998876543 4677776
Q ss_pred hcC
Q psy6409 1806 LLN 1808 (1832)
Q Consensus 1806 L~~ 1808 (1832)
+.+
T Consensus 162 ~d~ 164 (171)
T d1s2ma2 162 IDK 164 (171)
T ss_dssp CCG
T ss_pred cch
Confidence 554
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.9e-26 Score=247.86 Aligned_cols=161 Identities=30% Similarity=0.569 Sum_probs=146.1
Q ss_pred CCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC
Q psy6409 1646 PTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g 1724 (1832)
...++.|++..+.. ..|...|.+++......++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g 83 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 83 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC
Confidence 45678898877765 56999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCCh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPP 1804 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~ 1804 (1832)
+++|||||+++++|||+|+|++|||||+|.+...|+||+||+||.|+.|.|++|+++.|...+..+.+.+... ...+|.
T Consensus 84 ~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~-i~e~p~ 162 (168)
T d2j0sa2 84 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ-IDEMPM 162 (168)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC-CEECCS
T ss_pred CccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998887776433 345554
Q ss_pred hhc
Q psy6409 1805 ELL 1807 (1832)
Q Consensus 1805 ~L~ 1807 (1832)
.+.
T Consensus 163 ~~~ 165 (168)
T d2j0sa2 163 NVA 165 (168)
T ss_dssp CCT
T ss_pred ChH
Confidence 443
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.6e-26 Score=245.56 Aligned_cols=148 Identities=30% Similarity=0.557 Sum_probs=134.0
Q ss_pred eEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 975 IEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 975 i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
+.|.++.+. .+.|...|.+++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+.|+.+|
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 467777775 4669999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|||||+++||+|+|+|++|||||+|.++..|+||+|||||.|..|.|++|++++|...+..+...+...
T Consensus 81 Lv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 149 (162)
T d1fuka_ 81 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 149 (162)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred eeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999999999999999998888888876544
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.6e-26 Score=245.78 Aligned_cols=152 Identities=31% Similarity=0.583 Sum_probs=142.1
Q ss_pred CCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC
Q psy6409 971 PTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G 1049 (1832)
...++.|+++.+.. ..|...|.+++......++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g 83 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 83 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC
Confidence 34678998888765 56999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1050 ~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
+++|||||++++||||+|+|++|||||+|.+...|+||+|||||.|+.|.+++|++++|...+..+.+.++.+
T Consensus 84 ~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~ 156 (168)
T d2j0sa2 84 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 156 (168)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred CccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999999999999999999999999999999999999999999998888888776543
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=4.7e-27 Score=263.22 Aligned_cols=140 Identities=21% Similarity=0.219 Sum_probs=116.8
Q ss_pred ccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHH
Q psy6409 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82 (1832)
Q Consensus 3 ~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~ 82 (1832)
..|||++|+|.|.+|||+++.|+|++++||||||||+||.+|++. ....+++++||++|+.|+.+
T Consensus 19 ~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---------------~~~~~~~v~P~~~L~~q~~~ 83 (206)
T d1oywa2 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------------LNGLTVVVSPLISLMKDQVD 83 (206)
T ss_dssp HTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------------SSSEEEEECSCHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh---------------ccCceEEeccchhhhhhHHH
Confidence 368999999999999999999999999999999999999999983 35579999999999999999
Q ss_pred HHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChH
Q psy6409 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 157 (1832)
Q Consensus 83 ~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~ 157 (1832)
.++.++...........++.............++|+++||.++.............+.+||+||||++.+||+..
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~ 158 (206)
T d1oywa2 84 QLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDF 158 (206)
T ss_dssp HHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCC
T ss_pred HHHhhcccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccch
Confidence 999997764333333333333344444455778999999999998877777788899999999999999998643
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=8.9e-26 Score=244.18 Aligned_cols=151 Identities=32% Similarity=0.534 Sum_probs=144.5
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 972 ~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
...+.|++..+....|...|.+++......++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++|..
T Consensus 4 l~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~ 83 (171)
T d1s2ma2 4 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKV 83 (171)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSS
T ss_pred ccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCcc
Confidence 45689999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
+|||||+++++|+|+|++++|||||+|.++..|+||+||+||.|..|.|++|++++|...+..+.+.++.+
T Consensus 84 ~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~ 154 (171)
T d1s2ma2 84 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 154 (171)
T ss_dssp SEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred ccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888876654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=2e-25 Score=237.43 Aligned_cols=149 Identities=35% Similarity=0.543 Sum_probs=141.0
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+++|.+..+...+|...|.+++.. .+.++||||++++.|+.++..|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~-~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 80 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CCeEEEEEEeChHHHHHHHHHHHcc-CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce
Confidence 4688999999999999999999875 456899999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|||||+++++|||+|+|++||+||+|.|+..|+||+||+||.|..|.+++|+++.|...+..+.+.++.+
T Consensus 81 ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 150 (155)
T d1hv8a2 81 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 150 (155)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred eeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998888877654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=4.4e-25 Score=234.83 Aligned_cols=147 Identities=35% Similarity=0.555 Sum_probs=139.1
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1648 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+|.|.+..+...+|...|..++.. ...++||||+++++|+.++..|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~-~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 80 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR 80 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred CCeEEEEEEeChHHHHHHHHHHHcc-CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce
Confidence 4688999999999999999999975 456899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
|||||+++++|||+|+|++||+||+|.|+.+|+||+||+||.|+.|.+++|+++.|...+..+.+.+.
T Consensus 81 ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~ 148 (155)
T d1hv8a2 81 ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMK 148 (155)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHT
T ss_pred eeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998888877664
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.2e-26 Score=265.71 Aligned_cols=144 Identities=24% Similarity=0.289 Sum_probs=115.9
Q ss_pred ccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHH
Q psy6409 5 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 84 (1832)
Q Consensus 5 ~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~ 84 (1832)
-||.+|+|+|+++||.++.|+|++++||||||||++|++|++... ..++++|||+||++|+.|+++++
T Consensus 39 ~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~------------~~~~rvliv~Pt~~La~Q~~~~l 106 (237)
T d1gkub1 39 KCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA------------LKGKRCYVIFPTSLLVIQAAETI 106 (237)
T ss_dssp TTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH------------TTSCCEEEEESCHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHH------------HhcCeEEEEeccHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999998543 24568999999999999999999
Q ss_pred HhcCCCccce----EEEEeCCcchHHHhHHhh--cCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHH
Q psy6409 85 NKFGTPLGIR----TVLVVGGLSREEQGFRLR--LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 158 (1832)
Q Consensus 85 ~~~~~~~~~~----~~~~~gg~~~~~q~~~l~--~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~ 158 (1832)
+++....++. .....|+.....+...+. .+++|||+||++|.+.+. .++++++|||||||+|++.+. .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~~----~~~~~~~vVvDE~d~~l~~~~--~ 180 (237)
T d1gkub1 107 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASK--N 180 (237)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCST----TSCCCSEEEESCHHHHHTSTH--H
T ss_pred HHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhhh----hcCCCCEEEEEChhhhhhccc--c
Confidence 9987665543 445556666665555554 568999999999876543 567899999999999998763 3
Q ss_pred HHHHHhhC
Q psy6409 159 VQKILEYM 166 (1832)
Q Consensus 159 ~~~i~~~~ 166 (1832)
+.+++..+
T Consensus 181 ~~~~~~~~ 188 (237)
T d1gkub1 181 VDKLLHLL 188 (237)
T ss_dssp HHHHHHHT
T ss_pred hhHHHHhc
Confidence 55554433
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5e-25 Score=237.07 Aligned_cols=156 Identities=33% Similarity=0.559 Sum_probs=140.9
Q ss_pred eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
+.|++..+.+.+|...|.+++......++||||+++.+++.|+..|...|+.+..+||+|++.+|..+++.|++|+++||
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iL 81 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 81 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceee
Confidence 57889999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcCCCCCCChhh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1806 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~~L 1806 (1832)
|||+++++|+|+|.+++||+||+|.++..|+||+||+||.|+.|.|++|+++. +...+..+.+.+.. +.+.+|+++
T Consensus 82 v~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~-~~~elp~~~ 158 (168)
T d1t5ia_ 82 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV-NISELPDEI 158 (168)
T ss_dssp EESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC-CEEECC---
T ss_pred eccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcC-CcccCCchh
Confidence 99999999999999999999999999999999999999999999999999886 45566666665543 346677765
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.2e-25 Score=243.70 Aligned_cols=135 Identities=25% Similarity=0.390 Sum_probs=127.0
Q ss_pred EcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccc
Q psy6409 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1060 (1832)
Q Consensus 981 ~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~ 1060 (1832)
.+...+|+..|+.++......++||||+|+..|+.++..|...|+.+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 11 v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~ 90 (200)
T d1oywa3 11 LMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 90 (200)
T ss_dssp EEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred EEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchh
Confidence 34556789999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
++|||+|+|++|||||+|.++.+|+||+|||||.|..|.|++|+++.|..++..+
T Consensus 91 ~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~ 145 (200)
T d1oywa3 91 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 145 (200)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999886666544
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.8e-24 Score=232.68 Aligned_cols=146 Identities=33% Similarity=0.562 Sum_probs=136.7
Q ss_pred eEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VL 1054 (1832)
+.|++..+.+++|...|.+++......++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|.++||
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iL 81 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 81 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceee
Confidence 67889999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHHh
Q psy6409 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMI 1120 (1832)
Q Consensus 1055 VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~ 1120 (1832)
|||+++++|+|+|++++||+||+|.++..|+||+|||||.|..|.|++|+++. +..++..+.+.+.
T Consensus 82 v~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 148 (168)
T d1t5ia_ 82 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 148 (168)
T ss_dssp EESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred eccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999885 4556666666543
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.3e-24 Score=237.67 Aligned_cols=135 Identities=25% Similarity=0.390 Sum_probs=126.5
Q ss_pred EcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc
Q psy6409 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735 (1832)
Q Consensus 1656 ~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl 1735 (1832)
......|...|+.++......++||||+|+..|+.|+..|...++.+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 11 v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~ 90 (200)
T d1oywa3 11 LMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 90 (200)
T ss_dssp EEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS
T ss_pred EEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchh
Confidence 34556788999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1736 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1736 ~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
++|||+|+|++|||||+|.|+.+|+||+|||||.|+.|.|++|+++.|..++..+
T Consensus 91 ~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~ 145 (200)
T d1oywa3 91 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 145 (200)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999876666543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=6.9e-24 Score=236.43 Aligned_cols=186 Identities=20% Similarity=0.297 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
+++.+...|++.||.+|+|+|.+|++.+++|+|+|++||||||||++|+++++..+. .++++|||+|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~------------~~~~vl~l~P~ 77 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------------KGGKSLYVVPL 77 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------------TTCCEEEEESS
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhh------------ccCcceeeccc
Confidence 667899999999999999999999999999999999999999999999999987652 25679999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~ 894 (1832)
++|+.|+.+.++++... ..++...+|+...... ....+.|+++||..+..++.+....+..+++||+||||++.+.
T Consensus 78 ~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~~---~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~ 153 (202)
T d2p6ra3 78 RALAGEKYESFKKWEKI-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (202)
T ss_dssp HHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhc-cccceeeccCcccccc---cccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhccc
Confidence 99999999999987654 4566666776553322 2236899999999998888887778889999999999999988
Q ss_pred CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 895 gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
.+...+..++..+. ......|++++|||+|+ .+.++ .|+..+
T Consensus 154 ~r~~~~~~~l~~i~----------------------~~~~~~~~l~lSATl~n-~~~~~-~~l~~~ 195 (202)
T d2p6ra3 154 KRGATLEILVTKMR----------------------RMNKALRVIGLSATAPN-VTEIA-EWLDAD 195 (202)
T ss_dssp TTHHHHHHHHHHHH----------------------HHCTTCEEEEEECCCTT-HHHHH-HHTTCE
T ss_pred ccchHHHHHHHHHH----------------------hcCCCCcEEEEcCCCCc-HHHHH-HHcCCC
Confidence 88877777766542 12245799999999987 46665 555443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=7.1e-24 Score=237.12 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=144.9
Q ss_pred cCcccCCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~-g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...+.++|++.+.+.|++. ||..++|+|.+||+.+++|+|+++++|||||||++|++|++. ...
