Psyllid ID: psy6461
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 703 | 2.2.26 [Sep-21-2011] | |||||||
| Q9HCS7 | 855 | Pre-mRNA-splicing factor | yes | N/A | 0.960 | 0.789 | 0.661 | 0.0 | |
| Q9DCD2 | 855 | Pre-mRNA-splicing factor | yes | N/A | 0.960 | 0.789 | 0.661 | 0.0 | |
| Q99PK0 | 855 | Pre-mRNA-splicing factor | yes | N/A | 0.960 | 0.789 | 0.661 | 0.0 | |
| Q54Z08 | 850 | Pre-mRNA-splicing factor | yes | N/A | 0.965 | 0.798 | 0.479 | 0.0 | |
| Q4WVF4 | 839 | Pre-mRNA-splicing factor | yes | N/A | 0.970 | 0.812 | 0.492 | 0.0 | |
| Q7SAK5 | 829 | Pre-mRNA-splicing factor | N/A | N/A | 0.968 | 0.821 | 0.493 | 0.0 | |
| Q52DF3 | 832 | Pre-mRNA-splicing factor | N/A | N/A | 0.970 | 0.819 | 0.493 | 0.0 | |
| Q5BH69 | 851 | Pre-mRNA-splicing factor | yes | N/A | 0.970 | 0.801 | 0.474 | 0.0 | |
| Q9P7R9 | 790 | Pre-mRNA-splicing factor | yes | N/A | 0.967 | 0.860 | 0.431 | 1e-177 | |
| P0CO08 | 1031 | Pre-mRNA-splicing factor | yes | N/A | 0.672 | 0.458 | 0.483 | 1e-142 |
| >sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/714 (66%), Positives = 557/714 (78%), Gaps = 39/714 (5%)
Query: 24 ILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVI 83
I+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK RR QVK + +
Sbjct: 28 IMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCV 87
Query: 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR 143
TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALRALPITQH R
Sbjct: 88 TDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSR 147
Query: 144 VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKE 203
+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA +LA +VN E
Sbjct: 148 IWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDE 207
Query: 204 SFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI 263
FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG LW SLADYYI
Sbjct: 208 RFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYI 267
Query: 264 RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323
RSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E EEDD++
Sbjct: 268 RSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGR-EEEDDVD 326
Query: 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVD 383
LELRLAR E L+ RR LLLNSVLLRQNPH+V EWHKRV L G+P +II TYTEAV+TVD
Sbjct: 327 LELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVD 386
Query: 384 PKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443
P A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC+ ELELR
Sbjct: 387 PFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRH 446
Query: 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGT------- 496
+ ALRL+ +ATA PAR Y D +E VQ RVYKS+K+WS+ ADLEES GT
Sbjct: 447 ENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAV 506
Query: 497 -------------------------------FKAYEKGIALFKWPYIFDIWNTYLTKFLS 525
FKAYE+GI+LFKWP + DIW+TYLTKF++
Sbjct: 507 YDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIA 566
Query: 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585
RYGG KLERARDLFEQ L+ CPP+YAKTLYLLYA+LEEE GLARHAMAVYERAT AV P
Sbjct: 567 RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPA 626
Query: 586 EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645
+ ++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARA
Sbjct: 627 QQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARA 686
Query: 646 IYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
IY+ CSQICDPR T FW WK FE+ HGNEDT++EMLRI+RSVQA YNTQV F
Sbjct: 687 IYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQVNF 740
|
Involved in transcription-coupled repair (TCR), transcription and pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q9DCD2|SYF1_MOUSE Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/714 (66%), Positives = 557/714 (78%), Gaps = 39/714 (5%)
Query: 24 ILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVI 83
I+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK RR QVK + +
Sbjct: 28 IMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCV 87
Query: 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR 143
TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALRALPITQH R
Sbjct: 88 TDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSR 147
Query: 144 VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKE 203
+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA +LA +VN E
Sbjct: 148 IWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDE 207
Query: 204 SFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI 263
FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG LW SLADYYI
Sbjct: 208 RFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYI 267
Query: 264 RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323
RSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E EEDD++
Sbjct: 268 RSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGR-EEEDDVD 326
Query: 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVD 383
LELRLAR E L+ RR LLLNSVLLRQNPH+V EWHKRV L G+P +II TYTEAV+TVD
Sbjct: 327 LELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVD 386
Query: 384 PKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443
P A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC+ ELELR
Sbjct: 387 PFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRH 446
Query: 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGT------- 496
+ AL+L+ +ATA PAR Y D +E VQ RVYKS+K+WS+ ADLEES GT
Sbjct: 447 ENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAV 506
Query: 497 -------------------------------FKAYEKGIALFKWPYIFDIWNTYLTKFLS 525
FKAYE+GI+LFKWP + DIW+TYLTKF+S
Sbjct: 507 YDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIS 566
Query: 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585
RYGG KLERARDLFEQ L+ CPP+YAKTLYLLYA+LEEE GLARHAMAVY+RAT AV P
Sbjct: 567 RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPA 626
Query: 586 EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645
+ ++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARA
Sbjct: 627 QQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARA 686
Query: 646 IYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
IY+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 687 IYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
|
Involved in transcription-coupled repair (TCR), transcription and pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|Q99PK0|SYF1_RAT Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/714 (66%), Positives = 557/714 (78%), Gaps = 39/714 (5%)
Query: 24 ILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVI 83
I+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK RR QVK + +
Sbjct: 28 IMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCV 87
Query: 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR 143
TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALRALPITQH R
Sbjct: 88 TDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSR 147
Query: 144 VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKE 203
+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA +LA +VN E
Sbjct: 148 IWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDE 207
Query: 204 SFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI 263
FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG LW SLADYYI
Sbjct: 208 RFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYI 267
Query: 264 RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323
RSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E EEDD++
Sbjct: 268 RSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGR-EEEDDVD 326
Query: 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVD 383
LELRLAR E L+ RR LLLNSVLLRQNPH+V EWHKRV L G+P +II TYTEAV+TVD
Sbjct: 327 LELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVD 386
Query: 384 PKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443
P A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC+ ELELR
Sbjct: 387 PFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRH 446
Query: 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGT------- 496
+ AL+L+ +ATA PAR Y D +E VQ RVYKS+K+WS+ ADLEES GT
Sbjct: 447 ENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAV 506
Query: 497 -------------------------------FKAYEKGIALFKWPYIFDIWNTYLTKFLS 525
FKAYE+GI+LFKWP + DIW+TYLTKF+S
Sbjct: 507 YDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIS 566
Query: 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585
RYGG KLERARDLFEQ L+ CPP+YAKTLYLLYA+LEEE GLARHAMAVY+RAT AV P
Sbjct: 567 RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPA 626
Query: 586 EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645
+ ++MFNIYIK+AAEIYG+ TR IY++AIE L +E R+MCL+FA+ME KLGEIDRARA
Sbjct: 627 QQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARA 686
Query: 646 IYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
IY+ CSQICDPR T FW WK FE+ HGNEDT+REMLRI+RSVQA YNTQV F
Sbjct: 687 IYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF 740
|
Involved in transcription-coupled repair (TCR), transcription and pre-mRNA splicing. Rattus norvegicus (taxid: 10116) |
| >sp|Q54Z08|SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/723 (47%), Positives = 492/723 (68%), Gaps = 44/723 (6%)
Query: 16 EDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
+DLPYEE++ +NP+SV WLRY+E K+ +P+ N IYER+++ELP SYK+W+ YL R
Sbjct: 30 DDLPYEEDVSKNPYSVNCWLRYLEFKQGSPQKQRNYIYERAIRELPRSYKIWHQYLLERT 89
Query: 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135
++GK I + S+E VN FERSLVF+ KMPRIW++Y FLM Q KIT TR FDRAL A
Sbjct: 90 LAIRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIA 149
Query: 136 LPITQHHRVWPLYLSFVKSHAVPE-TAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
LP+TQH+R+W Y F+ ++P T +RV++RYLK+ PE E+YIEYL I+ E
Sbjct: 150 LPVTQHYRIWNEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIKEWQEVVN 209
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+L +++ F S GKS H W +LCE++S P +I ++VD++IR G+ +++DQ+G L
Sbjct: 210 QLIKLLDNVKFKSIKGKSRHDHWLQLCEILSSYPKQITGVDVDSVIRSGIGKFSDQIGKL 269
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W L+DYYI+ FE+ARDI+EEA+ +V T RDF+ ++++Y QFE+ SL +EI E D
Sbjct: 270 WCYLSDYYIQLAQFEKARDIFEEALTSVGTARDFSFIWESYTQFED-SLIAAKQEILEED 328
Query: 315 TPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLD---I 371
PSE++ +E ++ + R E+L++R+ LLLNSV+L+QNP+NV EW KRV L+ + I
Sbjct: 329 -PSEDNLLEFDIIIERYENLIQRQPLLLNSVMLKQNPNNVQEWLKRVNLYSNPTPNVKMI 387
Query: 372 IRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431
I+T+T+++K++DP+LA GKL T++ F FYE N++L ARLIF+ + V + ++DL+T
Sbjct: 388 IQTFTDSIKSIDPQLAKGKLSTIYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLST 447
Query: 432 VWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLE 491
++C++AE+EL+ E A+ ++ R T +P + +E E VQ R++KSIK+W+ Y DLE
Sbjct: 448 LYCDYAEMELKHRNYEKAIEILKRGTVSPKKQNTIIEENEPVQKRLFKSIKIWTFYVDLE 507
Query: 492 ESFGT--------------------------------------FKAYEKGIALFKWPYIF 513
ESFGT FKAYE G+ LF +P++
Sbjct: 508 ESFGTFHNTKSIYEKMIQLKVVTPQIILNFAKYLEENKYFEDMFKAYEHGVQLFLFPHVQ 567
Query: 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573
DIW TYLTKF+ RY G KLER RDLFEQ L PP+ + YL+YA EE++GLARH+MA
Sbjct: 568 DIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANFEEQYGLARHSMA 627
Query: 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEM 633
VY+RA +V E+ F+M+ +YI +A+E +G+ +TR+I+ +AIE LP++ R MCLKFA+M
Sbjct: 628 VYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQLPDQYVRDMCLKFADM 687
Query: 634 ETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693
E K GEIDRAR+IY H SQ DPR + +W W FE HGNEDT +EMLRI+RSVQA Y
Sbjct: 688 EKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTWSDFEKLHGNEDTFKEMLRIRRSVQASY 747
Query: 694 NTQ 696
TQ
Sbjct: 748 ITQ 750
|
Involved in transcription-coupled repair (TCR), transcription and pre-mRNA splicing. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q4WVF4|SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/735 (49%), Positives = 477/735 (64%), Gaps = 53/735 (7%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
++D YE+++ R P S+K WL YIE+K+ N + ER+ K+LP SYKLW YL+
Sbjct: 16 DQDTVYEQDLFRAPGSIKPWLAYIEYKQQNGTLYEQAFVMERACKQLPRSYKLWKMYLEF 75
Query: 74 RRKQVKGKVITD--PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131
R ++G+ T Y+ VN FER+L+ ++KMP+IW Y FL+ Q +TQTR FDR
Sbjct: 76 RINHLRGRNATKYRAEYQKVNALFERALILLNKMPKIWEMYLSFLLQQPLVTQTRRTFDR 135
Query: 132 ALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE 191
ALRALPITQH+R+W LY +F +S A +TAV+++ RY+++ PE+AEDYIE L + + E
Sbjct: 136 ALRALPITQHNRIWKLYKAFARS-ASGQTAVKIWARYMQIHPENAEDYIELLVELGQYTE 194
Query: 192 AAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRS-----LNVDAIIRGGLRR 246
A + I++ F SK GKSN QLW E+ +++ +IR+ ++VDAI+R G+ R
Sbjct: 195 AVKRYMEILDDPRFQSKKGKSNFQLWTEMVDLLVSKAKQIRTGPQVGIDVDAILRSGIDR 254
Query: 247 YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR 306
+ DQ G LW LA Y+I G FE+ARD++EE I TV TVRDFT +FDAY +FEE +
Sbjct: 255 FADQRGKLWAGLATYWITKGNFEKARDVFEEGITTVMTVRDFTLIFDAYVEFEESIIGSL 314
Query: 307 MEEIA---ENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL 363
ME A + E+ D +L+LR+ R E LM+RR L+N VLLRQNP+NV+EW KRV L
Sbjct: 315 MEAAAVRADKGNVDEDADFDLDLRMLRFEQLMDRRPFLVNDVLLRQNPNNVIEWEKRVAL 374
Query: 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423
+ +I+ TYT A+ ++PK A GK LW+ + KFYE L+ AR+IFDKA VP+
Sbjct: 375 WGDNKEEIVNTYTAAIAAINPKKAHGKFSELWVNYAKFYESGGDLDTARVIFDKAVKVPF 434
Query: 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP-VAYHDEAETVQARVYKSIK 482
V +LA WCEWAE+ELR+ + A+ +MA+AT P + V Y DE + Q RV+KS K
Sbjct: 435 KSVAELADTWCEWAEMELRSENFDKAVDIMAKATQAPKKSTVDYFDETLSPQQRVHKSWK 494
Query: 483 LWSLYADLEESFGT--------------------------------------FKAYEKGI 504
LWS Y DL ES T FK YE+G+
Sbjct: 495 LWSFYVDLVESVATLEETRKVYERIFELRIATPQTVVNYANLLEEHKYFEDSFKVYERGL 554
Query: 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE 564
LF +P F++WN YLTK + R G +ER RDLFEQ L+ CPP++AK LYL+Y LEEE
Sbjct: 555 DLFSYPVAFELWNLYLTKAVDRKIG--IERLRDLFEQALDGCPPKFAKPLYLMYGNLEEE 612
Query: 565 HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624
GLARHAM +YERAT AV E+ FEMF YI K+A +G+ TR IYERAI +LP++ +
Sbjct: 613 RGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLTSTRPIYERAIAALPDQEAK 672
Query: 625 QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684
+MCLKFA+ME +LGEIDRARAIY H SQ CDPR AGFW W++FE+ HGNEDT +EMLR
Sbjct: 673 EMCLKFADMERRLGEIDRARAIYGHASQFCDPRTNAGFWQKWEAFEVQHGNEDTFKEMLR 732
Query: 685 IKRSVQAQYNTQVLF 699
IKRSVQAQYNT V F
Sbjct: 733 IKRSVQAQYNTDVNF 747
|
Involved in pre-mRNA splicing and cell cycle progression. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) |
| >sp|Q7SAK5|SYF1_NEUCR Pre-mRNA-splicing factor syf-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=syf-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/738 (49%), Positives = 470/738 (63%), Gaps = 57/738 (7%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINT---IYERSLKELPGSYKLWYNY 70
+EED PYE++I+RNP S K WL YIE+K K + I ER+ +LP SYKLW Y
Sbjct: 18 SEEDFPYEQDIVRNPGSTKPWLAYIEYKLQ--KGTVQEQAYIMERACVQLPRSYKLWKMY 75
Query: 71 LKLRRKQVK--GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHV 128
L+ R K V I Y+ VN+ FER+L+ ++KMPRIW Y +FLM Q +T TR
Sbjct: 76 LRFRTKHVSKLNAAIFASEYQKVNSLFERALILLNKMPRIWEMYLKFLMQQPLVTHTRRT 135
Query: 129 FDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188
FDRALRALPITQH+R+W LY F S A ETAV+++RRY+++ PEDAED+IE L ++
Sbjct: 136 FDRALRALPITQHNRIWALYRPFANS-AEGETAVKIWRRYMQVHPEDAEDFIELLVAVGL 194
Query: 189 LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRS-----LNVDAIIRGG 243
EA K I+N F SK+ K +++LW+E+ +++ ++ + + ++V+ IIR G
Sbjct: 195 YTEAVHKYIEILNNPRFTSKNSKGHYELWSEMVDLLVEHATAVETGHETGIDVERIIRSG 254
Query: 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303
+ R+ DQ G LW LA Y+IR G FERARD++EE I TV TVRDFT VFD+Y +FEE +
Sbjct: 255 IERFADQRGKLWCGLATYWIRRGSFERARDVFEEGITTVMTVRDFTLVFDSYTEFEESII 314
Query: 304 NKRMEEI---AENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKR 360
+ ME AE E D +L++R+ R E LM+RR LLN VLLRQNP+NV EW KR
Sbjct: 315 SALMEMASTRAEKGEVDEVADFDLDIRMMRFEHLMDRRPFLLNDVLLRQNPNNVTEWEKR 374
Query: 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420
V L+ ++++TY +A++ + PK AVG LH LW + KFYE L AR I +KA
Sbjct: 375 VALWGDNKEEVVKTYLDAIEAIQPKKAVGALHQLWTNYAKFYEAGGDLSSARRIMEKAVK 434
Query: 421 VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP-VAYHDEAETVQARVYK 479
VPY V +LA +W EWAE+ELR + A+++MA+A P R V Y DE + Q RV+K
Sbjct: 435 VPYKSVAELADMWIEWAEMELRNECFDEAMKVMAKAVQAPKRSTVDYFDETLSPQQRVHK 494
Query: 480 SIKLWSLYADLEESFG--------------------------------------TFKAYE 501
S KLWS Y DL ES +FK YE
Sbjct: 495 SWKLWSFYVDLVESVSSLDETRKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKIYE 554
Query: 502 KGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKL 561
+G+ LF +P F++WN YLTK + R +ER RDLFEQ +E CPP++AK +YL+Y L
Sbjct: 555 RGLDLFSYPVAFELWNLYLTKAVDR--KISIERLRDLFEQAVEDCPPKFAKVIYLMYGNL 612
Query: 562 EEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621
EEE GLARHAM +YERAT AV E+ +MFN YI K+A +G+P TR IYERAI +LP+
Sbjct: 613 EEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLPSTRPIYERAIAALPDA 672
Query: 622 PTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMRE 681
R MCLKFA+ME +LGEIDRARAIY H SQ CDPR GFW W FE+ HGNEDT +E
Sbjct: 673 EARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPGFWTKWDQFEVQHGNEDTYKE 732
Query: 682 MLRIKRSVQAQYNTQVLF 699
MLRIKRSVQAQYNT V F
Sbjct: 733 MLRIKRSVQAQYNTDVNF 750
|
Involved in pre-mRNA splicing and cell cycle progression. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q52DF3|SYF1_MAGO7 Pre-mRNA-splicing factor SYF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SYF1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/735 (49%), Positives = 467/735 (63%), Gaps = 53/735 (7%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHK-KNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
++D YE++I R+P S K WL YI +K ++ + ER+ +LP SYKLW YL
Sbjct: 22 DDDFVYEQDIQRSPGSTKPWLAYISYKIQHGTVEEQAFVLERACMQLPRSYKLWKMYLTF 81
Query: 74 RRKQVK--GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131
R K + I Y VN+ FER+L+ ++KMPRIW Y +FLM Q +T TR FDR
Sbjct: 82 RTKHIAKLNAAIFAAEYRKVNSLFERALILLNKMPRIWEMYLKFLMKQPLVTLTRRTFDR 141
Query: 132 ALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE 191
ALRALPITQH+R+W LY F S A P TAV+++RRY+++ PEDAED+IE L + E
Sbjct: 142 ALRALPITQHNRIWALYRPFANSAAGP-TAVKIWRRYMQVHPEDAEDFIELLYQVGYYTE 200
Query: 192 AAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRS-----LNVDAIIRGGLRR 246
AA K ++N F SKHGK + +LW+E+ E++ ++ ++ + ++V+ IIR G+ R
Sbjct: 201 AAKKYIDVLNNPRFTSKHGKGHFELWSEMVELLVEHATEVEAGYETGIDVERIIRSGIER 260
Query: 247 YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKR 306
+ DQ G LW LA Y+IR G FERARD++EE I TV TVRDFT VFD+YA+FEE +
Sbjct: 261 FADQRGKLWVGLATYWIRRGSFERARDVFEEGITTVMTVRDFTLVFDSYAEFEESVIGAM 320
Query: 307 ME---EIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL 363
ME + AE E D +L++R+ R E LM+RR LLN VLLRQNP+NV EW KRV L
Sbjct: 321 MEVAGQRAEKGVVDEAADFDLDIRMMRFEHLMDRRPFLLNDVLLRQNPNNVNEWEKRVAL 380
Query: 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423
+ +++ TYT A+ V PK A G H LW + KFYE L AR+I +KA VP+
Sbjct: 381 WGDNHNEVVNTYTNAIAAVQPKKASGPFHQLWANYAKFYERGGDLRSARIIMEKAVKVPF 440
Query: 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP-VAYHDEAETVQARVYKSIK 482
V +LA +W EWAE+ELR E A+R+MA+A P R V Y DE T Q RV+KS K
Sbjct: 441 KSVVELADMWIEWAEMELRNDNFEEAVRIMAKAVQAPKRSTVDYFDETLTPQQRVHKSWK 500
Query: 483 LWSLYADLEESFGT--------------------------------------FKAYEKGI 504
LWS Y DL ES GT FK YE+G+
Sbjct: 501 LWSFYVDLVESVGTLEDTKKVYERIFELRIATPQTVVNYANLLEEHKYYEESFKIYERGL 560
Query: 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE 564
LF +P F++WN YLTK + R +ER RDLFEQ +E CPP++AK +YL+Y LEEE
Sbjct: 561 DLFSYPVAFELWNMYLTKAVDR--KISIERLRDLFEQAVEGCPPKFAKIIYLMYGNLEEE 618
Query: 565 HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624
GLARHAM +YERAT AV E+ +MFN YI K+A +G+P TRQIYERAI +LP++ R
Sbjct: 619 RGLARHAMRIYERATRAVSDEDRADMFNFYITKSASNFGLPSTRQIYERAIAALPDDEAR 678
Query: 625 QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684
MCLKFA+ME +LGEIDRARAIY H SQ CDPR T FW W+ FE+ HGNEDT +EMLR
Sbjct: 679 DMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTTPAFWTKWEQFEVQHGNEDTFKEMLR 738
Query: 685 IKRSVQAQYNTQVLF 699
IKR+VQA+YNT V F
Sbjct: 739 IKRAVQAKYNTDVNF 753
|
Involved in pre-mRNA splicing and cell cycle progression. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) |
| >sp|Q5BH69|SYF1_EMENI Pre-mRNA-splicing factor syf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/752 (47%), Positives = 480/752 (63%), Gaps = 70/752 (9%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPK----------------AIIN--TIYERS 56
+ D YE+++LRNP ++K WL YIE+K+ +I+N + ER+
Sbjct: 16 DNDSVYEQDLLRNPGTIKPWLAYIEYKQQNGTLYEQAFVGRPLDALIISILNDFQVMERA 75
Query: 57 LKELPGSYKLWYNYLKLRRKQVKGK--VITDPSYEDVNNTFERSLVFMHKMPRIWLDYGR 114
K+LP SYKLW YL+ R K +K + + ++ VN FER+L+ ++KMPRIW Y
Sbjct: 76 CKQLPRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERALILLNKMPRIWEMYLT 135
Query: 115 FLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174
F++ Q +TQTR FDRALRALP+TQH+R+W LY +F +S A +TAV+++ RY+++ PE
Sbjct: 136 FMLQQPLVTQTRRTFDRALRALPVTQHNRIWKLYKTFARS-ASGQTAVKIWARYMQIHPE 194
Query: 175 DAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRS- 233
+AE+YI L + +A + I++ F S+ GKSN QLW E+ +++ KI +
Sbjct: 195 NAEEYINLLVEMGHYTDAIKRYMEILDNPRFQSREGKSNFQLWTEMVDLLVSKAKKIETG 254
Query: 234 ----LNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFT 289
++VDAI+R G+ R+ DQ G LW LA Y+I G FE+ARD++EE I TV TVRDFT
Sbjct: 255 PQTGIDVDAILRSGIDRFADQRGKLWAGLATYWITKGNFEKARDVFEEGITTVMTVRDFT 314
Query: 290 QVFDAYAQFEELSLNKRMEEIA---ENDTPSEEDDIELELRLARLEDLMERRLLLLNSVL 346
+FD+Y +FEE + ME A +N EE D +L+LR+ R E LM+RR L+N VL
Sbjct: 315 LIFDSYVEFEESIIGSLMEAAAVRADNGKADEEADFDLDLRMLRFEQLMDRRPFLVNDVL 374
Query: 347 LRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND 406
LRQNP+NV+EW KRV L+ ++I+ TYT A+ ++PK AVGK LW+ + KFYE
Sbjct: 375 LRQNPNNVIEWEKRVALWGDNNVEIVNTYTAAIAAINPKKAVGKFSELWVNYAKFYERGG 434
Query: 407 QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP-VA 465
L+ AR+IF+KA VP+ V +LA WCEWAE+ELR+ + A+ +MA+AT P + V
Sbjct: 435 DLDTARIIFEKAVKVPFKSVNELAETWCEWAEMELRSENFDKAVEIMAKATQAPKKSTVD 494
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGT----------------------------- 496
Y DE + Q R++KS KLWS Y DL ES +
Sbjct: 495 YFDETLSPQQRIHKSWKLWSFYVDLVESVSSIEETKKVYERIFELRIATPQTVVNYANLL 554
Query: 497 ---------FKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP 547
FK YE+G+ LF +P F++WN YLTK + R G +ER RDLFEQ L+ CP
Sbjct: 555 EEHKYFEESFKVYERGLDLFTYPVAFELWNLYLTKAVDRKIG--IERLRDLFEQALDGCP 612
Query: 548 PRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKT 607
P++A+ LYL+Y LEEE GLARHAM +YERAT AV E+ FEMF YI K+A +G+P T
Sbjct: 613 PKFARPLYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLPST 672
Query: 608 RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWK 667
R IYERAI +LP+ ++MCLKFAEME +LGEIDRARAIY H SQ CDPR A FW W+
Sbjct: 673 RPIYERAIAALPDHEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRTNAPFWQKWE 732
Query: 668 SFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
+FE+ HGNEDT +EMLRIKRSVQAQYNT V F
Sbjct: 733 AFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNF 764
|
Involved in pre-mRNA splicing and cell cycle progression. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|Q9P7R9|SYF1_SCHPO Pre-mRNA-splicing factor cwf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 314/727 (43%), Positives = 462/727 (63%), Gaps = 47/727 (6%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
N +D P+E E+LR+P+S+K WLRYI+ + + ++ER+ ELPGSYK+W +YL+L
Sbjct: 15 NVDDEPFELELLRDPYSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGSYKIWKSYLEL 74
Query: 74 RRKQVK--GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131
R V+ ++ VN+ FERSL+ +HKMP IW Y +FLM Q +T+ R F+
Sbjct: 75 RVAHVEHLNPYFHAEAFASVNDCFERSLILLHKMPVIWKLYLQFLMKQPNVTKIRCTFNS 134
Query: 132 ALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDE 191
ALRALP+TQH +W ++ + + + V+RRY+++ P E+YIE L + +E
Sbjct: 135 ALRALPVTQHDDIWDMFTKYAEDIG-GLFCIHVYRRYIQVEPRAIENYIEILCKLGLWNE 193
Query: 192 AAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251
AA + I+N+ F+S KSN+Q+W E E++ Q+PD ++++V+ + R G++R++DQ
Sbjct: 194 AARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEKVFRAGIKRFSDQA 253
Query: 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIA 311
G LW LA YYIR G +E+AR + E + + TVR+FT +FDA+ +FEE L+ R+E +
Sbjct: 254 GKLWTYLAQYYIRIGDYEKARSTFYEGMNNIMTVRNFTIIFDAFVEFEEQWLSARVEASS 313
Query: 312 ENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDI 371
N D++ ++ +A LE ++++R L +N VLLRQN +NV EW +RV+ + +
Sbjct: 314 GNAN----DELSIDFHMAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVKFLEDDSEKV 369
Query: 372 IRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431
++ YT+A+K V+PKLA G L L+ EF +FYE D LE +R+IF+KAT VPY V +LA
Sbjct: 370 VQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVPYKTVNELAQ 429
Query: 432 VWCEWAELELRAGQEEAALRLMARATATPARP-VAYHDEAETVQARVYKSIKLWSLYADL 490
VW +WAE+ELR +AA +L+ A P + +++ DE+ + Q R++KS K+W Y DL
Sbjct: 430 VWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLSPQVRLHKSSKIWMYYLDL 489
Query: 491 EESFGT--------------------------------------FKAYEKGIALFKWPYI 512
EES GT FK YE+G+ALF +P
Sbjct: 490 EESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVA 549
Query: 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572
F++WN YLTKF+ RY GT +ER RDLFEQ LE CPP ++K++YLLYA EE+ G A+ ++
Sbjct: 550 FELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSI 609
Query: 573 AVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAE 632
++ E+A V + ++N+ + K A YG+ TR +YE+AIESL + + MCL+FAE
Sbjct: 610 SILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKAIESLSDSEVKDMCLRFAE 669
Query: 633 METKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN-EDTMREMLRIKRSVQA 691
METKLGEIDRAR IY H SQ CDPRV +W AW+ FEI +GN E+T++EMLRIKRSVQ
Sbjct: 670 METKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPEETVKEMLRIKRSVQT 729
Query: 692 QYNTQVL 698
+++T L
Sbjct: 730 KFSTDSL 736
|
Involved in pre-mRNA splicing and cell cycle progression. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P0CO08|SYF1_CRYNJ Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SYF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/531 (48%), Positives = 335/531 (63%), Gaps = 58/531 (10%)
Query: 227 NPDKIRSLNVDAII-RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285
+P R L+V+ I+ R GL+ Y DQ G LW LA Y+I+ G FERA +E + V T+
Sbjct: 412 DPSNPRLLDVEGIVERDGLQVYKDQAGRLWTGLATYWIKRGEFERATATFERGLAAVVTI 471
Query: 286 RDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEED------DIELELRLARLEDLMERRL 339
RDFTQ+FDAYA+F E ++ M+ +A+ D +ED + EL+ R+ E+LM+RR
Sbjct: 472 RDFTQIFDAYAEFSETMISTLMDALADEDNLEDEDFDAEETEQELDERMKSFEELMDRRP 531
Query: 340 LLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFG 399
L+N VLLR+NP+ V+EW KR+ L ++ Y +A+ T++P+ A G L+ L++ F
Sbjct: 532 FLVNDVLLRRNPNEVVEWEKRIALHGDDDAKVVEAYVKALDTINPRKATGPLYPLYVNFA 591
Query: 400 KFYEVNDQ------------LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447
KFYE LE AR IF++AT VP+ V++LA VWCEWAE+ELR E
Sbjct: 592 KFYEEGGSKDDNGEPRNEPDLEQARKIFERATKVPFKAVDELAEVWCEWAEMELRNENYE 651
Query: 448 AALRLMARATATPARP-VAYHDEAETVQARVYKSIKLWSLYADLEESFGT---------- 496
A+RLM RAT P + Y+D+ Q+R++KS+KLWS Y+DLEES GT
Sbjct: 652 EAIRLMQRATTVPKNTKINYYDDNIPPQSRLFKSLKLWSYYSDLEESIGTVESTKAVYDK 711
Query: 497 ----------------------------FKAYEKGIALFKWPYIFDIWNTYLTKFLSRYG 528
FK YE+GI LF +P F+IWN YL+KF+ RYG
Sbjct: 712 IMELKIANAQVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSKFVKRYG 771
Query: 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588
G KLERARDLFEQ LE CP ++ K LYL+YAKLEEEHGLA+ AM +Y+RA V + F
Sbjct: 772 GKKLERARDLFEQALENCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDSDKF 831
Query: 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYA 648
EM+ IYI KA +G+P TR IYERA+ESLP++ T +MC +FA ME KLGEIDRARAIYA
Sbjct: 832 EMYTIYIAKATANFGLPATRPIYERALESLPDKQTAEMCRRFARMERKLGEIDRARAIYA 891
Query: 649 HCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699
H SQ CDPR+ FW W FEI G+EDT REMLRIKR+VQA +NT+ F
Sbjct: 892 HASQFCDPRIEPEFWQEWNDFEIETGSEDTFREMLRIKRAVQASFNTETSF 942
|
Involved in pre-mRNA splicing and cell cycle progression. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 703 | ||||||
| 91092544 | 857 | PREDICTED: similar to XPA-binding protei | 0.971 | 0.796 | 0.750 | 0.0 | |
| 340711773 | 839 | PREDICTED: pre-mRNA-splicing factor SYF1 | 0.970 | 0.812 | 0.757 | 0.0 | |
| 350402452 | 839 | PREDICTED: pre-mRNA-splicing factor SYF1 | 0.970 | 0.812 | 0.757 | 0.0 | |
| 345492136 | 851 | PREDICTED: pre-mRNA-splicing factor SYF1 | 0.975 | 0.806 | 0.730 | 0.0 | |
| 380030166 | 837 | PREDICTED: pre-mRNA-splicing factor SYF1 | 0.970 | 0.814 | 0.754 | 0.0 | |
| 66554055 | 836 | PREDICTED: pre-mRNA-splicing factor SYF1 | 0.970 | 0.815 | 0.753 | 0.0 | |
| 242024076 | 858 | XPA-binding protein, putative [Pediculus | 0.972 | 0.797 | 0.749 | 0.0 | |
| 383856988 | 842 | PREDICTED: pre-mRNA-splicing factor SYF1 | 0.970 | 0.809 | 0.753 | 0.0 | |
| 332018615 | 910 | Pre-mRNA-splicing factor SYF1 [Acromyrme | 0.975 | 0.753 | 0.745 | 0.0 | |
| 195381577 | 884 | GJ21637 [Drosophila virilis] gi|19414432 | 0.972 | 0.773 | 0.731 | 0.0 |
| >gi|91092544|ref|XP_968085.1| PREDICTED: similar to XPA-binding protein 2 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/721 (75%), Positives = 616/721 (85%), Gaps = 38/721 (5%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
+EDLPYEEEILRNP+SVKHWLRYIEHKK APK +N IYER+LKELPGSYKLWYNYL+ R
Sbjct: 20 DEDLPYEEEILRNPYSVKHWLRYIEHKKKAPKHGVNIIYERALKELPGSYKLWYNYLRTR 79
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + ITDP++E+VNN FERSLVFMHKMPRIW+DY FL DQ KIT+TR VFDRALR
Sbjct: 80 RLQVKNRCITDPAFEEVNNAFERSLVFMHKMPRIWMDYCSFLTDQCKITRTRKVFDRALR 139
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALP+TQHHR+WPLYL+FVK H + ETAVR+FRRYLKL PE+AE+Y+EYL+ + RLDEAAV
Sbjct: 140 ALPVTQHHRIWPLYLTFVKKHDISETAVRIFRRYLKLSPENAEEYVEYLTEVGRLDEAAV 199
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
LA IVN E+FVS+HGKS HQLWNELCE+IS+NP+++ SLNVDAIIRGGLRRYTDQLGHL
Sbjct: 200 VLAKIVNDENFVSQHGKSKHQLWNELCELISKNPEEVHSLNVDAIIRGGLRRYTDQLGHL 259
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
WNSLA YY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEEL+L+KRMEE+A+
Sbjct: 260 WNSLATYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELTLSKRMEEVAQKP 319
Query: 315 TPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRT 374
+E+DDIELELRLAR E+LMERRLLLLNSVLLRQNPHNV EWHKRV+L++GKP +II T
Sbjct: 320 NQTEDDDIELELRLARFENLMERRLLLLNSVLLRQNPHNVQEWHKRVQLYEGKPHEIINT 379
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDPKLAVGKLHTLW+EF KFYE N Q+EDARLIF+KAT V Y KV+DLATVWC
Sbjct: 380 YTEAVQTVDPKLAVGKLHTLWVEFAKFYETNKQIEDARLIFEKATQVAYVKVDDLATVWC 439
Query: 435 EWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494
EWAE+E+R E AL+LM RA+ P+R VAYHD+ ETVQAR+YKS+K+WS+ ADLEESF
Sbjct: 440 EWAEMEIRNENYEQALKLMHRASTMPSRKVAYHDDTETVQARLYKSLKVWSMLADLEESF 499
Query: 495 GTFK--------------------------------------AYEKGIALFKWPYIFDIW 516
GTFK AYEKGI+LFKWP ++DIW
Sbjct: 500 GTFKSCKAVYDRIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKGISLFKWPNVYDIW 559
Query: 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYE 576
NTYL+KFL RYGG+KLERARDLFEQCLE CPP++AK LYLLYAKLEEEHG+ARHAMAVYE
Sbjct: 560 NTYLSKFLKRYGGSKLERARDLFEQCLENCPPQFAKPLYLLYAKLEEEHGMARHAMAVYE 619
Query: 577 RATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK 636
RAT AV EEMFE+FNIYIK+AAEIYGIPKTRQIYE+AIE LPE+ TR+MC++FA+METK
Sbjct: 620 RATNAVPQEEMFEIFNIYIKRAAEIYGIPKTRQIYEKAIEVLPEDKTREMCVRFADMETK 679
Query: 637 LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696
LGEIDRARAIY+HCSQICDPRVT FW WK FE+ HGNEDTMREMLRIKRS+QA YNTQ
Sbjct: 680 LGEIDRARAIYSHCSQICDPRVTTEFWQIWKEFEVRHGNEDTMREMLRIKRSIQAMYNTQ 739
Query: 697 V 697
+
Sbjct: 740 I 740
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340711773|ref|XP_003394443.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/722 (75%), Positives = 612/722 (84%), Gaps = 40/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
NEEDLPYEEEILRNP+SVKHW RYI+H K+ + +N +YER+LKELPGSYKLWYNYL+
Sbjct: 15 NEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKELPGSYKLWYNYLRQ 74
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
R Q+KG+ ITDP YEDVNN FER+LVFMHKMPRIW+DY + +Q IT+TR VFDRAL
Sbjct: 75 RVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYITRTRQVFDRAL 134
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQHHR+WPLY+ F+K H V ETAVRVFRRYLKL PED E+YIEYL SI RLDEAA
Sbjct: 135 RALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLISIGRLDEAA 194
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
VKLA IVN++ FVSKHGKSNHQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTDQLG
Sbjct: 195 VKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTDQLGP 254
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL+KRMEE A+N
Sbjct: 255 LWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSKRMEEAAKN 314
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
P+E+DDI+LELRLAR E LMERRLLLLNSVLLRQNPHNV EWHKRVRL++G+P +II
Sbjct: 315 --PTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRVRLYEGQPHEIIN 372
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TV P+LAVGKLHTLW+EFGKFYE N Q+ DAR++F+KAT VPYTKV+DLA+VW
Sbjct: 373 TYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHVPYTKVDDLASVW 432
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+E+R G + AL+LM RATA P R VAYHDE ETVQ R+YKS+K+WS+YADLEES
Sbjct: 433 CEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSLKVWSMYADLEES 492
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 493 FGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKGIALFKWPNVYDI 552
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WNTYLTKFL RYGGTKLER RDLFEQCLE CPP+YAK LYLLYAKLEEEHGLARHAM+VY
Sbjct: 553 WNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEEEHGLARHAMSVY 612
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
ERAT AVLPEE FEMFNIYIKKAA+IYG+PKTRQIYE+AIE L E+ TR+MCL+FAEMET
Sbjct: 613 ERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNTREMCLRFAEMET 672
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGE+DRARAIYAHCSQICDPRV + FW WK FE+ HGNEDTMREMLRIKRSVQA YNT
Sbjct: 673 KLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREMLRIKRSVQAMYNT 732
Query: 696 QV 697
QV
Sbjct: 733 QV 734
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350402452|ref|XP_003486489.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/722 (75%), Positives = 612/722 (84%), Gaps = 40/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
NEEDLPYEEEILRNP+SVKHW RYI+H K+ + +N +YER+LKELPGSYKLWYNYL+
Sbjct: 15 NEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKELPGSYKLWYNYLRQ 74
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
R Q+KG+ ITDP YEDVNN FER+LVFMHKMPRIW+DY + +Q IT+TR VFDRAL
Sbjct: 75 RVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYITRTRQVFDRAL 134
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQHHR+WPLY+ F+K H V ETAVRVFRRYLKL PED E+YIEYL SI RLDEAA
Sbjct: 135 RALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLISIGRLDEAA 194
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
VKLA IVN++ FVSKHGKSNHQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTDQLG
Sbjct: 195 VKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTDQLGP 254
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL+KRMEE A+N
Sbjct: 255 LWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSKRMEEAAKN 314
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
P+E+DDI+LELRLAR E LMERRLLLLNSVLLRQNPHNV EWHKRVRL++G+P +II
