Psyllid ID: psy6425


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------
MPTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESGFIR
cccEEEccEEEEcccccccccccccEEEEEEccccEEEEEEEEEEEEEEEcccccccEEEEEEEcccc
ccccccccEEEEcccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEEEEccccc
mpttqveqtitygpyenvppytkanitihyennspfLVVTRLVRQIEVshwgnpknpdndsiesgfir
mpttqveqtitygpyenvPPYTKANITIHYENNSPFLVVTRLVRQIEvshwgnpknpdndsiesgfir
MPTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESGFIR
********TITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHW*****************
*P***VEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESG***
MPTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESGFIR
*****VEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESG***
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oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhii
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MPTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESGFIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query68 2.2.26 [Sep-21-2011]
Q4R4T0 607 Dolichyl-diphosphooligosa N/A N/A 0.823 0.092 0.5 1e-11
Q5RFB6 607 Dolichyl-diphosphooligosa yes N/A 0.823 0.092 0.5 1e-11
P04843 607 Dolichyl-diphosphooligosa yes N/A 0.823 0.092 0.5 1e-11
Q0DJC5 615 Dolichyl-diphosphooligosa yes N/A 0.926 0.102 0.428 2e-11
Q9GMB0 608 Dolichyl-diphosphooligosa yes N/A 0.823 0.092 0.5 2e-11
Q91YQ5 608 Dolichyl-diphosphooligosa yes N/A 0.823 0.092 0.464 3e-11
P07153 605 Dolichyl-diphosphooligosa yes N/A 0.823 0.092 0.464 3e-11
Q9ZUA0 464 Dolichyl-diphosphooligosa yes N/A 0.985 0.144 0.462 3e-11
Q54C27 460 Dolichyl-diphosphooligosa yes N/A 0.764 0.113 0.5 6e-10
B9FDT1 473 Dolichyl-diphosphooligosa no N/A 0.941 0.135 0.406 1e-08
>sp|Q4R4T0|RPN1_MACFA Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=RPN1 PE=2 SV=1 Back     alignment and function desciption
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 4   TQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDN 59
           T+ E  + YGP+ +VP Y++    +HYENNSPFL +T + R IEVSHWGN    +N
Sbjct: 192 TRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEEN 247




Essential subunit of N-oligosaccharyl transferase enzyme which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains.
Macaca fascicularis (taxid: 9541)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 1EC: 9
>sp|Q5RFB6|RPN1_PONAB Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=2 SV=1 Back     alignment and function description
>sp|P04843|RPN1_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Homo sapiens GN=RPN1 PE=1 SV=1 Back     alignment and function description
>sp|Q0DJC5|OST1A_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Oryza sativa subsp. japonica GN=OST1A PE=2 SV=1 Back     alignment and function description
>sp|Q9GMB0|RPN1_PIG Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 SV=1 Back     alignment and function description
>sp|Q91YQ5|RPN1_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1 Back     alignment and function description
>sp|P07153|RPN1_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus GN=Rpn1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUA0|OST1B_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Arabidopsis thaliana GN=OST1B PE=2 SV=1 Back     alignment and function description
>sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Dictyostelium discoideum GN=ost1 PE=2 SV=1 Back     alignment and function description
>sp|B9FDT1|OST1B_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Oryza sativa subsp. japonica GN=OST1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query68
321464273 595 hypothetical protein DAPPUDRAFT_226428 [ 0.764 0.087 0.634 9e-14
115707196 603 PREDICTED: dolichyl-diphosphooligosaccha 0.764 0.086 0.615 9e-13
91095077 459 PREDICTED: similar to olygosaccharyltran 0.897 0.132 0.524 2e-12
169805304 601 ribophorin I [Penaeus monodon] 0.764 0.086 0.596 4e-12
405960099 602 Dolichyl-diphosphooligosaccharide--prote 0.764 0.086 0.615 5e-12
389612736 295 ribophorin, partial [Papilio xuthus] 0.764 0.176 0.615 7e-12
346469193 599 hypothetical protein [Amblyomma maculatu 0.75 0.085 0.627 7e-12
52078488 201 ribophorin [Oxyuranus scutellatus scutel 0.735 0.248 0.6 7e-12
291240752 606 PREDICTED: ribophorin I-like [Saccogloss 0.764 0.085 0.592 8e-12
383848775 608 PREDICTED: dolichyl-diphosphooligosaccha 0.764 0.085 0.576 1e-11
>gi|321464273|gb|EFX75282.1| hypothetical protein DAPPUDRAFT_226428 [Daphnia pulex] Back     alignment and taxonomy information
 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 42/52 (80%)

Query: 2   PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGN 53
           P++Q + TITYGPYEN+ P T+ +I IH+ENN+PFL V  L+R IEVSHWGN
Sbjct: 181 PSSQSDSTITYGPYENIAPLTEVDIVIHFENNAPFLSVANLLRHIEVSHWGN 232




Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115707196|ref|XP_782614.2| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|91095077|ref|XP_972905.1| PREDICTED: similar to olygosaccharyltransferase alpha subunit [Tribolium castaneum] gi|270014775|gb|EFA11223.1| hypothetical protein TcasGA2_TC005188 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|169805304|gb|ACA83751.1| ribophorin I [Penaeus monodon] Back     alignment and taxonomy information
>gi|405960099|gb|EKC26046.1| Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|389612736|dbj|BAM19784.1| ribophorin, partial [Papilio xuthus] Back     alignment and taxonomy information
>gi|346469193|gb|AEO34441.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|52078488|gb|AAU25924.1| ribophorin [Oxyuranus scutellatus scutellatus] Back     alignment and taxonomy information
>gi|291240752|ref|XP_002740264.1| PREDICTED: ribophorin I-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|383848775|ref|XP_003700023.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query68
UNIPROTKB|E1C0F1 601 RPN1 "Dolichyl-diphosphooligos 0.735 0.083 0.54 2.3e-12
ZFIN|ZDB-GENE-030131-4286 598 rpn1 "ribophorin I" [Danio rer 0.735 0.083 0.54 4.8e-12
UNIPROTKB|B7Z4L4 435 RPN1 "Dolichyl-diphosphooligos 0.735 0.114 0.54 1.5e-11
TAIR|locus:2065378 464 AT2G01720 "AT2G01720" [Arabido 0.985 0.144 0.462 1.7e-11
UNIPROTKB|P04843 607 RPN1 "Dolichyl-diphosphooligos 0.735 0.082 0.54 2.8e-11
UNIPROTKB|E2RQ08 607 RPN1 "Uncharacterized protein" 0.735 0.082 0.52 3.6e-11
UNIPROTKB|F1SPG2 608 RPN1 "Dolichyl-diphosphooligos 0.735 0.082 0.54 3.6e-11
UNIPROTKB|Q9GMB0 608 RPN1 "Dolichyl-diphosphooligos 0.735 0.082 0.54 3.6e-11
MGI|MGI:98084 608 Rpn1 "ribophorin I" [Mus muscu 0.691 0.077 0.531 5.8e-11
RGD|3594 605 Rpn1 "ribophorin I" [Rattus no 0.691 0.077 0.531 7.4e-11
UNIPROTKB|E1C0F1 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 27/50 (54%), Positives = 39/50 (78%)

Query:     4 TQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGN 53
             ++ E  I YGP++++PPY++  + +HYENNSPFL +T + R IEVSHWGN
Sbjct:   186 SRTEDMIEYGPFKDIPPYSQDTLKVHYENNSPFLTITSMTRVIEVSHWGN 235




GO:0004579 "dolichyl-diphosphooligosaccharide-protein glycotransferase activity" evidence=IEA
GO:0006486 "protein glycosylation" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IEA
ZFIN|ZDB-GENE-030131-4286 rpn1 "ribophorin I" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z4L4 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2065378 AT2G01720 "AT2G01720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P04843 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ08 RPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPG2 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GMB0 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:98084 Rpn1 "ribophorin I" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3594 Rpn1 "ribophorin I" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query68
pfam04597 429 pfam04597, Ribophorin_I, Ribophorin I 2e-20
>gnl|CDD|218165 pfam04597, Ribophorin_I, Ribophorin I Back     alignment and domain information
 Score = 81.9 bits (203), Expect = 2e-20
 Identities = 32/52 (61%), Positives = 38/52 (73%)

Query: 2   PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGN 53
           P T+   T+TYGPYENVP ++   IT+HYENN P + VT L R IEVSHWGN
Sbjct: 158 PPTRQGNTLTYGPYENVPAFSLEPITVHYENNKPLITVTNLERDIEVSHWGN 209


Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (EC:2.4.1.119). OST catalyzes the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region. Length = 429

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 68
PF04597 432 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ri 99.95
KOG2291|consensus 602 99.95
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2 Back     alignment and domain information
Probab=99.95  E-value=4.2e-28  Score=181.89  Aligned_cols=67  Identities=49%  Similarity=0.900  Sum_probs=64.9

Q ss_pred             CceeecCeEEEcccCcCCCCCcccEEEEEecCCCceEEeEEEEEEEEeccccceeeeEEEeEEcccC
Q psy6425           2 PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGNPKNPDNDSIESGFIR   68 (68)
Q Consensus         2 ~~~~~g~~i~yGP~~~v~p~t~~p~~VhYe~n~P~~~v~~L~R~IeVSHWgni~veE~y~l~n~~~~   68 (68)
                      |.+++|++|+||||+|++||+.+|++||||||.||++|++|+|+|||||||||||||+|+|+|.+|+
T Consensus       161 ~~~~~~~~i~yGP~~~v~p~~~~~~~vhye~n~P~~~v~~l~R~IeVSHWgni~veE~y~l~N~GA~  227 (432)
T PF04597_consen  161 PPKKKGNTITYGPYENVPPFSSQPLSVHYENNAPFLTVTSLERDIEVSHWGNIAVEEYYELRNDGAK  227 (432)
T ss_pred             CceecCCeEEeccccccCCCCcccEEEEEECCCCceEEEEEEEEEEEcCCccEEEEEEEEEEEcCcc
Confidence            6789999999999999999999999999999999999999999999999999999999999999874



4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG2291|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00