T Consensus 2 ~~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~---------------~~~ 66 (206)
T d1oywa2 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------------LNG 66 (206)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------------SSS
T ss_pred CchhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhh---------------ccC
Confidence 3467788999999999886 999999999999999999999999999999999999999973 256
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH----HHHHHhcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE----QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~----~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
++++++|+++|+.|+...++.++.. .....+...... .........+|+++||+.+.............+.+
T Consensus 67 ~~~~v~P~~~L~~q~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~ 142 (206)
T d1oywa2 67 LTVVVSPLISLMKDQVDQLQANGVA----AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVL 142 (206)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCC----EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEE
T ss_pred ceEEeccchhhhhhHHHHHHhhccc----ccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeee
Confidence 7999999999999999999887443 334444333222 12223446899999999987665555667888999
Q ss_pred EEEecchhhhcCCCh--HHHHH---HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH-HHHH-
Q psy6409 883 IVLDEADRMIDMGFE--PDVQK---ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER-LARS- 955 (1832)
Q Consensus 883 lViDEaH~l~d~gf~--~~i~~---Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~-~~~~- 955 (1832)
||+||||++.++++. ..+.. +...+ +..|+++||||+|+.+.. +.+.
T Consensus 143 lviDEaH~~~~~~~~~~~~~~~~~~l~~~~--------------------------~~~~ii~lSATl~~~v~~di~~~L 196 (206)
T d1oywa2 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRF--------------------------PTLPFMALTATADDTTRQDIVRLL 196 (206)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHHC--------------------------TTSCEEEEESCCCHHHHHHHHHHH
T ss_pred eeeeeeeeeeccccchHHHHHHHHHHHHhC--------------------------CCCceEEEEeCCCHHHHHHHHHHc
Confidence 999999999988743 22211 11111 347899999999998754 4544
Q ss_pred hcCCCc
Q psy6409 956 YLRRPA 961 (1832)
Q Consensus 956 ~l~~p~ 961 (1832)
.+.+|.
T Consensus 197 ~l~~p~ 202 (206)
T d1oywa2 197 GLNDPL 202 (206)
T ss_dssp TCCSCE
T ss_pred CCCCCc
Confidence 378885
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=7.7e-23 Score=227.88 Aligned_cols=186 Identities=19% Similarity=0.289 Sum_probs=148.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
+++.+...|++.||.+|+|+|.+|++.+++|+|++++||||||||++|.++++..+.. ++++|||+|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~------------~~~vl~l~P~ 77 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GGKSLYVVPL 77 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TCCEEEEESS
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc------------cCcceeeccc
Confidence 6788899999999999999999999999999999999999999999999999876533 5579999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcC
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~ 1569 (1832)
++|+.|+.+.+++++.. ..++...+|+...... ....++|+++||..+..++.+....+..+++||+||||++.+.
T Consensus 78 ~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~~---~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~ 153 (202)
T d2p6ra3 78 RALAGEKYESFKKWEKI-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE 153 (202)
T ss_dssp HHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhc-cccceeeccCcccccc---cccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhccc
Confidence 99999999999988654 3556666676554332 2236889999999999999888888899999999999999888
Q ss_pred CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1570 gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
.+...+..++..+. ......|++++|||+++. +.+. .|+..+
T Consensus 154 ~r~~~~~~~l~~i~----------------------~~~~~~~~l~lSATl~n~-~~~~-~~l~~~ 195 (202)
T d2p6ra3 154 KRGATLEILVTKMR----------------------RMNKALRVIGLSATAPNV-TEIA-EWLDAD 195 (202)
T ss_dssp TTHHHHHHHHHHHH----------------------HHCTTCEEEEEECCCTTH-HHHH-HHTTCE
T ss_pred ccchHHHHHHHHHH----------------------hcCCCCcEEEEcCCCCcH-HHHH-HHcCCC
Confidence 87777766665542 112457999999999874 5554 566443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=2.4e-23 Score=238.02 Aligned_cols=192 Identities=23% Similarity=0.238 Sum_probs=135.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
.|.+..+.+.+.+ +.+.+|.+|+++|+++++.++.|+|++++||||||||++|++|++... ..+.++
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~------------~~~~rv 89 (237)
T d1gkub1 23 LFPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLA------------LKGKRC 89 (237)
T ss_dssp CCTTHHHHHHHHH-HHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHH------------TTSCCE
T ss_pred cCccchhHHHHHH-HHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHH------------HhcCeE
Confidence 3444344444444 455689999999999999999999999999999999999999998654 236789
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeE----EEEEcCCchHHHHHHH--hcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRT----VLVVGGLSREEQGFRL--RLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v----~~~~Gg~~~~~~~~~l--~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
|||+||++|+.|+++++++++..+++.+ ....++.....+...+ ..+++|+|+||++|.+ ....+.++++
T Consensus 90 liv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~----~~~~~~~~~~ 165 (237)
T d1gkub1 90 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK----HYRELGHFDF 165 (237)
T ss_dssp EEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH----CSTTSCCCSE
T ss_pred EEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHH----hhhhcCCCCE
Confidence 9999999999999999999988776653 3334444433333332 3458999999998754 3346788999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
|||||||.|++.+. .+..++..+.... .+...........|++++|||+|+....
T Consensus 166 vVvDE~d~~l~~~~--~~~~~~~~~g~~~------------~~~~~~~~~~~~~~~i~~SAT~~~~~~~ 220 (237)
T d1gkub1 166 IFVDDVDAILKASK--NVDKLLHLLGFHY------------DLKTKSWVGEARGCLMVSTATAKKGKKA 220 (237)
T ss_dssp EEESCHHHHHTSTH--HHHHHHHHTTEEE------------ETTTTEEEECCSSEEEECCCCSCCCTTH
T ss_pred EEEEChhhhhhccc--chhHHHHhcCChH------------HHHHHHhhCCCCCeEEEEeCCCCcccHH
Confidence 99999999987542 3333433321000 0001112233457899999999876543
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=5.6e-22 Score=210.31 Aligned_cols=124 Identities=25% Similarity=0.310 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEccccccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~G 1738 (1832)
.....|++.+.. ..+.++||||+|+++|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 15 ~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~G 94 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 94 (174)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeee
Confidence 334445544433 256799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCC-----CHHHHHHHhcccccCCCccEEEEEeeCCChh
Q psy6409 1739 IDIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1739 IDip~v~~VI~~d~P~-----s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~ 1785 (1832)
||+|+|++||+||+|. +.++|+||+|||||.|+ |.++++.......
T Consensus 95 iDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~ 145 (174)
T d1c4oa2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEA 145 (174)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHH
Confidence 9999999999999665 66899999999999775 8888887765443
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=6.8e-22 Score=209.65 Aligned_cols=128 Identities=24% Similarity=0.297 Sum_probs=110.6
Q ss_pred HHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 987 KRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 987 k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
.+..|++.+.. ..+.++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 16 qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~Gi 95 (174)
T d1c4oa2 16 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 95 (174)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeec
Confidence 34444444432 3577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCCCC-----CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1065 DIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1065 Dip~v~~VI~~d~p~-----s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
|+|+|++||+||+|. +..+|+||+|||||.|+ |.+++++......+...+
T Consensus 96 Dip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 96 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHHHH
Confidence 999999999999766 56889999999999876 888888876654444433
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.86 E-value=7e-22 Score=213.29 Aligned_cols=124 Identities=23% Similarity=0.335 Sum_probs=106.5
Q ss_pred HHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 987 KRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 987 k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
....|+..+.. ..+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||++++|||
T Consensus 16 qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGi 95 (181)
T d1t5la2 16 QIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGL 95 (181)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSC
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccC
Confidence 33444443332 2466899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCCCC-----CHhHHHHHhcccccCCCCcEEEEEecCCCchH
Q psy6409 1065 DIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111 (1832)
Q Consensus 1065 Dip~v~~VI~~d~p~-----s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~ 1111 (1832)
|+|+|++|||||+|. +..+|+||+|||||.|. |.++.++......+
T Consensus 96 Dip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~~~~ 146 (181)
T d1t5la2 96 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADTITKSM 146 (181)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHH
T ss_pred CCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecchhhHHH
Confidence 999999999999996 68999999999999986 55555555554333
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.86 E-value=1e-21 Score=212.03 Aligned_cols=122 Identities=24% Similarity=0.333 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEccccccc
Q psy6409 1661 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~G 1738 (1832)
.+...|+..+... .+.++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rG 94 (181)
T d1t5la2 15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 94 (181)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSS
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHcc
Confidence 3344444444332 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCCCC-----CHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1739 IDIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1739 IDip~v~~VI~~d~P~-----s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
||+|+|++|||||+|. +..+|+||+|||||.|. |.+++++....
T Consensus 95 iDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~ 143 (181)
T d1t5la2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADTIT 143 (181)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCC
T ss_pred CCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecchhh
Confidence 9999999999999996 78999999999999885 44444444443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.81 E-value=1.7e-19 Score=200.02 Aligned_cols=169 Identities=21% Similarity=0.216 Sum_probs=130.5
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
+-+|+++|.+++..+. ++|+|++||||||||++|++++...+.. .+.++||++|+++|+.|+.+.+.+
T Consensus 7 ~~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~-----------~~~~il~i~P~~~L~~q~~~~~~~ 74 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRR 74 (200)
T ss_dssp HHCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh-----------cCCcEEEEcCchHHHHHHHHHHHH
Confidence 3579999999999886 5689999999999999999988765432 355799999999999999999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
+....+.++..+.++......... ....+|+++||+.+...+....+.++.+++||+||||++........+...+.
T Consensus 75 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~-- 151 (200)
T d1wp9a1 75 LFNLPPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYK-- 151 (200)
T ss_dssp HBCSCGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHH--
T ss_pred hhcccccceeeeecccchhHHHHh-hhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHH--
Confidence 988888888888887776544333 33578999999999999988888889999999999998775432221111111
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~ 954 (1832)
......+++++|||++.....+..
T Consensus 152 -----------------------~~~~~~~~l~~SATp~~~~~~~~~ 175 (200)
T d1wp9a1 152 -----------------------RQAKNPLVIGLTASPGSTPEKIME 175 (200)
T ss_dssp -----------------------HHCSSCCEEEEESCSCSSHHHHHH
T ss_pred -----------------------hcCCCCcEEEEEecCCCcHHHHHH
Confidence 112346899999998665554443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.81 E-value=5.2e-21 Score=197.02 Aligned_cols=102 Identities=31% Similarity=0.401 Sum_probs=92.9
Q ss_pred hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeC
Q psy6409 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD 1751 (1832)
Q Consensus 1672 ~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d 1751 (1832)
....+++||||+|++.|+.|+..|...|+.+..+||+|++. .|++|+.+|||||+++++||| |++++|||++
T Consensus 32 ~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~ 103 (138)
T d1jr6a_ 32 VIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCN 103 (138)
T ss_dssp HHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECS
T ss_pred hcCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEE
Confidence 34567899999999999999999999999999999999854 578999999999999999999 9999999865
Q ss_pred ----CCCCHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1752 ----MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1752 ----~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|.++++|+||+||||| |++|. ++|+++.+
T Consensus 104 ~~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 104 TSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp EETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred ecCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77888765
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.80 E-value=4.8e-21 Score=197.29 Aligned_cols=101 Identities=32% Similarity=0.412 Sum_probs=92.6
Q ss_pred CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcC-
Q psy6409 998 GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD- 1076 (1832)
Q Consensus 998 ~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d- 1076 (1832)
...+++||||+|++.|+.|++.|...|+.+..+||+|++. .|++|+.+||||||++++||| |+|++||||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~ 104 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDSVIDCNT 104 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSEEEECSE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccceEEEEEe
Confidence 4567899999999999999999999999999999999854 478999999999999999999 9999999855
Q ss_pred ---CCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1077 ---MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1077 ---~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
+|.++++|+||+||||| |+.|. ++|+++.|
T Consensus 105 ~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 105 SDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp ETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred cCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77888876
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=2.4e-19 Score=198.91 Aligned_cols=167 Identities=22% Similarity=0.213 Sum_probs=129.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
-+|+++|.+++..+. ++|+|+++|||||||+++++++...+.. .+.++||++|+++|+.|+++.+.++
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~-----------~~~~il~i~P~~~L~~q~~~~~~~~ 75 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRL 75 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh-----------cCCcEEEEcCchHHHHHHHHHHHHh
Confidence 379999999999876 5689999999999999999888766543 3557999999999999999999999
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
+...+.++..+.++........ ....++|+|+||+.+...+....+.+.++++||+||||++........+...+..
T Consensus 76 ~~~~~~~v~~~~~~~~~~~~~~-~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~-- 152 (200)
T d1wp9a1 76 FNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR-- 152 (200)
T ss_dssp BCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH--
T ss_pred hcccccceeeeecccchhHHHH-hhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHh--
Confidence 8888888888888777654433 3335789999999999999988888999999999999987654322111111111
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
.....+++++|||++.....+.