Sbjct: 315 --PTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRVRLYEGQPHEIIN 372
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TV P+LAVGKLHTLW+EFGKFYE N Q+ DAR++F+KAT VPYTKV+DLA+VW
Sbjct: 373 TYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHVPYTKVDDLASVW 432
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+E+R G + AL+LM RATA P R VAYHDE ETVQ R+YKS+K+WS+YADLEES
Sbjct: 433 CEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSLKVWSMYADLEES 492
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 493 FGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKGIALFKWPNVYDI 552
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WNTYLTKFL RYGGTKLER RDLFEQCLE CPP+YAK LYLLYAKLEEEHGLARHAM+VY
Sbjct: 553 WNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEEEHGLARHAMSVY 612
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
ERAT AVLPEE FEMFNIYIKKAA+IYG+PKTRQIYE+AIE L E+ TR+MCL+FAEMET
Sbjct: 613 ERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNTREMCLRFAEMET 672
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGE+DRARAIYAHCSQICDPRV + FW WK FE+ HGNEDTMREMLRIKRSVQA YNT
Sbjct: 673 KLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREMLRIKRSVQAMYNT 732
Query: 696 QV 697
QV
Sbjct: 733 QV 734
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345492136|ref|XP_001602137.2| PREDICTED: pre-mRNA-splicing factor SYF1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/726 (73%), Positives = 604/726 (83%), Gaps = 40/726 (5%)
Query: 10 YTTENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYN 69
Y NEEDL YEEEILRN +SVKHW RYI+H + +N +YER+LKELPGSYKLWY
Sbjct: 17 YVFHNEEDLLYEEEILRNAYSVKHWWRYIDHLRTTQSPNLNVVYERALKELPGSYKLWYA 76
Query: 70 YLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVF 129
YL+ R KQ+ G+ I DP YE VNN FER+LVFMHKMPRIW+DY + +Q IT+TRH+F
Sbjct: 77 YLRHRVKQLVGRPINDPLYEVVNNAFERALVFMHKMPRIWMDYCTLMTEQGYITRTRHIF 136
Query: 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
DRALRALPITQHHR+WPLY+ FVK H V E AVRVFRRYLKL PE+ E+YI+YL SIERL
Sbjct: 137 DRALRALPITQHHRIWPLYIDFVKRHNVHEMAVRVFRRYLKLAPEETEEYIDYLISIERL 196
Query: 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
DEAA+KLA IVN++ FVSKHGKS HQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTD
Sbjct: 197 DEAAMKLANIVNQDDFVSKHGKSKHQLWNELCDLISKNPTKIKSLNVDAIIRGGLRRYTD 256
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
Q G LWN+LADYY+RSGLFERARDIYEEAIQTVTTVRDF+QVFDAYAQFEELSL KRMEE
Sbjct: 257 QAGPLWNALADYYVRSGLFERARDIYEEAIQTVTTVRDFSQVFDAYAQFEELSLKKRMEE 316
Query: 310 IAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPL 369
AEN P+E+DDI+LELRLAR E+LMERRLLLLNSV LRQNPHNVL+WHKRV L++G+P
Sbjct: 317 AAEN--PTEDDDIDLELRLARFENLMERRLLLLNSVSLRQNPHNVLDWHKRVELYEGQPH 374
Query: 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429
+II TYTEAV+T+ P+LAVGKLH+LW+ F KFYE NDQ+ DAR +F+KA +VPY KV+DL
Sbjct: 375 EIINTYTEAVQTIQPQLAVGKLHSLWVAFAKFYEKNDQISDARTVFEKAVMVPYLKVDDL 434
Query: 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYAD 489
A+VWCEWAE+E+R G + ALRLM RATA P+R VAYHDE+ETVQ RVYK++K+WS+YAD
Sbjct: 435 ASVWCEWAEMEIRHGFYKEALRLMHRATAMPSRKVAYHDESETVQKRVYKNLKVWSMYAD 494
Query: 490 LEESFGTFK--------------------------------------AYEKGIALFKWPY 511
LEESFGTFK AYEKGI+LFKWP
Sbjct: 495 LEESFGTFKTCKAVYDKIIELKIATPQIIINYGLFLEENNYFEEAFRAYEKGISLFKWPN 554
Query: 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHA 571
+FDIWNTYLTKFL RYGGTKLER RDLFEQCLE CPP++AK LYLLYAKLEEEHGLARHA
Sbjct: 555 VFDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKHAKALYLLYAKLEEEHGLARHA 614
Query: 572 MAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631
M+VYERATGAVLPEE FEMFNIYIKKAA+IYG+PKTRQIYE+AIE L EE TR+MCL+FA
Sbjct: 615 MSVYERATGAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLSEENTREMCLRFA 674
Query: 632 EMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691
EME KLGE+DRARAIYAHCSQICDPR+T FW WK FE++HGNEDTMREMLRIKRSVQA
Sbjct: 675 EMEKKLGEVDRARAIYAHCSQICDPRITNNFWQTWKEFEVSHGNEDTMREMLRIKRSVQA 734
Query: 692 QYNTQV 697
YNTQ+
Sbjct: 735 MYNTQI 740
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380030166|ref|XP_003698726.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 1111 bits (2874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/722 (75%), Positives = 611/722 (84%), Gaps = 40/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
NEEDLPYEEEILRNP+SVKHW RYI+H K+ +N +YER+LKELPGSYKLWYNYL+
Sbjct: 15 NEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSNNLNIVYERALKELPGSYKLWYNYLRQ 74
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
R Q+KG+ ITD YEDVNN FER+LVFMHKMPRIW+DY + +Q IT+TR VFDRAL
Sbjct: 75 RVNQLKGRCITDLLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYITRTRQVFDRAL 134
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQHHR+WPLY+ F+K H V ETAVRVFRRYLKL PED E+YIEYL SI RLDEAA
Sbjct: 135 RALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLRSIGRLDEAA 194
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
VKLA IVN++ F+SKHGKSNHQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTDQLG
Sbjct: 195 VKLAQIVNQDDFISKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTDQLGP 254
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL+KRMEE A+N
Sbjct: 255 LWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSKRMEEAAKN 314
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
P+E+DDI+LELRLAR E LMERRLLLLNSVLLRQNPHNV EWHKRVRL++G+P +II
Sbjct: 315 --PTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRVRLYEGQPHEIIN 372
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TV P+LAVGKLHTLW+EFGKFYE N+Q+ DAR++F+KAT VPYTKV+DLA+VW
Sbjct: 373 TYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENNQIADARVVFEKATHVPYTKVDDLASVW 432
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+E+R G + AL+LM RATA P R VAYHDE ETVQ R+YKS+K+WS+YADLEES
Sbjct: 433 CEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSLKVWSMYADLEES 492
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 493 FGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKGIALFKWPNVYDI 552
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WNTYLTKFL RYGGTKLER RDLFEQCLE CPP+YAK LYLLYAKLEEEHGLARHAM+VY
Sbjct: 553 WNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEEEHGLARHAMSVY 612
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
ERAT AVLPEE FEMFNIYIKKAA+IYG+PKTRQIYE+AIE L E+ TR+MCL+FAEMET
Sbjct: 613 ERATNAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNTREMCLRFAEMET 672
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGE+DRARAIYAHCSQICDPRV + FW WK FE+ HGNEDTMREMLRIKRSVQA YNT
Sbjct: 673 KLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREMLRIKRSVQAMYNT 732
Query: 696 QV 697
QV
Sbjct: 733 QV 734
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66554055|ref|XP_395622.2| PREDICTED: pre-mRNA-splicing factor SYF1-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/722 (75%), Positives = 610/722 (84%), Gaps = 40/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
NEEDLPYEEEILRNP+SVKHW RYI+H K+ +N +YER+LKELPGSYKLWYNYL+
Sbjct: 15 NEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSNNLNIVYERALKELPGSYKLWYNYLRQ 74
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
R Q+KG+ ITD YEDVNN FER+LVFMHKMPRIW+DY + +Q IT+TR VFDRAL
Sbjct: 75 RVNQLKGRCITDLLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYITRTRQVFDRAL 134
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQHHR+WPLY+ F+K H V ETAVRVFRRYLKL PED E+YIEYL SI RLDEAA
Sbjct: 135 RALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLRSIGRLDEAA 194
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
VKLA IVN++ F+SKHGKSNHQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTDQLG
Sbjct: 195 VKLAQIVNQDDFISKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTDQLGP 254
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL+KRMEE A+N
Sbjct: 255 LWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSKRMEEAAKN 314
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
P+E+DDI+LELRLAR E LMERRLLLLNSVLLRQNPHNV EWHKRVRL++G+P +II
Sbjct: 315 --PTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRVRLYEGQPHEIIN 372
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TV P+LAVGKLHTLW+EFGKFYE N+Q+ DAR++F+KAT VPYTKV+DLA+VW
Sbjct: 373 TYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENNQIADARVVFEKATHVPYTKVDDLASVW 432
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+E+R G + AL+LM RAT P R VAYHDE ETVQ R+YKS+K+WS+YADLEES
Sbjct: 433 CEWAEMEIRHGNYKEALKLMHRATVMPFRKVAYHDETETVQMRLYKSLKVWSMYADLEES 492
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 493 FGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKGIALFKWPNVYDI 552
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WNTYLTKFL RYGGTKLER RDLFEQCLE CPP+YAK LYLLYAKLEEEHGLARHAM+VY
Sbjct: 553 WNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEEEHGLARHAMSVY 612
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
ERAT AVLPEE FEMFNIYIKKAA+IYG+PKTRQIYE+AIE L E+ TR+MCL+FAEMET
Sbjct: 613 ERATNAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNTREMCLRFAEMET 672
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGE+DRARAIYAHCSQICDPRV + FW WK FE+ HGNEDTMREMLRIKRSVQA YNT
Sbjct: 673 KLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREMLRIKRSVQAMYNT 732
Query: 696 QV 697
QV
Sbjct: 733 QV 734
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242024076|ref|XP_002432456.1| XPA-binding protein, putative [Pediculus humanus corporis] gi|212517889|gb|EEB19718.1| XPA-binding protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/722 (74%), Positives = 608/722 (84%), Gaps = 38/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
+EEDL YEE+I++NP+SVKHWLRYIEHKK P IN YER+LKELPGSYKLWYNYLKL
Sbjct: 17 SEEDLAYEEDIIKNPYSVKHWLRYIEHKKFGPDEEINITYERALKELPGSYKLWYNYLKL 76
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
RR QVK +TDP YE+VN+ FERSLVFMHKMPRIWLDY +F+ DQ IT+TR +FDRAL
Sbjct: 77 RRTQVKNIKVTDPIYEEVNSAFERSLVFMHKMPRIWLDYCQFITDQRLITRTRQIFDRAL 136
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQHHR+WPLY+ FVKSH +PETAVRVFRRYLKL PED EDY+EYL SI RLDEAA
Sbjct: 137 RALPITQHHRIWPLYIKFVKSHNIPETAVRVFRRYLKLCPEDTEDYVEYLISIGRLDEAA 196
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
+KLA+IVN + FVSKHGKS HQLWNELCE+IS+NP K+RSLNV+AIIRGGLRRYTDQLGH
Sbjct: 197 LKLAHIVNTDDFVSKHGKSKHQLWNELCELISKNPTKVRSLNVEAIIRGGLRRYTDQLGH 256
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQ+FD YAQFEELSL+KRMEE++
Sbjct: 257 LWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQIFDTYAQFEELSLSKRMEEVSNE 316
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
PSEEDDI+L+LRLAR E LMERRLLLLNSVLLRQNPHNV EW KRV L++GKPL+II
Sbjct: 317 PNPSEEDDIDLDLRLARFEHLMERRLLLLNSVLLRQNPHNVHEWQKRVLLYEGKPLEIID 376
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TVDPKLAVGKL+TLW+ F KFYE NDQ+EDARLIF+KAT V +TKV+DLA++W
Sbjct: 377 TYTEAVQTVDPKLAVGKLYTLWVNFAKFYEKNDQIEDARLIFEKATQVSFTKVDDLASIW 436
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+E+R AL+LM +AT P R V YHD++ETVQ+R+YKS+K WS+YADLEES
Sbjct: 437 CEWAEMEIRHENFSEALKLMQKATVPPPRKVDYHDDSETVQSRLYKSLKTWSMYADLEES 496
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 497 FGTFKTCKAVYDRIIDLRIATPQIIINYGSFLEEHNYFEEAFRAYEKGIALFKWPNVYDI 556
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WNTYLTKFL R+GGTKLERARDLFEQCLE CPP+YAKTLYLLYAKLEEE+G+ARHAMAVY
Sbjct: 557 WNTYLTKFLKRFGGTKLERARDLFEQCLENCPPKYAKTLYLLYAKLEEEYGMARHAMAVY 616
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
E+AT AVLPEEMFE+FNIYIKKAAEIYG+PKTRQIYE+AIE L E R MCL+FA+ME
Sbjct: 617 EKATSAVLPEEMFELFNIYIKKAAEIYGVPKTRQIYEKAIEVLDEASARDMCLRFADMER 676
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGEIDRARAIYAHCSQ+CDPRVT FW WK FEI HGNEDT+REMLRIKRSVQA YNT
Sbjct: 677 KLGEIDRARAIYAHCSQMCDPRVTGDFWQTWKEFEIRHGNEDTVREMLRIKRSVQATYNT 736
Query: 696 QV 697
QV
Sbjct: 737 QV 738
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383856988|ref|XP_003703988.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/722 (75%), Positives = 610/722 (84%), Gaps = 40/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
NEEDLPYEEEILRNP+SVKHW RYI+H K+ + +N +YER+LKELPGSYKLWYNYL+
Sbjct: 15 NEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKELPGSYKLWYNYLRQ 74
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
R Q+KG+ ITDP YEDVNN FER+LVFMHKMPRIW+DY + +Q IT+TR VFDRAL
Sbjct: 75 RVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYITRTRQVFDRAL 134
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQHHR+WPLY+ F+K H V ETA+RVFRRYLKL PED E+YIEYL SI RLDEAA
Sbjct: 135 RALPITQHHRIWPLYIEFLKKHNVYETAIRVFRRYLKLAPEDTEEYIEYLISIGRLDEAA 194
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
VKLA IVN++ FVSKHGKSNHQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTDQLG
Sbjct: 195 VKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTDQLGP 254
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL++RMEE +N
Sbjct: 255 LWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSRRMEEATKN 314
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
P+E+DDI+LELRLAR E LMERRLLLLNSVLLRQNPHNV EWHKRV L++G+P +II
Sbjct: 315 --PTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRVMLYEGQPHEIIN 372
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TV P+LAVGKLHTLW+ FGKFYE N Q+ DAR++F+KAT VPYTKV+DLA+VW
Sbjct: 373 TYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIADARVVFEKATHVPYTKVDDLASVW 432
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+E+R G + AL+LM RATA P R VAYHDE ETVQ R+YKS+K+WS+YADLEES
Sbjct: 433 CEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSLKVWSMYADLEES 492
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 493 FGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKGIALFKWPNVYDI 552
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WNTYLTKFL RYGGTKLER RDLFEQCLE CPP+YAK LYLLYAKLEEEHGLARHAM+VY
Sbjct: 553 WNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEEEHGLARHAMSVY 612
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
ERAT AVLPEE FEMFNIYIKKAA+IYG+PKTRQIYE+AIE L EE TR+MCL+FAEMET
Sbjct: 613 ERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEENTREMCLRFAEMET 672
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGE+DRARAIYAHCSQICDPRVT+ FW WK FE+ HGNEDTMREMLRIKRSVQA YNT
Sbjct: 673 KLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREMLRIKRSVQAMYNT 732
Query: 696 QV 697
QV
Sbjct: 733 QV 734
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332018615|gb|EGI59196.1| Pre-mRNA-splicing factor SYF1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 1109 bits (2868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/726 (74%), Positives = 612/726 (84%), Gaps = 40/726 (5%)
Query: 10 YTTENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYN 69
+ +NEEDLPYEEEILRNP+SVKHW RYI+H K+ +N +YER+LKELPGSYKLWYN
Sbjct: 30 FPLKNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTNSKNLNVVYERALKELPGSYKLWYN 89
Query: 70 YLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVF 129
YL+ R Q+KG+ I DP YEDVNN FER+LVFMHKMPRIW+DY + ++ IT+TR VF
Sbjct: 90 YLRQRVSQLKGRCIIDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEECYITRTRQVF 149
Query: 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
DR+LRALPITQHHR+WPLY+ F+K H V ETAVRVFRRYLKL PED E+YIEYL SIERL
Sbjct: 150 DRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLISIERL 209
Query: 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
DEAAVKLA IVN++ FVSKHGKSNHQLWNELC++IS+NP KI+SLNVDAIIRGGLRRYTD
Sbjct: 210 DEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLRRYTD 269
Query: 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309
QLG LWNSLADYY+RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL K +EE
Sbjct: 270 QLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLKKLIEE 329
Query: 310 IAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPL 369
A N P+EEDDI+LELRLARLE LMERRLLLLNSVLLRQNPHNV EWHKRV+L++G+P
Sbjct: 330 AARN--PTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRVKLYEGQPH 387
Query: 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429
+II TYTEAV+TV P+LAVGKL+TLW+ FGKFYE N Q+EDAR++F+KAT VPYTKV+DL
Sbjct: 388 EIINTYTEAVQTVQPQLAVGKLYTLWVAFGKFYEENGQIEDARVVFEKATYVPYTKVDDL 447
Query: 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYAD 489
A+VWCEWAE+E+R G + AL+LM RAT PAR VAYHDE ETVQ R+YKS+K+WS+YAD
Sbjct: 448 ASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSLKVWSMYAD 507
Query: 490 LEESFGTFK--------------------------------------AYEKGIALFKWPY 511
LEESFGTFK AYEKGIALFKWP
Sbjct: 508 LEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKGIALFKWPN 567
Query: 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHA 571
++DIWNTYLTKFL RYGGTKLER RDLFEQCLE CPP+YAK LYLLYAKLEEEHGLARHA
Sbjct: 568 VYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEEEHGLARHA 627
Query: 572 MAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631
M+VYERAT AVLPEE F+MFNIYIKKAA+IYG+PKTRQIYE+AIE L ++ TR++CL+FA
Sbjct: 628 MSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDDNTREICLRFA 687
Query: 632 EMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691
EMETKLGE+DRARAIYAHCSQICDPRVT+ FW WK FE+ HGNEDTMREMLRIKRSVQA
Sbjct: 688 EMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREMLRIKRSVQA 747
Query: 692 QYNTQV 697
YNTQV
Sbjct: 748 MYNTQV 753
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195381577|ref|XP_002049524.1| GJ21637 [Drosophila virilis] gi|194144321|gb|EDW60717.1| GJ21637 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/722 (73%), Positives = 608/722 (84%), Gaps = 38/722 (5%)
Query: 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKL 73
+EED+PYEEEILRN +SVKHWLRYI+HK AP +N +YER+LKELPGSYK+WYNYL+
Sbjct: 16 DEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNLVYERALKELPGSYKIWYNYLRT 75
Query: 74 RRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
RRKQV+GK+ TDP YE VNNTFER+LVFMHKMPRIW+DYG F+ Q +IT+TRHVFDRAL
Sbjct: 76 RRKQVRGKIPTDPMYEQVNNTFERALVFMHKMPRIWMDYGVFMSSQCRITRTRHVFDRAL 135
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
RALPITQH R+WPLYL FV+ + +PETA+RV+RRYLKLFPEDAE+Y+ YL ERLDEAA
Sbjct: 136 RALPITQHGRIWPLYLKFVQRYEMPETALRVYRRYLKLFPEDAEEYVAYLQEAERLDEAA 195
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
+LA+IV+ E FVSKHGKSNHQLWNELC+MIS++P K+ SLNVDAIIRGGLRRYTDQLGH
Sbjct: 196 QQLAHIVDNEHFVSKHGKSNHQLWNELCDMISKHPHKVHSLNVDAIIRGGLRRYTDQLGH 255
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
LWNSLADYY+RSGLF+RARDIYEEAIQTVTTVRDFTQVFD YAQFEELSLNKRME++A +
Sbjct: 256 LWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQFEELSLNKRMEQVAND 315
Query: 314 DTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373
+ +EEDDI++ELRL+R E LMERRLLLLNSVLLRQNPHNV EWHKRV+L++ KP DII
Sbjct: 316 EYANEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVKLYEDKPEDIIN 375
Query: 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVW 433
TYTEAV+TV PK AVG+LHTLW+EF KFYE N Q+EDAR++F++ T V Y KVE LA VW
Sbjct: 376 TYTEAVQTVQPKQAVGQLHTLWVEFAKFYEANGQVEDARVVFERGTQVEYVKVEHLAAVW 435
Query: 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493
CEWAE+ELR Q EAAL+LM RATA P R VAYHDE ETVQ R+YKS+K+WS+YADLEES
Sbjct: 436 CEWAEMELRQQQFEAALKLMQRATAMPKRKVAYHDETETVQMRLYKSLKVWSMYADLEES 495
Query: 494 FGTFK--------------------------------------AYEKGIALFKWPYIFDI 515
FGTFK AYEKGIALFKWP ++DI
Sbjct: 496 FGTFKTCKAVYERIIDLKICTPQIIINYGLFLEEHNYYEEAYRAYEKGIALFKWPNVYDI 555
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
WN+YLTKFL RYGGTKLERARDLFEQCL+ CPP +AK YLLYAKLEEEHGLARHAMAVY
Sbjct: 556 WNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMAVY 615
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET 635
+RAT AV +EMF+M+NI+IKKAAEIYG+P+TR+IYE+AIE+LPE+ R MC+KFAE+ET
Sbjct: 616 DRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIYEKAIEALPEQNMRHMCVKFAELET 675
Query: 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNT 695
KLGE+DRARAIYAHCSQ+CDPR+TA FW WK FE+ HGNEDTMREMLRIKRSVQA YNT
Sbjct: 676 KLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNT 735
Query: 696 QV 697
QV
Sbjct: 736 QV 737
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 703 | ||||||
| UNIPROTKB|E2RPV4 | 855 | XAB2 "Uncharacterized protein" | 0.423 | 0.348 | 0.721 | 1.4e-194 | |
| UNIPROTKB|J9PAI6 | 799 | XAB2 "Uncharacterized protein" | 0.423 | 0.372 | 0.721 | 1.4e-194 | |
| FB|FBgn0033859 | 883 | CG6197 [Drosophila melanogaste | 0.889 | 0.707 | 0.552 | 5.8e-185 | |
| DICTYBASE|DDB_G0277977 | 850 | xab2 "TPR-like helical domain- | 0.695 | 0.575 | 0.442 | 2.3e-172 | |
| ZFIN|ZDB-GENE-040426-685 | 851 | xab2 "XPA binding protein 2" [ | 0.897 | 0.741 | 0.507 | 3e-165 | |
| UNIPROTKB|F1SCH5 | 855 | XAB2 "Uncharacterized protein" | 0.894 | 0.735 | 0.506 | 1.2e-159 | |
| UNIPROTKB|F6RY07 | 855 | XAB2 "Uncharacterized protein" | 0.894 | 0.735 | 0.506 | 1.6e-159 | |
| UNIPROTKB|F5H315 | 852 | XAB2 "Pre-mRNA-splicing factor | 0.894 | 0.738 | 0.504 | 4.1e-159 | |
| UNIPROTKB|Q9HCS7 | 855 | XAB2 "Pre-mRNA-splicing factor | 0.894 | 0.735 | 0.504 | 4.1e-159 | |
| MGI|MGI:1914689 | 855 | Xab2 "XPA binding protein 2" [ | 0.894 | 0.735 | 0.503 | 8.6e-159 |
| UNIPROTKB|E2RPV4 XAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 215/298 (72%), Positives = 252/298 (84%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASE 316
|
|
| UNIPROTKB|J9PAI6 XAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 1.4e-194, Sum P(2) = 1.4e-194
Identities = 215/298 (72%), Positives = 252/298 (84%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASE 316
|
|
| FB|FBgn0033859 CG6197 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1794 (636.6 bits), Expect = 5.8e-185, P = 5.8e-185
Identities = 354/641 (55%), Positives = 439/641 (68%)
Query: 16 EDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
ED+PYEEEILRN +SVKHWLRYI+HK AP +N +YER+LKELPGSYK+W+NYL+ RR
Sbjct: 18 EDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNMVYERALKELPGSYKIWHNYLRTRR 77
Query: 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135
KQV+GK+ TDP YE+VN+ FER+LVFMHKMPRIW+DYG F+ Q KIT+TRHVFDRALRA
Sbjct: 78 KQVRGKIPTDPMYEEVNSAFERALVFMHKMPRIWMDYGAFMTSQCKITRTRHVFDRALRA 137
Query: 136 LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVK 195
LPITQH R+WPLYL FV+ +PETA+RV+RRYLKLFPED E+Y++YL +RLDEAA +
Sbjct: 138 LPITQHGRIWPLYLQFVRRFEMPETALRVYRRYLKLFPEDTEEYVDYLQEADRLDEAAQQ 197
Query: 196 LAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLW 255
LA+IV+ E FVSKHGKSNHQLWNELC++IS+NP K+ SLNVDAIIRGGLRRYTDQLGHLW
Sbjct: 198 LAHIVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDAIIRGGLRRYTDQLGHLW 257
Query: 256 NSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315
NSLADYY+RSGLF+RARDIYEEAIQTVTTVRDFTQVFD YAQFEELSLN+RME++A N+
Sbjct: 258 NSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQFEELSLNRRMEQVAANEA 317
Query: 316 PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRTY 375
+ QNPHNV EWHKRV L++ KP +II TY
Sbjct: 318 ATEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWHKRVTLYEDKPAEIISTY 377
Query: 376 TEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCE 435
TEAV+TV PK AVGKLHTLW+EF KFYE N Q+EDAR++F++ T V Y KVEDLA VWCE
Sbjct: 378 TEAVQTVQPKQAVGKLHTLWVEFAKFYEANGQVEDARVVFERGTEVEYVKVEDLAAVWCE 437
Query: 436 WAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESFG 495
WAE+ELR Q E Y+D+ ETVQAR+++S+K+WS+YADLEESFG
Sbjct: 438 WAEMELRQQQFEAALKLMQRATAMPKRKIAYYDDTETVQARLHRSLKVWSMYADLEESFG 497
Query: 496 TFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-PR 549
TFK YE+ I L P I + +L + Y E A +E+ + P
Sbjct: 498 TFKTCKAVYERIIDLKICTPQIIINYGMFLEEH--NY----FEEAYRAYEKGISLFKWPN 551
Query: 550 XXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK- 606
+G + A ++E+ PE + +Y K E +G+ +
Sbjct: 552 VYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEE-HGLARH 610
Query: 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
+Y+RA ++ E+ M F + ++ + R R IY
Sbjct: 611 AMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIY 651
|
|
| DICTYBASE|DDB_G0277977 xab2 "TPR-like helical domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 221/499 (44%), Positives = 317/499 (63%)
Query: 16 EDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRR 75
+DLPYEE++ +NP+SV WLRY+E K+ +P+ N IYER+++ELP SYK+W+ YL R
Sbjct: 30 DDLPYEEDVSKNPYSVNCWLRYLEFKQGSPQKQRNYIYERAIRELPRSYKIWHQYLLERT 89
Query: 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA 135
++GK I + S+E VN FERSLVF+ KMPRIW++Y FLM Q KIT TR FDRAL A
Sbjct: 90 LAIRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYCEFLMIQEKITLTRKTFDRALIA 149
Query: 136 LPITQHHRVWPLYLSFVKSHAVPE-TAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
LP+TQH+R+W Y F+ ++P T +RV++RYLK+ PE E+YIEYL I+ E
Sbjct: 150 LPVTQHYRIWNEYTKFILKRSIPSLTCIRVYKRYLKIQPEKVEEYIEYLIKIKEWQEVVN 209
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+L +++ F S GKS H W +LCE++S P +I ++VD++IR G+ +++DQ+G L
Sbjct: 210 QLIKLLDNVKFKSIKGKSRHDHWLQLCEILSSYPKQITGVDVDSVIRSGIGKFSDQIGKL 269
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W L+DYYI+ FE+ARDI+EEA+ +V T RDF+ ++++Y QFE+ SL +EI E D
Sbjct: 270 WCYLSDYYIQLAQFEKARDIFEEALTSVGTARDFSFIWESYTQFED-SLIAAKQEILEED 328
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLD---I 371
PS QNP+NV EW KRV L+ + I
Sbjct: 329 -PSEDNLLEFDIIIERYENLIQRQPLLLNSVMLKQNPNNVQEWLKRVNLYSNPTPNVKMI 387
Query: 372 IRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431
I+T+T+++K++DP+LA GKL T++ F FYE N++L ARLIF+ + V + ++DL+T
Sbjct: 388 IQTFTDSIKSIDPQLAKGKLSTIYSTFAHFYEQNNKLSQARLIFENSLTVNFKTIDDLST 447
Query: 432 VWCEWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLE 491
++C++AE+EL+ E +E E VQ R++KSIK+W+ Y DLE
Sbjct: 448 LYCDYAEMELKHRNYEKAIEILKRGTVSPKKQNTIIEENEPVQKRLFKSIKIWTFYVDLE 507
Query: 492 ESFGTF---KA-YEKGIAL 506
ESFGTF K+ YEK I L
Sbjct: 508 ESFGTFHNTKSIYEKMIQL 526
|
|
| ZFIN|ZDB-GENE-040426-685 xab2 "XPA binding protein 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 329/648 (50%), Positives = 426/648 (65%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
++DLPYEEEI+RNP+SVK W+RYIEHK++A K+++N IYER+LKELPGSYKLWYNYL+ R
Sbjct: 14 DDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELPGSYKLWYNYLRER 73
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
RKQVKGK ITDP YE+VNN ER+LVFMHKMPRIW+DY +F++ Q KIT++R FDRALR
Sbjct: 74 RKQVKGKCITDPGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALR 133
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F ++ +PETA+RV+RRYLKL PE+AE+YI+YL S+ RLDEAA+
Sbjct: 134 ALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAAL 193
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E+FVSK GKSN+QLW+ELC++ISQNPDK+ SLNV AIIRGGL R+TDQLG L
Sbjct: 194 RLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGKL 253
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W S+ADYYIRSG FE+ARD+YEEAI TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 254 WCSMADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSELG 313
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPHNV EWHKRV+L++G+P II T
Sbjct: 314 QDEDDDIDLELRLARFESLITRRPLLLNSVLLR-QNPHNVHEWHKRVKLYEGQPRQIINT 372
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+T+DP A GK H+LW+ F KFYE N+Q++DAR IF+KAT V Y +V+DLA VWC
Sbjct: 373 YTEAVQTIDPMKATGKPHSLWVSFAKFYEDNEQIDDARTIFEKATKVNYKQVDDLAAVWC 432
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
E+ E+ELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 433 EYGEMELRHENYDQASRILRKATAIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESL 492
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-P 548
GTF++ Y++ I L P I I N Y FL + E + +E+ + P
Sbjct: 493 GTFQSTKAVYDRIIDLRIATPQI--IIN-Y-AMFLEEHN--YFEESFKAYERGIALFKWP 546
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P + + + K E YG+ +
Sbjct: 547 NVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGC-PAKYAKTIYLLYAKLEEEYGLAR 605
Query: 607 -TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ E QM + + ++ + RAIY ++
Sbjct: 606 HAMAVYERATAAVEAEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEV 653
|
|
| UNIPROTKB|F1SCH5 XAB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
Identities = 329/650 (50%), Positives = 417/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
E ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 ECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP++Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYERATRAV--EPSQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
|
|
| UNIPROTKB|F6RY07 XAB2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
Identities = 329/650 (50%), Positives = 417/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVPLHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
E ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 ECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP +Q M + + ++ + R+IY ++
Sbjct: 611 HAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEV 658
|
|
| UNIPROTKB|F5H315 XAB2 "Pre-mRNA-splicing factor SYF1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 328/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 16 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 75
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 76 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 135
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 136 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 195
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 196 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 255
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 256 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 315
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 316 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 374
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 375 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 434
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 435 QCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 494
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 495 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 548
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 549 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 607
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP +Q M + + ++ + R IY ++
Sbjct: 608 HAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 655
|
|
| UNIPROTKB|Q9HCS7 XAB2 "Pre-mRNA-splicing factor SYF1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
Identities = 328/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 QCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+YERA ++ EP +Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYERATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
|
|
| MGI|MGI:1914689 Xab2 "XPA binding protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
Identities = 327/650 (50%), Positives = 416/650 (64%)
Query: 15 EEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLR 74
EEDLPYEEEI+RN FSVK WLRYIE K+ APK +N +YER+LK LP SYKLWY YLK R
Sbjct: 19 EEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKAR 78
Query: 75 RKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134
R QVK + +TDP+YEDVNN ER+ VFMHKMPR+WLDY +FLMDQ ++T TR FDRALR
Sbjct: 79 RAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALR 138
Query: 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194
ALPITQH R+WPLYL F++SH +PETAVR +RR+LKL PE AE+YIEYL S +RLDEAA
Sbjct: 139 ALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ 198
Query: 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254
+LA +VN E FVSK GKSN+QLW+ELC++ISQNPDK++SLNVDAIIRGGL R+TDQLG L
Sbjct: 199 RLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKL 258
Query: 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEND 314
W SLADYYIRSG FE+ARD+YEEAI+TV TVRDFTQVFD+YAQFEE + +ME +E
Sbjct: 259 WCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG 318
Query: 315 TPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNPHNVLEWHKRVRLFDGKPLDIIRT 374
QNPH+V EWHKRV L G+P +II T
Sbjct: 319 REEEDDVDLELRLARFEQLISRRPLLLNSVLLR-QNPHHVHEWHKRVALHQGRPREIINT 377
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
YTEAV+TVDP A GK HTLW+ F KFYE N QL+DAR+I +KAT V + +V+DLA+VWC
Sbjct: 378 YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWC 437
Query: 435 EWAELELRAGQEEXXXXXXXXXXXXXXXXXXYHDEAETVQARVYKSIKLWSLYADLEESF 494
+ ELELR + Y D +E VQ RVYKS+K+WS+ ADLEES
Sbjct: 438 QCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL 497
Query: 495 GTFKA----YEKGIAL-FKWPYIFDIWNTYLTKFLSRYGGTKL-ERARDLFEQCLEACPP 548
GTF++ Y++ + L P I + +L + K ER LF+ P
Sbjct: 498 GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKW------P 551
Query: 549 RXXXXXXXXXXXXXXXHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606
+G + A ++E+A P+ ++ +Y + E +G+ +
Sbjct: 552 NVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE-WGLAR 610
Query: 607 -TRQIYERAIESLPEEPTRQ--MCLKFAEMETKLGEIDRARAIYAHCSQI 653
+Y+RA ++ EP +Q M + + ++ + R IY ++
Sbjct: 611 HAMAVYDRATRAV--EPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEV 658
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q4WVF4 | SYF1_ASPFU | No assigned EC number | 0.4925 | 0.9701 | 0.8128 | yes | N/A |
| Q9DCD2 | SYF1_MOUSE | No assigned EC number | 0.6610 | 0.9601 | 0.7894 | yes | N/A |
| Q9HCS7 | SYF1_HUMAN | No assigned EC number | 0.6610 | 0.9601 | 0.7894 | yes | N/A |
| Q6CAR6 | SYF1_YARLI | No assigned EC number | 0.4055 | 0.9203 | 0.8790 | yes | N/A |
| Q75EF0 | SYF1_ASHGO | No assigned EC number | 0.2648 | 0.9487 | 0.8306 | yes | N/A |
| Q6CYA2 | SYF1_KLULA | No assigned EC number | 0.2367 | 0.9402 | 0.8283 | yes | N/A |
| Q99PK0 | SYF1_RAT | No assigned EC number | 0.6610 | 0.9601 | 0.7894 | yes | N/A |
| Q5BH69 | SYF1_EMENI | No assigned EC number | 0.4747 | 0.9701 | 0.8014 | yes | N/A |
| Q54Z08 | SYF1_DICDI | No assigned EC number | 0.4799 | 0.9658 | 0.7988 | yes | N/A |
| Q9P7R9 | SYF1_SCHPO | No assigned EC number | 0.4319 | 0.9672 | 0.8607 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
No hit with e-value below 0.005
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 703 | |||
| KOG2047|consensus | 835 | 100.0 | ||
| KOG1915|consensus | 677 | 100.0 | ||
| KOG0495|consensus | 913 | 100.0 | ||
| KOG1915|consensus | 677 | 100.0 | ||
| KOG0495|consensus | 913 | 100.0 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG2047|consensus | 835 | 100.0 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG4626|consensus | 966 | 100.0 | ||
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG4626|consensus | 966 | 100.0 | ||
| KOG2002|consensus | 1018 | 99.97 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| KOG2002|consensus | 1018 | 99.96 | ||
| KOG1914|consensus | 656 | 99.95 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.94 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.93 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.93 | |
| KOG0547|consensus | 606 | 99.91 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.91 | |
| KOG0547|consensus | 606 | 99.9 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.9 | |
| KOG2076|consensus | 895 | 99.89 | ||
| KOG1914|consensus | 656 | 99.89 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2076|consensus | 895 | 99.85 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG2396|consensus | 568 | 99.83 | ||
| KOG1155|consensus | 559 | 99.81 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG1070|consensus | 1710 | 99.81 | ||
| KOG1258|consensus | 577 | 99.79 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| KOG1155|consensus | 559 | 99.78 | ||
| KOG2003|consensus | 840 | 99.77 | ||
| KOG1258|consensus | 577 | 99.77 | ||
| KOG1126|consensus | 638 | 99.76 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.76 | |
| KOG1127|consensus | 1238 | 99.74 | ||
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 99.73 | |
| KOG1126|consensus | 638 | 99.72 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| KOG1173|consensus | 611 | 99.7 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| KOG1156|consensus | 700 | 99.68 | ||
| KOG0548|consensus | 539 | 99.68 | ||