T Consensus 153 -----------------------~~~~~~~l~~SATp~~~~~~~~ 174 (200)
T d1wp9a1 153 -----------------------QAKNPLVIGLTASPGSTPEKIM 174 (200)
T ss_dssp -----------------------HCSSCCEEEEESCSCSSHHHHH
T ss_pred -----------------------cCCCCcEEEEEecCCCcHHHHH
Confidence 1234689999999876555443
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=1.5e-18 Score=191.38 Aligned_cols=120 Identities=23% Similarity=0.429 Sum_probs=103.5
Q ss_pred HHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc------------------------------CCcEEEEcCCCCHHHH
Q psy6409 1665 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------------------------GYNACTLHGGKGQEQR 1714 (1832)
Q Consensus 1665 ~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~------------------------------~~~v~~lHg~ls~~~R 1714 (1832)
.+.+.+.. +.++||||+|++.|+.+|..|... ..++++|||+|++.+|
T Consensus 32 l~~~~i~~--~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r 109 (201)
T d2p6ra4 32 LVEECVAE--NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 109 (201)
T ss_dssp HHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHH
T ss_pred HHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhH
Confidence 34444543 578999999999999999887642 2458999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE-------eCCCCCHHHHHHHhcccccCCC--ccEEEEEeeCCChh
Q psy6409 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN-------YDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1715 ~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~-------~d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~d~~ 1785 (1832)
..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.|. .|.+++++.+.+..
T Consensus 110 ~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~ 189 (201)
T d2p6ra4 110 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189 (201)
T ss_dssp HHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChH
Confidence 99999999999999999999999999999999996 6778899999999999999884 68999888887654
Q ss_pred H
Q psy6409 1786 L 1786 (1832)
Q Consensus 1786 ~ 1786 (1832)
.
T Consensus 190 ~ 190 (201)
T d2p6ra4 190 I 190 (201)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=1.1e-17 Score=196.24 Aligned_cols=123 Identities=31% Similarity=0.475 Sum_probs=107.0
Q ss_pred hHHHHHHHHH----HhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcC--------CCCHHHHHHHHHHhhCCCCcE
Q psy6409 1661 DKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG--------GKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1661 ~k~~~l~~~l----~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg--------~ls~~~R~~il~~F~~g~~~V 1728 (1832)
.|...+.+++ ....+.++||||+++.+|+.++..|...++.+..+|| ++++.+|..+++.|++|+++|
T Consensus 143 pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~v 222 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 222 (286)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcE
Confidence 3455554444 4567789999999999999999999999999998876 566678999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
||||+++++|||+|+|++||+||+|+|+..|+||+||+||.+ .|.+++|++++..
T Consensus 223 Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~~ 277 (286)
T d1wp9a2 223 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTR 277 (286)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTSH
T ss_pred EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999964 7999999998753
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=1.1e-17 Score=196.24 Aligned_cols=122 Identities=31% Similarity=0.479 Sum_probs=107.1
Q ss_pred hHHHHHHHHH----HcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcC--------CCCHHHHHHHHHHHhCCCCcE
Q psy6409 986 DKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG--------GKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 986 ~k~~~L~~~l----~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg--------~~~~~~R~~il~~F~~G~~~V 1053 (1832)
.|...|.++| ....+.++||||+++..++.+++.|...++++..+|| ++++.+|..+++.|++|+++|
T Consensus 143 pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~v 222 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 222 (286)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcE
Confidence 4555555554 3467789999999999999999999999999998876 567778999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
||||+++++|||+|+|++||+||+|.++..|+||+|||||.+ .|.+++|++++.
T Consensus 223 Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~ 276 (286)
T d1wp9a2 223 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276 (286)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTS
T ss_pred EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCC
Confidence 999999999999999999999999999999999999999975 699999999875
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=1.3e-17 Score=183.92 Aligned_cols=119 Identities=24% Similarity=0.421 Sum_probs=102.4
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc------------------------------CCcEEEEcCCCCHHH
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------------------------GYNACTLHGGKGQEQ 1038 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------------------------g~~v~~lhg~~~~~~ 1038 (1832)
..+.+++. .+.++||||+|++.|+.+|..|... ..++++|||+|++.+
T Consensus 31 ~l~~~~i~--~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~ 108 (201)
T d2p6ra4 31 ELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 108 (201)
T ss_dssp HHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHH--cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhh
Confidence 33445555 3578999999999999998887542 134889999999999
Q ss_pred HHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE-------cCCCCCHhHHHHHhcccccCCC--CcEEEEEecCCCc
Q psy6409 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN-------YDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDS 1109 (1832)
Q Consensus 1039 R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~-------~d~p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~ 1109 (1832)
|..+++.|++|.++|||||+++++|||+|++++||+ ++.|.+..+|+||+|||||.|. .|.+++++.+.+.
T Consensus 109 r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~ 188 (201)
T d2p6ra4 109 RRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 188 (201)
T ss_dssp HHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCCh
Confidence 999999999999999999999999999999999996 6778899999999999999985 5889988877653
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.64 E-value=9.2e-17 Score=180.51 Aligned_cols=144 Identities=22% Similarity=0.207 Sum_probs=110.9
Q ss_pred CCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHH----------HHHHHHHhCCCCcEEEecccccc---cCCC
Q psy6409 1000 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR----------ELALNSLKGGSKDILVATDVAGR---GIDI 1066 (1832)
Q Consensus 1000 ~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R----------~~il~~F~~G~~~VLVaTdv~~r---GlDi 1066 (1832)
++++||||++++.|+.++..|...|+++..+||+++++.| ..+++.|..|++++||+|+++++ |+|+
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDi 115 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSL 115 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCC
Confidence 5689999999999999999999999999999999999887 46889999999999999999999 6788
Q ss_pred cCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHHhcCCcccccccccccccccccCCchh
Q psy6409 1067 KDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHL 1145 (1832)
Q Consensus 1067 p~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~ 1145 (1832)
+.+.+||+|++|.|+++|+||+||||| |+.|....++... .+.++..+.= ....+.++.|........
T Consensus 116 d~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~t~p~~~l~s~al----------~~~~~ag~~w~~~~~~~~ 184 (299)
T d1a1va2 116 DPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMFDSSVL----------CECYDAGCAWYELTPAET 184 (299)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSCCBCSCBCCHHHH----------HHHHHHHHHTSCCCHHHH
T ss_pred CcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecCCCHHHHHHHHHH----------HHHHHhccchhcCChHHH
Confidence 888899999999999999999999999 8889876555544 2223322210 011234567876655554
Q ss_pred HHHHHHhhh
Q psy6409 1146 FYDLKQMMI 1154 (1832)
Q Consensus 1146 ~~~l~~~l~ 1154 (1832)
...|+.+..
T Consensus 185 ~~~~~~~~~ 193 (299)
T d1a1va2 185 TVRLRAYMN 193 (299)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 455555543
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.62 E-value=9.3e-17 Score=180.51 Aligned_cols=107 Identities=25% Similarity=0.273 Sum_probs=94.9
Q ss_pred CCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH----------HHHHHHhhCCCCcEEEEcccccc---cCCC
Q psy6409 1675 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR----------ELALNSLKGGSKDILVATDVAGR---GIDI 1741 (1832)
Q Consensus 1675 ~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R----------~~il~~F~~g~~~VLVATdvl~~---GIDi 1741 (1832)
.+++||||+|+..|+.|+..|...|+.+..+||+++++.| ..+++.|++|++++||+|+++++ |+|+
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDi 115 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSL 115 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCC
Confidence 5789999999999999999999999999999999999876 46789999999999999999999 6788
Q ss_pred CCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1742 KDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1742 p~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+.+.+||+|++|.|+++|+||+||||| |+.|....+....
T Consensus 116 d~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~t 155 (299)
T d1a1va2 116 DPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155 (299)
T ss_dssp SSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSCC
T ss_pred CcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecCC
Confidence 888899999999999999999999999 9999877655543
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.61 E-value=5.2e-18 Score=194.41 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec----cc
Q psy6409 984 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DV 1059 (1832)
Q Consensus 984 ~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT----dv 1059 (1832)
.+.++..|..++... +.++||||++++.|+.++++|... +||++++.+|..+++.|++|+++||||| ++
T Consensus 10 ~~~~~~~l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 10 NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred CchHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 466778888888754 467999999999999999999753 8999999999999999999999999999 88
Q ss_pred ccccCCCcC-cCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHH
Q psy6409 1060 AGRGIDIKD-VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113 (1832)
Q Consensus 1060 ~~rGlDip~-v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~ 1113 (1832)
+++|||+|+ |++|||||+|. |.||+||+||+|..|.+++++...+...+.
T Consensus 83 ~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~ 133 (248)
T d1gkub2 83 LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIE 133 (248)
T ss_dssp --CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHH
T ss_pred hhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHH
Confidence 999999996 99999999994 899999999999999999888887754443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=7.8e-18 Score=192.90 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=102.2
Q ss_pred hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc----cc
Q psy6409 1659 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DV 1734 (1832)
Q Consensus 1659 ~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT----dv 1734 (1832)
...+...|..+++.. +.++||||++++.|+.|+..|... +||++++.+|..+++.|++|+++||||| ++
T Consensus 10 ~~~~~~~l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 10 NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred CchHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 566778888888754 467999999999999999999753 7999999999999999999999999999 78
Q ss_pred ccccCCCCC-CCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHH
Q psy6409 1735 AGRGIDIKD-VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787 (1832)
Q Consensus 1735 l~~GIDip~-v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~ 1787 (1832)
+++|||+|+ |++|||||+|+ |.||+||+||+|..|.+++++...+....
T Consensus 83 ~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~ 132 (248)
T d1gkub2 83 LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEI 132 (248)
T ss_dssp --CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHH
T ss_pred hhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHH
Confidence 999999996 99999999994 89999999999999999998887765544
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1.2e-16 Score=174.66 Aligned_cols=130 Identities=20% Similarity=0.301 Sum_probs=100.9
Q ss_pred HHHHHHHHHHc--CCCCCEEEEEcccchHHH--------HHHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 987 KRKKLMEVLNR--GVKKPVIIFVNQKKGADV--------LAKGLEKL---GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 987 k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~--------l~~~L~~~---g~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
+...+.+.+.. ..+.++.+.|+..+..+. .++.|... ++.+..+||.|++++|+.++..|++|+++|
T Consensus 14 ~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~i 93 (206)
T d1gm5a4 14 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 93 (206)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEE
Confidence 44555555543 255688888887654443 33344322 567889999999999999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
||||+++++|||+|++++||++++|. +.++|.|..||+||.|..|.|++++.+.+..-...++
T Consensus 94 LVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~ 157 (206)
T d1gm5a4 94 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 157 (206)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHH
T ss_pred EEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhh
Confidence 99999999999999999999999998 7888888899999999999999999876654444443
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1.2e-16 Score=174.47 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEECchhHHH--------HHHHHHHHc---CCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1661 DKRKKLMEVLNRG--VKKPVIIFVNQKKGAD--------VLAKGLEKL---GYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~--------~l~~~L~~~---~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
++...+.+.+... .+.++.++||.++..+ ..+..|... ++.+..+||.|++++|+.+++.|++|+++
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 3445566665542 5668888898765443 333444332 56788999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|||||+++++|||+|++++||+++.|. ..+.|.|..||+||.|..|.|++++.+.+..-...++.+
T Consensus 93 iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~~~ 159 (206)
T d1gm5a4 93 ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFF 159 (206)
T ss_dssp BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHH
T ss_pred EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhhhc
Confidence 999999999999999999999999998 688888889999999999999999988766555555444
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.58 E-value=3.5e-16 Score=173.05 Aligned_cols=117 Identities=25% Similarity=0.385 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
..|...|.+++..+...++||||++...++.|++.| ++..+||+++..+|..+++.|++|+++|||||+++++||
T Consensus 78 ~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 357888999999888889999999999999998776 355689999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc---cEEEEEeeC
Q psy6409 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE---GLAVSFCTK 1781 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~---G~ai~~~~~ 1781 (1832)
|+|.+++||++++|+|...|+||+||++|.|+. ...+.|+..
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 999999999999999999999999999998753 344555554
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.57 E-value=4e-16 Score=172.50 Aligned_cols=118 Identities=25% Similarity=0.382 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 985 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 985 ~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
..|...|.+++....+.++||||++...++.+++.| .+..+||++++.+|..+++.|++|+++|||||+++++||
T Consensus 78 ~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 467888999999888889999999999999998776 355689999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC---cEEEEEecCC
Q psy6409 1065 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE---GLAVSFCTKD 1107 (1832)
Q Consensus 1065 Dip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~---G~ai~~~~~~ 1107 (1832)
|+|.+++||+|++|.|+..|+||+||++|.|+. ...+.|++.+
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~ 198 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 198 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCC
Confidence 999999999999999999999999999999864 3455566543
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.56 E-value=2.6e-15 Score=174.22 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=113.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+++|.+|+..++..+..++++|||+|||+++...+..+... ...++|||||+++|+.|+++.+.+++
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~-----------~~~k~Liivp~~~Lv~Q~~~~f~~~~ 181 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhc-----------ccceEEEEEcCchhHHHHHHHHHHhh
Confidence 7999999999999998999999999999999876555333222 24579999999999999999999987
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~ 1584 (1832)
......+..+.+|...... .....+|+|+|++.+.... ...++++++||+||||++. .+.+..|+..+.
T Consensus 182 ~~~~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~---~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~- 250 (282)
T d1rifa_ 182 LFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLN- 250 (282)
T ss_dssp SCCGGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCT-
T ss_pred ccccccceeecceeccccc---ccccceEEEEeeehhhhhc---ccccCCCCEEEEECCCCCC----chhHHHHHHhcc-
Confidence 6555556666666554322 2235789999998765432 2346789999999999874 455666655442
Q ss_pred CCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH
Q psy6409 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 1623 (1832)
Q Consensus 1585 ~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~ 1623 (1832)
.....++||||++..
T Consensus 251 ------------------------~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 251 ------------------------NCMFKFGLSGSLRDG 265 (282)
T ss_dssp ------------------------TCCEEEEECSSCCTT
T ss_pred ------------------------CCCeEEEEEeecCCC
Confidence 112358999998654
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=4.7e-14 Score=156.63 Aligned_cols=138 Identities=24% Similarity=0.218 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHc----C--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
....+.+.+.=-..+|+-|..++..+.+ + .+.+++|.||||||.+|+..++..+ ..|.++++
T Consensus 42 ~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~------------~~g~qv~~ 109 (233)
T d2eyqa3 42 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV------------DNHKQVAV 109 (233)
T ss_dssp HHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH------------TTTCEEEE
T ss_pred HHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHH------------HcCCceEE
Confidence 3555555443334899999999988764 2 3689999999999999999998765 35889999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||..||.|.+..|+++...+++.+..++|+.+..+.. ..+..| .+|||||-..+ ...+.+.++.+||||
T Consensus 110 l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l-----~~~~~f~~LgLiIiD 184 (233)
T d2eyqa3 110 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVD 184 (233)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEE
T ss_pred EccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhh-----ccCCccccccceeee
Confidence 999999999999999999999999999999998865543 334444 79999995433 345678899999999
Q ss_pred cchhh
Q psy6409 887 EADRM 891 (1832)
Q Consensus 887 EaH~l 891 (1832)
|-|+.
T Consensus 185 EeH~f 189 (233)
T d2eyqa3 185 EEHRF 189 (233)
T ss_dssp SGGGS
T ss_pred chhhh
Confidence 99963
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.54 E-value=3.8e-15 Score=172.82 Aligned_cols=138 Identities=20% Similarity=0.240 Sum_probs=103.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
-+|+++|.+|+..++.++..++++|||+|||+++...+..+.. ....++|||||+++|+.|+.+.|.++
T Consensus 112 ~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~-----------~~~~k~Liivp~~~Lv~Q~~~~f~~~ 180 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-----------NYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-----------HCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhh-----------cccceEEEEEcCchhHHHHHHHHHHh
Confidence 3699999999999999999999999999999987654432221 12457999999999999999999998
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
+......+..+.+|...... ......|+|+|++.+... ....++++++||+||||++. .+.+..|+..+
T Consensus 181 ~~~~~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~---~~~~~~~f~~VIvDEaH~~~----a~~~~~il~~~ 249 (282)
T d1rifa_ 181 RLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGL 249 (282)
T ss_dssp TSCCGGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTC
T ss_pred hccccccceeecceeccccc---ccccceEEEEeeehhhhh---cccccCCCCEEEEECCCCCC----chhHHHHHHhc
Confidence 76555566677777653221 223578999999887433 22356789999999999864 34555665544
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=2.8e-14 Score=161.41 Aligned_cols=137 Identities=23% Similarity=0.254 Sum_probs=111.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHc----C--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~----g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
.....++.+.| ++|+-|.+|+..+.. + .+-+++|.||||||.+|+..++..+. .|.+++++
T Consensus 72 l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~------------~g~q~~~m 138 (264)
T d1gm5a3 72 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------------AGFQTAFM 138 (264)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------------HTSCEEEE
T ss_pred HHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHh------------cccceeEE
Confidence 34455566777 799999999999864 2 36799999999999999999987763 37789999
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+||..||.|.+..++++...+|+.+..++|+.+..+.. ..+.. .++|||||-.-+ ...+.+.++.+|||||
T Consensus 139 ~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~-----~~~~~f~~LglviiDE 213 (264)
T d1gm5a3 139 VPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QEDVHFKNLGLVIIDE 213 (264)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHCCCCSCCCEEEEES
T ss_pred eehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHh-----cCCCCccccceeeecc
Confidence 99999999999999999999999999999998865443 33333 489999995433 3445678999999999
Q ss_pred chhhh
Q psy6409 888 ADRMI 892 (1832)
Q Consensus 888 aH~l~ 892 (1832)
-|+..
T Consensus 214 qH~fg 218 (264)
T d1gm5a3 214 QHRFG 218 (264)
T ss_dssp CCCC-
T ss_pred ccccc
Confidence 99653
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=4.5e-14 Score=159.74 Aligned_cols=169 Identities=24% Similarity=0.229 Sum_probs=128.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhc----C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~----g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
......++.+.| .+|+-|.+|+..+.. + .+.++++.||||||.+|+.+++..+.. |..|++
T Consensus 71 ~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~------------g~q~~~ 137 (264)
T d1gm5a3 71 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAF 137 (264)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEE
T ss_pred HHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc------------ccceeE
Confidence 445566677888 899999999998863 2 468999999999999999999877654 778999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++||..||.|.+..+++++..+|+.+..++|+.+..+... .+.+ .++|||||-.-+ ...+.+.++++||||
T Consensus 138 m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~-----~~~~~f~~LglviiD 212 (264)
T d1gm5a3 138 MVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALI-----QEDVHFKNLGLVIID 212 (264)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHH-----HHCCCCSCCCEEEEE
T ss_pred EeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHh-----cCCCCccccceeeec
Confidence 9999999999999999999999999999999988754332 3333 489999996433 334567899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
|-|+..-... . .+......+.++++|||+.+.-..++
T Consensus 213 EqH~fgv~Qr----------~--------------------~l~~~~~~~~~l~~SATPiprtl~~~ 249 (264)
T d1gm5a3 213 EQHRFGVKQR----------E--------------------ALMNKGKMVDTLVMSATPIPRSMALA 249 (264)
T ss_dssp SCCCC---------------C--------------------CCCSSSSCCCEEEEESSCCCHHHHHH
T ss_pred cccccchhhH----------H--------------------HHHHhCcCCCEEEEECCCCHHHHHHH
Confidence 9997632110 0 01122345679999999877654444
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2e-13 Score=151.56 Aligned_cols=170 Identities=22% Similarity=0.241 Sum_probs=128.0
Q ss_pred HHHHHH-HHHcCCCCCcHHHHHHHHHHhc----C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEE
Q psy6409 1412 TEILEI-IEKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484 (1832)
Q Consensus 1412 ~~ll~~-l~~~g~~~ptpiQ~~ai~~il~----g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vL 1484 (1832)
....+. ...+.| .+|+-|.+++..+.. + .+.++++.||||||.+|+.+++..+. .|..|+
T Consensus 42 ~~~~~~~~~~lP~-~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~------------~g~qv~ 108 (233)
T d2eyqa3 42 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NHKQVA 108 (233)
T ss_dssp HHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TTCEEE
T ss_pred HHHHHhhhhcccc-ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH------------cCCceE
Confidence 344333 344566 899999999988763 2 47899999999999999999987663 488999
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1485 iLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+|+||..|+.|.+..+++++..+++++..++|..+..... ..+.. ..+|||+|--.+ ...+.+.++++|||
T Consensus 109 ~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l-----~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 109 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIV 183 (233)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEE
T ss_pred EEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhh-----ccCCccccccceee
Confidence 9999999999999999999999999999999998865532 23433 479999995433 34567889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~ 1629 (1832)
||-|+. |+. +-+.+.. ......++++|||+.+....++.
T Consensus 184 DEeH~f---g~k-Q~~~l~~--------------------------~~~~~~~l~~SATPiprtl~~~~ 222 (233)
T d2eyqa3 184 DEEHRF---GVR-HKERIKA--------------------------MRANVDILTLTATPIPRTLNMAM 222 (233)
T ss_dssp ESGGGS---CHH-HHHHHHH--------------------------HHTTSEEEEEESSCCCHHHHHHH
T ss_pred echhhh---hhH-HHHHHHh--------------------------hCCCCCEEEEecchhHHHHHHHH
Confidence 999964 222 2222211 12346799999999887654443
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=7.7e-14 Score=150.27 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=102.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcC
Q psy6409 999 VKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD 1076 (1832)
Q Consensus 999 ~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d 1076 (1832)
.++++.+.|+..+..+.+++.|.+. ++.+..+||.|++++++.++..|.+|+++|||||.+.+.|||+|+++++|.++
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~ 109 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 109 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEec
Confidence 6788999999999999999999875 78899999999999999999999999999999999999999999999999999
Q ss_pred CCC-CHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1077 MAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1077 ~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
... ...++.|..||+||.+..|.|++++.+.
T Consensus 110 a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 110 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred chhccccccccccceeeecCccceEEEEecCC
Confidence 986 8999999999999999999999998754
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.51 E-value=3.2e-14 Score=157.66 Aligned_cols=124 Identities=21% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
+|+++|.+++..++.++..++++|||+|||++++..+. . .+.++|||||+++|+.|+.+.+..++
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~-~--------------~~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAIN-E--------------LSTPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHH-H--------------SCSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHH-H--------------hcCceeEEEcccchHHHHHHHHHhhc
Confidence 69999999999999998899999999999998765432 1 13569999999999999999998874
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
.. .+....|+.. ....|+|+|.+.+...... ....+++||+||||++.. +.+..++..+
T Consensus 135 ~~---~~~~~~~~~~---------~~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~a----~~~~~i~~~~ 193 (206)
T d2fz4a1 135 EE---YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA----ESYVQIAQMS 193 (206)
T ss_dssp GG---GEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT----TTHHHHHHTC
T ss_pred cc---chhhcccccc---------cccccccceehhhhhhhHh---hCCcCCEEEEECCeeCCc----HHHHHHHhcc
Confidence 32 2444444322 2567999999887544332 346789999999998753 2344555443
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1e-13 Score=149.25 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=102.1
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeC
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD 1751 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d 1751 (1832)
.++++.+.||.....+.++..|... ++.+.++||.|++.+++.++..|++|+++|||||++++.|||+|+++++|..+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~ 109 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 109 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEec
Confidence 5789999999999999999998875 67899999999999999999999999999999999999999999999999999
Q ss_pred CCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1752 MAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1752 ~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
... ..+++.|..||+||.+..|.|+++..+.
T Consensus 110 a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 110 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred chhccccccccccceeeecCccceEEEEecCC
Confidence 886 8999999999999999999999888654
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=6.2e-14 Score=155.29 Aligned_cols=124 Identities=21% Similarity=0.180 Sum_probs=92.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.+++..++.++..++++|||+|||++++..+.. .+.++|||||+++|+.|+.+.+..++
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---------------~~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---------------LSTPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---------------SCSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHH---------------hcCceeEEEcccchHHHHHHHHHhhc
Confidence 699999999999999989999999999999987554421 13469999999999999999998875
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
.. .+....|+.. ...+|+|+|.+.+...... ...++++||+||||++.. +.+..++..+
T Consensus 135 ~~---~~~~~~~~~~---------~~~~i~i~t~~~~~~~~~~---~~~~~~lvIiDEaH~~~a----~~~~~i~~~~ 193 (206)
T d2fz4a1 135 EE---YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA----ESYVQIAQMS 193 (206)
T ss_dssp GG---GEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT----TTHHHHHHTC
T ss_pred cc---chhhcccccc---------cccccccceehhhhhhhHh---hCCcCCEEEEECCeeCCc----HHHHHHHhcc
Confidence 32 2444444322 2467999999887654432 346789999999998753 3445555544
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.43 E-value=3.9e-14 Score=146.17 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred HcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcC
Q psy6409 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg 842 (1832)
..|+++|++||||||||.+++..++.... ..+.+++|++|+++|+.|+.+.+... +..+....+.