| KOG1173|consensus | 611 | 99.67 | ||
| KOG4162|consensus | 799 | 99.66 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG1070|consensus | 1710 | 99.66 | ||
| KOG0624|consensus | 504 | 99.65 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.64 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.64 | |
| KOG0624|consensus | 504 | 99.64 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.63 | |
| KOG2003|consensus | 840 | 99.63 | ||
| KOG2396|consensus | 568 | 99.62 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.62 | |
| KOG1127|consensus | 1238 | 99.62 | ||
| KOG4162|consensus | 799 | 99.61 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.61 | |
| KOG1129|consensus | 478 | 99.6 | ||
| KOG1174|consensus | 564 | 99.59 | ||
| KOG0548|consensus | 539 | 99.59 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.59 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.56 | |
| KOG0128|consensus | 881 | 99.55 | ||
| KOG1156|consensus | 700 | 99.53 | ||
| KOG1174|consensus | 564 | 99.52 | ||
| KOG1125|consensus | 579 | 99.46 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.45 | |
| KOG1125|consensus | 579 | 99.44 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG2376|consensus | 652 | 99.44 | ||
| KOG1129|consensus | 478 | 99.41 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 99.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.31 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.3 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.29 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.28 | |
| KOG1840|consensus | 508 | 99.25 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.25 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.24 | |
| KOG1840|consensus | 508 | 99.24 | ||
| KOG0128|consensus | 881 | 99.21 | ||
| KOG2376|consensus | 652 | 99.21 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.16 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG3785|consensus | 557 | 99.13 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.11 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 99.11 | |
| KOG0550|consensus | 486 | 99.1 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.08 | |
| KOG3060|consensus | 289 | 99.04 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.03 | |
| KOG1128|consensus | 777 | 99.02 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.01 | |
| KOG3060|consensus | 289 | 98.99 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.91 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.88 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.87 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.84 | |
| KOG1128|consensus | 777 | 98.84 | ||
| KOG0550|consensus | 486 | 98.79 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.73 | |
| KOG3617|consensus | 1416 | 98.72 | ||
| KOG0553|consensus | 304 | 98.71 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.7 | |
| KOG3617|consensus | 1416 | 98.68 | ||
| KOG3785|consensus | 557 | 98.67 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.64 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG0553|consensus | 304 | 98.62 | ||
| KOG2053|consensus | 932 | 98.56 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.55 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.54 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.51 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.47 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 98.44 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.43 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.42 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.41 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.36 | |
| KOG4340|consensus | 459 | 98.36 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.35 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.33 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.32 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 98.32 | |
| KOG3616|consensus | 1636 | 98.31 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.29 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.23 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.22 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.18 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.15 | |
| KOG4340|consensus | 459 | 98.15 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.11 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.11 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.1 | |
| KOG3616|consensus | 1636 | 98.07 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.97 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.96 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.95 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.94 | |
| KOG0543|consensus | 397 | 97.92 | ||
| KOG2053|consensus | 932 | 97.92 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.88 | |
| KOG0543|consensus | 397 | 97.77 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.77 | |
| KOG1130|consensus | 639 | 97.76 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.74 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.72 | |
| KOG3081|consensus | 299 | 97.72 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.71 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.66 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.65 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.51 | |
| KOG3081|consensus | 299 | 97.51 | ||
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 97.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.47 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.36 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.32 | |
| KOG2796|consensus | 366 | 97.31 | ||
| KOG1941|consensus | 518 | 97.24 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.21 | |
| KOG1585|consensus | 308 | 97.19 | ||
| KOG4234|consensus | 271 | 97.17 | ||
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 97.16 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.13 | |
| KOG4642|consensus | 284 | 97.12 | ||
| KOG1586|consensus | 288 | 97.08 | ||
| KOG4234|consensus | 271 | 97.07 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.98 | |
| KOG4555|consensus | 175 | 96.97 | ||
| KOG4642|consensus | 284 | 96.9 | ||
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 96.89 | |
| KOG1130|consensus | 639 | 96.88 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.82 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 96.81 | |
| KOG1586|consensus | 288 | 96.75 | ||
| KOG4555|consensus | 175 | 96.74 | ||
| KOG0985|consensus | 1666 | 96.72 | ||
| KOG1941|consensus | 518 | 96.7 | ||
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.55 | |
| KOG4648|consensus | 536 | 96.53 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.51 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.46 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 96.45 | |
| KOG4648|consensus | 536 | 96.44 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.34 | |
| PF02184 | 32 | HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 | 96.28 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.24 | |
| KOG2796|consensus | 366 | 96.18 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.14 | |
| KOG2610|consensus | 491 | 96.1 | ||
| KOG1585|consensus | 308 | 96.09 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.07 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.02 | |
| KOG2610|consensus | 491 | 95.93 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.93 | |
| KOG0890|consensus | 2382 | 95.84 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.82 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.79 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.4 | |
| KOG2471|consensus | 696 | 95.33 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.23 | |
| KOG1308|consensus | 377 | 95.09 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.98 | |
| KOG1464|consensus | 440 | 94.97 | ||
| KOG0376|consensus | 476 | 94.88 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.84 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.77 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.77 | |
| KOG0545|consensus | 329 | 94.62 | ||
| KOG0551|consensus | 390 | 94.47 | ||
| KOG0890|consensus | 2382 | 94.38 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.35 | |
| KOG0545|consensus | 329 | 94.27 | ||
| KOG1308|consensus | 377 | 94.26 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.1 | |
| KOG3824|consensus | 472 | 94.05 | ||
| KOG3824|consensus | 472 | 94.04 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.03 | |
| KOG2300|consensus | 629 | 93.43 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.88 | |
| KOG1464|consensus | 440 | 92.65 | ||
| KOG0376|consensus | 476 | 92.6 | ||
| KOG0530|consensus | 318 | 92.57 | ||
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 92.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.52 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.42 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.75 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.67 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 91.56 | |
| KOG2041|consensus | 1189 | 91.29 | ||
| KOG0985|consensus | 1666 | 91.21 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 91.08 | |
| KOG0530|consensus | 318 | 91.03 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.97 | |
| KOG4507|consensus | 886 | 90.6 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.57 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.16 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.89 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.61 | |
| KOG1538|consensus | 1081 | 89.13 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.78 | |
| KOG0551|consensus | 390 | 87.87 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.37 | |
| KOG2422|consensus | 665 | 87.23 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 87.07 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.01 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.37 | |
| KOG0529|consensus | 421 | 85.69 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.65 | |
| KOG2300|consensus | 629 | 85.6 | ||
| KOG2041|consensus | 1189 | 85.51 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.29 | |
| KOG4507|consensus | 886 | 84.13 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.51 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 83.14 | |
| KOG2471|consensus | 696 | 83.12 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.84 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.59 | |
| KOG1538|consensus | 1081 | 81.51 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 80.71 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.22 |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-89 Score=678.21 Aligned_cols=688 Identities=70% Similarity=1.176 Sum_probs=658.1
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+..+++.||.-|.+||.|++.|..|+.+-......+..-+||||++.+|.|..+|..|++...++.++.|..+..+...-
T Consensus 9 ~~~EDvpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn 88 (835)
T KOG2047|consen 9 FENEDVPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVN 88 (835)
T ss_pred ccccccchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence 34478999999999999999999999999866677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q psy6461 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 93 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 172 (703)
..|++++....+.|.+|+.|+++++.+|++...|+.|++||...|.+++..+|..|..|....+-++.++.+|++.|+..
T Consensus 89 ~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~ 168 (835)
T KOG2047|consen 89 NCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA 168 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchh
Q psy6461 173 PEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252 (703)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (703)
|...+.|+.++...+++++|.+.|..+++.+.|+++.|++++++|..+++++..+|+.+.+++++++++.++.+++++.+
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.+|..|++.|++.|.+++|+.+|+.++....++.+|.++|..|+.||+......|. +....+.+...+.+++..++.++
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888887 33333445557778889999999
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
+++++|+.+++++++++||+++..|.+++.+++|+..+.+.+|.+|+..++|...++....+|..+|++|+.+|+++.|+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc-ccccchhhHHHHHHhhHHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV-AYHDEAETVQARVYKSIKLWSLYADLE 491 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (703)
.+|+++++.+...+.+++.+|+.+|.++++..+++.|++++++|...+.+.. .+++.+.|.|.|+++|..+|.+|++++
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999999999999877655 888999999999999999999999999
Q ss_pred HhcCCh--------------------------------------hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChh
Q psy6461 492 ESFGTF--------------------------------------KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE 533 (703)
Q Consensus 492 ~~~~~~--------------------------------------~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 533 (703)
+..|.+ ++||++|+.|++|...++|..|+.++..+++..+++
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 999977 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHH
Q psy6461 534 RARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYER 613 (703)
Q Consensus 534 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (703)
+||.+|++|++.+|...+..+|+.|+.++...|....|+++|++|....+......+|+.||.-....-+....|.+|++
T Consensus 568 raRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 568 RARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 99999999999999877788999999999999999999999999999999988999999999998888899999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy6461 614 AIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693 (703)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 693 (703)
|++..|++......+.+|+++.+.|++++||.+|.-|.+++||.....+|..|..|+..||+.+.+++|+++.|.|++++
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa~y 727 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQATY 727 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccc
Q psy6461 694 NTQVLFTF 701 (703)
Q Consensus 694 ~~~~~~~~ 701 (703)
||+|+|+.
T Consensus 728 n~~~~~~a 735 (835)
T KOG2047|consen 728 NTDVNSMA 735 (835)
T ss_pred hhhHHHHH
Confidence 99999875
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=427.23 Aligned_cols=534 Identities=22% Similarity=0.390 Sum_probs=471.4
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT 94 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~ 94 (703)
.+.+||..|..|-.+...|+.|+..+. ++++.+|+++|||||..+..+..+|+.|++++.. + .++..|+++
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk---n-----k~vNhARNv 129 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK---N-----KQVNHARNV 129 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh---h-----hhHhHHHHH
Confidence 348999999999999999999999999 9999999999999999999999999999999654 3 557779999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
++||+...|.-..+|..|.-++-..|++.-||.+|+|-+...|. ...|..++.|+.+.++.+.|+.+|++.+-.+|+
T Consensus 130 ~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~---eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 130 WDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD---EQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 99999999999999999999999999999999999999999995 589999999999999999999999999999988
Q ss_pred CHHHHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 175 DAEDYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 175 ~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
-. .|+ .+-...|+..-++++|+.+++.-+ +. ...
T Consensus 207 v~-~wikyarFE~k~g~~~~aR~VyerAie~~~---------------------~d---------------------~~~ 243 (677)
T KOG1915|consen 207 VS-NWIKYARFEEKHGNVALARSVYERAIEFLG---------------------DD---------------------EEA 243 (677)
T ss_pred HH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---------------------hH---------------------HHH
Confidence 64 454 445789999999999998863110 00 011
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..+....+.+..++..+++|+.+|+-++...|... ...+|..|..||+.+++. .+..+....++.-+|
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r-aeeL~k~~~~fEKqfGd~-----------~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGR-AEELYKKYTAFEKQFGDK-----------EGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHhcch-----------hhhHHHHhhhhhhHH
Confidence 24778899999999999999999999999988653 457999999999998642 344555666777788
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCcc---CCchhHHHHHHHHHHH-Hc
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLA---VGKLHTLWIEFGKFYE-VN 405 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~---~~~~~~~~~~~a~~~~-~~ 405 (703)
+.. ++.||.|.++|+.++.+.+ |+.+..+++|++||..+||... +..+..+|++|+-+.+ ..
T Consensus 312 E~~------------v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 312 EKE------------VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHH------------HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 885 8899999999999999876 8999999999999999888652 2456789999998876 78
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWS 485 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
.+.+.++++|+.|+++-|+..+++..+|+.|+.++.++.+...|++++..|+..+|. ..++-
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------------------~KlFk 441 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------------------DKLFK 441 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------------------hhHHH
Confidence 899999999999999999999999999999999999999999999999999999998 68999
Q ss_pred HHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 486 LYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 565 (703)
.|+.++...+++ |+.|.+|++-++-.|.+ +..|+.||.++...
T Consensus 442 ~YIelElqL~ef-----------------------------------DRcRkLYEkfle~~Pe~--c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 442 GYIELELQLREF-----------------------------------DRCRKLYEKFLEFSPEN--CYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHhhH-----------------------------------HHHHHHHHHHHhcChHh--hHHHHHHHHHHHHh
Confidence 999999988776 99999999999999998 67999999999999
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHH-----HcC--
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET-----KLG-- 638 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~-----~~g-- 638 (703)
|+.+.|+.+|+-|++...-+.+..+|..||+|++..|.+++||.+|++.|...+. +.+|+.+|.++. ..|
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h---~kvWisFA~fe~s~~~~~~~~~ 561 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH---VKVWISFAKFEASASEGQEDED 561 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc---chHHHhHHHHhccccccccccc
Confidence 9999999999999998877777889999999999999999999999999999875 448999999998 345
Q ss_pred ---------CHHHHHHHHHHHhcccC----CCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 639 ---------EIDRARAIYAHCSQICD----PRVTAGFWAAWKSFEITHGNEDTMREMLRI 685 (703)
Q Consensus 639 ---------~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 685 (703)
++..|+++|++|..... .+.-..+.+.|.+++...|+..+.+.|-.+
T Consensus 562 ~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~ 621 (677)
T KOG1915|consen 562 LAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSK 621 (677)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHh
Confidence 67899999999976532 233578999999999999999998888653
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=365.34 Aligned_cols=574 Identities=20% Similarity=0.294 Sum_probs=458.8
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
++.|.|+.+..+.+.||.++.+|+.-++++. .|++.-|+.+.++.++.+|.|.++|+..++++ ..+.
T Consensus 266 DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh------------p~d~ 333 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH------------PPDV 333 (913)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC------------ChHH
Confidence 5778889999999999999999999999999 99999999999999999999999999998872 3456
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
|..+...|++..|.++.+|+..+.++ .+...-.+++.+||+.+| .+..+|.....++ +++.|+.++.++++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP--~sv~LWKaAVelE----~~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIP--RSVRLWKAAVELE----EPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCC--chHHHHHHHHhcc----ChHHHHHHHHHHHH
Confidence 99999999999999999999999987 445566789999999999 5599999998884 35669999999999
Q ss_pred hCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhcc-
Q psy6461 171 LFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD- 249 (703)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (703)
..|.+.+.|..+. +...|+.|.++++++- ..-++...+|+..+.+.+.++.. .-++.++.+++..+..
T Consensus 405 ccp~s~dLwlAla-rLetYenAkkvLNkaR-------e~iptd~~IWitaa~LEE~ngn~---~mv~kii~rgl~~L~~n 473 (913)
T KOG0495|consen 405 CCPQSMDLWLALA-RLETYENAKKVLNKAR-------EIIPTDREIWITAAKLEEANGNV---DMVEKIIDRGLSELQAN 473 (913)
T ss_pred hccchHHHHHHHH-HHHHHHHHHHHHHHHH-------hhCCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhhc
Confidence 9999998887655 6778999999999886 34567789999999998877732 1445566666554432
Q ss_pred ---chhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 250 ---QLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 250 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
-.-+.|+.-+......|..-.|..+...++...-...+..+-|..-++.-.... .+.-
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~-------------------~~~c 534 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP-------------------AIEC 534 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc-------------------hHHH
Confidence 134567777777777777777777777777654444443333433322211110 0111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
..+.|.. +++.+|..-..|+..+.+.. |..+....++.+++..+|. .+.+|+++++.++.
T Consensus 535 arAVya~------------alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk------ae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 535 ARAVYAH------------ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK------AEILWLMYAKEKWK 596 (913)
T ss_pred HHHHHHH------------HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHh
Confidence 2222332 37778888888888777654 7788888888888887643 56688888888888
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
.|+...|+.++.++...+|++. ++|+.-..++.....++.|+.+|.++....|. .++|
T Consensus 597 agdv~~ar~il~~af~~~pnse----eiwlaavKle~en~e~eraR~llakar~~sgT------------------eRv~ 654 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSE----EIWLAAVKLEFENDELERARDLLAKARSISGT------------------ERVW 654 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcH----HHHHHHHHHhhccccHHHHHHHHHHHhccCCc------------------chhh
Confidence 8888888888888888888876 88888888888888888888888888887775 6888
Q ss_pred HHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy6461 485 SLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAK 560 (703)
Q Consensus 485 ~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 560 (703)
..++.++..+++. ++++++++.| |.+..+|+...+.... +++++.||..|..+++.+|+. +.+|+.++.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~---~~~ie~aR~aY~~G~k~cP~~--ipLWllLak 727 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQ---MENIEMAREAYLQGTKKCPNS--IPLWLLLAK 727 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHH---HHHHHHHHHHHHhccccCCCC--chHHHHHHH
Confidence 8888888877776 6778888888 6677778777754332 356799999999999999998 569999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-----------------
Q psy6461 561 LEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT----------------- 623 (703)
Q Consensus 561 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------- 623 (703)
++.+.|+..+|+.+++++...+|++ ..+|...+.++.+.|+.+.|+.+..+||+.+|++..
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 9999999999999999999999998 568999999999999999999999999999997743
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 624 -----------RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 624 -----------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
..+.+..+.+.+...++++|+.+|.||+++ +|+ .++.|.++..|+..+|+.++-++|+.++.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~-d~d-~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK-DPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 004455666667778999999999999999 566 79999999999999999999999986543
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=339.98 Aligned_cols=455 Identities=25% Similarity=0.431 Sum_probs=391.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHH
Q psy6461 48 IINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRH 127 (703)
Q Consensus 48 ~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 127 (703)
+-++.||..+..+--+...|+.|++++.++ +++..|+.+|+|||..+..+..+|+.|+.++++...+..||.
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq--------~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQ--------KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHH
Confidence 346788888888888999999999998876 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhccccccc
Q psy6461 128 VFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS 207 (703)
Q Consensus 128 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 207 (703)
+++||+...| ....+|..|..++...|+...|+++|++-+...|+.
T Consensus 129 v~dRAvt~lP--RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-------------------------------- 174 (677)
T KOG1915|consen 129 VWDRAVTILP--RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-------------------------------- 174 (677)
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH--------------------------------
Confidence 9999999999 558999999999989999999999999988776654
Q ss_pred ccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCccc
Q psy6461 208 KHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRD 287 (703)
Q Consensus 208 ~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 287 (703)
.+|..++++..+.++.+.|+.+|++.+-..|.+
T Consensus 175 ---------------------------------------------qaW~sfI~fElRykeieraR~IYerfV~~HP~v-- 207 (677)
T KOG1915|consen 175 ---------------------------------------------QAWLSFIKFELRYKEIERARSIYERFVLVHPKV-- 207 (677)
T ss_pred ---------------------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH--
Confidence 579999999999999999999999988877764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCC
Q psy6461 288 FTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGK 367 (703)
Q Consensus 288 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 367 (703)
+-|..|+.||... |+
T Consensus 208 --~~wikyarFE~k~---------------------------------------------------------------g~ 222 (677)
T KOG1915|consen 208 --SNWIKYARFEEKH---------------------------------------------------------------GN 222 (677)
T ss_pred --HHHHHHHHHHHhc---------------------------------------------------------------Cc
Confidence 4567777777654 77
Q ss_pred chhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHH
Q psy6461 368 PLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447 (703)
Q Consensus 368 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (703)
...++.+|++|++.+.... ....++..+|.+...++++++|+.+|+-||..-|++.. ..++-.|..++-+.|+..
T Consensus 223 ~~~aR~VyerAie~~~~d~---~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra--eeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDE---EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA--EELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHHhcchh
Confidence 7788999999998864432 24678899999999999999999999999999888732 388999999999988765
Q ss_pred HHHH--------HHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHH
Q psy6461 448 AALR--------LMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDI 515 (703)
Q Consensus 448 ~A~~--------~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~ 515 (703)
.... -|+.-+..+|-+ -+.|..|.++.+..|+. +.|++||...|....-..
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~n-----------------YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYN-----------------YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCC-----------------chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 4322 456667788874 79999999999999887 889999999976554444
Q ss_pred HHHHHHH-----HHHHhCCCChhHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 516 WNTYLTK-----FLSRYGGTKLERARDLFEQCLEACPPRY--AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 516 ~~~y~~~-----~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
|..|++. +.+.....+.++++++|+.|+++.|+.- ...+|+.||+++.++.+...|++++-.|+..+|++
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~--- 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD--- 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---
Confidence 4444432 2223345778999999999999999862 24799999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHH
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKS 668 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 668 (703)
-+|.+||.++.+++++|++|.+|++-|+..|++.. .|..||.++.++|+.++|+.+|+-|++...-+.+..+|..|++
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~--~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY--AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH--HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 69999999999999999999999999999999887 8999999999999999999999999987445668999999999
Q ss_pred HHHHcCCHHHHHHHH
Q psy6461 669 FEITHGNEDTMREML 683 (703)
Q Consensus 669 ~~~~~g~~~~~~~~~ 683 (703)
|+...|..+.++.+.
T Consensus 516 FEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 516 FEIEEGEFEKARALY 530 (677)
T ss_pred hhhhcchHHHHHHHH
Confidence 999999999999887
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=285.21 Aligned_cols=546 Identities=21% Similarity=0.297 Sum_probs=429.7
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
...++..+.+|.+.+.|+.-+++.- .+.|+.+.-.|+...|.|+.+|+..+.++ .+...-.+++.+
T Consensus 306 ~~I~~GCe~cprSeDvWLeaiRLhp---~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE-----------~~~~~K~RVlRK 371 (913)
T KOG0495|consen 306 NLIMKGCEECPRSEDVWLEAIRLHP---PDVAKTVVANAVRFLPTSVRLWLKAADLE-----------SDTKNKKRVLRK 371 (913)
T ss_pred HHHHHHHhhCCchHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCChhhhhhHHhhh-----------hHHHHHHHHHHH
Confidence 3456777889999999999888766 44588899999999999999999988875 345556889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
||...|++..+|-....+ .+.+.||.++.||.+-.| .+.++|..+++++. ++.|.+++.++-+..|.+.+
T Consensus 372 ALe~iP~sv~LWKaAVel----E~~~darilL~rAveccp--~s~dLwlAlarLet----YenAkkvLNkaRe~iptd~~ 441 (913)
T KOG0495|consen 372 ALEHIPRSVRLWKAAVEL----EEPEDARILLERAVECCP--QSMDLWLALARLET----YENAKKVLNKAREIIPTDRE 441 (913)
T ss_pred HHHhCCchHHHHHHHHhc----cChHHHHHHHHHHHHhcc--chHHHHHHHHHHHH----HHHHHHHHHHHHhhCCCChh
Confidence 999999999999888777 455569999999999999 55899999998853 68899999999999999999
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhh--ccchh
Q psy6461 178 DYIEYL---SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRY--TDQLG 252 (703)
Q Consensus 178 ~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 252 (703)
.|+... ...|+.+-..++..+.+.--. ..........|+.-+......... ...-+++...+.-. .++..
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~L~--~ngv~i~rdqWl~eAe~~e~agsv---~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSELQ--ANGVEINRDQWLKEAEACEDAGSV---ITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh--hcceeecHHHHHHHHHHHhhcCCh---hhHHHHHHHHHhhccccchhH
Confidence 887543 467777776677666542100 011223456677766554433221 23334554443322 23345
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
..|+.-++.+...+-++-|+.+|..+++.+|... .+|.+...|++.++.- +...+.++
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~---slWlra~~~ek~hgt~-------------------Esl~Allq 574 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKK---SLWLRAAMFEKSHGTR-------------------ESLEALLQ 574 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh---HHHHHHHHHHHhcCcH-------------------HHHHHHHH
Confidence 6899999999999999999999999999998654 7999999998876421 11111222
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
+ ++...|....+|+.++.. ..|+...|+.++.++++.. +++.++|+.-.+++..+.++++
T Consensus 575 k------------av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~------pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 575 K------------AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN------PNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred H------------HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC------CCcHHHHHHHHHHhhccccHHH
Confidence 2 377889999999999874 4599999999999998863 3578899999999999999999
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 411 ARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
|+.+|.++....|+. .+|+.++.++.-.++.++|+.++++|++.+|.. ..+|.+.+++
T Consensus 637 aR~llakar~~sgTe-----Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-----------------~Kl~lmlGQi 694 (913)
T KOG0495|consen 637 ARDLLAKARSISGTE-----RVWMKSANLERYLDNVEEALRLLEEALKSFPDF-----------------HKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHhccCCcc-----hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-----------------HHHHHHHhHH
Confidence 999999998887664 899999999999999999999999999999984 8999999999
Q ss_pred HHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 491 EESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG 566 (703)
Q Consensus 491 ~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 566 (703)
++..+++ ..|..+++.. |.+..+|..... +.+. .+.+-+||.+++++...+|++ ..+|+..++++.+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLak-leEk--~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAK-LEEK--DGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAG 767 (913)
T ss_pred HHHHHHHHHHHHHHHhccccC--CCCchHHHHHHH-HHHH--hcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcC
Confidence 9998887 4566666655 567778887763 3443 357899999999999999999 679999999999999
Q ss_pred ChHHHHHHHHHHhhccCcchHHHHHHHHHHHH------------------------------HHhcCchHHHHHHHHHHH
Q psy6461 567 LARHAMAVYERATGAVLPEEMFEMFNIYIKKA------------------------------AEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 567 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------------------------------~~~~~~~~A~~~~~~al~ 616 (703)
+.+.|..+..+|++.+|.+. .+|..-|-++ .....+++||.-|+++++
T Consensus 768 n~~~a~~lmakALQecp~sg--~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 768 NKEQAELLMAKALQECPSSG--LLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred CHHHHHHHHHHHHHhCCccc--hhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999874 3444333322 234678999999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHH
Q psy6461 617 SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWK 667 (703)
Q Consensus 617 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 667 (703)
.+|++.. +|.-+-.++...|.-+.-..+|.+|.+. +|. .+.+|....
T Consensus 846 ~d~d~GD--~wa~fykfel~hG~eed~kev~~~c~~~-EP~-hG~~W~avS 892 (913)
T KOG0495|consen 846 KDPDNGD--AWAWFYKFELRHGTEEDQKEVLKKCETA-EPT-HGELWQAVS 892 (913)
T ss_pred cCCccch--HHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCC-CCcHHHHHh
Confidence 9999988 8999999999999999999999999987 555 677887644
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=331.59 Aligned_cols=593 Identities=16% Similarity=0.093 Sum_probs=446.8
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT 94 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~ 94 (703)
....|+++++.+|.+...+..++..+. .|++++|...|+++++..|.+...+..++...... |++++|...
T Consensus 280 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~ 351 (899)
T TIGR02917 280 ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL--------GRVDEAIAT 351 (899)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC--------CCHHHHHHH
Confidence 336789999999998888888887777 89999999999999999999988888877776543 889999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
+++++...|.++.+|..++.++...|++++|...|+++++..| .....|..++.++...|++++|+..|+++++..|.
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP--ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999888 45777888888888889999999999999998887
Q ss_pred CHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 175 DAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 175 ~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
..... +..+...|++++|...+..+... .+.....|..++.+.....+. ..+...++..+...|. .
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~-~ 498 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-------QPDNASLHNLLGAIYLGKGDL---AKAREAFEKALSIEPD-F 498 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCCcHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCCC-c
Confidence 76543 34456789999999988887642 122334555555554433321 1334445555554443 3
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH--HH---HHHHh-hhCCCCCCcch----
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL--NK---RMEEI-AENDTPSEEDD---- 321 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~--~~---~~~~~-~~~~~~~~~~~---- 321 (703)
...+..++.++...|++++|...|++++...|.... .+..........+ +. ..... ...+.......
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 575 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR---AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 457778888888888888888888888877665332 2222222111110 00 01111 01111000000
Q ss_pred -----HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHH
Q psy6461 322 -----IELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTL 394 (703)
Q Consensus 322 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 394 (703)
.....+...++. .+..+|.+...|..++.++. |++++|+..|++++... | ..+..
T Consensus 576 ~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~ 637 (899)
T TIGR02917 576 YYLGKGQLKKALAILNE------------AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-P-----DSALA 637 (899)
T ss_pred HHHHCCCHHHHHHHHHH------------HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----CChHH
Confidence 001112222222 35667888888888777554 88888999998888763 2 24567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
|..++.++...|++++|..+|+++++..|.+. ..|..++.++...|++++|..++++.....|.+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 702 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNT----EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA----------- 702 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----------
Confidence 88888888888999999999999988888876 788888888888899999999999888888774
Q ss_pred HHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...+...+.++...|++ ..|++++...|.+ ..+..++.... ..|+.++|...++++++..|++
T Consensus 703 ------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~---~~g~~~~A~~~~~~~l~~~~~~- 769 (899)
T TIGR02917 703 ------ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALL---ASGNTAEAVKTLEAWLKTHPND- 769 (899)
T ss_pred ------hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCC-
Confidence 67888888888888887 5677777766554 33333332222 3678999999999999999998
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
+.++..++.++...|++++|...|+++++..|++. .++...+......|+ ++|+.+++++++..|+++. ++..+
T Consensus 770 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~--~~~~~ 843 (899)
T TIGR02917 770 -AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA--VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA--ILDTL 843 (899)
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH--HHHHH
Confidence 67999999999999999999999999999999874 455666666667778 8899999999999999876 78899
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
+.++...|++++|..+|+++++..+. ++.++.+++......|..++|+++++..
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998544 6899999999999999999999998553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=290.67 Aligned_cols=547 Identities=20% Similarity=0.340 Sum_probs=405.1
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh---------cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCC
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK---------NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKV 82 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~---------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~ 82 (703)
...+....||++++..|.|++.|..|++... ...++.....||+++-.-...+.+|+.|+++...+
T Consensus 41 p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q----- 115 (835)
T KOG2047|consen 41 PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ----- 115 (835)
T ss_pred ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----
Confidence 3445568999999999999999999995543 24478888999999999999999999999998876
Q ss_pred CCchhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc---------------------
Q psy6461 83 ITDPSYEDVNNTFERSLVFMHK--MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT--------------------- 139 (703)
Q Consensus 83 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------------------- 139 (703)
|++...+..|++||...|- +..+|-.|..+..+.+=.+-+.++|+|-|+..|..
T Consensus 116 ---~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 116 ---GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred ---chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHH
Confidence 8899999999999999884 66899999999888888888889999998888841
Q ss_pred ---------------cccccHHHHHHHHHhcCCh---HHHHHHHHHHHhhCCCCHH----HHHHHHHhcCCHHHHHHHHH
Q psy6461 140 ---------------QHHRVWPLYLSFVKSHAVP---ETAVRVFRRYLKLFPEDAE----DYIEYLSSIERLDEAAVKLA 197 (703)
Q Consensus 140 ---------------~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~A~~~~~ 197 (703)
.+..+|..++.+.....+. -...++++.++...|+... .++++|++.|.++.|+.+|+
T Consensus 193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1234444444443332111 1233455555555555443 23567899999999999998
Q ss_pred Hhhcc----ccc----------c--------c----ccCCch----hh---hHHHH----------HHHHhcCcccccc-
Q psy6461 198 YIVNK----ESF----------V--------S----KHGKSN----HQ---LWNEL----------CEMISQNPDKIRS- 233 (703)
Q Consensus 198 ~~~~~----~~~----------~--------~----~~~~~~----~~---~w~~~----------~~~l~~~~~~~~~- 233 (703)
+++.. ..| . . ..+... .+ .|... ..+++.+|.++..
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 88742 111 0 0 000000 00 01110 1344455554431
Q ss_pred ----------------ccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh-hcCCcccHHHHHHHHH
Q psy6461 234 ----------------LNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ-TVTTVRDFTQVFDAYA 296 (703)
Q Consensus 234 ----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~l~~~~~ 296 (703)
+..+++.+......++..+.+|..+|++|...|+.+.|+.+|+++++ .++++.++..+|+.|+
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA 432 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 22223333333444567788999999999999999999999999999 5688889999999999
Q ss_pred HHHHHHHHH-----HHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCch
Q psy6461 297 QFEELSLNK-----RMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPL 369 (703)
Q Consensus 297 ~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~ 369 (703)
.+|....+. .+....-.|.... +.-|+.-.. ....--.+...|..++.+.+ |.++
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~---------~~~yd~~~p---------vQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPE---------LEYYDNSEP---------VQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchh---------hhhhcCCCc---------HHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 998765432 1211111111100 000000000 00000125678999998766 9999
Q ss_pred hHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHHH---cCC
Q psy6461 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-TKVEDLATVWCEWAELELR---AGQ 445 (703)
Q Consensus 370 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~---~~~ 445 (703)
....+|++.++..- -.|++.++||.+++.+..++++-++|++++.+++ .++ .++|+.|..-... .-+
T Consensus 495 stk~vYdriidLri------aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v---~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 495 STKAVYDRIIDLRI------ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV---YDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH---HHHHHHHHHHHHHHhcCCC
Confidence 99999999998721 2578999999999999999999999999999843 232 4899998875443 347
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
++.|+.+|++|+..+|.. ....++..|+.+++..|-. ++|++|-+..+......+|..||.
T Consensus 566 lEraRdLFEqaL~~Cpp~---------------~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 566 LERARDLFEQALDGCPPE---------------HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHhcCCHH---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999853 2467899999999998865 889999988887889999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
++.+.+| +...|.+|++|++.-|++-...+.+.+++++.+.|..+.|+.+|.-+.+..++.....+|..|-.|+.+.
T Consensus 631 kaae~yG---v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 631 KAAEIYG---VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHHHHhC---CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 9998886 5899999999999999986678999999999999999999999999999998877788999999999999
Q ss_pred cCchHHHHHH
Q psy6461 602 YGIPKTRQIY 611 (703)
Q Consensus 602 ~~~~~A~~~~ 611 (703)
|+-+.-++++
T Consensus 708 GnedT~keML 717 (835)
T KOG2047|consen 708 GNEDTYKEML 717 (835)
T ss_pred CCHHHHHHHH
Confidence 9976666554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=326.21 Aligned_cols=598 Identities=13% Similarity=0.046 Sum_probs=456.8
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
+....++++++.+|.+...+...+.... .|++++|...|+++++..|.+...+...+..... .|++++|..
T Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~g~~~~A~~ 316 (899)
T TIGR02917 245 EAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--------LGNLEQAYQ 316 (899)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH--------cCCHHHHHH
Confidence 3446889999999999888887777766 8999999999999999999998888777766544 389999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
.|+++++..|.++..+..++.++...|++++|...+++++...|. ...+|..++..+...|++++|...|+++++.+|
T Consensus 317 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 317 YLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD--DPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999884 577888899999999999999999999999999
Q ss_pred CCHHHHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 174 EDAEDYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 174 ~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
++...+. ..+...|++++|+..+..++...+. ....+..++.......+. ..+..+++......|.
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~- 463 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-------LGRADLLLILSYLRSGQF---DKALAAAKKLEKKQPD- 463 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-------chhhHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCC-
Confidence 9887654 3456899999999999998753321 112222222222221111 1233445555555443
Q ss_pred hhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH--HHHHHH---HHHHhh-hCCCCCCcch--H
Q psy6461 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE--ELSLNK---RMEEIA-ENDTPSEEDD--I 322 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e--~~~~~~---~~~~~~-~~~~~~~~~~--~ 322 (703)
....|..+|..+...|++++|...|++++...|.... .+...+... .+..+. ....+. ..+....... .
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP---AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3568999999999999999999999999998776432 111111111 111111 111111 1111000000 0
Q ss_pred -------HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 323 -------ELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 323 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
....+...+++ .+..+|.+...+..++..+. |++++|...+++++...+ ..+.
T Consensus 541 ~~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~ 602 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEK------------AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP------DSPE 602 (899)
T ss_pred HHHHHcCCHHHHHHHHHH------------HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHH
Confidence 00111112222 35668888888888777554 889999999998877532 3467
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+|..++.++...|++++|+..|+++++..|.++ ..+..++.++.+.|++++|..+|+++++..|++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 668 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA----LALLLLADAYAVMKNYAKAITSLKRALELKPDN---------- 668 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------
Confidence 899999999999999999999999999888887 788899999999999999999999999999885
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...|..++.++...|++ .+++++....|. ....|...+.... ..|++++|...|++++...|++
T Consensus 669 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 669 -------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK--AALGFELEGDLYL---RQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--ChHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCc
Confidence 78888889998888887 445555544433 3333333332222 3578999999999999999986
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
..+..++.++...|++++|...++++++..|++ ..++...+..+...|++++|..+|+++++..|+++. ++..
T Consensus 737 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~ 809 (899)
T TIGR02917 737 ---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND--AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV--VLNN 809 (899)
T ss_pred ---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH--HHHH
Confidence 478889999999999999999999999999987 456666777777889999999999999999998765 7889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
++.++...|+ .+|+..++++++.. |+ ++.++..++.++...|..++|.+.++.+-...
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA-PN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC-CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999 88999999999984 44 58899999999999999999999986555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=306.71 Aligned_cols=602 Identities=11% Similarity=0.020 Sum_probs=410.8
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------cccCCCCchhH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQ--------VKGKVITDPSY 88 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------~~~~~~~~~~~ 88 (703)
..+++++..+|++++++...+++.. .|+.++|...++++++..|.+...|.....+.... ........|++
T Consensus 49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~ 128 (1157)
T PRK11447 49 QSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRT 128 (1157)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCH
Confidence 6788999999999999999999998 99999999999999999999999875332211100 00001124899
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFL-MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
++|...|++++...|.++.+-..|.... ...|+.++|+..|+++++.+| .+..++..++.++...|++++|+..|++
T Consensus 129 ~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 129 EEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999999999998876544443333 345899999999999999999 4588899999999999999999999999
Q ss_pred HHhhCCCCHH---HHHHHHHhcCCHHHHHHHHHHhhccccc-c--------------cccCCchhhhHHHHHHHHhcCcc
Q psy6461 168 YLKLFPEDAE---DYIEYLSSIERLDEAAVKLAYIVNKESF-V--------------SKHGKSNHQLWNELCEMISQNPD 229 (703)
Q Consensus 168 ~l~~~p~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~--------------~~~~~~~~~~w~~~~~~l~~~~~ 229 (703)
++...+.... .|.+.+...+....+...+...+...+- . ....+.... ...........+
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~--~~~G~~~~~~g~ 284 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA--RAQGLAAVDSGQ 284 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH--HHHHHHHHHCCC
Confidence 9876554322 2222222222223333333222210000 0 000000000 000111111111
Q ss_pred ccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHH---HHH---HHHHHHHHHH
Q psy6461 230 KIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQ---VFD---AYAQFEELSL 303 (703)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~---l~~---~~~~~e~~~~ 303 (703)
...+...++..+...|+ ...++..+|..+.+.|++++|+..|+++++..|+...... +.. .+..+.. +
T Consensus 285 ---~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~--g 358 (1157)
T PRK11447 285 ---GGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ--G 358 (1157)
T ss_pred ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH--H
Confidence 01344556666666654 3678999999999999999999999999998886542111 100 0000000 0
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHh
Q psy6461 304 NKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKT 381 (703)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~ 381 (703)
.... .......+...|+.+ +..+|.+..++..++.++. |++++|+..|+++++.
T Consensus 359 ~~~~------------~~g~~~eA~~~~~~A------------l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 359 DAAL------------KANNLAQAERLYQQA------------RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHH------------HCCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000 000122233344443 5567777777766665543 7777777777777765
Q ss_pred cCCCccC-C-----------------------------------chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Q psy6461 382 VDPKLAV-G-----------------------------------KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK 425 (703)
Q Consensus 382 ~~~~~~~-~-----------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 425 (703)
.+..... . -....+...+..+...|++++|+..|+++++.+|.+
T Consensus 415 ~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~ 494 (1157)
T PRK11447 415 DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494 (1157)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3221100 0 001123345566667899999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhh
Q psy6461 426 VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIA 505 (703)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~ 505 (703)
+ .+++.++.++.+.|++++|...+++++...|++ +..++.++.++...++. ++|+.
T Consensus 495 ~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-----------------~~~~~a~al~l~~~~~~---~~Al~ 550 (1157)
T PRK11447 495 V----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-----------------PEQVYAYGLYLSGSDRD---RAALA 550 (1157)
T ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHhCCCH---HHHHH
Confidence 7 889999999999999999999999999999985 67777777777666665 33333
Q ss_pred cC---CCC----chHHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHH
Q psy6461 506 LF---KWP----YIFDIW-----NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 506 ~~---~~~----~~~~~~-----~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
.+ +.. ....+- ..++.........|+.++|+.+++ ..|.+ +..++.++.++...|++++|+.
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~--~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS--TRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC--chHHHHHHHHHHHcCCHHHHHH
Confidence 22 111 100000 001111112224678899998877 57887 5688999999999999999999
Q ss_pred HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 574 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.|++++...|++ ...+...+..+...|++++|+..++++++..|+++. .+..++.++...|++++|...|+++++.
T Consensus 625 ~y~~al~~~P~~--~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 625 AYQRVLTREPGN--ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN--TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH--HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999998 456677777788889999999999999999998776 7888899999999999999999999987
Q ss_pred cCCCC----ChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 654 CDPRV----TAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 654 ~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
.+++. ...++...+.+....|..++|...++.+-
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54331 23577788999999999999999986653
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=275.28 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=319.8
Q ss_pred HHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q psy6461 21 EEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99 (703)
Q Consensus 21 e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 99 (703)
+.+++++|...+.+-.++...+ .|++..|...|+.+++..|+..+.|+.++..+..+ |+.+.|.+.|..|+
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~--------~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ--------GDLELAVQCFFEAL 177 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc--------CCCcccHHHHHHHH
Confidence 4456677777777777777777 77777777777777777777777777777666543 66677777777777
Q ss_pred HhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 100 VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 100 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
+.+|+..-+....++++..+|++.+|...|.+|+...| ...-+|..++.....+|+...|+..|+++++++|+..
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~--- 252 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL--- 252 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch---
Confidence 77777777777777777777777777777777777777 4567777777777777777777777777777777653
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHH
Q psy6461 180 IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLA 259 (703)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (703)
+++.+||
T Consensus 253 -------------------------------------------------------------------------dAYiNLG 259 (966)
T KOG4626|consen 253 -------------------------------------------------------------------------DAYINLG 259 (966)
T ss_pred -------------------------------------------------------------------------HHHhhHH
Confidence 6788999
Q ss_pred HHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhh
Q psy6461 260 DYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRL 339 (703)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (703)
++|...+.+++|...|.+++...|... ..+
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A---~a~----------------------------------------------- 289 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHA---VAH----------------------------------------------- 289 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcch---hhc-----------------------------------------------
Confidence 999999999999999999998777422 111
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 340 LLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 340 ~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
-.++-++ +|..+.|++.|++|+.. .| +.++++.++|..+...|+..+|...|.+
T Consensus 290 ------------------gNla~iYyeqG~ldlAI~~Ykral~~-~P-----~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 290 ------------------GNLACIYYEQGLLDLAIDTYKRALEL-QP-----NFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred ------------------cceEEEEeccccHHHHHHHHHHHHhc-CC-----CchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 0111111 28889999999999987 34 5789999999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
+|..+|+++ .....++.++...|++++|..+|.++++..|.. ...++.++.++..+|++
T Consensus 346 aL~l~p~ha----dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-----------------aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 346 ALRLCPNHA----DAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-----------------AAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhCCccH----HHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-----------------hhhhhhHHHHHHhcccH
Confidence 999999998 888999999999999999999999999999984 67788888888887776
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYER 577 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 577 (703)
++|...|+.++++.|.. ...+.++|..+-..|+.+.|.+.|.+
T Consensus 405 -----------------------------------~~Ai~~YkealrI~P~f--Ada~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 405 -----------------------------------DDAIMCYKEALRIKPTF--ADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred -----------------------------------HHHHHHHHHHHhcCchH--HHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 99999999999999997 67999999999999999999999999
Q ss_pred HhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 578 ATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME 634 (703)
Q Consensus 578 al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (703)
|+..+|.- .+........+...|++.+|.+-|+.||+..||.|. .+..++..+
T Consensus 448 AI~~nPt~--AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~l 500 (966)
T KOG4626|consen 448 AIQINPTF--AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCL 500 (966)
T ss_pred HHhcCcHH--HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHH
Confidence 99999975 456677778888899999999999999999999887 566665544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-29 Score=292.34 Aligned_cols=570 Identities=14% Similarity=0.077 Sum_probs=377.9
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|...+..+.-+++.. .++.+.|+..++|++.++|++++++...+.+.... |+.++|.+.++++++..|+++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~--------g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQ--------GDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhhCCCCh
Confidence 344455566677777 99999999999999999999999999988887654 899999999999999999998
Q ss_pred HHH----------------HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHH-HHHHHhcCChHHHHHHHHHHH
Q psy6461 107 RIW----------------LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLY-LSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 107 ~~~----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~l 169 (703)
.++ +..+.++...|++++|...|+++++..|.+ ..+-..| .......|+.++|+..|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~--~~la~~y~~~~~~~~g~~~~A~~~L~~ll 174 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPE--LDLAVEYWRLVAKLPAQRPEAINQLQRLN 174 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCC--hHHHHHHHHHHhhCCccHHHHHHHHHHHH
Confidence 875 556678888999999999999999988842 2221222 223334588999999999999
Q ss_pred hhCCCCHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHH--------------HHHhcCccccc
Q psy6461 170 KLFPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELC--------------EMISQNPDKIR 232 (703)
Q Consensus 170 ~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--------------~~l~~~~~~~~ 232 (703)
+.+|++...+ ..++...|++++|+..|+++...+.. .......|.... ..+..+|....
T Consensus 175 ~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~----~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 175 ADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG----RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 9999998854 45567899999999999998753321 112233443322 12222332211
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
.......+........+. .......|..+...|++++|+..|+++++..|.... .+...+......+
T Consensus 251 ~~~A~~~L~~~~~~~~dp-~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~---a~~~Lg~~~~~~g--------- 317 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADP-AFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE---ALGALGQAYSQQG--------- 317 (1157)
T ss_pred HHHHHHHHHHHHHhccCc-chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcC---------
Confidence 111111122111111111 111234588899999999999999999999886542 2222221111110
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcH--HHHHH------------HH--hhhcCCchhHHHHHH
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNV--LEWHK------------RV--RLFDGKPLDIIRTYT 376 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~--~~~~~------------~~--~~~~~~~~~a~~~~~ 376 (703)
....++..|+++ ++.+|++. ..|.. .+ .+..|++++|+..|+
T Consensus 318 ----------~~~eA~~~l~~A------------l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 318 ----------DRARAVAQFEKA------------LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred ----------CHHHHHHHHHHH------------HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 112233344443 44555533 22211 11 123489999999999
Q ss_pred HHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH----------------
Q psy6461 377 EAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE---------------- 440 (703)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---------------- 440 (703)
+++... | ....++..+|.++...|++++|+..|+++++.+|.+. ..+..++.++
T Consensus 376 ~Al~~~-P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~----~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 376 QARQVD-N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT----NAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHhC-C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 999873 3 3467889999999999999999999999999999886 4444444443
Q ss_pred --------------------------HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 441 --------------------------LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 441 --------------------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
...|++++|+..|+++++..|++ +.++..++.++...
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-----------------~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-----------------VWLTYRLAQDLRQA 508 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHc
Confidence 34556666666666666666653 45555556666655
Q ss_pred CCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHH
Q psy6461 495 GTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--------AKTLYLLYAKLE 562 (703)
Q Consensus 495 ~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~~~~~~~a~~~ 562 (703)
|+. ..|++++...|.. ...+..+...+ ...++.++|...++++.....+.. .....+..+..+
T Consensus 509 G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l---~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPND--PEQVYAYGLYL---SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHH---HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 555 3344444433322 22222222111 123455566665555332211100 001233455556
Q ss_pred HHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q psy6461 563 EEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (703)
...|++++|+.+++ ..|.+. .++......+.+.|++++|+..|+++++..|+++. .++.++.++...|++++
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~--~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~--a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPST--RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD--ARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHH
Confidence 66667777766655 356553 35566677777889999999999999999999876 89999999999999999
Q ss_pred HHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6461 643 ARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS 688 (703)
Q Consensus 643 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 688 (703)
|+..|+++++.. |+ +..++..++......|+.++|.+.++.+..
T Consensus 656 A~~~l~~ll~~~-p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 656 ARAQLAKLPATA-ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHhccC-CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999874 44 577888889989999999999988865443
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-30 Score=254.31 Aligned_cols=449 Identities=15% Similarity=0.135 Sum_probs=358.2
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIW 109 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 109 (703)
...-++++.-+. .|++.+|.+...-.-+.+|.+.+-....... .....+++...+.-..+++.+|.-.+.+
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai--------~~q~~r~d~s~a~~~~a~r~~~q~ae~y 119 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAI--------FFQGSRLDKSSAGSLLAIRKNPQGAEAY 119 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhh--------hhcccchhhhhhhhhhhhhccchHHHHH
Confidence 334445554333 7889999888888888888766543332221 1122446666777777889999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH---HHHHHhc
Q psy6461 110 LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY---IEYLSSI 186 (703)
Q Consensus 110 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~ 186 (703)
-++++++...|+++.|...|+.+++..| ...+.|..++..+...|+.+.|...|..+++++|+..-+. ..++...
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 9999999999999999999999999999 5688999999999999999999999999999999876543 3455678
Q ss_pred CCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC
Q psy6461 187 ERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266 (703)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (703)
|++++|..+|.+++.. .| ...-+|..||-++..+|
T Consensus 198 Grl~ea~~cYlkAi~~------------------------qp---------------------~fAiawsnLg~~f~~~G 232 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIET------------------------QP---------------------CFAIAWSNLGCVFNAQG 232 (966)
T ss_pred cccchhHHHHHHHHhh------------------------CC---------------------ceeeeehhcchHHhhcc
Confidence 9999999998877632 11 12357999999999999
Q ss_pred chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy6461 267 LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVL 346 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (703)
+...|+..|+++++..|...+ +|..+-.- |.++
T Consensus 233 ei~~aiq~y~eAvkldP~f~d------AYiNLGnV-----------------------------~ke~------------ 265 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNFLD------AYINLGNV-----------------------------YKEA------------ 265 (966)
T ss_pred hHHHHHHHHHHhhcCCCcchH------HHhhHHHH-----------------------------HHHH------------
Confidence 999999999999988775321 22211110 1111
Q ss_pred hhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc
Q psy6461 347 LRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV 426 (703)
Q Consensus 347 l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 426 (703)
+.++.|+..|.+|+.. .| +...++-++|.+|..+|.++-|+..|++++...|+-+
T Consensus 266 -------------------~~~d~Avs~Y~rAl~l-rp-----n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 266 -------------------RIFDRAVSCYLRALNL-RP-----NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred -------------------hcchHHHHHHHHHHhc-CC-----cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 6778899999999886 34 3566788888999999999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhc
Q psy6461 427 EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIAL 506 (703)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~ 506 (703)
..++.++..+-..|+..+|...|.+|+..+|+. ++..+.++.++..+|.+
T Consensus 321 ----~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-----------------adam~NLgni~~E~~~~--------- 370 (966)
T KOG4626|consen 321 ----DAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-----------------ADAMNNLGNIYREQGKI--------- 370 (966)
T ss_pred ----HHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----------------HHHHHHHHHHHHHhccc---------
Confidence 899999999989999999999999999999985 77788888777776654
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 507 FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 507 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
++|..+|.++++..|+. .....+++.++...|++++|+.-|+.++.+.|.-
T Consensus 371 --------------------------e~A~~ly~~al~v~p~~--aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f- 421 (966)
T KOG4626|consen 371 --------------------------EEATRLYLKALEVFPEF--AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF- 421 (966)
T ss_pred --------------------------hHHHHHHHHHHhhChhh--hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-
Confidence 99999999999999997 5689999999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHH
Q psy6461 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAW 666 (703)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 666 (703)
...+.....-+...|+.+.|.+.|.+|+..+|.-. +....++.++...|++.+|+..|+.|+++ +||.+....+..
T Consensus 422 -Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A--eAhsNLasi~kDsGni~~AI~sY~~aLkl-kPDfpdA~cNll 497 (966)
T KOG4626|consen 422 -ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA--EAHSNLASIYKDSGNIPEAIQSYRTALKL-KPDFPDAYCNLL 497 (966)
T ss_pred -HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH--HHHhhHHHHhhccCCcHHHHHHHHHHHcc-CCCCchhhhHHH
Confidence 34455566666678999999999999999999743 48889999999999999999999999999 566455555444
Q ss_pred HHH
Q psy6461 667 KSF 669 (703)
Q Consensus 667 ~~~ 669 (703)
.-.
T Consensus 498 h~l 500 (966)
T KOG4626|consen 498 HCL 500 (966)
T ss_pred HHH
Confidence 333
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-26 Score=242.30 Aligned_cols=567 Identities=13% Similarity=0.100 Sum_probs=342.5
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcccCCCCchhHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY-----KLWYNYLKLRRKQVKGKVITDPSYE 89 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (703)
.+..|..+++.+|.+.-..+.-+.+.. .+++..|...|.+++.++|... ..|....++ +..+
T Consensus 149 A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl------------~~~~ 216 (1018)
T KOG2002|consen 149 ADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKL------------GMSE 216 (1018)
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhc------------cchh
Confidence 334555555555555555555555555 5555555555555555555321 222222221 4445
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHH
Q psy6461 90 DVNNTFERSLVFMHKMPRIWLDYGRFLMDQH---KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFR 166 (703)
Q Consensus 90 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 166 (703)
.|+..|+|++..+|.+..+.+.++.+..... .+..+...+.++...+| .+|.+...++..+.-.|++..+..+..
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 5555555555555555555555555544432 23445555555555555 235555555554445555555555555
Q ss_pred HHHhhCCCCHH---HH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHH
Q psy6461 167 RYLKLFPEDAE---DY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAII 240 (703)
Q Consensus 167 ~~l~~~p~~~~---~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 240 (703)
.++...-.... .+ ...+...|++++|.+.|.+++..
T Consensus 295 ~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------------------------------------- 336 (1018)
T KOG2002|consen 295 HAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-------------------------------------- 336 (1018)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------------------------------------
Confidence 55443211111 11 12234455555555555554421
Q ss_pred HhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCCCc
Q psy6461 241 RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFT-QVFDAYAQFEELSLNKRMEEIAENDTPSEE 319 (703)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (703)
.++.+.-..+.+|.+|+..|+++.+...|+++++..|+..... .+-+.|+...+
T Consensus 337 ------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~------------------- 391 (1018)
T KOG2002|consen 337 ------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK------------------- 391 (1018)
T ss_pred ------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh-------------------
Confidence 1111223566778888888888888888888888777644321 12222222210
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccCCchhHHHHHH
Q psy6461 320 DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEF 398 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (703)
.......+...+.+ .++..|.+..+|+.++.+++ +++-..+..|..|++.+-..... -.+.+..+.
T Consensus 392 ~~~~~d~a~~~l~K------------~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNv 458 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGK------------VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNV 458 (1018)
T ss_pred hhHHHHHHHHHHHH------------HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhH
Confidence 00111222223333 36778999999999999876 78777799999988663222111 235678888
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCC--CCcch----HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPY--TKVED----LATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
|.++...|++++|...|.+++.... .+++. ...+-+.+++++-..++++.|-..|...++.+|.-
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y--------- 529 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY--------- 529 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh---------
Confidence 9999999999999999999987711 11111 11357788888888899999999999999999974
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
.+.+...+-+....++. ..+..++... ..++.+|..+....+.. .+...|..-|+..++....
T Consensus 530 --------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k---~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 530 --------IDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKK---SEWKPAKKKFETILKKTST 596 (1018)
T ss_pred --------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhh---hhhcccccHHHHHHhhhcc
Confidence 22233332222222332 2233333333 33445555444333332 1234455555555554322
Q ss_pred cchHHHHHHHHHHHHH------------cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy6461 549 RYAKTLYLLYAKLEEE------------HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (703)
...+-+.+.+|+++.. .+.+++|.++|.++++.+|.| ...-++.+-.....|++..|+.+|.+..+
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN--~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN--MYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch--hhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 2112345666665542 345688888999999999987 23334455556667899999999999888
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6461 617 SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696 (703)
Q Consensus 617 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 696 (703)
...+.+. +|+..|+++.-+|++-.|+++|++|+++..+.+...+..-+++.....|.+.++.+.+.+++++. ..+|+
T Consensus 675 a~~~~~d--v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~ 751 (1018)
T KOG2002|consen 675 ATSDFED--VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTS 751 (1018)
T ss_pred HHhhCCc--eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-Cccch
Confidence 7654444 89999999999999999999999999888777788899999999999999999999988888876 34556
Q ss_pred ccc
Q psy6461 697 VLF 699 (703)
Q Consensus 697 ~~~ 699 (703)
|.|
T Consensus 752 v~F 754 (1018)
T KOG2002|consen 752 VKF 754 (1018)
T ss_pred HHh
Confidence 665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-26 Score=250.09 Aligned_cols=432 Identities=13% Similarity=0.096 Sum_probs=306.0
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy6461 34 WLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112 (703)
Q Consensus 34 w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 112 (703)
+...+..+. .|++++|...|+++++..|+ +..|...+..+... |++++|...++++++.+|++..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l--------~~~~~Ai~~~~~al~l~p~~~~a~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNAL--------GDWEKVVEDTTAALELDPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 445565555 78888888888888888885 66777777766554 788888888888888888888888888
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH--HHhcCCHH
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY--LSSIERLD 190 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~--~~~~~~~~ 190 (703)
+.++...|++++|...|..++...+.. ....-..+.+.. ...+.......++..|.+...+..+ +....+..
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFR-NEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc-cHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 888888888888888887777655431 111111111111 1344455556666666654322111 10000000
Q ss_pred HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH---HHhCc
Q psy6461 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY---IRSGL 267 (703)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 267 (703)
.+...+.... ...+ .....+..++..+ ...++
T Consensus 275 ~~~~~~~~~~------------------------~~~~---------------------~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 275 PRPAGLEDSN------------------------ELDE---------------------ETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred cchhhhhccc------------------------cccc---------------------ccccchHHHHHHHHHhhhhhh
Confidence 0000000000 0000 0012223333222 23467
Q ss_pred hHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy6461 268 FERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLL 347 (703)
Q Consensus 268 ~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (703)
+++|...|++++...+..
T Consensus 310 y~~A~~~~~~al~~~~~~-------------------------------------------------------------- 327 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLG-------------------------------------------------------------- 327 (615)
T ss_pred HHHHHHHHHHHHhcCCCC--------------------------------------------------------------
Confidence 888888888888653211
Q ss_pred hcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Q psy6461 348 RQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK 425 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 425 (703)
|....+|..++.+ ..|++++|+..|++++... | .....|+.+|.++...|++++|+..|++++..+|.+
T Consensus 328 ---~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 398 (615)
T TIGR00990 328 ---EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398 (615)
T ss_pred ---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 1111222222221 2389999999999999863 3 357789999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhh
Q psy6461 426 VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIA 505 (703)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~ 505 (703)
+ .+|..++.++...|++++|+..|++++...|++ ...|..++.++...|++
T Consensus 399 ~----~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-----------------~~~~~~la~~~~~~g~~-------- 449 (615)
T TIGR00990 399 P----DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-----------------IFSHIQLGVTQYKEGSI-------- 449 (615)
T ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-----------------HHHHHHHHHHHHHCCCH--------
Confidence 7 899999999999999999999999999999985 66777777777766654
Q ss_pred cCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 506 LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 506 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
++|...|+++++..|++ +.++..+|.++...|++++|+..|++++...|.+
T Consensus 450 ---------------------------~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 450 ---------------------------ASSMATFRRCKKNFPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred ---------------------------HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999998 6799999999999999999999999999998864
Q ss_pred hHH-----HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 586 EMF-----EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 586 ~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
... .++...+......+++++|..+++++++.+|++.. .+..++.++...|++++|+..|++++++...
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~--a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI--AVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 321 11111222223358999999999999999998765 7899999999999999999999999998543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-25 Score=246.25 Aligned_cols=566 Identities=12% Similarity=0.034 Sum_probs=356.1
Q ss_pred chhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q psy6461 17 DLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTF 95 (703)
Q Consensus 17 ~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 95 (703)
...|+++++.+|.+..++..+++++. .|++++|+..++++++.+|.+..+...++.+ +++++|..+|
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------------~~~~kA~~~y 131 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------------PVEVKSVTTV 131 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------------ccChhHHHHH
Confidence 36899999999999999999999998 9999999999999999999998888776543 5688999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-----HhccChHHHHHHHHHHHHhCCcccccc-cHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 96 ERSLVFMHKMPRIWLDYGRFL-----MDQHKITQTRHVFDRALRALPITQHHR-VWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 96 ~~al~~~p~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
+++++..|++..+...++..+ +...+.++|.+.++ ++..+...++. +.....+++...++++.|+.++++.+
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999988888772 22233455555555 33333111233 33333777777888888888888888
Q ss_pred hhCCCCHHHHH----------------------------------HHHHhcCCHHHHHHHHHHhhcccccccccCCchhh
Q psy6461 170 KLFPEDAEDYI----------------------------------EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQ 215 (703)
Q Consensus 170 ~~~p~~~~~~~----------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 215 (703)
+..|.+...+. ..+...|+.++|.+.+.+.-.... ..+.....