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~-----------~~~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~~ 69 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAECA-----------RRRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFS 69 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHH-----------HTTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCC
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHhh-----------hcCceeeeeecchhHHHHHHHHhhhh----hhhhcccccc
Confidence 35899999999999999988777665542 23678999999999999988776543 2222221111
Q ss_pred CchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 843 ~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
... .....+.+.|...+...... ...+.++++||+||||++.
T Consensus 70 ~~~-------~~~~~~~~~~~~~l~~~~~~-~~~~~~~~lvIiDEaH~~~ 111 (140)
T d1yksa1 70 AHG-------SGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFLD 111 (140)
T ss_dssp CCC-------CSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCCS
T ss_pred ccc-------ccccchhhhhHHHHHHHHhc-cccccceeEEEEccccccC
Confidence 110 12456788888887655443 4478899999999999764
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.40 E-value=8e-14 Score=143.75 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=75.4
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECC
Q psy6409 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1438 l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg 1517 (1832)
-.|++++++||||||||.+++.+++..... .+.+++|++|+++|+.|+++.+..+ +..+....+.
T Consensus 5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~~ 69 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFS 69 (140)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCC
T ss_pred HcCCcEEEEcCCCCChhHHHHHHHHHHhhh-----------cCceeeeeecchhHHHHHHHHhhhh----hhhhcccccc
Confidence 368899999999999999887776655433 3678999999999999988776543 2222211111
Q ss_pred cchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1518 ~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
... .....+.+.|...+.... .....+.++++||+||||++..
T Consensus 70 ~~~-------~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIiDEaH~~~~ 112 (140)
T d1yksa1 70 AHG-------SGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLDP 112 (140)
T ss_dssp CCC-------CSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCSH
T ss_pred ccc-------ccccchhhhhHHHHHHHH-hccccccceeEEEEccccccCh
Confidence 111 123567788887765543 3445688999999999997743
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.31 E-value=1.6e-12 Score=133.72 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=71.2
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
.+..|+.||||||||+++...+. ..+.+++|++|+++|+.|+...+.+... .......+|..
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~---------------~~~~~vli~~P~~~l~~q~~~~~~~~~~---~~~~~~~~~~~ 69 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGAYMSKAHG---VDPNIRTGVRT 69 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH---------------TTTCCEEEEESCHHHHHHHHHHHHHHHS---CCCEEECSSCE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH---------------HcCCcEEEEcChHHHHHHHHHHHHHHhh---ccccccccccc
Confidence 35689999999999986533221 2467899999999999999999988643 23344444433
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
. .....++++|.+.+... ....+..+++|||||||++
T Consensus 70 ~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~vIiDE~H~~ 106 (136)
T d1a1va1 70 I-------TTGSPITYSTYGKFLAD---GGCSGGAYDIIICDECHST 106 (136)
T ss_dssp E-------CCCCSEEEEEHHHHHHT---TGGGGCCCSEEEEETTTCC
T ss_pred c-------ccccceEEEeeeeeccc---cchhhhcCCEEEEeccccc
Confidence 2 12467889998876433 3336789999999999965
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.27 E-value=2.7e-12 Score=132.01 Aligned_cols=128 Identities=19% Similarity=0.113 Sum_probs=85.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcch
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~ 1520 (1832)
+..++.||||||||+.+...++ ..+.++||++|+++|++|+...+.+.... ......++...
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~---------------~~~~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~ 70 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVRTI 70 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH---------------TTTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSCEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHH---------------HcCCcEEEEcChHHHHHHHHHHHHHHhhc---ccccccccccc
Confidence 5679999999999986533322 14668999999999999999999886432 23333443322
Q ss_pred HHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHH
Q psy6409 1521 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 1600 (1832)
Q Consensus 1521 ~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l 1600 (1832)
. ....++++|.+.+... ....+.++++|||||||++... ....+..++..+.
T Consensus 71 ~-------~~~~~~~~~~~~~~~~---~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~----------------- 122 (136)
T d1a1va1 71 T-------TGSPITYSTYGKFLAD---GGCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAE----------------- 122 (136)
T ss_dssp C-------CCCSEEEEEHHHHHHT---TGGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTT-----------------
T ss_pred c-------cccceEEEeeeeeccc---cchhhhcCCEEEEecccccCHH-HHHHHHHHHHHHH-----------------
Confidence 1 2357899998866433 3345789999999999975321 1122444444432
Q ss_pred HhhhccccCcceEEEEEccC
Q psy6409 1601 LANYNSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1601 ~~~~~~~~~~~q~v~~SATl 1620 (1832)
......++++|||+
T Consensus 123 ------~~~~~~~l~~TATP 136 (136)
T d1a1va1 123 ------TAGARLVVLATATP 136 (136)
T ss_dssp ------TTTCSEEEEEESSC
T ss_pred ------HCCCCcEEEEeCCC
Confidence 12346799999995
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.21 E-value=9.7e-12 Score=143.06 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=83.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-
Q psy6409 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM- 1077 (1832)
Q Consensus 999 ~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~- 1077 (1832)
..++++|||++...++.++..|...|..|.++||.+...++. .|++|+.+|||||+++++|||| +|.+||++++
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~ 109 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTA 109 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCce
Confidence 367899999999999999999999999999999999987765 4789999999999999999999 5999997764
Q ss_pred ------------------CCCHhHHHHHhcccccCCCCcEEEEEecC
Q psy6409 1078 ------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1106 (1832)
Q Consensus 1078 ------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~ 1106 (1832)
|.|.++..||.||+||.+....++.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~ 156 (299)
T d1yksa2 110 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 156 (299)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCC
Confidence 34889999999999998654445555543
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.07 E-value=1.2e-10 Score=133.82 Aligned_cols=101 Identities=25% Similarity=0.365 Sum_probs=80.7
Q ss_pred CCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC--
Q psy6409 1675 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-- 1752 (1832)
Q Consensus 1675 ~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-- 1752 (1832)
.++++|||++...++.++..|...|+.|..+||.+...++. .|++|+.+|||||++++.|||+ +|..||+.++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCcee
Confidence 57899999999999999999999999999999999877755 5789999999999999999999 5999996553
Q ss_pred -----------------CCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1753 -----------------AKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1753 -----------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
|.|.++..||.||+||.+....++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 3488999999999999765444444443
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.06 E-value=4e-10 Score=133.29 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHh---CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcc
Q psy6409 1660 QDKRKKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATD 1733 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~---~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATd 1733 (1832)
..|...|..++.. ..+.++|||++.....+.|...|...|+.+..+||+++..+|..+++.|.++... +|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 4577777776653 4567999999999999999999999999999999999999999999999987543 677889
Q ss_pred cccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEE--EEEeeCC--ChhHHHHHH
Q psy6409 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKD--DSHLFYDLK 1791 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a--i~~~~~~--d~~~~~~l~ 1791 (1832)
+++.|||++.++.||+||+++++..+.|++||+-|.|+...+ +.|+... |..++..+.
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~ 241 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA 241 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999977544 4445555 334444443
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.02 E-value=6.7e-10 Score=131.31 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHc---CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc---EEEecc
Q psy6409 985 QDKRKKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATD 1058 (1832)
Q Consensus 985 ~~k~~~L~~~l~~---~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~---VLVaTd 1058 (1832)
..|+..|..++.. ..+.++|||++.....+.+...|...|+.+..+||+++..+|..+++.|.++... +|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 4577777666643 4577999999999999999999999999999999999999999999999987543 688899
Q ss_pred cccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
+++.|||++.+++||.||++.++..+.|++||+-|.|... .++.|++.+
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 9999999999999999999999999999999999999874 456666665
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.01 E-value=2.8e-10 Score=128.96 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhhCC-CCcEEEE-cc
Q psy6409 1659 EQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGG-SKDILVA-TD 1733 (1832)
Q Consensus 1659 ~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~~g-~~~VLVA-Td 1733 (1832)
...|...+.+++... .+.++||||+.....+.+...|.. .++.+..+||+++..+|..+++.|.++ .+.|||+ |.
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 456888888888653 677999999999999999888865 489999999999999999999999866 4677765 57
Q ss_pred cccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc--cEEEEEeeCC--ChhHHHHHH
Q psy6409 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD--DSHLFYDLK 1791 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~--G~ai~~~~~~--d~~~~~~l~ 1791 (1832)
+.+.|+|++.+++||+|++|+|+..+.|++||+.|.|+. -.++.|+..+ |..++..+.
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~ 208 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLA 208 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHH
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999865 3445566666 334444333
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.00 E-value=4.7e-10 Score=127.03 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHhCC-CCcEEEe-cc
Q psy6409 984 EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGG-SKDILVA-TD 1058 (1832)
Q Consensus 984 ~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il~~F~~G-~~~VLVa-Td 1058 (1832)
...|+..+.+++.. ..+.++||||+.....+.+...|... +..+..+||+++..+|..+++.|.++ ...|||+ |.
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 35688888888764 35778999999999999999888654 89999999999999999999999866 4667655 57
Q ss_pred cccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
+++.|+|++.+++||+|++|.++..+.|++||+.|.|.. -.++.|++.+
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCC
Confidence 899999999999999999999999999999999999865 4566677776
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.93 E-value=1.9e-09 Score=111.95 Aligned_cols=127 Identities=22% Similarity=0.317 Sum_probs=103.4
Q ss_pred EEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec
Q psy6409 980 YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1057 (1832)
Q Consensus 980 ~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT 1057 (1832)
.+.....|...+.+.+.. ..+.|+|||+.|.+.++.++..|...+++..++++.....+-+.+-+... ...|.|||
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~--~g~VtIAT 89 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--KGAVTIAT 89 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS--TTCEEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHhccC--CCceeehh
Confidence 345677787777766643 35679999999999999999999999999999999865444433333333 33699999
Q ss_pred ccccccCCCc---Cc-----CEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1058 DVAGRGIDIK---DV-----SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1058 dv~~rGlDip---~v-----~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++|+||.||. .| -|||..-.|.|..-..|..|||||-|.+|.+..|++-+|
T Consensus 90 NmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 90 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 9999999984 22 389999999999999999999999999999999998876
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=5e-09 Score=108.76 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=104.4
Q ss_pred EEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc
Q psy6409 1655 YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1732 (1832)
Q Consensus 1655 ~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT 1732 (1832)
.+.....|..++++.+.. ..+.|+||||.|+..++.++..|...++...++++.....+-+.+-+....| .|.|||
T Consensus 12 vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~g--~VtIAT 89 (175)
T d1tf5a4 12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIAT 89 (175)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHhccCCC--ceeehh
Confidence 345667788887776653 2578999999999999999999999999999999987655544444333333 699999
Q ss_pred ccccccCCCCC---C-----CEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1733 DVAGRGIDIKD---V-----SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1733 dvl~~GIDip~---v-----~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+.++||.||.- | -+||..-.|.|..-..|-.||+||-|.+|.+.+|++-+|
T Consensus 90 NmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 90 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 99999999852 2 389999999999999999999999999999999997765
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.51 E-value=3.3e-07 Score=106.31 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=87.4
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
.+.|+|.+++.+++ .+...|+.-..|.|||+.++-.+...+...+. .......+|||||. .|+.|
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~-----~~~~~~~~LIV~P~-sl~~q 128 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVRN 128 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhccc-----ccCCCCcEEEEccc-hhhHH
Confidence 68999999998774 24568999999999998754433333332211 11233469999997 48899
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHHHH--Hh------hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGF--RL------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~~~--~l------~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
+.+++.+++.. ...++.++|+........ .. ....+++|+|.+.+.... ..+.--++++||+||||++-
T Consensus 129 W~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~--~~l~~~~~~~vI~DEaH~ik 205 (298)
T d1z3ix2 129 WYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLK 205 (298)
T ss_dssp HHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccch--hcccccceeeeecccccccc
Confidence 99999998643 344555665544322111 11 113579999988765332 22333467899999999875
Q ss_pred c
Q psy6409 1568 D 1568 (1832)
Q Consensus 1568 ~ 1568 (1832)
.