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~---~~~~~~~~ 286 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT---TDAQEKSW 286 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc---CCCccHHH
Confidence 87777765322 222333444444444433211100 00000001
Q ss_pred hHH-----------------------------------------HHHHHHhcCccccc-------------cccHHHHHH
Q psy6461 216 LWN-----------------------------------------ELCEMISQNPDKIR-------------SLNVDAIIR 241 (703)
Q Consensus 216 ~w~-----------------------------------------~~~~~l~~~~~~~~-------------~~~~~~~~~ 241 (703)
+|. ....++...|.... .....+..+
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 111 01111111111000 000000011
Q ss_pred hHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHH----HHHHHhhhCCCC
Q psy6461 242 GGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLN----KRMEEIAENDTP 316 (703)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~----~~~~~~~~~~~~ 316 (703)
......| ...+....++-..++.|+.++|..+|+++....+. ... ..+..+.+.+...-+. ..+..+......
T Consensus 367 ~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 367 LLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-cccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 1111111 12344555666778889999999999998875221 111 1222222222211110 001111100000
Q ss_pred CCc--chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCC--cHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccCCch
Q psy6461 317 SEE--DDIELELRLARLEDLMERRLLLLNSVLLRQNPH--NVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAVGKL 391 (703)
Q Consensus 317 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~ 391 (703)
... ....+......++.+. ..+..+|. +...|..++.++. +...+|+..|.+++...|. .
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~---------~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd------~ 509 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIV---------RLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPD------A 509 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHH---------HhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCc------h
Confidence 000 0000000011111111 13556677 8888888887654 7778899988888877432 1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...+.++..+...|++++|+..|++++...|.+ ..++.++.++.+.|++++|...+++++...|..
T Consensus 510 -~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-------- 575 (987)
T PRK09782 510 -WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-------- 575 (987)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--------
Confidence 124555666678999999999999987775554 457788888889999999999999999888763
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..++...+......| ++++|...|+++++.+|+
T Consensus 576 ---------~~l~~~La~~l~~~G-----------------------------------r~~eAl~~~~~AL~l~P~--- 608 (987)
T PRK09782 576 ---------NALYWWLHAQRYIPG-----------------------------------QPELALNDLTRSLNIAPS--- 608 (987)
T ss_pred ---------HHHHHHHHHHHHhCC-----------------------------------CHHHHHHHHHHHHHhCCC---
Confidence 333333222222224 458888888888888885
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
...|..++.++.+.|++++|+..|++++...|++. ..+..+.......|++++|+.+|+++++..|+++. ++..++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~--a~~nLA 684 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA--LIRQLA 684 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Confidence 35788888888888888888888888888888874 46666666677778888888888888888888765 788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 632 EMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
.++...|++++|+..|++|++.. |+ ...+-..+..+....++++.+.+-+
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~-P~-~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI-DN-QALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CC-CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888884 44 5667777777777777666665544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-23 Score=237.40 Aligned_cols=574 Identities=11% Similarity=0.021 Sum_probs=380.4
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++++|...|+++++.+|++..++..++.++... |++++|+..++++++.+|.+...+..++.+ +++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~--------g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF--------GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE 124 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence 69999999999999999999999999999988764 899999999999999999998888887666 899
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHH--------HHhcCChHHHHHHHH-HHHhhCCCCHH--HH-HHHHHhcCCHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSF--------VKSHAVPETAVRVFR-RYLKLFPEDAE--DY-IEYLSSIERLD 190 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~-~~l~~~p~~~~--~~-~~~~~~~~~~~ 190 (703)
++|..+|++.+...|.+ ..+....+.. +... +.|.+.++ +.+..+|.+.. .. ..++...|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n--~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 125 VKSVTTVEELLAQQKAC--DAVPTLRCRSEVGQNALRLAQL---PVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hhHHHHHHHHHHhCCCC--hhHHHHHHHHhhccchhhhhhH---HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 99999999999999965 4555555554 4444 55555554 33333333332 23 56788999999
Q ss_pred HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHH
Q psy6461 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270 (703)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (703)
+|+..+.++++.. +.....+..+..+....-.. ..+.++.+. .......+|..+++.|.+.|+.++
T Consensus 200 ~Ai~lL~~L~k~~-------pl~~~~~~~L~~ay~q~l~~---~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 200 QADTLYNEARQQN-------TLSAAERRQWFDVLLAGQLD---DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhhCH---HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999998532 22333344444433221000 112222221 222456899999999999999999
Q ss_pred HHHHHHHHHhhcCCcc-cHHHHHH--HH--------HHHHHHHHHH----HHHH--hh----------hCCCCCCcchHH
Q psy6461 271 ARDIYEEAIQTVTTVR-DFTQVFD--AY--------AQFEELSLNK----RMEE--IA----------ENDTPSEEDDIE 323 (703)
Q Consensus 271 A~~~~~~~l~~~~~~~-~~~~l~~--~~--------~~~e~~~~~~----~~~~--~~----------~~~~~~~~~~~~ 323 (703)
|..++++.-...+... +-..+|. .. ..+.+...+. +... +. ......+-+..
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 344 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM- 344 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH-
Confidence 9998887433333211 1122222 11 1111111111 1000 00 00000000000
Q ss_pred HHHHHHHHHHHHh-hhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHH
Q psy6461 324 LELRLARLEDLME-RRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGK 400 (703)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 400 (703)
...+.......-. .+..-.-..+.+..|.+........- +..|+..+|...|+.+... ++.... ...+-..++.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~l~~~l~~ 421 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARL--SQTLMARLAS 421 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cccccc--CHHHHHHHHH
Confidence 0000000000000 00000001134555777777666554 3448999999999998875 222111 1223336677
Q ss_pred HHHHcCC-------------------------h---HHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHH
Q psy6461 401 FYEVNDQ-------------------------L---EDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAAL 450 (703)
Q Consensus 401 ~~~~~~~-------------------------~---~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~ 450 (703)
++.+.+. + ..+...+.+++...|. ++ .+|..++.++.. +++++|.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~----~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDA----AAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCH----HHHHHHHHHHHh-CCcHHHH
Confidence 7765543 2 2233444455555565 55 899999999877 8999999
Q ss_pred HHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHH
Q psy6461 451 RLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSR 526 (703)
Q Consensus 451 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~ 526 (703)
..+.+++...|++ . .....+..+...|++ ..|++++.. ++....|...+..+.
T Consensus 497 ~a~~~Al~~~Pd~-----------------~-~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all-- 553 (987)
T PRK09782 497 YAWLQAEQRQPDA-----------------W-QHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQ-- 553 (987)
T ss_pred HHHHHHHHhCCch-----------------H-HHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHH--
Confidence 9999999999973 2 244455556677776 334444333 222233444432222
Q ss_pred hCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchH
Q psy6461 527 YGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 527 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 606 (703)
..|+.++|...|+++++..|++ ...+..++......|++++|...|++++...|+ ...+......+.+.|++++
T Consensus 554 -~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 554 -AAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPA 627 (987)
T ss_pred -HCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHH
Confidence 3578999999999999999987 345555555555679999999999999999995 3567788888888999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
|...|+++++..|+++. ++..++.++...|++++|+..|++|++.. |+ ++.++.+++......|++++|...++.+
T Consensus 628 A~~~l~~AL~l~Pd~~~--a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~-~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 628 AVSDLRAALELEPNNSN--YQAALGYALWDSGDIAQSREMLERAHKGL-PD-DPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999876 89999999999999999999999999995 44 5899999999999999999999988655
Q ss_pred HHH
Q psy6461 687 RSV 689 (703)
Q Consensus 687 ~~~ 689 (703)
-.+
T Consensus 704 l~l 706 (987)
T PRK09782 704 IDD 706 (987)
T ss_pred Hhc
Confidence 443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-25 Score=243.17 Aligned_cols=261 Identities=13% Similarity=0.094 Sum_probs=221.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
+.+++|+..|++++.... ..+....+|..+|.++...|++++|+..|++++..+|.+. ..|+.++.++...|+
T Consensus 308 ~~y~~A~~~~~~al~~~~---~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK---LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCC
Confidence 567889999999987521 1124567899999999999999999999999999999887 889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|...|++++..+|++ +.+|...+.++...|++
T Consensus 381 ~~eA~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~---------------------------- 415 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSED-----------------PDIYYHRAQLHFIKGEF---------------------------- 415 (615)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH----------------------------
Confidence 999999999999999985 78898888888777665
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|+..|+++++.+|++ ...|..+|.++...|++++|+..|+++++.+|.+ ..++..+...+...|+++
T Consensus 416 -------~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 416 -------AQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA--PDVYNYYGELLLDQNKFD 484 (615)
T ss_pred -------HHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHH
Confidence 99999999999999998 5689999999999999999999999999999987 456667777777889999
Q ss_pred HHHHHHHHHHHhCCCcchH----HHHHHHHH-HHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTR----QMCLKFAE-METKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~----~~~~~~a~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
+|+..|+++++..|++... ..++..+. ++...|++++|...+++|+++. |+ +...+..++......|..++|.
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~-~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE-CDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC-cHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999875321 12222232 3334699999999999999984 55 5778999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy6461 681 EMLRIKRSVQA 691 (703)
Q Consensus 681 ~~~~~~~~~~~ 691 (703)
+.++.+-.+..
T Consensus 563 ~~~e~A~~l~~ 573 (615)
T TIGR00990 563 KLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHhc
Confidence 99887766654
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-24 Score=224.41 Aligned_cols=547 Identities=12% Similarity=0.062 Sum_probs=391.0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK--NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTF 95 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 95 (703)
..|.++|..||.....-..-+-++. .++.+.|+..|+|+++.+|.++...+.++.+.+.. .....+..+..++
T Consensus 185 ~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~-----~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 185 KYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF-----NDSDSYKKGVQLL 259 (1018)
T ss_pred HHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc-----cchHHHHHHHHHH
Confidence 4567888889976644443333443 79999999999999999999999998888776543 1235688899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 96 ERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT-QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 96 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
.++...+|.||.+...+++.+...|++..+..+..-++...-.. .....+...++.+..+|++++|-+.|..+++.+|+
T Consensus 260 ~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 260 QRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999854210 12334667788889999999999999999999999
Q ss_pred CHH-H---HHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 175 DAE-D---YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 175 ~~~-~---~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
+.. . +.++++..|+++.|..+|++++. ..|+.
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k------------------------~~p~~-------------------- 375 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLK------------------------QLPNN-------------------- 375 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHH------------------------hCcch--------------------
Confidence 832 2 35788999999999999998863 22321
Q ss_pred hhhHHHHHHHHHHHhC----chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 251 LGHLWNSLADYYIRSG----LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
.++...+|.+|...+ ..+.|..+..+++...|... ..|...+.+..... ...
T Consensus 376 -~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~---~a~l~laql~e~~d--------------------~~~ 431 (1018)
T KOG2002|consen 376 -YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS---EAWLELAQLLEQTD--------------------PWA 431 (1018)
T ss_pred -HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHhcC--------------------hHH
Confidence 245666677776654 45667777777777665432 23332222221110 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHH-H--HhhhcCCchhHHHHHHHHHHhcCCCccCC----chhHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHK-R--VRLFDGKPLDIIRTYTEAVKTVDPKLAVG----KLHTLWIEFG 399 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~--~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~~a 399 (703)
.+..|..+++. +.....+ -+..|+. . ..+..|++..|...|..|...+.+...+. .....-+++|
T Consensus 432 sL~~~~~A~d~-------L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 432 SLDAYGNALDI-------LESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHHHHHHHHHH-------HHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 11122222110 0011122 2222322 2 22344999999999999988743322211 1234578889
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHh
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYK 479 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 479 (703)
.+++..++++.|..+|...++.+|..+ ..++.++-+....++..+|...+..++..+..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YI----d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n---------------- 563 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYI----DAYLRLGCMARDKNNLYEASLLLKDALNIDSSN---------------- 563 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhH----HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC----------------
Confidence 999999999999999999999999887 888888877777889999999999999998774
Q ss_pred hHHHHHHHHHHHHhcCCh----hHHHhHhhcCC---CCc-hHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHhC
Q psy6461 480 SIKLWSLYADLEESFGTF----KAYEKGIALFK---WPY-IFDIWNTYLTKFLSRY-----GGTKLERARDLFEQCLEAC 546 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~----~~~e~al~~~~---~~~-~~~~~~~y~~~~~~~~-----~~~~~~~A~~~~~~al~~~ 546 (703)
+.+|..++.++.....+ .-|+..++... ++. ...+...|+..+.... ..+..++|.++|.++|+.+
T Consensus 564 -p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 564 -PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred -cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999888766554 33455554321 111 2222333333222111 1345789999999999999
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHH
Q psy6461 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 547 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (703)
|.|. -+=...|-++...|++.+|+.+|.+..+...+. ..+|...+..+..+|++..|.++|+.+++.+-.+..+.+
T Consensus 643 pkN~--yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 643 PKNM--YAANGIGIVLAEKGRFSEARDIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cchh--hhccchhhhhhhccCchHHHHHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 9982 344678888999999999999999888765533 236777778888889999999999999998764445668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
...+++.....|.+.+|..++.+|+...|.+ ..+--+++-...+
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~--~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSN--TSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc--chHHhHHHHHHHH
Confidence 8889999999999999999999999986655 4444444444433
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-24 Score=209.33 Aligned_cols=457 Identities=16% Similarity=0.283 Sum_probs=300.8
Q ss_pred HHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHH
Q psy6461 21 EEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100 (703)
Q Consensus 21 e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 100 (703)
++.|+.||.|.++|..+++......+++++..||+.+..||.++..|..|++.++.. ++++.+..+|.|||.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--------kdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--------KDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--------hhHHHHHHHHHHHHH
Confidence 777888888888888888888844888888888888888888888888888776542 667777777777776
Q ss_pred hcCCCHHHHHHHHHHHHhc-cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 101 FMHKMPRIWLDYGRFLMDQ-HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
..- +..+|..|+..-.+. |+...++...-+| |+-++...
T Consensus 82 kvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qA--------------------------------y~f~l~ki------- 121 (656)
T KOG1914|consen 82 KVL-NLDLWKLYLSYVRETKGKLFGYREKMVQA--------------------------------YDFALEKI------- 121 (656)
T ss_pred HHh-hHhHHHHHHHHHHHHccCcchHHHHHHHH--------------------------------HHHHHHHh-------
Confidence 544 356666666543331 1122111111111 11111100
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHH
Q psy6461 180 IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLA 259 (703)
Q Consensus 180 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (703)
.-...+..+|..|+.+++ .|...|
T Consensus 122 ----------------------------g~di~s~siW~eYi~FL~----------------------------~vea~g 145 (656)
T KOG1914|consen 122 ----------------------------GMDIKSYSIWDEYINFLE----------------------------GVEAVG 145 (656)
T ss_pred ----------------------------ccCcccchhHHHHHHHHH----------------------------cccccc
Confidence 001223345555555542 233334
Q ss_pred HHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhh
Q psy6461 260 DYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRL 339 (703)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (703)
.+..++ +.+..+.+|++++...-. +...+|..|..||+.++....+++-.. -..+...+...+.+
T Consensus 146 k~ee~Q-RI~~vRriYqral~tPm~--nlEkLW~DY~~fE~~IN~~tarK~i~e------~s~~Ym~AR~~~qe------ 210 (656)
T KOG1914|consen 146 KYEENQ-RITAVRRIYQRALVTPMH--NLEKLWKDYEAFEQEINIITARKFIGE------RSPEYMNARRVYQE------ 210 (656)
T ss_pred cHHHHH-HHHHHHHHHHHHhcCccc--cHHHHHHHHHHHHHHHHHHHHHHHHHh------hCHHHHHHHHHHHH------
Confidence 444444 788889999999976432 567899999999988754332221100 00001111111111
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHh----cCCCccC--CchhHHHHHHHHHHHHcCCh-----
Q psy6461 340 LLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKT----VDPKLAV--GKLHTLWIEFGKFYEVNDQL----- 408 (703)
Q Consensus 340 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~----~~~~~~~--~~~~~~~~~~a~~~~~~~~~----- 408 (703)
.....+.+.. +||.... -...++|.+++++...++-.
T Consensus 211 --------------------------------l~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~ 258 (656)
T KOG1914|consen 211 --------------------------------LQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGT 258 (656)
T ss_pred --------------------------------HHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 0111111211 1111110 01256798899888755421
Q ss_pred ---HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 409 ---EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ--------------EEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 409 ---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
.+..-+|++++...+.++ ++|+.++.++...++ .+++.+++++++...-..
T Consensus 259 ~~~~Rv~yayeQ~ll~l~~~p----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-------- 326 (656)
T KOG1914|consen 259 MLTRRVMYAYEQCLLYLGYHP----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-------- 326 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH--------
Confidence 345556788888777777 999999998877776 677888888887654331
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
+..+++.+++.++..-+ .++.+..-..+++.+.+...+.
T Consensus 327 --------~~~Ly~~~a~~eE~~~~--------------------------------~n~~~~~~~~~~~ll~~~~~~~- 365 (656)
T KOG1914|consen 327 --------NKLLYFALADYEESRYD--------------------------------DNKEKKVHEIYNKLLKIEDIDL- 365 (656)
T ss_pred --------HHHHHHHHHhhHHHhcc--------------------------------cchhhhhHHHHHHHHhhhccCC-
Confidence 35666666666554322 1234667778888877655553
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
..+|+.+.++-.+.-..+.||.+|.+|-+..-..-.+-+..+++.+.+ .++..-|-.+|+-.|+++|++|. ..+.|+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--YVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH--HHHHHH
Confidence 368999999988999999999999999875433222445666666665 47899999999999999999887 889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc-cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 632 EMETKLGEIDRARAIYAHCSQI-CDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
+++...|+-.+||.+|++++.. .+++....+|..|.+||...|+++.+.++-+
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999999999999986 4566678999999999999999999998873
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-24 Score=239.62 Aligned_cols=434 Identities=10% Similarity=-0.018 Sum_probs=281.1
Q ss_pred HhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc
Q psy6461 24 ILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM 102 (703)
Q Consensus 24 l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 102 (703)
-+.+|.+...-.-+..... .|+.++|..+++++....|.+...|..++...... |++++|..+|+++++..
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--------g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--------KQWQNSLTLWQKALSLE 79 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhC
Confidence 3456777777777777777 89999999999999998999999999988877654 88999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 103 HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182 (703)
Q Consensus 103 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 182 (703)
|.++.++..++.++...|++++|...++++++..|. +.. |..++.++...|+++.|+..|+++++.+|++..
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~----- 151 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ----- 151 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----
Confidence 999999999999999999999999999999999995 456 888899998999999999999999999998864
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
++..++..+
T Consensus 152 -----------------------------------------------------------------------~~~~la~~l 160 (765)
T PRK10049 152 -----------------------------------------------------------------------YPTEYVQAL 160 (765)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 333344444
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
...+..+.|...++++.. .|................
T Consensus 161 ~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r------------------------------------------- 196 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVR------------------------------------------- 196 (765)
T ss_pred HHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 455555556555555443 221000000000000000
Q ss_pred hhhhhhcCCCcHHHHHHHHhhhcCCc---hhHHHHHHHHHHhcCCCcc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHh
Q psy6461 343 NSVLLRQNPHNVLEWHKRVRLFDGKP---LDIIRTYTEAVKTVDPKLA-VGKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418 (703)
Q Consensus 343 ~~~~l~~~p~~~~~~~~~~~~~~~~~---~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 418 (703)
+...+.. ...+.+ +.|+..|+.++...+.... .+....+++.....+...|++++|+..|+++
T Consensus 197 ----~~~~~~~---------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 197 ----LSFMPTR---------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred ----hhccccc---------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0000000 000111 4466666666654221110 0112223333222334567788888888887
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChh
Q psy6461 419 TLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFK 498 (703)
Q Consensus 419 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (703)
++..+..| .....| ++.+++..|++++|+..|++++...|.+... .......++.++...
T Consensus 264 l~~~~~~P-~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~-------------~~~~~~~L~~a~~~~---- 323 (765)
T PRK10049 264 KAEGQIIP-PWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADL-------------SDEELADLFYSLLES---- 323 (765)
T ss_pred hccCCCCC-HHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC-------------ChHHHHHHHHHHHhc----
Confidence 77654333 111233 4667777888888888888877766642000 011222222222222
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc-------------chHHHHHHHHHHHHHc
Q psy6461 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR-------------YAKTLYLLYAKLEEEH 565 (703)
Q Consensus 499 ~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~a~~~~~~ 565 (703)
+++++|...++++....|.. .-..++..++.++...
T Consensus 324 -------------------------------g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 324 -------------------------------ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred -------------------------------ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 33477777777777766531 0123556677777777
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
|++++|++++++++...|++ ..++...+......|++++|+..++++++..|+++. +++..+......|++++|..
T Consensus 373 g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~--l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN--LEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH--HHHHHHHHHHHhCCHHHHHH
Confidence 77777777777777777776 446666666666677777777777777777777665 66777777777777777777
Q ss_pred HHHHHhcccCC
Q psy6461 646 IYAHCSQICDP 656 (703)
Q Consensus 646 ~~~~a~~~~~~ 656 (703)
.++++++..|.
T Consensus 449 ~~~~ll~~~Pd 459 (765)
T PRK10049 449 LTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHhCCC
Confidence 77777776433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-23 Score=229.95 Aligned_cols=349 Identities=14% Similarity=0.099 Sum_probs=260.4
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
+|+++.|..+++..+...|.+.+.+..++..... .|++++|...|++++..+|+++.+|..++.++...|++
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~--------~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA--------SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 7888888888888888888888888777755433 37788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
++|...|+++++..| .+..+|...+..+...|++++|+..+++++...|++...
T Consensus 127 ~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a------------------------ 180 (656)
T PRK15174 127 ATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM------------------------ 180 (656)
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH------------------------
Confidence 888888888888888 446777777777778888888888888777777766422
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
+..++ .+...|++++|...+++++...
T Consensus 181 ----------------------------------------------------~~~~~-~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 181 ----------------------------------------------------IATCL-SFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred ----------------------------------------------------HHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence 22222 2456677777777777776654
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh
Q psy6461 283 TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR 362 (703)
Q Consensus 283 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 362 (703)
|..... ...... .+.
T Consensus 208 ~~~~~~--~~~~l~---------------------------------------------------------------~~l 222 (656)
T PRK15174 208 ALERQE--SAGLAV---------------------------------------------------------------DTL 222 (656)
T ss_pred CCcchh--HHHHHH---------------------------------------------------------------HHH
Confidence 321100 000000 000
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH----HHHHHHHhhccCCCCcchHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED----ARLIFDKATLVPYTKVEDLATVWCEWAE 438 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~ 438 (703)
...|+.++|+..|++++.. .| ..+.++..+|..+...|++++ |+..|++++...|+++ .++..++.
T Consensus 223 ~~~g~~~eA~~~~~~al~~-~p-----~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~----~a~~~lg~ 292 (656)
T PRK15174 223 CAVGKYQEAIQTGESALAR-GL-----DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV----RIVTLYAD 292 (656)
T ss_pred HHCCCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH----HHHHHHHH
Confidence 0127777788888887765 23 346788889999999998885 8999999999999887 88999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHH
Q psy6461 439 LELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNT 518 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~ 518 (703)
++.+.|++++|...+++++...|++ ..++..++.++...|++
T Consensus 293 ~l~~~g~~~eA~~~l~~al~l~P~~-----------------~~a~~~La~~l~~~G~~--------------------- 334 (656)
T PRK15174 293 ALIRTGQNEKAIPLLQQSLATHPDL-----------------PYVRAMYARALRQVGQY--------------------- 334 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCH---------------------
Confidence 9999999999999999999999985 67788888777776665
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q psy6461 519 YLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKA 598 (703)
Q Consensus 519 y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 598 (703)
++|+..|++++...|++ ...+...+.++...|++++|++.|+++++..|++.
T Consensus 335 --------------~eA~~~l~~al~~~P~~--~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------ 386 (656)
T PRK15174 335 --------------TAASDEFVQLAREKGVT--SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------ 386 (656)
T ss_pred --------------HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------
Confidence 89999999999999987 44566678888899999999999999999998863
Q ss_pred HHhcCchHHHHHHHHHHHhCCCc
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
...+++|+..+.+++...+..
T Consensus 387 --~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 387 --PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred --hhhHHHHHHHHHHHHHhcCCc
Confidence 124556777777777776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-23 Score=231.24 Aligned_cols=420 Identities=13% Similarity=0.074 Sum_probs=305.4
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..+++.+..+|.+..++..++..+. .+++++|...|+++++.+|.++..|..++...... |++++|...++
T Consensus 36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~--------g~~~eA~~~l~ 107 (765)
T PRK10049 36 TVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA--------GQYDEALVKAK 107 (765)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 4677777778999999999999998 99999999999999999999999999988877654 89999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
++++..|+++. |..++.++...|+.++|...|+++++..| .+..++..++.++...+..+.|+..++++.. .|+..
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P--~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~ 183 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP--QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEK 183 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH
Confidence 99999999999 99999999999999999999999999999 4578888888888888888999999988776 66521
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHH
Q psy6461 177 EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (703)
... .. ..+.. .+..
T Consensus 184 ~~l-~~-------~~~~~----------------------------------------------------------~~r~ 197 (765)
T PRK10049 184 RDL-EA-------DAAAE----------------------------------------------------------LVRL 197 (765)
T ss_pred HHH-HH-------HHHHH----------------------------------------------------------HHHh
Confidence 000 00 00000 0000
Q ss_pred HHHHHHHHhCch---HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHH
Q psy6461 257 SLADYYIRSGLF---ERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333 (703)
Q Consensus 257 ~l~~~~~~~~~~---~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (703)
.++......+++ ++|+..|+.+++..|...+....+.
T Consensus 198 ~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~---------------------------------------- 237 (765)
T PRK10049 198 SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ---------------------------------------- 237 (765)
T ss_pred hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH----------------------------------------
Confidence 011111122233 6788888888865433221100000
Q ss_pred HHhhhhhhhhhhhhhcCCCcHHHHHH-HHh-hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 334 LMERRLLLLNSVLLRQNPHNVLEWHK-RVR-LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 334 ~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
.+++. .+. +..++.++|+..|++++..-++ .|.....| ++.++...|++++|
T Consensus 238 ---------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~---~P~~a~~~--la~~yl~~g~~e~A 291 (765)
T PRK10049 238 ---------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQI---IPPWAQRW--VASAYLKLHQPEKA 291 (765)
T ss_pred ---------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---CCHHHHHH--HHHHHHhcCCcHHH
Confidence 00000 000 1127788999999998775221 12233344 58899999999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHh--hHHHHHHHHH
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYK--SIKLWSLYAD 489 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 489 (703)
+..|++++..+|.++.........++..+...|++++|+.+++++....|.......... +.+. ...++..++.
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~----~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT----SIPNDDWLQGQSLLSQ 367 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----CCCCchHHHHHHHHHH
Confidence 999999998877652111245666666778999999999999999998875321000000 0000 0123333344
Q ss_pred HHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChH
Q psy6461 490 LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLAR 569 (703)
Q Consensus 490 ~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 569 (703)
++... |++++|++++++++...|++ +.+++.+|.++...|+++
T Consensus 368 ~l~~~-----------------------------------g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 368 VAKYS-----------------------------------NDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHc-----------------------------------CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHH
Confidence 44433 45699999999999999999 679999999999999999
Q ss_pred HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 570 HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 570 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
+|++.+++++...|++.. ++...+....+.+++++|..+++++++..|+++.+
T Consensus 411 ~A~~~l~~al~l~Pd~~~--l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 411 AAENELKKAEVLEPRNIN--LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHhhCCCChH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999855 44444556667889999999999999999999863
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-23 Score=226.69 Aligned_cols=341 Identities=13% Similarity=0.033 Sum_probs=271.3
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
+....++..+..+|.+.+++..++.... .|+++.|...|+++++.+|+++..|...+..+... |++++|..
T Consensus 60 ~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~--------g~~~~Ai~ 131 (656)
T PRK15174 60 VGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS--------KQYATVAD 131 (656)
T ss_pred hhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------CCHHHHHH
Confidence 3446789999999999999999998888 99999999999999999999999999998887654 89999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
.|+++++..|+++.+|..++.++...|++++|...+++++...|. ....+..... +...|++++|+..+++++..+|
T Consensus 132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~--~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP--RGDMIATCLS-FLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC--CHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999995 3555544433 5578899999999998887765
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhh
Q psy6461 174 EDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253 (703)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (703)
.... .
T Consensus 209 ~~~~---------------------------------------------------------------------------~ 213 (656)
T PRK15174 209 LERQ---------------------------------------------------------------------------E 213 (656)
T ss_pred Ccch---------------------------------------------------------------------------h
Confidence 3311 1
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHH
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (703)
.+..++..+...|++++|...|++++...|+... .
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---~------------------------------------------ 248 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA---L------------------------------------------ 248 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---H------------------------------------------
Confidence 2233345566677777777777777765554221 1
Q ss_pred HHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchh----HHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC
Q psy6461 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLD----IIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407 (703)
Q Consensus 334 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~----a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 407 (703)
+..++.+ ..|+.++ |+..|++++... | ....++..+|.++...|+
T Consensus 249 -----------------------~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P-----~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 249 -----------------------RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S-----DNVRIVTLYADALIRTGQ 299 (656)
T ss_pred -----------------------HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C-----CCHHHHHHHHHHHHHCCC
Confidence 1111110 1155443 677888888763 3 468999999999999999
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
+++|+..|++++...|.++ .++..++.++.+.|++++|+..|++++...|++ ...+...
T Consensus 300 ~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~-----------------~~~~~~~ 358 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKGVT-----------------SKWNRYA 358 (656)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------hHHHHHH
Confidence 9999999999999999987 889999999999999999999999999999974 3444444
Q ss_pred HHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q psy6461 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL 567 (703)
Q Consensus 488 ~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 567 (703)
+.++...|+ .++|+..|+++++..|++. ...
T Consensus 359 a~al~~~G~-----------------------------------~deA~~~l~~al~~~P~~~--------------~~~ 389 (656)
T PRK15174 359 AAALLQAGK-----------------------------------TSEAESVFEHYIQARASHL--------------PQS 389 (656)
T ss_pred HHHHHHCCC-----------------------------------HHHHHHHHHHHHHhChhhc--------------hhh
Confidence 555555554 4999999999999999973 245
Q ss_pred hHHHHHHHHHHhhccCcc
Q psy6461 568 ARHAMAVYERATGAVLPE 585 (703)
Q Consensus 568 ~~~A~~~~~~al~~~p~~ 585 (703)
+++|+..|.+++...+..
T Consensus 390 ~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 390 FEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 568999999998877654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-21 Score=224.75 Aligned_cols=476 Identities=11% Similarity=0.051 Sum_probs=256.0
Q ss_pred ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHH
Q psy6461 141 HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNEL 220 (703)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 220 (703)
+..++..++..+.+.|+.+.|..+|++....++.+...++..+...|++++|..+|.++.... . .+ ....+..+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~----~P-d~~ty~~l 294 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-V----DP-DLMTITSV 294 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-C----CC-ChhHHHHH
Confidence 345667777788888888888888888766665555667777888888888888888875321 0 00 01111111
Q ss_pred HHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH
Q psy6461 221 CEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE 300 (703)
Q Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~ 300 (703)
+.......+ ...+..+........-.....+++.++..|.+.|++++|..+|++... |+...+..+..+|.....
T Consensus 295 l~a~~~~g~---~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 295 ISACELLGD---ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHhcCC---hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCC
Confidence 111111111 112333444443333334467899999999999999999999998643 444455555444432110
Q ss_pred HHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh-hcCCchhHHHHHHHHH
Q psy6461 301 LSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL-FDGKPLDIIRTYTEAV 379 (703)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~a~~~~~~a~ 379 (703)
...++..|+.+.. ....|+....-.....+ ..|+.+.+.++++.++
T Consensus 370 -----------------------~~~A~~lf~~M~~----------~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 370 -----------------------PDKALETYALMEQ----------DNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred -----------------------HHHHHHHHHHHHH----------hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1112223333211 12224432221111112 2388899999999888
Q ss_pred HhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
+.- . .....++..+...|.+.|++++|+.+|++..+. +. ..|..++..+.+.|+.++|..+|++....
T Consensus 417 ~~g-~----~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~----vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 417 RKG-L----ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DV----ISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HhC-C----CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---Ce----eeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 751 1 123567888889999999999999999987543 33 56999999999999999999999998754
Q ss_pred -CCCCcccccchh------hH-----------HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCC-CCchHHHHHHHH
Q psy6461 460 -PARPVAYHDEAE------TV-----------QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFK-WPYIFDIWNTYL 520 (703)
Q Consensus 460 -~p~~~~~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~-~~~~~~~~~~y~ 520 (703)
.|+.+.+..-.. .+ ...+..+..+...+++++.+.|++ ++|...|. ..++...|...+
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~---~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM---NYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH---HHHHHHHHhcCCChhhHHHHH
Confidence 444221110000 00 000001122233344444444444 22222221 023444455544
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKA 598 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 598 (703)
..+.. .|+.++|.++|+++.+. .|+. ..+..+...+.+.|..++|..+|+.+.+..+-.+....|...++.+
T Consensus 562 ~~~~~---~G~~~~A~~lf~~M~~~g~~Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 562 TGYVA---HGKGSMAVELFNRMVESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 43322 24455555555555542 3432 2344444445555555555555555553322222234555555555
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHH
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDT 678 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 678 (703)
.+.|++++|.++++++ ...|+ ..+|..+...+...|+.+.+....++.+++ +|+ +...+..+..++...|..++
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd---~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~-~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD---PAVWGALLNACRIHRHVELGELAAQHIFEL-DPN-SVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCC-CcchHHHHHHHHHHCCChHH
Confidence 5555555555555543 12232 224555555555555555555555555555 232 34455555555555555555
Q ss_pred HHHHHHHHH
Q psy6461 679 MREMLRIKR 687 (703)
Q Consensus 679 ~~~~~~~~~ 687 (703)
+.++.+..+
T Consensus 710 a~~vr~~M~ 718 (857)
T PLN03077 710 VARVRKTMR 718 (857)
T ss_pred HHHHHHHHH
Confidence 555554333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-21 Score=223.73 Aligned_cols=490 Identities=10% Similarity=-0.004 Sum_probs=301.9
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh--cCCCH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF--MHKMP 106 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 106 (703)
+...+..++..+. .|+++.|+.+|+++.+. +...|..++..+.+ .|++++|..+|+++... .| +.
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~--------~g~~~eAl~lf~~M~~~g~~P-d~ 288 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFE--------NGECLEGLELFFTMRELSVDP-DL 288 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCC-Ch
Confidence 4455666666665 67777777777776532 34456565554433 36777777777777665 34 44
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 186 (703)
..+..++..+...|+.+.+++++..+.+..-. .+..+|..++..+.+.|+++.|.++|++....++.....++..+.+.
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 56666666667777777777777777664321 34566777777777777777777777776554444545566666777
Q ss_pred CCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC
Q psy6461 187 ERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266 (703)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (703)
|++++|..+|.++....-. +.. ..+..+......... ...+..+..............++..+++.|.+.|
T Consensus 368 g~~~~A~~lf~~M~~~g~~--Pd~----~t~~~ll~a~~~~g~---~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 368 GLPDKALETYALMEQDNVS--PDE----ITIASVLSACACLGD---LDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCc----eeHHHHHHHHhccch---HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 7777777777766421100 000 000000110000000 0012222333332222233445666666666666
Q ss_pred chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy6461 267 LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVL 346 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (703)
++++|..+|++... ++.
T Consensus 439 ~~~~A~~vf~~m~~--~d~------------------------------------------------------------- 455 (857)
T PLN03077 439 CIDKALEVFHNIPE--KDV------------------------------------------------------------- 455 (857)
T ss_pred CHHHHHHHHHhCCC--CCe-------------------------------------------------------------
Confidence 66666666665432 222
Q ss_pred hhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-
Q psy6461 347 LRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY- 423 (703)
Q Consensus 347 l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~- 423 (703)
..|..++..+ .|+.++|+..|++++....|+ ...+..+...+...|+++.+..++..+++...
T Consensus 456 --------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd------~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 456 --------ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN------SVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred --------eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC------HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 2222222211 256666777777766543332 22344445555566777777777776666532
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hH
Q psy6461 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KA 499 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 499 (703)
.+. .++..++.+|.+.|++++|..+|++. .|+ ...|+.++..+...|+. ++
T Consensus 522 ~~~----~~~naLi~~y~k~G~~~~A~~~f~~~---~~d------------------~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 522 FDG----FLPNALLDLYVRCGRMNYAWNQFNSH---EKD------------------VVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred ccc----eechHHHHHHHHcCCHHHHHHHHHhc---CCC------------------hhhHHHHHHHHHHcCCHHHHHHH
Confidence 222 45666667777777777777777664 332 56677777777666665 44
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q psy6461 500 YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERAT 579 (703)
Q Consensus 500 ~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 579 (703)
|+++.+.-.. ++...+...+.. +. ..|.+++|..+|+.+.+..+-.+....|..+..++.+.|++++|..++++.
T Consensus 577 f~~M~~~g~~-Pd~~T~~~ll~a-~~--~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 577 FNRMVESGVN-PDEVTFISLLCA-CS--RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHcCCC-CCcccHHHHHHH-Hh--hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 4444432211 222223332221 11 246789999999999965433322568999999999999999999999975
Q ss_pred hccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 580 GAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 580 ~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
...|+ ..+|...+..+...++.+.++...+++++..|++.. .+..+++++.+.|++++|.++.+...+.
T Consensus 652 ~~~pd---~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~--~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 652 PITPD---PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG--YYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 34454 568999999888889999999999999999999877 7889999999999999999999888665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-21 Score=219.21 Aligned_cols=454 Identities=13% Similarity=0.075 Sum_probs=279.7
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh--cCCCH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELP--GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF--MHKMP 106 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 106 (703)
..|...+..+. .|++++|..+|+.+....| -+...+..++.... ..++++.+..++..+++. .| ++
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~--------~~~~~~~a~~l~~~m~~~g~~~-~~ 158 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI--------ALKSIRCVKAVYWHVESSGFEP-DQ 158 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHhCCCc-ch
Confidence 47888888777 8999999999999987543 34555555554432 237788999999998876 35 68
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCHH--HHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDAE--DYIEY 182 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~--~~~~~ 182 (703)
.++..++.++.+.|+++.|+++|++..+ | +...|..++..+.+.|++++|..+|++.++.. |+... .++..
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--R---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC--C---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 9999999999999999999999998643 3 45789999999999999999999999998754 33222 34555
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+...|..+.+.+++..+.... + . ....++..+++.|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g-~---------------------~----------------------~d~~~~n~Li~~y 269 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTG-V---------------------V----------------------GDTFVSCALIDMY 269 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhC-C---------------------C----------------------ccceeHHHHHHHH
Confidence 677888888888776654210 0 0 1124688889999
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
.+.|++++|..+|++... ++...+..+..+|.
T Consensus 270 ~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~---------------------------------------------- 301 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYA---------------------------------------------- 301 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHH----------------------------------------------
Confidence 999999999999987532 22111111111111
Q ss_pred hhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHh-cCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q psy6461 343 NSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKT-VDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV 421 (703)
Q Consensus 343 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 421 (703)
..|+.++|.++|++.... +.| ....+..+...+.+.|++++|.++++.+++.
T Consensus 302 ---------------------~~g~~~eA~~lf~~M~~~g~~p------d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 302 ---------------------LHGYSEEALCLYYEMRDSGVSI------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred ---------------------hCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 016677777777776543 222 2335666666677777777777777777666
Q ss_pred C-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh---
Q psy6461 422 P-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF--- 497 (703)
Q Consensus 422 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 497 (703)
. +.+. .++..++.+|.+.|++++|.++|++..+ |+ ...|+.++..+...|+.
T Consensus 355 g~~~d~----~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d------------------~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 355 GFPLDI----VANTALVDLYSKWGRMEDARNVFDRMPR--KN------------------LISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred CCCCCe----eehHHHHHHHHHCCCHHHHHHHHHhCCC--CC------------------eeeHHHHHHHHHHcCCHHHH
Confidence 3 3333 5677777777777777777777776543 22 45677777776666665
Q ss_pred -hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q psy6461 498 -KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYE 576 (703)
Q Consensus 498 -~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 576 (703)
++|+++.+... .++...+...+.... ..|.+++|.++|+.+.+..+-.+....|..++..+.+.|++++|.++++
T Consensus 411 ~~lf~~M~~~g~-~Pd~~T~~~ll~a~~---~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 411 VEMFERMIAEGV-APNHVTFLAVLSACR---YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 22222221111 111122222221111 1234456666666555432211112345555555556666666665555
Q ss_pred HHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 577 RATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 577 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
++ ...|+ ..+|...+..+...|+++.|+.+++++++..|++.. .+..+++++.+.|++++|.++++...+
T Consensus 487 ~~-~~~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~--~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 487 RA-PFKPT---VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN--NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HC-CCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc--chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 43 11222 335555555555555666666666666555555433 455555555566666666666555543
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-20 Score=181.88 Aligned_cols=238 Identities=19% Similarity=0.260 Sum_probs=148.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+...+...|..+|.. +| ....+|+.++..|...++.++-.+.|.+|..++|.++ .+|..-+++.+-.++
T Consensus 340 g~~~~a~~d~~~~I~l-~~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKL-DP-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFLLQQ 409 (606)
T ss_pred CCchhhhhhHHHHHhc-Cc-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHHHHH
Confidence 5555555555555554 22 1334455555555555555555555555555555555 555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|..-|++++.++|.+ .- .|++..+.
T Consensus 410 ~e~A~aDF~Kai~L~pe~-----------------~~-----------------------------------~~iQl~~a 437 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPEN-----------------AY-----------------------------------AYIQLCCA 437 (606)
T ss_pred HHHHHHHHHHHhhcChhh-----------------hH-----------------------------------HHHHHHHH
Confidence 555555555555555542 11 11111222
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc------chHHHHHHHHHHHHH
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP------EEMFEMFNIYIKKAA 599 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~ 599 (703)
.|..++++++...|+.+.+..|.. ++++..+|+++...+++++|.+.|+.|+..-|. +..+.+-.+.+.+..
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 222345678888888888888887 678888888888888888888888888888777 445555555555554
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+ ++++.|.++..+|++.+|.... .+..++.++.++|+.++|+.+|+++...... ...+...+.--+..
T Consensus 516 k-~d~~~a~~Ll~KA~e~Dpkce~--A~~tlaq~~lQ~~~i~eAielFEksa~lArt--~~E~~~a~s~aeAA 583 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIELDPKCEQ--AYETLAQFELQRGKIDEAIELFEKSAQLART--ESEMVHAYSLAEAA 583 (606)
T ss_pred h-hhHHHHHHHHHHHHccCchHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 4 7788888888888888887544 7788888888888888888888888776432 24444444444433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-20 Score=209.93 Aligned_cols=432 Identities=12% Similarity=0.054 Sum_probs=312.6
Q ss_pred hhHHHHhcC--CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 19 PYEEEILRN--PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKE--LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 19 ~~e~~l~~~--P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
.|+...... +.+...+..++.... .++++.+..++..+.+. .| +...+..++..+.+ .|+++.|..
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k--------~g~~~~A~~ 179 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVK--------CGMLIDARR 179 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhc--------CCCHHHHHH
Confidence 445544433 346677888888777 88999999999988763 44 56666666665543 489999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC-
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF- 172 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 172 (703)
+|+++.. | +...|..++..+.+.|++++|..+|++.++..+. .+...+..++..+...|..+.+.+++..+++..
T Consensus 180 lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 180 LFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 9999853 4 6788999999999999999999999999986543 345677788888888899999998888776543
Q ss_pred -CCC--HHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhcc
Q psy6461 173 -PED--AEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249 (703)
Q Consensus 173 -p~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (703)
|+. ...++..+.+.|++++|.++|+.+..
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------------------------------------------------ 287 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------------------------------------------------ 287 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------------------------------------------------
Confidence 322 23568889999999999999987631
Q ss_pred chhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHH
Q psy6461 250 QLGHLWNSLADYYIRSGLFERARDIYEEAIQTV--TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELR 327 (703)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (703)
.+...|+.++..|.+.|+.++|..+|++..... |+...+..+...+..
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~------------------------------ 337 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR------------------------------ 337 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------------------------------
Confidence 113589999999999999999999999977642 332222211111110
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhc-CCCccCCchhHHHHHHHHHHHHcC
Q psy6461 328 LARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTV-DPKLAVGKLHTLWIEFGKFYEVND 406 (703)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~ 406 (703)
.|..++|.+++..+++.- ++ ...++..++..|.+.|
T Consensus 338 -------------------------------------~g~~~~a~~i~~~m~~~g~~~------d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 338 -------------------------------------LALLEHAKQAHAGLIRTGFPL------DIVANTALVDLYSKWG 374 (697)
T ss_pred -------------------------------------ccchHHHHHHHHHHHHhCCCC------CeeehHHHHHHHHHCC
Confidence 166677777777776652 22 2345667777777888
Q ss_pred ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 407 QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
++++|..+|++..+. +. ..|+.++..+.+.|+.++|.++|++..+ ..|+ ...+
T Consensus 375 ~~~~A~~vf~~m~~~---d~----~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd------------------~~T~ 429 (697)
T PLN03081 375 RMEDARNVFDRMPRK---NL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN------------------HVTF 429 (697)
T ss_pred CHHHHHHHHHhCCCC---Ce----eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------------------HHHH
Confidence 888888888876542 22 5688888888888888888888887664 3444 4556
Q ss_pred HHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy6461 485 SLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAK 560 (703)
Q Consensus 485 ~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 560 (703)
...+......|.+ ++|+.+.+...-.+....|...+..+.+ .|++++|.++++++- ..|+ ...|..+..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r---~G~~~eA~~~~~~~~-~~p~---~~~~~~Ll~ 502 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR---EGLLDEAYAMIRRAP-FKPT---VNMWAALLT 502 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh---cCCHHHHHHHHHHCC-CCCC---HHHHHHHHH
Confidence 6666666666665 4455555433333444445555443333 467899999988742 3344 468999999
Q ss_pred HHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q psy6461 561 LEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL 618 (703)
Q Consensus 561 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (703)
....+|+.+.|..++++.++..|.+. ..|...+..+.+.|++++|.++++.+.+..
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~--~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKL--NNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCC--cchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999863 466777888888999999999999988764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-20 Score=175.82 Aligned_cols=498 Identities=15% Similarity=0.202 Sum_probs=275.5
Q ss_pred CCCccceeeeccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy6461 2 ESTGFTGIYTTENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80 (703)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~ 80 (703)
.++-.....+-++++.+.+...|+.||++...|.++++++. ++..++.+++|+....-+|--+..|..|+.-++..
T Consensus 13 sa~kvae~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~--- 89 (660)
T COG5107 13 SADKVAEPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR--- 89 (660)
T ss_pred ccccccCcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh---
Confidence 34444566778889999999999999999999999999999 99999999999999999999999999998766543
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh--HHHHHH----HHHHHH---hCCcccccccHHHHHHH
Q psy6461 81 KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI--TQTRHV----FDRALR---ALPITQHHRVWPLYLSF 151 (703)
Q Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~A~~~----~~~al~---~~p~~~~~~~~~~~~~~ 151 (703)
+++..+..+|.|+|+..- +..+|..|+..--+.++. .++|.. |+=.+. ..| .....|..|+.|
T Consensus 90 -----~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~--~s~~~W~ey~~f 161 (660)
T COG5107 90 -----KDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEP--QSENYWDEYGLF 161 (660)
T ss_pred -----hhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccc--cccchHHHHHHH
Confidence 778888889999887755 377888777654332211 011211 111111 223 234445554444
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccc
Q psy6461 152 VKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKI 231 (703)
Q Consensus 152 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~ 231 (703)
..
T Consensus 162 le------------------------------------------------------------------------------ 163 (660)
T COG5107 162 LE------------------------------------------------------------------------------ 163 (660)
T ss_pred HH------------------------------------------------------------------------------
Confidence 31
Q ss_pred ccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6461 232 RSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIA 311 (703)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 311 (703)
.|..++.|. ++.+.+..+..|.+++...-+ +...+|..|..||........+++.
T Consensus 164 ----------------------~~~~~~kwE-eQqrid~iR~~Y~ral~tP~~--nleklW~dy~~fE~e~N~~TarKfv 218 (660)
T COG5107 164 ----------------------YIEELGKWE-EQQRIDKIRNGYMRALQTPMG--NLEKLWKDYENFELELNKITARKFV 218 (660)
T ss_pred ----------------------hccccccHH-HHHHHHHHHHHHHHHHcCccc--cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222223333 445566677777777764322 4456777777777665433222211
Q ss_pred hCCCCCCcchHHHHHHHHHHHHHHhh-----hhhhhhhhhhhcCCC-cHHHHHHHHhhhc-------CCc--hhHHHHHH
Q psy6461 312 ENDTPSEEDDIELELRLARLEDLMER-----RLLLLNSVLLRQNPH-NVLEWHKRVRLFD-------GKP--LDIIRTYT 376 (703)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~-~~~~~~~~~~~~~-------~~~--~~a~~~~~ 376 (703)
-. -......+...+.++..- +...++.+.-..-|. ....|+..+.... |+. ....-+|+
T Consensus 219 ge------~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~ 292 (660)
T COG5107 219 GE------TSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHN 292 (660)
T ss_pred cc------cCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHH
Confidence 00 001112222222222110 000000000000111 2333555555432 222 23444677
Q ss_pred HHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 377 EAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARA 456 (703)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 456 (703)
+++..++- .+++|+.+..+....++-++|...-+++...+| .+-..|+..+...++-++....|+++
T Consensus 293 q~~~y~~~------~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-------sL~~~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 293 QILDYFYY------AEEVWFDYSEYLIGISDKQKALKTVERGIEMSP-------SLTMFLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHHhhh------hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-------chheeHHHHHhhcccHHHHhhhHHHH
Confidence 77766432 467888888888888888888888888876655 45666777776777777777777766
Q ss_pred hcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHh--c---CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCC
Q psy6461 457 TATPARPVAYHDEAETVQARVYKSIKLWSLYADLEES--F---GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTK 531 (703)
Q Consensus 457 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~ 531 (703)
++.- ...|..+... . |+++...+.+ .......-.+|+.++....+. ..
T Consensus 360 ~q~L-----------------------~r~ys~~~s~~~s~~D~N~e~~~Ell-~kr~~k~t~v~C~~~N~v~r~---~G 412 (660)
T COG5107 360 TQDL-----------------------KRKYSMGESESASKVDNNFEYSKELL-LKRINKLTFVFCVHLNYVLRK---RG 412 (660)
T ss_pred HHHH-----------------------HHHHhhhhhhhhccccCCccccHHHH-HHHHhhhhhHHHHHHHHHHHH---hh
Confidence 5422 1111111110 0 0110000000 000011223444444332322 22
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH-HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEE-EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQI 610 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (703)
++.||.+|-++-+.--.. ..+|+..|.++. ..|++..|-.+|+-++..+|++ ...-..|+.+.+..++-..||.+
T Consensus 413 l~aaR~~F~k~rk~~~~~--h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~--~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 413 LEAARKLFIKLRKEGIVG--HHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDS--TLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HHHHHHHHHHHhccCCCC--cceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhCcHHHHHHH
Confidence 466666666655432111 234444444432 3566666666666666666665 22334566666666666666666
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhH
Q psy6461 611 YERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFW 663 (703)
Q Consensus 611 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 663 (703)
|+++++..-+....++|-.++..+..-|+...+..+=++.....|.++-..++
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF 541 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVF 541 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHH
Confidence 66666655444344466666666666666666666666666655554333333
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-20 Score=179.85 Aligned_cols=239 Identities=15% Similarity=0.192 Sum_probs=205.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
....|.++.-.|+.-.|..-|..+++++|..+ .+|+.++.+|...++.++-...|.+|..++|.+
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n----------- 393 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN----------- 393 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-----------
Confidence 45557888889999999999999999999887 889999999999999999999999999999985
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
+++|+..+++..-.+++ ++|..-|+++++++|.+ .-.
T Consensus 394 ------~dvYyHRgQm~flL~q~-----------------------------------e~A~aDF~Kai~L~pe~--~~~ 430 (606)
T KOG0547|consen 394 ------PDVYYHRGQMRFLLQQY-----------------------------------EEAIADFQKAISLDPEN--AYA 430 (606)
T ss_pred ------CchhHhHHHHHHHHHHH-----------------------------------HHHHHHHHHHhhcChhh--hHH
Confidence 78899999988776654 99999999999999999 568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC------cchHHHHH
Q psy6461 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE------EPTRQMCL 628 (703)
Q Consensus 555 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~ 628 (703)
++.++..+.+.+.++++++.|+.+.+.+|.. ++.+..+...+..++++++|.+.|.+|+.+.|. +...-+.-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 9999999999999999999999999999987 567888888888889999999999999999997 54422333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 696 (703)
..+.+.++ +++.+|.+++.+|+++ +|. ...-+..++.++.+.|+.++|.++++++-.+.++-.+-
T Consensus 509 a~l~~qwk-~d~~~a~~Ll~KA~e~-Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 509 ALLVLQWK-EDINQAENLLRKAIEL-DPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred hHhhhchh-hhHHHHHHHHHHHHcc-Cch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 33333334 8999999999999999 454 68889999999999999999999999888888765543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-18 Score=195.10 Aligned_cols=488 Identities=11% Similarity=0.053 Sum_probs=288.0
Q ss_pred HHhhcCchhHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 39 EHKKNAPKAIINTIYERSLKELPGS--YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 39 ~~~~~~~~~~a~~~~e~al~~~P~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.+...|+++.|+.+|+.+.+...-. .-.+..++.... ..|.+++|..+|+.+.. | +...|..++..+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~--------~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~ 447 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK--------KQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVC 447 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--------HCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHH
Confidence 3334778888888888877654322 222222222221 23667778777776654 4 567777888888
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCHH--HHHHHHHhcCCHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDAE--DYIEYLSSIERLDEA 192 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~--~~~~~~~~~~~~~~A 192 (703)
.+.|+++.|+++|+++.+.... .+...|..++..+.+.|+.+.|.++|+++.+.. |+... .++..+.+.|++++|
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 8888888888888887775432 345677777777778888888888888777543 33222 345667778888888
Q ss_pred HHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHH
Q psy6461 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272 (703)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 272 (703)
..+|..+.... -.| +..+|..++..|.+.|++++|.
T Consensus 527 l~lf~~M~~~G----------------------v~P----------------------D~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 527 FGAYGIMRSKN----------------------VKP----------------------DRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHcC----------------------CCC----------------------CHHHHHHHHHHHHHCCCHHHHH
Confidence 88877764210 011 1246777788888888888888
Q ss_pred HHHHHHHhh----cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy6461 273 DIYEEAIQT----VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLR 348 (703)
Q Consensus 273 ~~~~~~l~~----~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (703)
.+|++.... .|+...+..+...+.
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~---------------------------------------------------- 590 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACA---------------------------------------------------- 590 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHH----------------------------------------------------
Confidence 888776542 232111111111110
Q ss_pred cCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCc
Q psy6461 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKV 426 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~ 426 (703)
-.|+.++|.++|+++.+.-. ......|..++..|.+.|++++|..+|++..+. .|+ .
T Consensus 591 ---------------k~G~ldeA~elf~~M~e~gi-----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~ 649 (1060)
T PLN03218 591 ---------------NAGQVDRAKEVYQMIHEYNI-----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-E 649 (1060)
T ss_pred ---------------HCCCHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Confidence 01666677777776655410 113456666677777777777777777776654 222 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHh
Q psy6461 427 EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEK 502 (703)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~ 502 (703)
..|..++..+.+.|++++|.++++++.+..... +...|..++..+.+.|++ ++|++
T Consensus 650 ----~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p----------------d~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 650 ----VFFSALVDVAGHAGDLDKAFEILQDARKQGIKL----------------GTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 556667777777777777777777766543211 256666777777766665 23333
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
+.+.- -.++...|...+..+.. .|++++|.++|+++... .|+ ...|..+...+.+.|++++|..++..+++
T Consensus 710 M~~~g-~~PdvvtyN~LI~gy~k---~G~~eeAlelf~eM~~~Gi~Pd---~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 710 IKSIK-LRPTVSTMNALITALCE---GNQLPKALEVLSEMKRLGLCPN---TITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHcC-CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22211 12344555555544433 35678999999988764 455 35677777888888999999999988887
Q ss_pred ccCcchHHHHHHHHHHHHHH----hcC-------------------chHHHHHHHHHHHhC--CCcchHHHHHHHHHHHH
Q psy6461 581 AVLPEEMFEMFNIYIKKAAE----IYG-------------------IPKTRQIYERAIESL--PEEPTRQMCLKFAEMET 635 (703)
Q Consensus 581 ~~p~~~~~~~~~~~~~~~~~----~~~-------------------~~~A~~~~~~al~~~--p~~~~~~~~~~~a~~~~ 635 (703)
.....+ ..++...+.++.+ .+. .+.|..+|+++++.. |+. ..+........
T Consensus 783 ~Gi~pd-~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~---~T~~~vL~cl~ 858 (1060)
T PLN03218 783 DGIKPN-LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM---EVLSQVLGCLQ 858 (1060)
T ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhc
Confidence 643322 3355555554432 111 245666777777653 442 23444445555
Q ss_pred HcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q psy6461 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN-EDTMREMLRIKRSVQ 690 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~ 690 (703)
+.+..+.+..+++..... +...+...++.+.+- .|. .++|-.+++.+....
T Consensus 859 ~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g---~~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 859 LPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDG---FGEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred ccccHHHHHHHHHHhccC-CCCcchhhhHHHHHh---hccChHHHHHHHHHHHHcC
Confidence 566677776666653322 211134455554442 243 346666665555433
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-18 Score=179.46 Aligned_cols=567 Identities=16% Similarity=0.144 Sum_probs=331.7
Q ss_pred HHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 35 LRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 35 ~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
+.-+...- .|+++.|..++..+++++|..+..|..++..+..+ |+.+++...+-.|--.+|++...|...+
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--------Gd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--------GDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--------ccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 33344444 79999999999999999999999999999988765 8999999999888888999999999999
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH--------HHHHHHHh
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE--------DYIEYLSS 185 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~ 185 (703)
....++|++++|+-.|.||++..|.+ .........++.+.|+...|...|.+++..+|.... ..++++..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSN--WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999953 444455578888999999999999999999983221 12355555
Q ss_pred cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHh
Q psy6461 186 IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRS 265 (703)
Q Consensus 186 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (703)
.+.-+.|.+.+...+... .. ....+..+.++.+++..
T Consensus 293 ~~~~e~a~~~le~~~s~~------------------------~~-------------------~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKE------------------------KD-------------------EASLEDLNILAELFLKN 329 (895)
T ss_pred hhHHHHHHHHHHHHHhhc------------------------cc-------------------cccccHHHHHHHHHHHh
Confidence 555577777776665210 00 01123456677777777
Q ss_pred CchHHHHHHHHHHHhh--cCCcccHHHHHHHHHHHHHHHHH-HHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 266 GLFERARDIYEEAIQT--VTTVRDFTQVFDAYAQFEELSLN-KRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 266 ~~~~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
..++.|....-..... .++...+ .. .+.+... ...-.++...+.. ....-+..++-.++..-..-. ++
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~----~~---~~~~~~~~~~~~~~~~~~s~~-l~v~rl~icL~~L~~~e~~e~-ll 400 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEW----DT---DERRREEPNALCEVGKELSYD-LRVIRLMICLVHLKERELLEA-LL 400 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhh----hh---hhhccccccccccCCCCCCcc-chhHhHhhhhhcccccchHHH-HH
Confidence 7777765544332221 1111110 00 0000000 0000000000000 000000000000000000000 00
Q ss_pred hhhhhhcC--C-CcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 343 NSVLLRQN--P-HNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 343 ~~~~l~~~--p-~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
.- ....+ | +.+...+..+..+. |.+.+|+..|...+.. ++. ++..+|...|.+|...|.++.|...|++
T Consensus 401 ~~-l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~----~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 401 HF-LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGY----QNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HH-HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccc----cchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 00 12233 3 35666666666554 8899999999987765 332 3577999999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
++...|.+. .+.+.++.++.+.|++++|.+++.+...-++.+.. . .++.+..++...+.+++...|..
T Consensus 475 vl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e--~------~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 475 VLILAPDNL----DARITLASLYQQLGNHEKALETLEQIINPDGRNAE--A------CAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh--h------ccccHHHHHHHHHHHHHHHhhhH
Confidence 999999998 89999999999999999999999987633322210 0 00011122223333333333222
Q ss_pred ---------------------------------------------------------hHHHhHhhcC-------CCCchH
Q psy6461 498 ---------------------------------------------------------KAYEKGIALF-------KWPYIF 513 (703)
Q Consensus 498 ---------------------------------------------------------~~~e~al~~~-------~~~~~~ 513 (703)
...++++..- -.....
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 1111111100 001133
Q ss_pred HHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHh----CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-----cC
Q psy6461 514 DIWNTYLTKFLS-RYGGTKLERARDLFEQCLEA----CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA-----VL 583 (703)
Q Consensus 514 ~~~~~y~~~~~~-~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p 583 (703)
+-|-.|...+.. ....+++.+|..+...++.. .+.....++-.....+-...+++..|.....-.+.. .|
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 345444433222 22345677777777777663 222211122211122223445555555555544444 22
Q ss_pred cchHHHHHH-----------------------------------HHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 584 PEEMFEMFN-----------------------------------IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL 628 (703)
Q Consensus 584 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 628 (703)
. ...+|. .+.......+.+..|...|-++...+|++|.+-+.+
T Consensus 703 ~--q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 703 Y--QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 1 122333 222222334667788888888888888888766666
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 629 KFAEMETKLGE--------IDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 629 ~~a~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+.+.+...+++ .-++..++.|-.++-.++.....+-+.++..-..|-.--|.+..
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YY 843 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYY 843 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 66655555443 33455555555444333224556666777777777777776666
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-19 Score=176.10 Aligned_cols=442 Identities=18% Similarity=0.254 Sum_probs=301.6
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
-+++.|..||..+...|.++.+|..+++.+. .++++...++|.|+|..- .+.++|..|+.+..+.-.... |--+.
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDLW~lYl~YVR~~~~~~~---~~r~~ 109 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDLWKLYLSYVRETKGKLF---GYREK 109 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHccCcc---hHHHH
Confidence 4577889999999999999999999999998 999999999999999754 459999999988665322111 11123
Q ss_pred HHHHHHHHHHh---cCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 91 VNNTFERSLVF---MHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 91 A~~~~~~al~~---~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
..+.|+-++.. ++.+.++|..|+.++.. +++++..|++|+|||. .|..+...+|..|..|+..-+.
T Consensus 110 m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~-tPm~nlEkLW~DY~~fE~~IN~- 187 (656)
T KOG1914|consen 110 MVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV-TPMHNLEKLWKDYEAFEQEINI- 187 (656)
T ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHHHHHHH-
Confidence 44556656554 57899999999999854 4588999999999999 8987789999999999866542
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhc------cccc-----ccccCCchhhhHHHHHHHHhcC
Q psy6461 159 ETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVN------KESF-----VSKHGKSNHQLWNELCEMISQN 227 (703)
Q Consensus 159 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~~-----~~~~~~~~~~~w~~~~~~l~~~ 227 (703)
-.|+++.. .....|..|+++++++.+ ...+ .++...+.+++|..++.+.+.+
T Consensus 188 ~tarK~i~-----------------e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 188 ITARKFIG-----------------ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHH-----------------hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 23333221 123344555555555432 1111 1112223455566666666655
Q ss_pred ccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHH
Q psy6461 228 PDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRM 307 (703)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 307 (703)
|-...+.. . --.+..-+|++++...+-. ..+|..+..+-....+-..
T Consensus 251 pL~t~~~~------------------~------------~~~Rv~yayeQ~ll~l~~~---peiWy~~s~yl~~~s~l~~ 297 (656)
T KOG1914|consen 251 PLRTLDGT------------------M------------LTRRVMYAYEQCLLYLGYH---PEIWYDYSMYLIEISDLLT 297 (656)
T ss_pred Cccccccc------------------H------------HHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhHHHH
Confidence 54321000 0 0012334566666644332 2455555554443321100
Q ss_pred HHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCcc
Q psy6461 308 EEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLA 387 (703)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 387 (703)
. .-.+|.. ..-.+++.++|+++|.....
T Consensus 298 ~--------------------------------------~~d~~~a-----------~~~t~e~~~~yEr~I~~l~~--- 325 (656)
T KOG1914|consen 298 E--------------------------------------KGDVPDA-----------KSLTDEAASIYERAIEGLLK--- 325 (656)
T ss_pred H--------------------------------------hcccccc-----------hhhHHHHHHHHHHHHHHHHH---
Confidence 0 0000000 01246788999999887432
Q ss_pred CCchhHHHHHHHHHHHHcCC---hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 388 VGKLHTLWIEFGKFYEVNDQ---LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
.+..++..++.+.+..-+ .+..-.+|++++.+...++ .-+|+.|..+-.+......|+.+|.+|.+.....
T Consensus 326 --~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~---tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~- 399 (656)
T KOG1914|consen 326 --ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL---TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR- 399 (656)
T ss_pred --HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC---ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-
Confidence 356678888888775444 7888899999998855444 2679999999999999999999999998765431
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
..++..-+-++.. -+++..-|-.+|+-+++
T Consensus 400 ----------------hhVfVa~A~mEy~----------------------------------cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 400 ----------------HHVFVAAALMEYY----------------------------------CSKDKETAFRIFELGLK 429 (656)
T ss_pred ----------------chhhHHHHHHHHH----------------------------------hcCChhHHHHHHHHHHH
Confidence 3444444333322 23455889999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA-VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (703)
..++. +..-..|..++...|+-+.|+.+|++++.. .|.+-...+|..++.++..-|++..++++-++-....|
T Consensus 430 kf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 430 KFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99998 678888999999999999999999999987 34344568999999999999999999999888888777
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-19 Score=199.06 Aligned_cols=426 Identities=10% Similarity=0.083 Sum_probs=267.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
+...+++.+...+ +...++.....+.+.|++++|+++|+...+..........+..+...+.+.|..+.|..+++....
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4455555555544 345555555666788999999999999877543222233445556677788889999998887765
Q ss_pred hCCCCHH--HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc
Q psy6461 171 LFPEDAE--DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT 248 (703)
Q Consensus 171 ~~p~~~~--~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (703)
|+... .++..+...|++++|.++|..+.... . .
T Consensus 435 --pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l---------------~--------------------- 469 (1060)
T PLN03218 435 --PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-------L---------------K--------------------- 469 (1060)
T ss_pred --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------C---------------C---------------------
Confidence 54332 35666788999999999998875210 0 1
Q ss_pred cchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 249 DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV--TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
....+|..++..|.+.|+.+.|..+|++..... |+...+..+..+|..
T Consensus 470 -pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k----------------------------- 519 (1060)
T PLN03218 470 -ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR----------------------------- 519 (1060)
T ss_pred -CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----------------------------
Confidence 123578888888999999999999998877642 332222222111110
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHh-cCCCccCCchhHHHHHHHHHHHHc
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKT-VDPKLAVGKLHTLWIEFGKFYEVN 405 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~~~~~~~~a~~~~~~ 405 (703)
.|+.++|..+|+++... +.| +...|..+...+.+.
T Consensus 520 --------------------------------------~G~~eeAl~lf~~M~~~Gv~P------D~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 520 --------------------------------------AGQVAKAFGAYGIMRSKNVKP------DRVVFNALISACGQS 555 (1060)
T ss_pred --------------------------------------CcCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHC
Confidence 14555555555554432 111 233455555555555
Q ss_pred CChHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhH
Q psy6461 406 DQLEDARLIFDKATLV----PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSI 481 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 481 (703)
|++++|.++|+++... .|+ . ..|..++..+.+.|++++|.++|++..+..... +.
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~----vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p----------------~~ 614 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-H----ITVGALMKACANAGQVDRAKEVYQMIHEYNIKG----------------TP 614 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----------------Ch
Confidence 5555555555555431 121 1 445555555555555555555555555443211 24
Q ss_pred HHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC--CCcchHHHH
Q psy6461 482 KLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC--PPRYAKTLY 555 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 555 (703)
..|...+..+.+.|++ .+|+++...-- .++...|...+..+.. .+++++|.++++.+.+.. |+ ...|
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k---~G~~eeA~~l~~eM~k~G~~pd---~~ty 687 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGH---AGDLDKAFEILQDARKQGIKLG---TVSY 687 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 4555555555555554 22222222111 1223333333332221 355699999999998863 33 4689
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHH
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGA--VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFA 631 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a 631 (703)
..++..+.+.|++++|..+|+.+... .|+ ...|...+..+.+.|++++|..+|+++... .|+ ...|..++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd---vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd---~~Ty~sLL 761 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPT---VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN---TITYSILL 761 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 99999999999999999999988654 343 467999999999999999999999988765 455 33677778
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 632 EMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
..+.+.|+++.|..++..+.+.. ...+..+++.+..++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~ 800 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Confidence 88889999999999999998763 2224677777766544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-17 Score=185.16 Aligned_cols=479 Identities=13% Similarity=0.050 Sum_probs=309.8
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
..|..+..-..-+.... +|+++.|+..|+++++.+|.+......++.+... .|+.++|+..+++++.-.|.