T Consensus 206 n 206 (298)
T d1z3ix2 206 N 206 (298)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.49 E-value=4.6e-07 Score=105.03 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=86.4
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 750 EPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il---------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
.+.|+|.+++.-+. .+...|++-+.|.|||+.++-.+...+...+. .......+|||||.. |..|
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~-----~~~~~~~~LIV~P~s-l~~q 128 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPSS-LVRN 128 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECHH-HHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhccc-----ccCCCCcEEEEccch-hhHH
Confidence 68999999997553 23458888899999998754433333222111 112335699999985 8899
Q ss_pred HHHHHHHhcCCCCCeEEEEEcCCchHHHH--HHHh------cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 821 IEEETNKFGTPLGIRTVLVVGGLSREEQG--FRLR------LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 821 i~~~~~~~~~~~~i~v~~~~Gg~~~~~~~--~~l~------~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
+.+++.+++.. ...++.++|+....... .... ...+++|+|.+.+.... ..+.--.+++||+||||++-
T Consensus 129 W~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~--~~l~~~~~~~vI~DEaH~ik 205 (298)
T d1z3ix2 129 WYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLK 205 (298)
T ss_dssp HHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccch--hcccccceeeeecccccccc
Confidence 99999998653 34455666655432211 1111 13578999988774332 22233467899999999876
Q ss_pred c
Q psy6409 893 D 893 (1832)
Q Consensus 893 d 893 (1832)
+
T Consensus 206 n 206 (298)
T d1z3ix2 206 N 206 (298)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.47 E-value=2.2e-07 Score=103.59 Aligned_cols=124 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+.|||.+++..+. .+.++|+..++|.|||+.++..+...... .....+|||+| ..++.|+.+++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~----------~~~~~~LIv~p-~~l~~~W~~e~ 80 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE----------NELTPSLVICP-LSVLKNWEEEL 80 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT----------TCCSSEEEEEC-STTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhc----------ccccccceecc-hhhhhHHHHHH
Confidence 68999999998764 35678999999999999875444333222 23446899999 56778899999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcC
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~ 1569 (1832)
.+++... .+.. ++....... ..+.+|+|+|.+.+.... .+.--.+.+||+||||++...
T Consensus 81 ~~~~~~~--~~~~-~~~~~~~~~----~~~~~vvi~~~~~~~~~~---~l~~~~~~~vI~DEah~~k~~ 139 (230)
T d1z63a1 81 SKFAPHL--RFAV-FHEDRSKIK----LEDYDIILTTYAVLLRDT---RLKEVEWKYIVIDEAQNIKNP 139 (230)
T ss_dssp HHHCTTS--CEEE-CSSSTTSCC----GGGSSEEEEEHHHHTTCH---HHHTCCEEEEEEETGGGGSCT
T ss_pred Hhhcccc--ccee-eccccchhh----ccCcCEEEeeHHHHHhHH---HHhcccceEEEEEhhhccccc
Confidence 9886533 3332 222221111 124789999988764322 122335788999999988543
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.34 E-value=7.2e-07 Score=99.26 Aligned_cols=123 Identities=22% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
++.|+|.+++.-+. .+...|+.-++|.|||+.++..+. ++.. ......+||||| ..|..|+.+++
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~-~~~~---------~~~~~~~LIv~p-~~l~~~W~~e~ 80 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKK---------ENELTPSLVICP-LSVLKNWEEEL 80 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHH---------TTCCSSEEEEEC-STTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhh-hhhh---------cccccccceecc-hhhhhHHHHHH
Confidence 58899999997553 245688899999999998755443 3221 123456899999 67778899999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d 893 (1832)
.++.... .+....+..... .....+|+++|.+.+...- .+.--.+.+||+||||++-.
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~-----~~~~~~vvi~~~~~~~~~~---~l~~~~~~~vI~DEah~~k~ 138 (230)
T d1z63a1 81 SKFAPHL--RFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDT---RLKEVEWKYIVIDEAQNIKN 138 (230)
T ss_dssp HHHCTTS--CEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCH---HHHTCCEEEEEEETGGGGSC
T ss_pred Hhhcccc--cceeeccccchh-----hccCcCEEEeeHHHHHhHH---HHhcccceEEEEEhhhcccc
Confidence 9886543 333322222111 1124789999998774321 12223678899999998764
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.26 E-value=2.5e-06 Score=93.59 Aligned_cols=130 Identities=25% Similarity=0.296 Sum_probs=104.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--.+..|+ |+...||-|||+++.+|++...+ .|..+-|+...--||.-=++++
T Consensus 77 lG~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al------------~g~~vhvvTvNdyLA~RDae~m 141 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQM 141 (273)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHh------------cCCCceEEecCccccchhhhHH
Confidence 454 78999998888888885 89999999999999999975432 3667888999999999888889
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~ 892 (1832)
..+...+|+.|+++..+.+..+..... .++|+++|..-+- |.|.... .....+.+.|+||+|.|+
T Consensus 142 ~~iy~~lGlsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 142 GKIFEFLGLTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred hHHHHHcCCCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 988888999999999888776554443 5899999998875 5554322 245568999999999865
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=3.3e-06 Score=92.60 Aligned_cols=180 Identities=22% Similarity=0.233 Sum_probs=125.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-.--.+..|+ |..+.||-|||+++.+|+..... .|..|=||...--||.-=.+|+
T Consensus 77 lG~-RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al------------~g~~vhvvTvNdyLA~RDae~m 141 (273)
T d1tf5a3 77 TGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQM 141 (273)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hce-EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHh------------cCCCceEEecCccccchhhhHH
Confidence 466 78899988888887875 99999999999999999875432 3667888999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhh-cCCCh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMGFE 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll-~~gf~ 1572 (1832)
..+...+|+.|.++..+.+..+..... .+||+.+|...+- +.|+.+. .....+.+.|+||+|.++ |....
T Consensus 142 ~~iy~~lGlsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeart 219 (273)
T d1tf5a3 142 GKIFEFLGLTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 219 (273)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred hHHHHHcCCCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCC
Confidence 999899999999998887776554333 5899999998774 6665433 345678999999999765 22211
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc
Q psy6409 1573 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 1632 (1832)
Q Consensus 1573 ~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l 1632 (1832)
|-+- + ....+......+.. -+.+.++.++|.|......++..-|-
T Consensus 220 plii---s------g~~~~~a~it~q~~------f~~y~~l~gmtgta~~~~~e~~~iy~ 264 (273)
T d1tf5a3 220 PLII---S------GQSMTLATITFQNY------FRMYEKLAGMTGTAKTEEEEFRNIYN 264 (273)
T ss_dssp EEEE---E------EEEEEEEEEEHHHH------HTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred ceEe---c------cCccchhhhhHHHH------HHHHHHHhCCccccHHHHHHHHhccC
Confidence 1100 0 00000000000001 12345788999998777777777664
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.22 E-value=2.8e-06 Score=89.05 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=100.9
Q ss_pred EEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec
Q psy6409 980 YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1057 (1832)
Q Consensus 980 ~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT 1057 (1832)
.+.....|...+.+-+.. ..+.||||.+.|.+..+.++..|...+++..++++.-...+-..|-+.=+.| .|-|||
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~G--aVTIAT 89 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVAT 89 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHHHHHhcccCC--cEEeec
Confidence 445677788877776654 3677999999999999999999999999999999974433333333222333 589999
Q ss_pred ccccccCCCcC----------------------------------------------------cCEEEEcCCCCCHhHHH
Q psy6409 1058 DVAGRGIDIKD----------------------------------------------------VSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1058 dv~~rGlDip~----------------------------------------------------v~~VI~~d~p~s~~~yv 1085 (1832)
++|+||.||-= ==+||-.....|..-=.
T Consensus 90 NMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDn 169 (219)
T d1nkta4 90 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 169 (219)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred cccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccc
Confidence 99999999921 12788777777888889
Q ss_pred HHhcccccCCCCcEEEEEecCCCc
Q psy6409 1086 HRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1086 Qr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|-.||+||-|.+|.+.+|++-+|.
T Consensus 170 QLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 170 QLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp HHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccccccccCCCccceeEEeccHH
Confidence 999999999999999999998873
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.02 E-value=2.7e-05 Score=81.52 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=102.3
Q ss_pred EEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc
Q psy6409 1655 YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1732 (1832)
Q Consensus 1655 ~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT 1732 (1832)
.+.....|..++++-+.. ....||||.+.|+...+.|+..|...++...++++.-...+-..|-+.=+.| .|-|||
T Consensus 12 Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~G--aVTIAT 89 (219)
T d1nkta4 12 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVAT 89 (219)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHHHHHhcccCC--cEEeec
Confidence 445677888888776654 3678999999999999999999999999999999975544444443333333 489999
Q ss_pred ccccccCCCC----------------------------------------------------CCCEEEEeCCCCCHHHHH
Q psy6409 1733 DVAGRGIDIK----------------------------------------------------DVSMVINYDMAKSIEDYT 1760 (1832)
Q Consensus 1733 dvl~~GIDip----------------------------------------------------~v~~VI~~d~P~s~~~yi 1760 (1832)
+.++||.||- .=-+||-.....|-.-=-
T Consensus 90 NMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDn 169 (219)
T d1nkta4 90 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 169 (219)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred cccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccc
Confidence 9999999992 113688877788888888
Q ss_pred HHhcccccCCCccEEEEEeeCCCh
Q psy6409 1761 HRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1761 QRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|-.||+||-|.+|.+.+|++=+|.
T Consensus 170 QLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 170 QLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp HHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccccccccCCCccceeEEeccHH
Confidence 999999999999999999998764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00079 Score=78.70 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..++.|.+|+..++.++-+++.||.|||||.+.. -++..+... ....+.++++++||..-|..+.+.+...
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~-------~~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQM-------ADGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHT-------CSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred ccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHH-------HhccCCeEEEecCcHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998742 233222221 1235778999999999998887776543
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0032 Score=73.41 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
..++.|.+|+..++.++-+++.+|.|||||.... .++..+... ....+.++++++||-.-|..+.+.+..
T Consensus 148 ~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~-------~~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 148 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQM-------ADGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp TSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHT-------CSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred ccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHH-------HhccCCeEEEecCcHHHHHHHHHHHHH
Confidence 4567899999999999889999999999998742 222222221 123567899999999888887666544
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.31 E-value=0.0023 Score=72.97 Aligned_cols=71 Identities=21% Similarity=0.175 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
+++|-|.+|+.. ....++|.|+.|||||.+.+.-+...+... .....++||+++|+.+|..+...+.+..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~--------~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--------GYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--------CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhc--------CCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 478999999954 345699999999999998655444333210 1123479999999999999988888764
Q ss_pred C
Q psy6409 830 T 830 (1832)
Q Consensus 830 ~ 830 (1832)
.
T Consensus 71 ~ 71 (306)
T d1uaaa1 71 G 71 (306)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.02 E-value=0.0039 Score=70.90 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
+++|-|.+|+.. ....++|.|+.|||||.+.+.-+...+... .....++||+++|+.+|..+...+.+..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~--------~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--------GYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--------CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhc--------CCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 478999999964 346799999999999987655444333221 1133469999999999999988887764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.16 E-value=0.016 Score=66.08 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.. .....-++|++++|+.+|..+...+...
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~--------~~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAE--------KHVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHT--------TCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHc--------CCCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 488999999974 34569999999999999865544433321 0112247999999999999998888765
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.76 E-value=0.024 Score=64.63 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... .....+++++++|+.++..+...+...
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~--------~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--------HVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcC--------CCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 588999999974 345799999999999998765555444321 112346999999999999988888765
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.59 E-value=0.045 Score=58.05 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=67.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc--cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA--PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila--PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
++++||||+|||.+..--+..+. . .+.++++++ ..|.-|.++.+.+.+. +++.+.........
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~-~-----------~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~v~~~~~~~~~~~ 77 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK-G-----------KGRRPLLVAADTQRPAAREQLRLLGEK---VGVPVLEVMDGESP 77 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH-H-----------TTCCEEEEECCSSCHHHHHHHHHHHHH---HTCCEEECCTTCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H-----------CCCcEEEEecccccchHHHHHHHHHHh---cCCccccccccchh
Confidence 56699999999987554443221 1 133344444 3577776655555543 45555444333332
Q ss_pred HHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-ChHHHHHHHHhCCCCCCCCCCchhHHHHH
Q psy6409 846 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNLKPDTEDAEDENK 924 (1832)
Q Consensus 846 ~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g-f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ 924 (1832)
..- ..... ....++.+++|+||=|-+..... ....+..+....
T Consensus 78 ~~~------------------~~~~~-~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~----------------- 121 (207)
T d1ls1a2 78 ESI------------------RRRVE-EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL----------------- 121 (207)
T ss_dssp HHH------------------HHHHH-HHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-----------------
T ss_pred hHH------------------HHHHH-HHHhhccCcceeecccccchhhhhhHHHHHHHHhhc-----------------
Confidence 111 00000 01135667888888877543211 111222222211
Q ss_pred HHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 925 LLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 925 ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
....-++.++||.+......+..|.
T Consensus 122 --------~~~~~llv~~a~~~~~~~~~~~~f~ 146 (207)
T d1ls1a2 122 --------GPDEVLLVLDAMTGQEALSVARAFD 146 (207)
T ss_dssp --------CCSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred --------CCceEEEEeccccchhHHHHHHHHH
Confidence 2235678889999887777776664
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.075 Score=56.43 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHH----cCC---cEEEEecCCChHHHHHHHHH
Q psy6409 751 PTPIQRQAIPIGL----QNR---DIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 751 pt~iQ~~ai~~il----~gr---dvIv~apTGSGKTla~llpi 786 (1832)
.+|+|..++..+. .++ -+|+.||.|+|||..+..-+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHH
Confidence 3467777666553 333 39999999999999765543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.15 E-value=0.074 Score=56.23 Aligned_cols=87 Identities=22% Similarity=0.153 Sum_probs=48.4
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
+-++++||||+|||.+..--+. ++.. .....+||-+-| |.-|.++.+.+.+. +++.+.....+..
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~----------~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~i~~~~~~~~~d 72 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN----------LGKKVMFCAGDTFRAAGGTQLSEWGKR---LSIPVIQGPEGTD 72 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT----------TTCCEEEECCCCSSTTHHHHHHHHHHH---HTCCEECCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH----------CCCcEEEEEeccccccchhhHhhcccc---cCceEEeccCCcc
Confidence 4478899999999987554332 2211 123344454544 77776655555443 4666555555444
Q ss_pred hHHHHH------HHhcCCceeecCHHHH
Q psy6409 845 REEQGF------RLRLGCEIVIATPGRL 866 (1832)
Q Consensus 845 ~~~~~~------~l~~~~~IlV~TP~rL 866 (1832)
...... .....-.|+|=|||+.
T Consensus 73 ~~~~~~~~~~~~~~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 73 PAALAYDAVQAMKARGYDLLFVDTAGRL 100 (207)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEcCccccc
Confidence 333221 1222345777898863
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.11 Score=54.79 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=48.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
++++||||+|||.+..--+.. +.. .....+||.+-| |.-|.++.+.+.+. +++.+.....+....
T Consensus 12 i~lvGptGvGKTTTiAKLA~~-~~~----------~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~v~~~~~~~~~d~~ 77 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQ-FEQ----------QGKSVMLAAGDTFRAAAVEQLQVWGQR---NNIPVIAQHTGADSA 77 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-HHT----------TTCCEEEECCCTTCHHHHHHHHHHHHH---TTCCEECCSTTCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH----------CCCcEEEEecccccccchhhhhhhhhh---cCCcccccccCCCHH
Confidence 567999999999875543322 211 123345555555 66666655554443 677776666555544
Q ss_pred HHHHHH-----hcCC-ceeecCHHHH
Q psy6409 847 EQGFRL-----RLGC-EIVIATPGRL 866 (1832)
Q Consensus 847 ~~~~~l-----~~~~-~IlV~TP~rL 866 (1832)
...... ..+. .|+|=|||+.
T Consensus 78 ~~l~~~~~~a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 78 SVIFDAIQAAKARNIDVLIADTAGRL 103 (211)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCG
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCc
Confidence 332211 1233 4677888853
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=93.04 E-value=0.078 Score=62.15 Aligned_cols=139 Identities=20% Similarity=0.289 Sum_probs=68.8
Q ss_pred ccCCCCChhhhh--hccc----ccCCC-cEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHH
Q psy6409 5 IGYAEPTPIQRQ--AIPI----GLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 77 (1832)
Q Consensus 5 ~~~~~~~p~Q~~--~ip~----~l~g~-d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa 77 (1832)
|-|.-|||.+-| ||.- +-.|. .+.+.+-||||||+. +..|.. . ...| +|||+|+-+.|
T Consensus 2 ~~~~~~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~--~A~l~~--~----------~~rp-~LvVt~~~~~A 66 (408)
T d1c4oa1 2 FRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVT--MAKVIE--A----------LGRP-ALVLAPNKILA 66 (408)
T ss_dssp CCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH--HHHHHH--H----------HTCC-EEEEESSHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHH--HHHHHH--H----------hCCC-EEEEeCCHHHH
Confidence 567778887665 6653 44454 578889999999953 333321 0 1223 58999999999
Q ss_pred HHHHHHHHhcCCCccceE------------------EEEeCCcchH--------HHhHHhhcCccEEEcCchhhHHHh--
Q psy6409 78 QQIEEETNKFGTPLGIRT------------------VLVVGGLSRE--------EQGFRLRLGCEIVIATPGRLIDVL-- 129 (1832)
Q Consensus 78 ~qi~~~~~~~~~~~~~~~------------------~~~~gg~~~~--------~q~~~l~~~~~Ilv~TPgrl~~~~-- 129 (1832)
.++++.++.|.....+.. .......... .....+..++.|||+|+-.++.-+
T Consensus 67 ~~l~~dL~~~l~~~~v~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~ 146 (408)
T d1c4oa1 67 AQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGD 146 (408)
T ss_dssp HHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCC
T ss_pred HHHHHHHHHhcCccceeeCCchhhccCccccCchhhhhhhhhhhhhhHHHhhhhhhhhhhcccCceEEEecchhhccCCC
Confidence 999999999864322110 1111111111 122334467788888888776433
Q ss_pred ----hhccccCCcceEEEEccc-chhhcCCChHH
Q psy6409 130 ----ENRYLVLNQCTYIVLDEA-DRMIDMGFEPD 158 (1832)
Q Consensus 130 ----~~~~~~l~~~~~~vlDEa-d~~l~~gf~~~ 158 (1832)
....+.+..=+-+=+||. .++..|||+..
T Consensus 147 ~~~~~~~~~~l~~G~~~~~~~l~~~L~~~gY~r~ 180 (408)
T d1c4oa1 147 PREYRARNLVVERGKPYPREVLLERLLELGYQRN 180 (408)
T ss_dssp HHHHHHCCBC------------------------
T ss_pred cHHHhhceEEeeCCCEeeHHHHHHHHHHhhceec
Confidence 122333332222334443 67888998653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.42 E-value=0.2 Score=52.93 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=45.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
++++||||+|||....--+..+. . .....+||-+.| |.=|.++.+.+.+ .+++.+.....+....
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~-~----------~~~kV~lit~Dt~R~gA~eQL~~~a~---~l~i~~~~~~~~~d~~ 79 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFV-D----------EGKSVVLAAADTFRAAAIEQLKIWGE---RVGATVISHSEGADPA 79 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH-H----------TTCCEEEEEECTTCHHHHHHHHHHHH---HHTCEEECCSTTCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H----------CCCceEEEeecccccchhHHHHHHhh---hcCccccccCCCCcHH
Confidence 67799999999987554333221 1 123456666654 6666655444443 3566665544444432
Q ss_pred HH-----HHHHhcCC-ceeecCHHH
Q psy6409 847 EQ-----GFRLRLGC-EIVIATPGR 865 (1832)
Q Consensus 847 ~~-----~~~l~~~~-~IlV~TP~r 865 (1832)
.- ......++ .|+|=|||+
T Consensus 80 ~~~~~~~~~~~~~~~d~ilIDTaGr 104 (213)
T d1vmaa2 80 AVAFDAVAHALARNKDVVIIDTAGR 104 (213)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEecccc
Confidence 21 11112233 477888874
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=91.78 E-value=0.11 Score=60.87 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQ----N-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~----g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.|+--|-+||..+.+ | ++.++.+.||||||++..- ++.. .+..+|||+|+..+|.|+++.
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~-l~~~--------------~~rp~LVVt~n~~~A~qL~~d 75 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISN-VIAQ--------------VNKPTLVIAHNKTLAGQLYSE 75 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHH-HHHH--------------HTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHH-HHHH--------------hCCCEEEEeCCHHHHHHHHHH
Confidence 577778888877664 3 5689999999999975422 2111 133489999999999999999
Q ss_pred HHHhcC
Q psy6409 1500 TNKFGT 1505 (1832)
Q Consensus 1500 ~~~~~~ 1505 (1832)
++.+..
T Consensus 76 L~~~l~ 81 (413)
T d1t5la1 76 LKEFFP 81 (413)
T ss_dssp HHHHCT
T ss_pred HHHHcC
Confidence 999863
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.63 E-value=0.46 Score=49.62 Aligned_cols=32 Identities=16% Similarity=-0.108 Sum_probs=23.4
Q ss_pred HHHHHHHHHc---CCcEEEEecCCChHHHHHHHHH
Q psy6409 755 QRQAIPIGLQ---NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 755 Q~~ai~~il~---grdvIv~apTGSGKTla~llpi 786 (1832)
|.+.+..+.. +..+|+.||.|+|||..+....
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~ 36 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP 36 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 5566666664 3469999999999998765433
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=91.50 E-value=0.13 Score=60.24 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHc----C-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQ----N-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~----g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.|+--|-+||..+.+ | ++.++.|-||||||++..- ++.. .+..+|||+|+..+|.|+++.
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~-l~~~--------------~~rp~LVVt~n~~~A~qL~~d 75 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISN-VIAQ--------------VNKPTLVIAHNKTLAGQLYSE 75 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHH-HHHH--------------HTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHH-HHHH--------------hCCCEEEEeCCHHHHHHHHHH
Confidence 456667777766654 3 5689999999999975332 2111 133489999999999999999
Q ss_pred HHHhcC
Q psy6409 825 TNKFGT 830 (1832)
Q Consensus 825 ~~~~~~ 830 (1832)
++.+..
T Consensus 76 L~~~l~ 81 (413)
T d1t5la1 76 LKEFFP 81 (413)
T ss_dssp HHHHCT
T ss_pred HHHHcC
Confidence 999854
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.41 Score=50.35 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=42.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE-cCc-HHHHHHHHHHHHHhcCCCCCeEEEEECCcch
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM-APT-RELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL-aPt-reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~ 1520 (1832)
+++++|||+|||.+..--+.. +.. .+.++.++ +-| |.=|.++.+.+.+. +++.+.....+...
T Consensus 12 i~lvGptGvGKTTTiAKLA~~-~~~-----------~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~v~~~~~~~~~d~ 76 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQ-FEQ-----------QGKSVMLAAGDTFRAAAVEQLQVWGQR---NNIPVIAQHTGADS 76 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-HHT-----------TTCCEEEECCCTTCHHHHHHHHHHHHH---TTCCEECCSTTCCH
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH-----------CCCcEEEEecccccccchhhhhhhhhh---cCCcccccccCCCH
Confidence 567999999999875443322 221 23344444 444 55555444444333 46665544444443
Q ss_pred HHHHHH-----hhcCCc-EEEeCHHH
Q psy6409 1521 EEQGFR-----LRLGCE-IVIATPGR 1540 (1832)
Q Consensus 1521 ~~~~~~-----l~~~~~-IiVaTP~r 1540 (1832)
...... ...+++ |+|=|+|+
T Consensus 77 ~~~l~~~~~~a~~~~~d~ilIDTaGr 102 (211)
T d2qy9a2 77 ASVIFDAIQAAKARNIDVLIADTAGR 102 (211)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 332221 123444 55678874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.90 E-value=0.34 Score=51.02 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=28.8
Q ss_pred Cc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC--cHHHHHHHHHHHHHh
Q psy6409 1441 RD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP--TRELAQQIEEETNKF 1503 (1832)
Q Consensus 1441 ~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP--treLa~Qi~~~~~~~ 1503 (1832)
++ +++++|||+|||.+..--+.. +.. .+.++++++- .|.-|.++.+.+.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~-~~~-----------~g~kV~lit~Dt~R~gA~eQL~~~a~~ 63 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY-YKG-----------KGRRPLLVAADTQRPAAREQLRLLGEK 63 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH-HHH-----------TTCCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHH-----------CCCcEEEEecccccchHHHHHHHHHHh
Confidence 45 466899999999865443322 221 2334555544 666665555554443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=90.56 E-value=0.099 Score=59.37 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=41.3
Q ss_pred HHHHHHcCCCC---CcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 740 LEIIEKIGYAE---PTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 740 ~~~l~~~g~~~---pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
+..+...|+.. ..+-+...+..+. .++|++|+|+||||||.. +-.++.+ ....-+++++--+.