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~--------~G~~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW--------AGRDQEVIDVYERYQSSMNI 100 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH--------cCCcHHHHHHHHHhccCCCC
Confidence 46776665554444444 9999999999999999999995333365555433 28899999999999944455
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH--HH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI--EY 182 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~~ 182 (703)
+.......+..+...|++++|..+|+++++.+|. ++.++..++..+...++.++|+..+++++..+|....... .+
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 5555556688999999999999999999999995 4778888888888899999999999999999998665422 22
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+...++..+|+..++++++. +|.. .+++..+....
T Consensus 179 ~~~~~~~~~AL~~~ekll~~------------------------~P~n---------------------~e~~~~~~~~l 213 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRL------------------------APTS---------------------EEVLKNHLEIL 213 (822)
T ss_pred HHhcchHHHHHHHHHHHHHh------------------------CCCC---------------------HHHHHHHHHHH
Confidence 33456776788888888642 2221 24556666666
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CCcchHHHHHHHHHHHHHHhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTP-SEEDDIELELRLARLEDLMERRLLL 341 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (703)
.+.|-...|.++.++--...... + ..+......-+... .....+. ..........+++.++.++.+
T Consensus 214 ~~~~~~~~a~~l~~~~p~~f~~~-~--~~~l~~~~~a~~vr------~a~~~~~~~~~r~~~~d~ala~~~~l~~~---- 280 (822)
T PRK14574 214 QRNRIVEPALRLAKENPNLVSAE-H--YRQLERDAAAEQVR------MAVLPTRSETERFDIADKALADYQNLLTR---- 280 (822)
T ss_pred HHcCCcHHHHHHHHhCccccCHH-H--HHHHHHHHHHHHHh------hcccccccchhhHHHHHHHHHHHHHHHhh----
Confidence 66676666665555422211111 1 11111111111100 0000111 111122344556666665321
Q ss_pred hhhhhhhcCCCcHHHHHH----HHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 342 LNSVLLRQNPHNVLEWHK----RVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIF 415 (703)
Q Consensus 342 ~~~~~l~~~p~~~~~~~~----~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 415 (703)
...+|.....|.. ++-. ..+++.++++.|+..-..-.+ .| ..+...+|..|...++.++|..+|
T Consensus 281 -----~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~---~P--~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 281 -----WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK---MP--DYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred -----ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC---CC--HHHHHHHHHHHHhcCCcHHHHHHH
Confidence 2345654444422 2211 228899999999875533111 12 335666789999999999999999
Q ss_pred HHhhccCCC---CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHH
Q psy6461 416 DKATLVPYT---KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492 (703)
Q Consensus 416 ~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
+.++...|. ++.++ .....+.-.++..+++++|..++++..+..|..+......
T Consensus 351 ~~~~~~~~~~~~~~~~~-~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~---------------------- 407 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDL-LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP---------------------- 407 (822)
T ss_pred HHHhhccccccCCCcch-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC----------------------
Confidence 999886431 11111 1123333344678899999999999988666321100000
Q ss_pred hcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHH
Q psy6461 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 493 ~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
...|.|+........+.. ..-.|++++|.+.+++.+...|.| ..+++.+|.++...|.+.+|.
T Consensus 408 ------------~~~pn~d~~~~~~l~a~~---~~~~gdl~~Ae~~le~l~~~aP~n--~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 408 ------------GKEPNDDWIEGQTLLVQS---LVALNDLPTAQKKLEDLSSTAPAN--QNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred ------------CCCCCccHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHH
Confidence 000111111111111100 002467799999999999999999 679999999999999999999
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 573 AVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
..++.+....|.+..+. .+.+.....++++++|..+....++..|+++.+
T Consensus 471 ~~~k~a~~l~P~~~~~~--~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 471 QELKAVESLAPRSLILE--RAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhhCCccHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 99999999999885443 344444555789999999999999999998863
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-17 Score=183.68 Aligned_cols=447 Identities=11% Similarity=-0.019 Sum_probs=304.6
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
+....|+++++.+|.+......++.+.. .|+.++|+..+++++.-.|.+...-...+...... |++++|..
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~--------gdyd~Aie 123 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE--------KRWDQALA 123 (822)
T ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc--------CCHHHHHH
Confidence 3446899999999999644447777777 89999999999999944444444444445555443 89999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
+|+++++.+|+++.++..++..+...++.++|...+++++..+|.. ......+.++...++..+|+..|+++++.+|
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---QNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---HHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999952 2234445555556667679999999999999
Q ss_pred CCHHHHHHHH---HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 174 EDAEDYIEYL---SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 174 ~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
++.+.+..++ ...|-..-|.+....- +.+.+. ....|+.. +.+.+
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~----~~~~~l~~----------------~~~a~--------- 248 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSA----EHYRQLER----------------DAAAE--------- 248 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCH----HHHHHHHH----------------HHHHH---------
Confidence 9998765554 4566555555444321 111000 00111111 00000
Q ss_pred hhhHHHHHHHHHH-----HhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 251 LGHLWNSLADYYI-----RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 251 ~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
...++.... +---.+.|..-++.++...+..+.....|... .+ .+++ ..
T Consensus 249 ----~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~-~~-Drl~--------------------aL 302 (822)
T PRK14574 249 ----QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA-RI-DRLG--------------------AL 302 (822)
T ss_pred ----HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH-HH-HHHH--------------------HH
Confidence 001110000 11134557777777777443322211222111 00 0000 01
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHc
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN 405 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 405 (703)
..+..+..+++....+-.. -..-|..+..|..-+.+..+.+++|..+|++++..-++....+........+--.+...
T Consensus 303 ~~r~r~~~vi~~y~~l~~~--~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAE--GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHhhhHHHHHHHHHHhhhc--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 1122222333222221111 22347888888888888889999999999998875322111111122234555566789
Q ss_pred CChHHHHHHHHHhhccCC------------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 406 DQLEDARLIFDKATLVPY------------TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+++++|..+.++..+..| .| ++........+..+.-.|+..+|.+.+++.+...|.+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn-~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n---------- 449 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN-DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN---------- 449 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Confidence 999999999999988555 12 2344666777888888999999999999999999995
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
..++..+++++...|.. .+|++.++.+....|++ ..
T Consensus 450 -------~~l~~~~A~v~~~Rg~p-----------------------------------~~A~~~~k~a~~l~P~~--~~ 485 (822)
T PRK14574 450 -------QNLRIALASIYLARDLP-----------------------------------RKAEQELKAVESLAPRS--LI 485 (822)
T ss_pred -------HHHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHhhhCCcc--HH
Confidence 88999999998887664 99999999999999998 56
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM 587 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 587 (703)
+....+...+..|++.+|..+.+..+...|++..
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 8899999999999999999999999999999854
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-15 Score=160.08 Aligned_cols=608 Identities=13% Similarity=0.074 Sum_probs=378.4
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..+..+|+++|.+..+|..++..+. +|+.+++....=.|--.+|.+.+.|..++..-.++ |.+++|+-.|.
T Consensus 160 ~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~--------~~i~qA~~cy~ 231 (895)
T KOG2076|consen 160 EILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL--------GNINQARYCYS 231 (895)
T ss_pred HHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--------ccHHHHHHHHH
Confidence 6788999999999999999999999 99999999998889899999999999999887665 88999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc---ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ---HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
+|++.+|.+-........++.+.|+...|...|.++++..|... ...+-..++..+...++-+.|.+.++.++...-
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999210 011222335555666666999999999988332
Q ss_pred C-----CHHHHHHHHHhcCCHHHHHHHHHHhhcc----cc--c-------------ccccCCchhh--hHHHHHHHHhcC
Q psy6461 174 E-----DAEDYIEYLSSIERLDEAAVKLAYIVNK----ES--F-------------VSKHGKSNHQ--LWNELCEMISQN 227 (703)
Q Consensus 174 ~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~--~-------------~~~~~~~~~~--~w~~~~~~l~~~ 227 (703)
+ +...++.+++...+++.|.........+ ++ + .......++. .....+++..-+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 2 2225677788888888887776555431 00 0 0000000111 111112222111
Q ss_pred ccccccccHHHHHHhHhhhh--ccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHH
Q psy6461 228 PDKIRSLNVDAIIRGGLRRY--TDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNK 305 (703)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~ 305 (703)
.. ...+.++....... +...++++..+++.+.+.|++.+|..+|-.++...+... .-+|...+.......
T Consensus 392 ~~----e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--~~vw~~~a~c~~~l~-- 463 (895)
T KOG2076|consen 392 ER----ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--AFVWYKLARCYMELG-- 463 (895)
T ss_pred cc----chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--hhhhHHHHHHHHHHh--
Confidence 11 12233344333333 445677899999999999999999999999887655432 446655555544332
Q ss_pred HHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcC
Q psy6461 306 RMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVD 383 (703)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~ 383 (703)
....++..|+.+ +...|++.++...++.++. |+.++|.++++..+.- +
T Consensus 464 -----------------e~e~A~e~y~kv------------l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~-D 513 (895)
T KOG2076|consen 464 -----------------EYEEAIEFYEKV------------LILAPDNLDARITLASLYQQLGNHEKALETLEQIINP-D 513 (895)
T ss_pred -----------------hHHHHHHHHHHH------------HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC-C
Confidence 122234455554 7889999999999998876 8899888888875421 1
Q ss_pred ----CCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhh----cc---CC-----------------------------
Q psy6461 384 ----PKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT----LV---PY----------------------------- 423 (703)
Q Consensus 384 ----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~---~~----------------------------- 423 (703)
+...+.....+...++..+...|+.++=+.+-...+ ++ .|
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 111222234455555666666665444211100000 00 00
Q ss_pred --------------------------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccc--cchhhHHH
Q psy6461 424 --------------------------TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYH--DEAETVQA 475 (703)
Q Consensus 424 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~~~~~~~ 475 (703)
-+.++-.+++..++..+...++.++|..+...|+....-...-. ....-++.
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 00000123444455556677889999999888887543210000 00000000
Q ss_pred H--H-HhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 476 R--V-YKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 476 ~--~-~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
. + ..++..|+.|++....+-++ ..++....+|..+...+.... +--.-...+.++....|++. +
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~~~---------~~~~~q~~l~n~~~s~~~~~~---q~v~~~R~~~~~~~~~~~~~-~ 740 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQFQF---------YLDVYQLNLWNLDFSYFSKYG---QRVCYLRLIMRLLVKNKDDT-P 740 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCccCC-c
Confidence 0 0 11233333333322211000 012345566773333222221 11223345555555666663 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHH--HHHHHHHHHHh------cCchHHHHHHHHHHHhCCCcchH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEM--FNIYIKKAAEI------YGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
.+.+.+|+.....+.+..|+..|-++....|+++...+ -..++....+. -..-++.....+-.+..-.....
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 58888999999999999999999999999999764433 33444444331 11223333343343433221233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----------ChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 625 QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----------TAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
++....|+.+...|=..-|...|++++...|++. ....--++.-+++..|+...|+.+++
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 4889999999999999999999999999853321 13334456677888899998888774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=175.42 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
++..++..+...|++++|...|+++++..|.+. ..+..++.++.+.|++++|...|++++...|..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------- 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCV----RASILLGDLALAQGDYAAAIEALERVEEQDPEY---------- 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh----------
Confidence 345667777778888888888888888877765 678888888888888888888888888777653
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
....+...+.++...|+ +++|...++++++..|+. .
T Consensus 248 ------~~~~~~~l~~~~~~~g~-----------------------------------~~~A~~~l~~~~~~~p~~---~ 283 (389)
T PRK11788 248 ------LSEVLPKLMECYQALGD-----------------------------------EAEGLEFLRRALEEYPGA---D 283 (389)
T ss_pred ------HHHHHHHHHHHHHHcCC-----------------------------------HHHHHHHHHHHHHhCCCc---h
Confidence 13444555555554444 488888888888888875 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH---hcCchHHHHHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE---IYGIPKTRQIYERAIE 616 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~ 616 (703)
.+..++.++...|++++|..+++++++..|++.. +..++..... .|+.+++..++++.++
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~---~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG---FHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH---HHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 4477888888888888888888888888887532 2222222221 3355566555555553
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-16 Score=152.94 Aligned_cols=495 Identities=19% Similarity=0.266 Sum_probs=284.4
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-c--------------------CchhHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-N--------------------APKAIINTIYERSLKELPGSYKLWYNY 70 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~--------------------~~~~~a~~~~e~al~~~P~~~~~w~~~ 70 (703)
.|.+.|..||-.|+..-.+.+.++.|+.++. . .-..+...+|.+|+..+|.|+.+|..|
T Consensus 32 ~Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~y 111 (568)
T KOG2396|consen 32 EIVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSY 111 (568)
T ss_pred HHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4566778899999877778899999998875 1 113567889999999999999999999
Q ss_pred HHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccC-hHHHHHHHHHHHHhCCcccccccHHHHH
Q psy6461 71 LKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHK-ITQTRHVFDRALRALPITQHHRVWPLYL 149 (703)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~ 149 (703)
+.+..+. +.+.+..++|.+++..+|++|.+|+..+.+++.-+. ++.||.+|.++|+.+|. .+.+|..|.
T Consensus 112 i~f~kk~--------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd--sp~Lw~eyf 181 (568)
T KOG2396|consen 112 IAFCKKK--------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD--SPKLWKEYF 181 (568)
T ss_pred HHHHHHh--------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 9996543 557889999999999999999999999999998764 99999999999999994 599999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcc
Q psy6461 150 SFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPD 229 (703)
Q Consensus 150 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~ 229 (703)
+++...- ++ ...-++.+..+..+.. ....+.+.+-..+..-.+. ..+
T Consensus 182 rmEL~~~--~K-l~~rr~~~g~~~~~~~------~eie~ge~~~~~~~~s~~~-----~~~------------------- 228 (568)
T KOG2396|consen 182 RMELMYA--EK-LRNRREELGLDSSDKD------EEIERGELAWINYANSVDI-----IKG------------------- 228 (568)
T ss_pred HHHHHHH--HH-HHHHHHHhccccchhH------HHHHHHHHHHHhhccchhh-----hhc-------------------
Confidence 9976531 11 1122233333333221 0000000000000000000 000
Q ss_pred ccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Q psy6461 230 KIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEE 309 (703)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 309 (703)
.+.+.. +. -....-..++..+ .+++......|+.. .+|...+. +..+.....
T Consensus 229 ~~k~~e-~~-------------------~~~~~d~~kel~k--~i~d~~~~~~~~np---~~~~~laq---r~l~i~~~t 280 (568)
T KOG2396|consen 229 AVKSVE-LS-------------------VAEKFDFLKELQK--NIIDDLQSKAPDNP---LLWDDLAQ---RELEILSQT 280 (568)
T ss_pred chhhcc-hH-------------------HHHHHHHHHHHHH--HHHHHHhccCCCCC---ccHHHHHH---HHHHHHHHh
Confidence 000000 00 0000000011111 11111111122211 01110000 000000000
Q ss_pred hhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCCccC
Q psy6461 310 IAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPKLAV 388 (703)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~ 388 (703)
. ..+.+-..- ..+. .+......+|+.++..++
T Consensus 281 d--------------------------------------l~~~~~~~~----~~~~~~k~s~~~~v~ee~v~~l~----- 313 (568)
T KOG2396|consen 281 D--------------------------------------LQHTDNQAK----AVEVGSKESRCCAVYEEAVKTLP----- 313 (568)
T ss_pred h--------------------------------------ccchhhhhh----chhcchhHHHHHHHHHHHHHHhh-----
Confidence 0 000000000 0000 112334567888877653
Q ss_pred CchhHHHHHHHHHHHH-----cC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCC
Q psy6461 389 GKLHTLWIEFGKFYEV-----ND-QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARAT-ATPA 461 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~-----~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~p 461 (703)
....|-.|..+... .| .+..-..+|+.+........ ...-.|+...+......+++.+..... ....
T Consensus 314 --t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~----~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~ 387 (568)
T KOG2396|consen 314 --TESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSE----CLYKQYSVLLLCLNTLNEAREVAVKLTTELFR 387 (568)
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHhccchHhHHHHHhhHHHhc
Confidence 34556555555432 22 44556667777666543332 333444444333333334444333322 2333
Q ss_pred CCcccccchhhHHHHHHhhHHHHHHHHHHHHhc-CCh-hHHHh---HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHH
Q psy6461 462 RPVAYHDEAETVQARVYKSIKLWSLYADLEESF-GTF-KAYEK---GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERAR 536 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~e~---al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~ 536 (703)
+ +..+|..+.+.+... .++ -.|++ .++.++..+....|...+. ... -..+.-.
T Consensus 388 ~-----------------s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~---~ds--l~~~~~~ 445 (568)
T KOG2396|consen 388 D-----------------SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASE---GDS--LQEDTLD 445 (568)
T ss_pred c-----------------hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhh---ccc--hhHHHHH
Confidence 3 478898888877633 333 22333 3334444556666666551 000 0012222
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH--hcCchHHHHHHHHH
Q psy6461 537 DLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE--IYGIPKTRQIYERA 614 (703)
Q Consensus 537 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a 614 (703)
.++...++....+. .++-..|-.+....|...+|+++|.+.....|.+ +.++...++++.. .-++.-+|.+|+.|
T Consensus 446 ~Ii~a~~s~~~~~~-~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~s--l~l~r~miq~e~~~~sc~l~~~r~~yd~a 522 (568)
T KOG2396|consen 446 LIISALLSVIGADS-VTLKSKYLDWAYESGGYKKARKVYKSLQELPPFS--LDLFRKMIQFEKEQESCNLANIREYYDRA 522 (568)
T ss_pred HHHHHHHHhcCCce-eehhHHHHHHHHHhcchHHHHHHHHHHHhCCCcc--HHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 33444444333332 3577778888889999999999999998888876 6789999999865 34578889999999
Q ss_pred HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 615 IESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 615 l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+..+..++. +|+.|-.++...|..+.+-.+|.||++...++
T Consensus 523 ~~~fg~d~~--lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 523 LREFGADSD--LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhCCChH--HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 998886544 99999999999999999999999999876554
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-16 Score=150.38 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=100.1
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCH
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (703)
+.+.|+..|++|++.. | .+..+|...|.-|...++...|+..|++|+.++|.+- ..|+.+|+.|--.+-.
T Consensus 345 eHEKAv~YFkRALkLN-p-----~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----RAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLN-P-----KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----RAWYGLGQAYEIMKMH 414 (559)
T ss_pred hHHHHHHHHHHHHhcC-c-----chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH----HHHhhhhHHHHHhcch
Confidence 3455566666666542 2 3455677777777777777777777777777777664 6677777777666666
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHH
Q psy6461 447 EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSR 526 (703)
Q Consensus 447 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~ 526 (703)
.=|+-.|++|+...|+| +++|..+++++...+++
T Consensus 415 ~YaLyYfqkA~~~kPnD-----------------sRlw~aLG~CY~kl~~~----------------------------- 448 (559)
T KOG1155|consen 415 FYALYYFQKALELKPND-----------------SRLWVALGECYEKLNRL----------------------------- 448 (559)
T ss_pred HHHHHHHHHHHhcCCCc-----------------hHHHHHHHHHHHHhccH-----------------------------
Confidence 77777777777777764 67777777776665544
Q ss_pred hCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 527 YGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 527 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
++|...|.+++.....+ ...+..+|+++.+.++.++|...|++.++
T Consensus 449 ------~eAiKCykrai~~~dte--~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 449 ------EEAIKCYKRAILLGDTE--GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ------HHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67777777777765554 34667777777777777777777776665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-16 Score=167.40 Aligned_cols=289 Identities=17% Similarity=0.159 Sum_probs=220.7
Q ss_pred hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 364 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
..|++++|+..|++++.. .| .+..++..++.++...|++++|..++++++...+.........+..++..+.+.
T Consensus 47 ~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKV-DP-----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHHHHHHHhc-Cc-----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 348899999999999986 33 356788999999999999999999999998864332212235688889999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHH
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y 519 (703)
|++++|..+|+++++..|.+ ...+..++.++...|++ ..++++++..|.+........|
T Consensus 121 g~~~~A~~~~~~~l~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFA-----------------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred CCHHHHHHHHHHHHcCCcch-----------------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 99999999999999887763 67788888888888886 5556665554443332222222
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAA 599 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 599 (703)
..........+++++|...|+++++..|++ ...+..++.++...|++++|...|++++...|.+. ...+...+..+.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~l~~~~~ 260 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-SEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-HHHHHHHHHHHH
Confidence 222222234678999999999999999987 56899999999999999999999999999887643 245566667777
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH---cCCH
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT---HGNE 676 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~g~~ 676 (703)
..|++++|...++++++..|+.. .+..++.++.+.|++++|..+++++++.. |+ .. .+..+...... +|..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~p~~~---~~~~la~~~~~~g~~~~A~~~l~~~l~~~-P~-~~-~~~~l~~~~~~~~~~g~~ 334 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEYPGAD---LLLALAQLLEEQEGPEAAQALLREQLRRH-PS-LR-GFHRLLDYHLAEAEEGRA 334 (389)
T ss_pred HcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-cC-HH-HHHHHHHHhhhccCCccc
Confidence 88999999999999999999763 45889999999999999999999999984 44 23 34444444332 4577
Q ss_pred HHHHHHHH
Q psy6461 677 DTMREMLR 684 (703)
Q Consensus 677 ~~~~~~~~ 684 (703)
+++..+++
T Consensus 335 ~~a~~~~~ 342 (389)
T PRK11788 335 KESLLLLR 342 (389)
T ss_pred hhHHHHHH
Confidence 77776664
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=180.34 Aligned_cols=260 Identities=18% Similarity=0.324 Sum_probs=225.6
Q ss_pred HHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHHHHHcCCHHHH
Q psy6461 371 IIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-PYTKVEDLATVWCEWAELELRAGQEEAA 449 (703)
Q Consensus 371 a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A 449 (703)
-.+.|++.+.. .| +..-+|+.|..++...++.++||++.++||.. ++...++...+|..|.+++...|.-+..
T Consensus 1443 saeDferlvrs-sP-----NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1443 SAEDFERLVRS-SP-----NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CHHHHHHHHhc-CC-----CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 44566666665 33 56779999999999999999999999999986 6666566678999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCC
Q psy6461 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGG 529 (703)
Q Consensus 450 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~ 529 (703)
.++|+||-+.+.. ..++..+..++...+.+
T Consensus 1517 ~kVFeRAcqycd~------------------~~V~~~L~~iy~k~ek~-------------------------------- 1546 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA------------------YTVHLKLLGIYEKSEKN-------------------------------- 1546 (1710)
T ss_pred HHHHHHHHHhcch------------------HHHHHHHHHHHHHhhcc--------------------------------
Confidence 9999999998753 57777777777766554
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
++|-++|+.+++..... ..+|+.|+.++.+...-+.|+.++.+|++..|......+-..+++++.+.|+.+++|.
T Consensus 1547 ---~~A~ell~~m~KKF~q~--~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1547 ---DEADELLRLMLKKFGQT--RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred ---hhHHHHHHHHHHHhcch--hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence 99999999999998855 5799999999999999999999999999999996667888899999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6461 610 IYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC-DPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS 688 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 688 (703)
+|+-.|...|.-.. +|.-|++++.+.|+.+-+|.+|+|++.+. ++.....++..|.+||.++|+...++.|..+|..
T Consensus 1622 lfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999998655 99999999999999999999999998763 4454789999999999999999999999877776
Q ss_pred HHHHh
Q psy6461 689 VQAQY 693 (703)
Q Consensus 689 ~~~~~ 693 (703)
-..+.
T Consensus 1700 Yv~s~ 1704 (1710)
T KOG1070|consen 1700 YVESI 1704 (1710)
T ss_pred HHHHh
Confidence 44333
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-14 Score=146.87 Aligned_cols=443 Identities=14% Similarity=0.194 Sum_probs=271.0
Q ss_pred eccCCCchhhHHHHhcCCCChHHHHHH-------------HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6461 11 TTENEEDLPYEEEILRNPFSVKHWLRY-------------IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76 (703)
Q Consensus 11 ~~~~~~~~~~e~~l~~~P~~~~~w~~~-------------~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~ 76 (703)
...+.......+.+...|.+...|... +..-. ..+.+.++.+|...|..+|....+|..|+.++..
T Consensus 12 ~~~~~~~~~~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~k 91 (577)
T KOG1258|consen 12 RKEDTQFSTDNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYK 91 (577)
T ss_pred hccccccCccchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHH
Confidence 333334455566666667666666553 33333 3556899999999999999999999999998765
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCcc-cccccHHHHHHHHHh
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPIT-QHHRVWPLYLSFVKS 154 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~ 154 (703)
. |..+.+..+|+|++...|.+..+|+.|..+... .|+.+..+..|++|+.....+ ..+.+|..|++++..
T Consensus 92 l--------g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 92 L--------GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred h--------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 4 778999999999999999999999999999877 467888999999999987742 348899999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHH----HHHHHh-----cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHh
Q psy6461 155 HAVPETAVRVFRRYLKLFPEDAEDY----IEYLSS-----IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMIS 225 (703)
Q Consensus 155 ~~~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~ 225 (703)
++++.....+|++.++.--.....+ .+.+.. .-..+++.+.=.....
T Consensus 164 qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~------------------------ 219 (577)
T KOG1258|consen 164 QKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAE------------------------ 219 (577)
T ss_pred cccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHh------------------------
Confidence 9999999999999998533222222 111111 0011111111000000
Q ss_pred cCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHH-HhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHH
Q psy6461 226 QNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI-RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLN 304 (703)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~ 304 (703)
+....+.+...+.|...++--. ..+..+.+.....+.+... ..+|......+
T Consensus 220 ----------------~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~------~~~~~~s~~~~----- 272 (577)
T KOG1258|consen 220 ----------------RSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH------EKVYQKSEEEE----- 272 (577)
T ss_pred ----------------hhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH------HHHHHhhHhHH-----
Confidence 0000000000111111111110 1122333333333322210 11222222111
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhc
Q psy6461 305 KRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTV 382 (703)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~ 382 (703)
.+...++..+. ||+++.. ..++.+...|..++.+.. |+...+.-.|++|+-.+
T Consensus 273 ---------------------~kr~~fE~~Ik-rpYfhvk---pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c 327 (577)
T KOG1258|consen 273 ---------------------EKRWGFEEGIK-RPYFHVK---PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC 327 (577)
T ss_pred ---------------------HHHHhhhhhcc-ccccccC---cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH
Confidence 12334444332 2333221 233446777777776543 88888888888887654
Q ss_pred CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q psy6461 383 DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPA 461 (703)
Q Consensus 383 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 461 (703)
. .+..+|+.|+.+.+..|+.+-|..++.++.++. |+.+ .+.+.++.+....|+++.|+.++++.....|
T Consensus 328 A------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~----~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 328 A------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP----IIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred h------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc----HHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 2 467788888888888888888888888887773 4444 7778888888888888888888888887777
Q ss_pred CCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHH---H
Q psy6461 462 RPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARD---L 538 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~---~ 538 (703)
+. ..+-..++.++.+.|++ +.+.. +
T Consensus 398 g~-----------------v~~~l~~~~~e~r~~~~-----------------------------------~~~~~~~~l 425 (577)
T KOG1258|consen 398 GL-----------------VEVVLRKINWERRKGNL-----------------------------------EDANYKNEL 425 (577)
T ss_pred ch-----------------hhhHHHHHhHHHHhcch-----------------------------------hhhhHHHHH
Confidence 64 45555666666666654 44442 2
Q ss_pred HHHHHHhCCC-cchHHHHHHHHHHHH-HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 539 FEQCLEACPP-RYAKTLYLLYAKLEE-EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 539 ~~~al~~~p~-~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
+.....-.-+ .....+++.++.+-. -.++.+.|+.++..+....|++ ..+|..++.++...
T Consensus 426 ~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~--k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC--KVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc--HHHHHHHHHHHHhC
Confidence 2222211111 112456677777743 3567777777777777777766 45666777776553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=173.67 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=103.4
Q ss_pred cCCchhHHHHHHHHHHhc-CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 365 DGKPLDIIRTYTEAVKTV-DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 365 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
.|++++|.+++.+.+... +| ..+.+|..++.+.+..++++.|+..|++++..++.++ ..+..++.+ ...
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~-----~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPP-----DDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP----QDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccc----ccccccccc-ccc
Confidence 389999999998776654 23 3568999999999999999999999999999988776 677788887 689
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHH
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~ 523 (703)
+++++|..++.++.+..++ +..+..++.++...+++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~------------------~~~l~~~l~~~~~~~~~-------------------------- 126 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD------------------PRYLLSALQLYYRLGDY-------------------------- 126 (280)
T ss_dssp ---------------------------------------------H-HHHTT-H--------------------------
T ss_pred ccccccccccccccccccc------------------cchhhHHHHHHHHHhHH--------------------------
Confidence 9999999999998887754 56677777776666654
Q ss_pred HHHhCCCChhHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 524 LSRYGGTKLERARDLFEQCLEAC--PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 524 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
+++..+++++.... |.+ +.+|..+|.++.+.|+.++|+..|+++++..|++ ..+...++.+.+..
T Consensus 127 ---------~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 127 ---------DEAEELLEKLEELPAAPDS--ARFWLALAEIYEQLGDPDKALRDYRKALELDPDD--PDARNALAWLLIDM 193 (280)
T ss_dssp ---------HHHHHHHHHHHH-T---T---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHC
Confidence 77777777766544 334 5688888888888888888888888888888887 34566666677777
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHH
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMRE 681 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 681 (703)
|+.++++.++....+..|+++. +|..++..+...|+.++|..+|+++++..|. ++.+..+++++....|..+.|.+
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~--~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~--d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPD--LWDALAAAYLQLGRYEEALEYLEKALKLNPD--DPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCC--HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHT----------
T ss_pred CChHHHHHHHHHHHHHCcCHHH--HHHHHHHHhcccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 8888888888888888777776 7888888888888888888888888887443 48888888888888888888887
Q ss_pred HHHH
Q psy6461 682 MLRI 685 (703)
Q Consensus 682 ~~~~ 685 (703)
+.+.
T Consensus 270 ~~~~ 273 (280)
T PF13429_consen 270 LRRQ 273 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7643
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-14 Score=139.37 Aligned_cols=218 Identities=20% Similarity=0.215 Sum_probs=177.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
-...|.+|.-.++.++|+..|+++++++|+.. .+|..+|.=++..++...|...|++|+.++|.|
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~----~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D----------- 397 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYL----SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD----------- 397 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchh----HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----------
Confidence 34457888889999999999999999999987 999999999999999999999999999999995
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
.+.|+..++.++..+- +-=|.-.|++|++..|++ +.+
T Consensus 398 ------yRAWYGLGQaYeim~M-----------------------------------h~YaLyYfqkA~~~kPnD--sRl 434 (559)
T KOG1155|consen 398 ------YRAWYGLGQAYEIMKM-----------------------------------HFYALYYFQKALELKPND--SRL 434 (559)
T ss_pred ------HHHHhhhhHHHHHhcc-----------------------------------hHHHHHHHHHHHhcCCCc--hHH
Confidence 8999999998886543 256888999999999999 679
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-----CCcchHHHHHH
Q psy6461 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL-----PEEPTRQMCLK 629 (703)
Q Consensus 555 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~ 629 (703)
|..+|+++++.++.++|++-|++++.....+. ..+.-.+....+.++..+|...|++.++.. -+...+.+.+-
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999999999999998877643 344455666777889999999999999842 11113345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
++..+.+.+++++|-..-.+++.- ++ ..++++.+++-.|+.+.
T Consensus 513 LA~~f~k~~~~~~As~Ya~~~~~~-~~------------------e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 513 LAEYFKKMKDFDEASYYATLVLKG-ET------------------ECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcC-Cc------------------hHHHHHHHHHHHHHhcC
Confidence 888999999999998876666554 22 24566666666666553
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-15 Score=145.94 Aligned_cols=453 Identities=13% Similarity=0.062 Sum_probs=286.0
Q ss_pred hhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHH----HHHHHHHhcCChH
Q psy6461 86 PSYEDVNNTFERSLVF--MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP----LYLSFVKSHAVPE 159 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----~~~~~~~~~~~~~ 159 (703)
.-+.+|...|+-.++. .|+...+-.+.+++++++.++.+|.+.|+-||...|.- +...-. .++-...+.|.++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhcCeeEEecccch
Confidence 5577899999998876 69888888899999999999999999999999999963 222222 2222234568999
Q ss_pred HHHHHHHHHHhhCCCCHHHH--HHHHHhcCCHHHHHHHHHHhhccccccccc------CCchhhhHHHHH--HHHhcCcc
Q psy6461 160 TAVRVFRRYLKLFPEDAEDY--IEYLSSIERLDEAAVKLAYIVNKESFVSKH------GKSNHQLWNELC--EMISQNPD 229 (703)
Q Consensus 160 ~A~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~w~~~~--~~l~~~~~ 229 (703)
.|+..|+..++..|+....+ +-.+.-.|+-++-.+.|.++++.|.++... ......+..+.+ +-++.-..
T Consensus 294 dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred hhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999999987654 223456788999999999999887764321 110001100000 00000000
Q ss_pred ccccccHHHHHHhHhhhhc------------------cc-h----hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcc
Q psy6461 230 KIRSLNVDAIIRGGLRRYT------------------DQ-L----GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVR 286 (703)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~------------------~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 286 (703)
.-++...+++++...-..| .+ . .++-..-+--+++.|+++.|+++++-.-+......
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 0000011122221110000 00 0 01111223445566777777766654333322111
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc
Q psy6461 287 DFT-QVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD 365 (703)
Q Consensus 287 ~~~-~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 365 (703)
..+ .-.+ .+.++.
T Consensus 454 saaa~nl~------------------------------------------------------------------~l~flq 467 (840)
T KOG2003|consen 454 SAAANNLC------------------------------------------------------------------ALRFLQ 467 (840)
T ss_pred HHHhhhhH------------------------------------------------------------------HHHHHh
Confidence 000 0000 001111
Q ss_pred --CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 366 --GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 366 --~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
.++..|...-..++.. +. -++-+..+-+.....+|++++|...|+.++..+.++. +..+..+..+...
T Consensus 468 ggk~~~~aqqyad~aln~-dr-----yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~ 537 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNI-DR-----YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEAL 537 (840)
T ss_pred cccchhHHHHHHHHHhcc-cc-----cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHh
Confidence 1222333333333322 11 1222334445555668899999999999998877666 7777888778888
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHH
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKF 523 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~ 523 (703)
|+.++|+..|-+...+--+ +..+.+..+.+++...+
T Consensus 538 ~~ldeald~f~klh~il~n-----------------n~evl~qianiye~led--------------------------- 573 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLN-----------------NAEVLVQIANIYELLED--------------------------- 573 (840)
T ss_pred cCHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHhhC---------------------------
Confidence 9999999988876665544 36777777777665544
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 524 LSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 524 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
+.+|.+++.++....|++ +.+...++.++.+.|+-.+|...+-.....+|.+...--|.+ .+++.-.-
T Consensus 574 --------~aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~--ayyidtqf 641 (840)
T KOG2003|consen 574 --------PAQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA--AYYIDTQF 641 (840)
T ss_pred --------HHHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH--HHHHhhHH
Confidence 378999999999999988 668889999999999999999988888888998865444443 22233335
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
.++|..+|+++--.-|+. +.-.+..+.++++.|++.+|..+|+..-..+|.+ .+....+.++....|.