T Consensus 137 l~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~------------i~~~~rivtiEd~~ 203 (323)
T d1g6oa_ 137 HSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEF------------IPKEERIISIEDTE 203 (323)
T ss_dssp HHHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGG------------SCTTCCEEEEESSC
T ss_pred hHHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhh------------cccccceeeccchh
Confidence 34455555543 3344555555554 478999999999999984 2233221 12355788888888
Q ss_pred hH
Q psy6409 816 EL 817 (1832)
Q Consensus 816 eL 817 (1832)
||
T Consensus 204 El 205 (323)
T d1g6oa_ 204 EI 205 (323)
T ss_dssp CC
T ss_pred hh
Confidence 87
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.55 E-value=0.34 Score=50.91 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=44.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc-C-cHHHHHHHHHHHHHhcCCCCCeEEEEECCc
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA-P-TRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa-P-treLa~Qi~~~~~~~~~~~g~~v~~l~gg~ 1518 (1832)
+-+++++|||+|||.+..--+. ++.. .+.++.+++ - .|.=|.++.+.+.+. +++.+.....+.
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~-----------~g~kV~lit~Dt~R~gA~eQL~~~a~~---l~i~~~~~~~~~ 71 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN-----------LGKKVMFCAGDTFRAAGGTQLSEWGKR---LSIPVIQGPEGT 71 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT-----------TTCCEEEECCCCSSTTHHHHHHHHHHH---HTCCEECCCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH-----------CCCcEEEEEeccccccchhhHhhcccc---cCceEEeccCCc
Confidence 4467899999999987544332 2221 233444444 3 456565544444443 355544444443
Q ss_pred chHHHHH-----HhhcCCc-EEEeCHHHH
Q psy6409 1519 SREEQGF-----RLRLGCE-IVIATPGRL 1541 (1832)
Q Consensus 1519 ~~~~~~~-----~l~~~~~-IiVaTP~rl 1541 (1832)
....... ....+++ |+|=|+|+.
T Consensus 72 d~~~~~~~~~~~~~~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 72 DPAALAYDAVQAMKARGYDLLFVDTAGRL 100 (207)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEECCCCCC
T ss_pred cHHHHHHHHHHHHHHCCCCEEEcCccccc
Confidence 3332221 1122444 556788853
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.32 E-value=0.83 Score=49.00 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=28.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC---CcEEEEecCCChHHHHHHH
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g---rdvIv~apTGSGKTla~ll 784 (1832)
++|+++-.++.+.+.|... +.++ ..+|+.||.|+|||.++.+
T Consensus 9 ~~~~dlig~~~~~~~L~~~---------------i~~~~~~~~~Ll~Gp~G~GKtt~a~~ 53 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSIARL 53 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHH---------------HHTTCCCSEEEEECSTTSSHHHHHHH
T ss_pred CCHHHccChHHHHHHHHHH---------------HHcCCCCeeEEEECCCCCcHHHHHHH
Confidence 3677776667776665431 1222 2489999999999987654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.42 Score=52.08 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=29.4
Q ss_pred cCcccCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 728 RNWKEASLPTEILEIIEKI--GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
-+|++.+-.+.+.+.|.+. -+..|..+|.-- +-..+.+++.||.|+|||+.+
T Consensus 9 ~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 4788887766666655431 011222222110 011366999999999999854
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.89 E-value=0.43 Score=50.33 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=42.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC-cHHHHHHHHHHHHHhcCCCCCeEEEEECCcchH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP-TRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP-treLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~ 1521 (1832)
+++++|||+|||....--+..+ .. .....+||-+. .|.=|.++.+.+.+ .+++.+.....+....
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~-~~----------~~~kV~lit~Dt~R~gA~eQL~~~a~---~l~i~~~~~~~~~d~~ 79 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMF-VD----------EGKSVVLAAADTFRAAAIEQLKIWGE---RVGATVISHSEGADPA 79 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-HH----------TTCCEEEEEECTTCHHHHHHHHHHHH---HHTCEEECCSTTCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HH----------CCCceEEEeecccccchhHHHHHHhh---hcCccccccCCCCcHH
Confidence 5779999999998754333322 22 12344555555 45555444444433 2455554433333322
Q ss_pred HH-----HHHhhcCCc-EEEeCHHH
Q psy6409 1522 EQ-----GFRLRLGCE-IVIATPGR 1540 (1832)
Q Consensus 1522 ~~-----~~~l~~~~~-IiVaTP~r 1540 (1832)
.- .....++++ |+|=|||+
T Consensus 80 ~~~~~~~~~~~~~~~d~ilIDTaGr 104 (213)
T d1vmaa2 80 AVAFDAVAHALARNKDVVIIDTAGR 104 (213)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEecccc
Confidence 11 112233454 55678873
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.69 E-value=0.41 Score=51.85 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=30.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il--~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+--+.+.+.|.+. -.+ ..+.+.+...- ..+.+|+.||.|+|||+.+
T Consensus 4 p~~~~~di~G~~~~k~~l~~~--i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 4 PKVTFKDVAGAEEAKEELKEI--VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CSCCGGGCCSCHHHHHHHHHH--HHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCcHHHHccHHHHHHHHHHH--HHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 336899887666666665431 000 00111122111 1246999999999999854
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.87 E-value=0.71 Score=48.68 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHH
Q psy6409 1442 DIIGVAETGSGKTLA 1456 (1832)
Q Consensus 1442 dvii~ApTGSGKTla 1456 (1832)
.+++.+|+|+|||..
T Consensus 38 ~l~l~G~~G~GKTHL 52 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHL 52 (213)
T ss_dssp SEEEECSSSSSHHHH
T ss_pred cEEEECCCCCcHHHH
Confidence 389999999999974
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.33 E-value=0.4 Score=50.48 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=26.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEE
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTV 837 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~ 837 (1832)
++++||||+|||.+..--+. ++.. .....+||.+-| |.=|.++.+.+.+. +|+.+.
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~----------~g~kV~lit~Dt~R~ga~eQL~~~a~~---l~v~~~ 71 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKK----------KGFKVGLVGADVYRPAALEQLQQLGQQ---IGVPVY 71 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHH----------TTCCEEEEECCCSSHHHHHHHHHHHHH---HTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----------CCCceEEEEeeccccchhHHHHHhccc---cCccee
Confidence 66689999999987554332 2211 123456666654 55555544444333 455443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.48 E-value=0.58 Score=49.40 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=12.9
Q ss_pred EEEEecCCChHHHH
Q psy6409 768 IIGVAETGSGKTLA 781 (1832)
Q Consensus 768 vIv~apTGSGKTla 781 (1832)
+++.||+|+|||-.
T Consensus 39 l~l~G~~G~GKTHL 52 (213)
T d1l8qa2 39 IFIYGSVGTGKTHL 52 (213)
T ss_dssp EEEECSSSSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 89999999999973
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.86 E-value=1.4 Score=45.79 Aligned_cols=30 Identities=17% Similarity=-0.064 Sum_probs=23.0
Q ss_pred HHHHHHHHhc---CCcEEEEcCCCchHHHHHHH
Q psy6409 1430 QRQAIPIGLQ---NRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1430 Q~~ai~~il~---g~dvii~ApTGSGKTla~~l 1459 (1832)
|.+.+..+.. +.++|+.+|.|+|||..+..
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~ 34 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLE 34 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 6667776664 34799999999999987643
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.45 E-value=0.97 Score=48.50 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=28.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHH
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ll 784 (1832)
+|+++-..+.+.+.|...=- .. ....++|+.||.|+|||.++..
T Consensus 9 ~~~diig~~~~~~~L~~~~~-~~-----------~~~~~lll~Gp~G~GKTt~~~~ 52 (252)
T d1sxje2 9 SLNALSHNEELTNFLKSLSD-QP-----------RDLPHLLLYGPNGTGKKTRCMA 52 (252)
T ss_dssp SGGGCCSCHHHHHHHHTTTT-CT-----------TCCCCEEEECSTTSSHHHHHHT
T ss_pred CHHHccCcHHHHHHHHHHHH-cC-----------CCCCeEEEECCCCCCHHHHHHH
Confidence 57777677777777764310 00 0123599999999999986543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.42 E-value=1.8 Score=46.44 Aligned_cols=17 Identities=24% Similarity=0.131 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
+.+|+.+|+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46999999999999865
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.35 E-value=1.9 Score=46.31 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=15.1
Q ss_pred CCcEEEEecCCCcchhHh
Q psy6409 24 NRDIIGVAETGSGKTLAF 41 (1832)
Q Consensus 24 g~d~~~~a~TGsGKTlaf 41 (1832)
.+.+|+.+|+|+|||+..
T Consensus 40 ~~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 356999999999999754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=84.66 E-value=0.39 Score=56.08 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=30.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCC--cEEEEecCCChHHHHHHHHHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWI 790 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~gr--dvIv~apTGSGKTla~llpil~~i 790 (1832)
+..++.++|+++..+..++ .++... =+|++||||||||.... .++.++
T Consensus 133 ~~~~l~~LG~~~~~~~~l~----------------~l~~~~~GliLvtGpTGSGKSTTl~-~~l~~~ 182 (401)
T d1p9ra_ 133 TRLDLHSLGMTAHNHDNFR----------------RLIKRPHGIILVTGPTGSGKSTTLY-AGLQEL 182 (401)
T ss_dssp TCCCGGGSCCCHHHHHHHH----------------HHHTSSSEEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred cchhhhhhcccHHHHHHHH----------------HHHhhhhceEEEEcCCCCCccHHHH-HHhhhh
Confidence 3456777777765555443 333322 28999999999998633 344443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.54 E-value=0.52 Score=50.23 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
.++|+.||+|+|||.++-
T Consensus 46 ~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999998754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=83.57 E-value=1.2 Score=48.15 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCcccCCCCHHHHHHHHHc--CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1403 RNWKEASLPTEILEIIEKI--GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~--g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
-+|++....+.+.+.|.+. -+.+|..+|.-. +-..+.+++.+|+|+|||+.+
T Consensus 9 ~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 4688887666666555431 011222222110 112367999999999999875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=82.45 E-value=0.42 Score=53.94 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=40.4
Q ss_pred HHHHHHcCCCC---CcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1415 LEIIEKIGYAE---PTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1415 l~~l~~~g~~~---ptpiQ~~ai~~il-~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
+..+...|+.. ..+-+...+..+. .++|+++++|||||||.. +-+++.++ ....+++.|-.+.
T Consensus 137 l~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i------------~~~~rivtiEd~~ 203 (323)
T d1g6oa_ 137 HSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFI------------PKEERIISIEDTE 203 (323)
T ss_dssp HHHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGS------------CTTCCEEEEESSC
T ss_pred hHHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhc------------ccccceeeccchh
Confidence 34445555433 3344555555444 678999999999999985 23333221 2345688888888
Q ss_pred HH
Q psy6409 1491 EL 1492 (1832)
Q Consensus 1491 eL 1492 (1832)
||
T Consensus 204 El 205 (323)
T d1g6oa_ 204 EI 205 (323)
T ss_dssp CC
T ss_pred hh
Confidence 86
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=82.01 E-value=0.59 Score=49.12 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=10.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPL 1461 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpi 1461 (1832)
+++++|||+|||.+..--+
T Consensus 15 i~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEECSCCC----HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5668999999998754333
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.42 E-value=0.3 Score=57.68 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.7
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
..+|+|++||||+|||+.+-
T Consensus 48 ~ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred ccccEEEECCCCCCHHHHHH
Confidence 34799999999999999543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.07 E-value=5.9 Score=42.09 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=15.1
Q ss_pred CcEEEEecCCChHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~ 782 (1832)
.++++.||+|+|||.+.
T Consensus 44 ~~lll~GppGtGKT~l~ 60 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL 60 (276)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=80.07 E-value=0.23 Score=50.51 Aligned_cols=14 Identities=50% Similarity=0.551 Sum_probs=12.9
Q ss_pred EEEEecCCChHHHH
Q psy6409 768 IIGVAETGSGKTLA 781 (1832)
Q Consensus 768 vIv~apTGSGKTla 781 (1832)
++++||+|||||+.
T Consensus 3 i~I~G~~G~GKSTL 16 (178)
T d1ye8a1 3 IIITGEPGVGKTTL 16 (178)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcHHHHH
Confidence 79999999999984
|