T Consensus 642 ~ekai~y~ekaaliqp~~--~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped--ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQ--SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED--LDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcCccH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc--hHHHHHHHHHhccccc
Confidence 678899999988888863 2233556778888999999999998887776654 6666667777766663
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-14 Score=143.54 Aligned_cols=452 Identities=19% Similarity=0.261 Sum_probs=273.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcc-----cCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHH
Q psy6461 53 YERSLKELPGSYKLWYNYLKLRRKQVK-----GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRH 127 (703)
Q Consensus 53 ~e~al~~~P~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 127 (703)
....+...|++..+|......-...-. .......+.+.++.+|...|...|.....|..++..+.+.|..+.+.+
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~ 100 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVK 100 (577)
T ss_pred cchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345566777777777544322111100 011122445778999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccccHHHHHHHHHh-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccc
Q psy6461 128 VFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFV 206 (703)
Q Consensus 128 ~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 206 (703)
+|+|+++..| ....+|..|+.+... .|+++..+..|++|......+-
T Consensus 101 Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF------------------------------ 148 (577)
T KOG1258|consen 101 VFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDF------------------------------ 148 (577)
T ss_pred HHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccch------------------------------
Confidence 9999999999 458999999888764 4666777788888776542221
Q ss_pred cccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcc
Q psy6461 207 SKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVR 286 (703)
Q Consensus 207 ~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 286 (703)
.+.+.|..++.+...++++.....+|++.+.....
T Consensus 149 -------------------------------------------~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~-- 183 (577)
T KOG1258|consen 149 -------------------------------------------LSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH-- 183 (577)
T ss_pred -------------------------------------------hccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh--
Confidence 11367888888888888899999999998876322
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-
Q psy6461 287 DFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD- 365 (703)
Q Consensus 287 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~- 365 (703)
.+...|..|..+.+...... +...+.+++.+.-...+..........+.|-..+.-..
T Consensus 184 ~~~~~f~~f~~~l~~~~~~~---------------------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~ 242 (577)
T KOG1258|consen 184 QLNRHFDRFKQLLNQNEEKI---------------------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTD 242 (577)
T ss_pred HhHHHHHHHHHHHhcCChhh---------------------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccC
Confidence 34566666655543311000 00111111110000000000000011111111111000
Q ss_pred --CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH----HHHHHHHHHH
Q psy6461 366 --GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL----ATVWCEWAEL 439 (703)
Q Consensus 366 --~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~ 439 (703)
+-.++......+.+. .--+++.........+..|+..++.+..++..+ -..|..|..+
T Consensus 243 ~s~~l~~~~~~l~~~~~----------------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 243 PSKSLTEEKTILKRIVS----------------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred ccchhhHHHHHHHHHHH----------------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 011111111111110 001223334455667777787777643333221 2458888888
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHH
Q psy6461 440 ELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 440 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y 519 (703)
....|+++.+...|++++--+..- ..+|..|+......|..
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y-----------------~efWiky~~~m~~~~~~---------------------- 347 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALY-----------------DEFWIKYARWMESSGDV---------------------- 347 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhh-----------------HHHHHHHHHHHHHcCch----------------------
Confidence 888888888888888888776552 57777777766665543
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAA 599 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 599 (703)
+-|..++.++++..-... +.+.+.++.++...|+++.|+.++++.....|+- +.+-..++.++.
T Consensus 348 -------------~~~~~~~~~~~~i~~k~~-~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~--v~~~l~~~~~e~ 411 (577)
T KOG1258|consen 348 -------------SLANNVLARACKIHVKKT-PIIHLLEARFEESNGNFDDAKVILQRIESEYPGL--VEVVLRKINWER 411 (577)
T ss_pred -------------hHHHHHHHhhhhhcCCCC-cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch--hhhHHHHHhHHH
Confidence 667777777777643332 4678888888888888888888888888777654 455566777777
Q ss_pred HhcCchHHHH---HHHHHHHhCCCcc-hHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 600 EIYGIPKTRQ---IYERAIESLPEEP-TRQMCLKFAEMETK-LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 600 ~~~~~~~A~~---~~~~al~~~p~~~-~~~~~~~~a~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+.|+.+.+.. ++......--++. .....+.++++-.+ .++.+.|+.++..+.++.++ +..+|..+..|+...+
T Consensus 412 r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~--~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 412 RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD--CKVLYLELIRFELIQP 489 (577)
T ss_pred HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc--cHHHHHHHHHHHHhCC
Confidence 7778777773 3333332211111 22356666665544 46788888888888888544 4778888888887776
Q ss_pred C
Q psy6461 675 N 675 (703)
Q Consensus 675 ~ 675 (703)
.
T Consensus 490 ~ 490 (577)
T KOG1258|consen 490 S 490 (577)
T ss_pred c
Confidence 4
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=161.42 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYA-QFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
-+...+|..|.+.+++++|..+|+.+-+..|-..+...+|.... ++.+.. .+
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------------------------~L--- 406 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------------------------AL--- 406 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------------------------HH---
Confidence 34556899999999999999999988877764332222221110 011100 00
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLE 409 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 409 (703)
.++..-++..+|..+..|...+.++. ++.+.|+++|++|++. +| +...+|..+|.-+....+++
T Consensus 407 --------s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp-----~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 407 --------SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DP-----RFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred --------HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CC-----ccchhhhhcCChhhhhHHHH
Confidence 01111246677888888877776653 7777888888888775 33 24455666666666777788
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHH
Q psy6461 410 DARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYAD 489 (703)
Q Consensus 410 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (703)
.|...|+.|+..+|.+. ..|+.+|.+|+++++++.|.-.|++|+.++|.+ ..+....+.
T Consensus 473 ~a~~~fr~Al~~~~rhY----nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-----------------svi~~~~g~ 531 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHY----NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-----------------SVILCHIGR 531 (638)
T ss_pred hHHHHHHhhhcCCchhh----HHHHhhhhheeccchhhHHHHHHHhhhcCCccc-----------------hhHHhhhhH
Confidence 88888888888877775 778888888888888888888888888888774 455555556
Q ss_pred HHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChH
Q psy6461 490 LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLAR 569 (703)
Q Consensus 490 ~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 569 (703)
++.+.|.. |+|..+|++|+..+|.+ +...+..|.++...++++
T Consensus 532 ~~~~~k~~-----------------------------------d~AL~~~~~A~~ld~kn--~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 532 IQHQLKRK-----------------------------------DKALQLYEKAIHLDPKN--PLCKYHRASILFSLGRYV 574 (638)
T ss_pred HHHHhhhh-----------------------------------hHHHHHHHHHHhcCCCC--chhHHHHHHHHHhhcchH
Confidence 66655543 77888888888888877 556777777777777888
Q ss_pred HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 570 HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 570 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
+|...+|......|+++ .++......+.+.|+.+.|...|.=|...+|.
T Consensus 575 eal~~LEeLk~~vP~es--~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQES--SVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchH--HHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 88888887777777763 34455555556666777777777666666664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=169.89 Aligned_cols=263 Identities=18% Similarity=0.219 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
...++.++...|++++|.+++++.+....
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~--------------------------------------------------- 39 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIA--------------------------------------------------- 39 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---------------------------------------------------
Confidence 34679999999999999999977665431
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
.|++...|..++.+.. ++.+.|+..|++.+.. ++ ..+..+..++.+ ...+++++|.
T Consensus 40 ---------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~-----~~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 40 ---------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DK-----ANPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------cccccccccccccccccccccccccccccccccc-cc-----cccccccccccc-cccccccccc
Confidence 1222233333333322 7888999999998875 22 245567777777 6889999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--CCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP--ARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
.+++++.+..+ ++ ..+..++.++.+.++++++..+++++.... +. ++.+|..++.+
T Consensus 98 ~~~~~~~~~~~-~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------~~~~~~~~a~~ 155 (280)
T PF13429_consen 98 KLAEKAYERDG-DP----RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-----------------SARFWLALAEI 155 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T------------------HHHHHHHHHH
T ss_pred ccccccccccc-cc----chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-----------------CHHHHHHHHHH
Confidence 99999988754 44 677888888899999999999999977544 33 48899999999
Q ss_pred HHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHH
Q psy6461 491 EESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARH 570 (703)
Q Consensus 491 ~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 570 (703)
+...|+. ++|+..|+++++.+|++ +.++..++.++...|+.++
T Consensus 156 ~~~~G~~-----------------------------------~~A~~~~~~al~~~P~~--~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 156 YEQLGDP-----------------------------------DKALRDYRKALELDPDD--PDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHCCHH-----------------------------------HHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCCH-----------------------------------HHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCCChHH
Confidence 9888775 99999999999999998 6789999999999999999
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 571 AMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 571 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
++.+++...+..|.++ .+|..+...+...|+.++|...|+++++..|+++. +...||+++...|+.++|..+++++
T Consensus 199 ~~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~--~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 199 AREALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL--WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH--HHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHCcCHH--HHHHHHHHHhccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999998888876663 46778888888899999999999999999999887 8899999999999999999999998
Q ss_pred hcc
Q psy6461 651 SQI 653 (703)
Q Consensus 651 ~~~ 653 (703)
.+.
T Consensus 275 ~~~ 277 (280)
T PF13429_consen 275 LRL 277 (280)
T ss_dssp ---
T ss_pred ccc
Confidence 764
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-14 Score=149.79 Aligned_cols=510 Identities=12% Similarity=0.058 Sum_probs=334.5
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..|=++++.+|.-..+|.-++.+++ ..+..+|+..|.+|.+.+|.+...|...+....+. .+++.|..+.-
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~--------~~we~a~~I~l 550 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE--------STWEEAFEICL 550 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc--------ccHHHHHHHHH
Confidence 5677889999999999999999999 66999999999999999999999999988876553 67888888866
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 97 RSLVFMHK--MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 97 ~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
++-+..|. ....|...|-.+.+.++...|...|+.||+.+| .+...|..+++.|.+.|++..|+++|.++..++|.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 66555553 336777888888999999999999999999999 56899999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 175 DAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 175 ~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
+...- .-+....|.|++|...++.++..-. .|.. +....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-----------~e~~---------------------------~q~gL 670 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFS-----------LERT---------------------------GQNGL 670 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----------HHHH---------------------------hhhhH
Confidence 87532 1233578999999999988763100 0000 00012
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
.+.....+..+..+|=..+|...++++++.+...-.- .+ .-..+........+.
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h-~~--~~~~~~Wi~asdac~----------------------- 724 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH-SL--QSDRLQWIVASDACY----------------------- 724 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-hh--hhhHHHHHHHhHHHH-----------------------
Confidence 3455666666666676777777777777643210000 00 000000000000000
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHH---hhhc---CC-c---hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRV---RLFD---GK-P---LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKF 401 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~---~~~~---~~-~---~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 401 (703)
.+.. ++ |+-+.....-+ ++.. +. . ..+.+.+-..+.... .+..|.++|.-
T Consensus 725 ---------~f~q--~e--~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-------~~~~WyNLGin 784 (1238)
T KOG1127|consen 725 ---------IFSQ--EE--PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-------HMYPWYNLGIN 784 (1238)
T ss_pred ---------HHHH--hc--ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-------ccchHHHHhHH
Confidence 0000 01 11111110000 0000 11 1 123333333333211 13356666655
Q ss_pred HHH--------cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 402 YEV--------NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 402 ~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
|.+ +.+...|+..+.++++.+.++. ..|+.++.+ ...|++.-|...|-+++...|.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~----~~WnaLGVl-sg~gnva~aQHCfIks~~sep~----------- 848 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNE----GLWNALGVL-SGIGNVACAQHCFIKSRFSEPT----------- 848 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH----HHHHHHHHh-hccchhhhhhhhhhhhhhcccc-----------
Confidence 443 3344688999999999988876 899999987 5678999999999999999998
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
+...|..++-+.....++ +.|...|.++..++|.+ ..
T Consensus 849 ------~~~~W~NlgvL~l~n~d~-----------------------------------E~A~~af~~~qSLdP~n--l~ 885 (1238)
T KOG1127|consen 849 ------CHCQWLNLGVLVLENQDF-----------------------------------EHAEPAFSSVQSLDPLN--LV 885 (1238)
T ss_pred ------chhheeccceeEEecccH-----------------------------------HHhhHHHHhhhhcCchh--hH
Confidence 478888887766655544 78888888888888888 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH--hhccCcc-hHHHHHHHHHHHHHHhcC----------chHHHHHHHHHHHhCCC
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERA--TGAVLPE-EMFEMFNIYIKKAAEIYG----------IPKTRQIYERAIESLPE 620 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~p~~-~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~ 620 (703)
.|+..+.+-...|+.-++..+|.-. +...... ..+..|..-...-..+|+ ...|--..++-+...|+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 7888888888888888888887653 3222211 123444433333333333 33444455566666777
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc----CCCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 621 EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC----DPRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
... .+...+......+.+..|...+.|.+.+. +.+.....-..+.+++...|+++.|...
T Consensus 966 ~~f--Ay~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 966 LCF--AYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 544 55555666667777777777777765432 2222344566677777777777766544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-14 Score=139.23 Aligned_cols=446 Identities=17% Similarity=0.204 Sum_probs=278.9
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCC-chhHHHH
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVIT-DPSYEDV 91 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~A 91 (703)
++.+..||....-+|--..+|..++..+. .+++.....+|-++|..- .+.++|..|+.+........... .-.+-+|
T Consensus 59 ~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a 137 (660)
T COG5107 59 DAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEA 137 (660)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHH
Confidence 45567788888889999999999999888 899999999999999764 45999999998865431111100 0112233
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.+.--.+.-+.|.+...|..|+.++.. +.++|..|+.|.|||+ .|..+...+|..|-.|+.+.++. .|+
T Consensus 138 yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~nleklW~dy~~fE~e~N~~-Tar 215 (660)
T COG5107 138 YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGNLEKLWKDYENFELELNKI-TAR 215 (660)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-CccccHHHHHHHHHHHHHHHHHH-HHH
Confidence 333333444679999999999998744 5689999999999999 88777899999999998776543 333
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccc--------c---ccccCCchhhhHHHHHHHHhcCcccc
Q psy6461 163 RVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKES--------F---VSKHGKSNHQLWNELCEMISQNPDKI 231 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~---~~~~~~~~~~~w~~~~~~l~~~~~~~ 231 (703)
+..-. . ..-|-.|++.++++.+.-. + ..+..+.+..-|..++++...+|-..
T Consensus 216 Kfvge-------~----------sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L 278 (660)
T COG5107 216 KFVGE-------T----------SPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKL 278 (660)
T ss_pred HHhcc-------c----------CHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCccc
Confidence 32111 1 1112233334433332100 0 01122233344555555555555433
Q ss_pred ccccHHH----HHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHH
Q psy6461 232 RSLNVDA----IIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRM 307 (703)
Q Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 307 (703)
.+..... +.+.++..++ -..++|+.+......-++-++|....++++
T Consensus 279 ~~~~~~qRi~y~~~q~~~y~~-~~~evw~dys~Y~~~isd~q~al~tv~rg~---------------------------- 329 (660)
T COG5107 279 GGRPHEQRIHYIHNQILDYFY-YAEEVWFDYSEYLIGISDKQKALKTVERGI---------------------------- 329 (660)
T ss_pred CCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhccHHHHHHHHHHhcc----------------------------
Confidence 2211111 1111111111 112334444443344444444444433333
Q ss_pred HHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCC
Q psy6461 308 EEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPK 385 (703)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~ 385 (703)
|.++.+-+.+.+.++ ++.+.+..+|+++++.+.
T Consensus 330 -------------------------------------------~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~-- 364 (660)
T COG5107 330 -------------------------------------------EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK-- 364 (660)
T ss_pred -------------------------------------------cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHH--
Confidence 333334444444433 566777888988877631
Q ss_pred ccCCchhHHHHHHHHHH--HH---cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 386 LAVGKLHTLWIEFGKFY--EV---NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 386 ~~~~~~~~~~~~~a~~~--~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
..|.... .. -|+++...+++-+-.. . +..+|+.+.....+....+.|+.+|.++.+..
T Consensus 365 ----------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k----~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~ 427 (660)
T COG5107 365 ----------RKYSMGESESASKVDNNFEYSKELLLKRIN---K----LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG 427 (660)
T ss_pred ----------HHHhhhhhhhhccccCCccccHHHHHHHHh---h----hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 2222221 11 2334333333222111 1 12678888888888889999999999988765
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~ 540 (703)
-- ++.++...+-++. +..++..-|-.+|+
T Consensus 428 ~~-----------------~h~vyi~~A~~E~----------------------------------~~~~d~~ta~~ife 456 (660)
T COG5107 428 IV-----------------GHHVYIYCAFIEY----------------------------------YATGDRATAYNIFE 456 (660)
T ss_pred CC-----------------CcceeeeHHHHHH----------------------------------HhcCCcchHHHHHH
Confidence 11 1344433332222 12355688999999
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 541 QCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 541 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
-++...|++ +..-..|-.++...++-+.|+.+|++++....+...-.+|..++.++.+-|++..+..+-++..+..|.
T Consensus 457 lGl~~f~d~--~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 457 LGLLKFPDS--TLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCCCc--hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999999998 556678888899999999999999999887766554579999999999999999999999999999996
Q ss_pred cch
Q psy6461 621 EPT 623 (703)
Q Consensus 621 ~~~ 623 (703)
...
T Consensus 535 en~ 537 (660)
T COG5107 535 ENL 537 (660)
T ss_pred HhH
Confidence 544
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=153.32 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIY 611 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (703)
+|.|...|.+|+..+|.+ ..+|..+|-++.+.++++.|.--|++|+.++|.+. .+...+..++.+.|..|+|..+|
T Consensus 471 ~d~a~~~fr~Al~~~~rh--YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRH--YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHhHHHHHHhhhcCCchh--hHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHH
Confidence 366666666666666665 34666666666666666666666666666666552 34444445555556666666666
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 612 ERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
++|+..+|.++. --+..+.++...|++++|...++...++.|.+ ..++..+..+++..|..+.|.+=+..|
T Consensus 547 ~~A~~ld~kn~l--~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e--s~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 547 EKAIHLDPKNPL--CKYHRASILFSLGRYVEALQELEELKELVPQE--SSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHhcCCCCch--hHHHHHHHHHhhcchHHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 666666666554 33444555556666666666666655554433 555556666666666655555444333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-14 Score=149.09 Aligned_cols=294 Identities=10% Similarity=0.004 Sum_probs=223.7
Q ss_pred HhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 361 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
+.+..|++..|.+...++.+.. | .....++..|......|+++.|...|+++.+..|.+. ..+...++.++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~-~-----~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a~l~ 163 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA-A-----EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIARTRIL 163 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC-C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHHHHH
Confidence 3344599999999999887752 3 2334566678888899999999999999998877763 13566679999
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcC-CCCchH--
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALF-KWPYIF-- 513 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~-~~~~~~-- 513 (703)
++.|+++.|+..+++.++..|++ +.++..++.++...|++ ..+++..+.. .++...
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~-----------------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRH-----------------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999985 78899999999999998 3333333331 222222
Q ss_pred ---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 514 ---DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP----RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 514 ---~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
..|..++.. +..++..+.+.++.+..|. + +.++..++..+...|++++|.++++++++..|++.
T Consensus 227 l~~~a~~~~l~~-------~~~~~~~~~L~~~~~~~p~~~~~~--~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 227 LEQKAEIGLLDE-------AMADEGIDGLLNWWKNQPRHRRHN--IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHHHHH-------HHHhcCHHHHHHHHHHCCHHHhCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 334333321 1124455688888888884 4 67999999999999999999999999999999875
Q ss_pred HHH--HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH--HhcccCCCCChHh
Q psy6461 587 MFE--MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH--CSQICDPRVTAGF 662 (703)
Q Consensus 587 ~~~--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~--a~~~~~~~~~~~~ 662 (703)
... .+..++.. ..++.+.++..++++++..|+++...+...+++++.+.|++++|+..|++ +++. .|+ ...
T Consensus 298 ~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~--~~~ 372 (409)
T TIGR00540 298 AISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLD--AND 372 (409)
T ss_pred cchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCC--HHH
Confidence 322 33333332 24677889999999999999998222888999999999999999999995 5555 454 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q psy6461 663 WAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 663 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 694 (703)
+.+++.+..+.|+.++|.++++++..+..+.+
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 67999999999999999999988877554443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-13 Score=133.36 Aligned_cols=473 Identities=14% Similarity=0.107 Sum_probs=288.0
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKE--LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
+.+....+.+-.. +.++.-|.-+-+|.... +|.|. .|+.=.-+. .++++.|.-+..+- +..-.+.
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~-~~~aq~l~~----------~~~y~ra~~lit~~-~le~~d~ 82 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI-YWLAQVLYL----------GRQYERAAHLITTY-KLEKRDI 82 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH-HHHHHHHHh----------hhHHHHHHHHHHHh-hhhhhhH
Confidence 4444455555444 66777777777776543 34332 333222111 14455444333322 3344566
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHH------HHhCCcc-----------------cccccHHHHHHHHHhcCChHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRA------LRALPIT-----------------QHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~a------l~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
.....++.++....+.++|..+..++ +...|.+ ....+...-+.++....+.++|+.
T Consensus 83 ~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 83 ACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHH
Confidence 66677777777777777777777633 1111211 011222333556666677789999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHh-cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHH--h-cCccccccccHHHH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSS-IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMI--S-QNPDKIRSLNVDAI 239 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l--~-~~~~~~~~~~~~~~ 239 (703)
.|+.++..++...+++..+... .-...+-..++... + +. .......+.-..+-++. + .+.........+.+
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l---~-~a-~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESL---D-LA-MLTKEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcc---c-HH-hhhhhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 9999999998887755433210 00000111111100 0 00 00000000000000000 0 00000000000000
Q ss_pred HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCc
Q psy6461 240 IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEE 319 (703)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (703)
.. . ....++....++-+...+++.++.++.+..+..+|.......+..+ ..++.+-
T Consensus 238 ~~-----l-~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~----------------- 293 (611)
T KOG1173|consen 238 IG-----L-AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGK----------------- 293 (611)
T ss_pred hh-----h-hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcc-----------------
Confidence 00 0 1235677788889999999999999999999998865544333332 1112111
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHH
Q psy6461 320 DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIE 397 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (703)
.+.-+ ++.--+++..|+.+..|+..+-.+. |+..+|+..|.++... +| .....|+.
T Consensus 294 ~n~Lf----------------~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-D~-----~fgpaWl~ 351 (611)
T KOG1173|consen 294 SNKLF----------------LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-DP-----TFGPAWLA 351 (611)
T ss_pred cchHH----------------HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc-Cc-----cccHHHHH
Confidence 00000 1111247889999999998876443 9999999999998775 33 45678999
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARV 477 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 477 (703)
+|..+...|+.+.|...|..|-+..|.+- ...+-+|.-+.+.++.+-|.+.|.+|..++|.+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl~~G~h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-------------- 413 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARLMPGCH----LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-------------- 413 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHhccCCc----chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--------------
Confidence 99999999999999999999999988764 444445555677999999999999999999986
Q ss_pred HhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc-----hH
Q psy6461 478 YKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY-----AK 552 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~ 552 (703)
+-+....+-+.... +.+.+|...|+.++...+... -.
T Consensus 414 ---plv~~Elgvvay~~-----------------------------------~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 414 ---PLVLHELGVVAYTY-----------------------------------EEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ---chhhhhhhheeehH-----------------------------------hhhHHHHHHHHHHHHHhhhccccccchh
Confidence 55555544333222 234888888888885433221 02
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
.++.++|+.+.+.+.+++|+..|++++...|++.....-.+|+.. ..|+++.|.+.|.++|.+.|++..
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~--llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH--LLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH--HhcChHHHHHHHHHHHhcCCccHH
Confidence 478999999999999999999999999999998655444455544 478999999999999999998854
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-14 Score=147.80 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+.++..++..+...|++++|..+++++++..|++.......+..++ .+..++.+.+++.++++++..|++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l~~~~~~~~~~~~e~~lk~~p~~------- 332 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RLKPEDNEKLEKLIEKQAKNVDDK------- 332 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hcCCCChHHHHHHHHHHHHhCCCC-------
Confidence 56788888888888999999999999999888877511000222222 223466777888888888888774
Q ss_pred hhHHHHHHhhH--HHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhC
Q psy6461 471 ETVQARVYKSI--KLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE--QCLEAC 546 (703)
Q Consensus 471 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~--~al~~~ 546 (703)
+ .+...++.++.+.|++ ++|++.|+ ++++..
T Consensus 333 ----------~~~~ll~sLg~l~~~~~~~-----------------------------------~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 333 ----------PKCCINRALGQLLMKHGEF-----------------------------------IEAADAFKNVAACKEQ 367 (409)
T ss_pred ----------hhHHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHhHHhhcC
Confidence 5 6666777777666554 77888888 566677
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 547 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
|++ ..+..++.++.+.|+.++|..+|++++..
T Consensus 368 p~~---~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 368 LDA---NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 765 34567788888888888888888877543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-12 Score=126.98 Aligned_cols=480 Identities=14% Similarity=0.105 Sum_probs=294.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
.+++.......+..++..|+++...-+.|..+...|+.++|-.....+++.+| .++.-|..++-++....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999998 4588899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHH---HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHH
Q psy6461 165 FRRYLKLFPEDAEDYIEYL---SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIR 241 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 241 (703)
|+.|+...|+|.+.|-.+. +..++++.....-... ++.+|.
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L------------------------Lql~~~------------ 141 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQL------------------------LQLRPS------------ 141 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH------------------------HHhhhh------------
Confidence 9999999999998775432 4455555433222221 112221
Q ss_pred hHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc---CCcccHHHHHHHHHH-HHHHHHHHHHHHhhhCCCCC
Q psy6461 242 GGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV---TTVRDFTQVFDAYAQ-FEELSLNKRMEEIAENDTPS 317 (703)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~ 317 (703)
....|..++..+.-.|++..|..+.+...+.. |...++. .... +.+...
T Consensus 142 ---------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e----~se~~Ly~n~i-------------- 194 (700)
T KOG1156|consen 142 ---------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE----HSELLLYQNQI-------------- 194 (700)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH----HHHHHHHHHHH--------------
Confidence 23579999999999999999999888776654 2222110 0000 000000
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHH
Q psy6461 318 EEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIE 397 (703)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (703)
..+ .|..+.|.+-...- .+... +...+-..
T Consensus 195 ----------------------------~~E----------------~g~~q~ale~L~~~----e~~i~--Dkla~~e~ 224 (700)
T KOG1156|consen 195 ----------------------------LIE----------------AGSLQKALEHLLDN----EKQIV--DKLAFEET 224 (700)
T ss_pred ----------------------------HHH----------------cccHHHHHHHHHhh----hhHHH--HHHHHhhh
Confidence 000 02222222221110 00000 01112234
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAAL-RLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
-+.++...+++++|..+|...+..+|++. .-+..+-..+..-.+.-++. .+|...-+..|...-..+-...+-.+
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~----~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNL----DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhH----HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc
Confidence 46777788888999999999888888886 44444444443322333333 56666555444421000000000000
Q ss_pred HHhhHHHHHHHHHHHHhcCCh----------------hHHHhHhhcC----------C-------CCchHHHHHHHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTF----------------KAYEKGIALF----------K-------WPYIFDIWNTYLTKF 523 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~----------------~~~e~al~~~----------~-------~~~~~~~~~~y~~~~ 523 (703)
..-......|..-..+.|-. .+.++.+..+ . .++...+|..|.. .
T Consensus 301 -eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l-a 378 (700)
T KOG1156|consen 301 -EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL-A 378 (700)
T ss_pred -chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH-H
Confidence 00011112222222222111 2334443311 1 2567778988873 2
Q ss_pred HHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 524 LSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 524 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
......|.++.|...++.|+...|+- ++.|+.-|++....|++++|...++.+.+.+-.| .-+-..++.+..+...
T Consensus 379 qh~D~~g~~~~A~~yId~AIdHTPTl--iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD--R~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDHTPTL--IELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD--RAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhccCchH--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh--HHHHHHHHHHHHHccc
Confidence 22224678999999999999999998 7899999999999999999999999999987665 3344456666677778
Q ss_pred chHHHHHHHHHHHhCCCcch-----HH-HHHHH--HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 604 IPKTRQIYERAIESLPEEPT-----RQ-MCLKF--AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~-----~~-~~~~~--a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
.++|.++..+--...- +.. .+ +|... |..+.++|++-.|.+-+-..-++.. + -..-=-.+-.++...|+
T Consensus 455 i~eA~~~~skFTr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~-~-~~~dqfDfhtyc~rk~t 531 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK-T-WSEDQFDFHTYCMRKGT 531 (700)
T ss_pred cHHHHHHHHHhhhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH-H-HhhhhhhHHHHHHhcCc
Confidence 8888877654433221 110 00 45433 4455667777666554433222210 0 00011135577888899
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6461 676 EDTMREMLRIKRSVQAQ 692 (703)
Q Consensus 676 ~~~~~~~~~~~~~~~~~ 692 (703)
+..+.++++-.-.|..+
T Consensus 532 lrsYv~ll~~~d~L~~~ 548 (700)
T KOG1156|consen 532 LRSYVELLEWEDNLRSS 548 (700)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999998766665533
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-13 Score=137.52 Aligned_cols=462 Identities=12% Similarity=0.042 Sum_probs=267.9
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 83 ITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
...|+++.|...|-.|+.++|.|.-++.+-...+.+.|++++|.+--.+..+..| ..+..|...+--....|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p--~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP--DWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC--chhhHHHHhHHHHHhcccHHHHH
Confidence 3469999999999999999999999999999999999999999999999999999 57888888888888899999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhccccccc-------ccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 163 RVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS-------KHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
..|.++|+.+|++...+.++.... ..+.+. ......+.|.. .........+......+..+|..+..--
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~---~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA---DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh-hHHHHh---hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999999999987665544222 111010 11111111100 0011112223333444444444332100
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV--TTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 313 (703)
.+ +.+...++.+.. .+.. ..+....... +..+. ....
T Consensus 167 ~d--------------~r~m~a~~~l~~-~~~~----~~~~~~~~~~~~~~~p~----------------------~~~~ 205 (539)
T KOG0548|consen 167 ND--------------PRLMKADGQLKG-VDEL----LFYASGIEILASMAEPC----------------------KQEH 205 (539)
T ss_pred cc--------------HHHHHHHHHHhc-Cccc----cccccccccCCCCCCcc----------------------cccC
Confidence 00 011111111110 0000 0010101000 00000 0000
Q ss_pred CCCCCc-chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchh
Q psy6461 314 DTPSEE-DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLH 392 (703)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 392 (703)
.+.... ...+..+ ...... + ..-+..+..-..++..+++.|..++... . ..
T Consensus 206 ~~~~~~~d~~ee~~---~k~~a~---------------~---ek~lgnaaykkk~f~~a~q~y~~a~el~-~------~i 257 (539)
T KOG0548|consen 206 NGFPIIEDNTEERR---VKEKAH---------------K---EKELGNAAYKKKDFETAIQHYAKALELA-T------DI 257 (539)
T ss_pred CCCCccchhHHHHH---HHHhhh---------------H---HHHHHHHHHHhhhHHHHHHHHHHHHhHh-h------hh
Confidence 000000 0000000 000000 0 0000000011156677888888888763 2 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHH---HHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC---EWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+.+.+..|...|.+.+++...+++++........+..+-. .++..+...++++.|+..|.+++.....
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------- 330 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------- 330 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-------
Confidence 567888899999999999999999888875433322212222 2333556678899999999998876543
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
+++....-..+...+.. ++. .+-.|. .-..-=.....-+..+++..|...|.++++.+|++
T Consensus 331 -----------~~~ls~lk~~Ek~~k~~---e~~--a~~~pe---~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D 391 (539)
T KOG0548|consen 331 -----------PDLLSKLKEAEKALKEA---ERK--AYINPE---KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED 391 (539)
T ss_pred -----------HHHHHHHHHHHHHHHHH---HHH--HhhChh---HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch
Confidence 23333332222222111 000 000000 00000000112224678999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
..+|.+-|-++.+.|.+..|++-.+.+++.+|+.....+..+-+... .+++++|.+.|+.+++.+|++.. +.-.
T Consensus 392 --a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~--mk~ydkAleay~eale~dp~~~e--~~~~ 465 (539)
T KOG0548|consen 392 --ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA--MKEYDKALEAYQEALELDPSNAE--AIDG 465 (539)
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCchhHH--HHHH
Confidence 67999999999999999999999999999999876555555444444 45999999999999999998765 5555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHh
Q psy6461 630 FAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
|.++...+........++++++
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHhhc
Confidence 5555544332333445555543
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-14 Score=141.43 Aligned_cols=278 Identities=12% Similarity=0.085 Sum_probs=199.6
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
+.+.....++..- .+++.+-.++++..++.+|-+.+.....+..+.+. |+..+-.-+-.+.+...|+++-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el--------~~~n~Lf~lsh~LV~~yP~~a~s 314 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL--------GKSNKLFLLSHKLVDLYPSKALS 314 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh--------cccchHHHHHHHHHHhCCCCCcc
Confidence 4455555555555 78899999999999999998887776666555442 55555666667788888999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCC
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 188 (703)
|+..|..+...|++++||+.|.++...+| .....|..++..+.-.|+.++|...|..|-+..|+...
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl----------- 381 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL----------- 381 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-----------
Confidence 99999999999999999999999999888 56888999999888888889999999888888777631
Q ss_pred HHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCch
Q psy6461 189 LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLF 268 (703)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (703)
...-+|.-|.+.+.+
T Consensus 382 -----------------------------------------------------------------P~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 382 -----------------------------------------------------------------PSLYLGMEYMRTNNL 396 (611)
T ss_pred -----------------------------------------------------------------hHHHHHHHHHHhccH
Confidence 233344445555666
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy6461 269 ERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLR 348 (703)
Q Consensus 269 ~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (703)
+.|...|.+++...|.++- ..-..+...|
T Consensus 397 kLAe~Ff~~A~ai~P~Dpl-v~~Elgvvay-------------------------------------------------- 425 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPL-VLHELGVVAY-------------------------------------------------- 425 (611)
T ss_pred HHHHHHHHHHHhcCCCcch-hhhhhhheee--------------------------------------------------
Confidence 6666666666665554320 0000000000
Q ss_pred cCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCcc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc
Q psy6461 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLA-VGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
-.+.+.+|...|+.++...+.... ......+|.++|..+.+.+.+++|+..|+++|...|.++
T Consensus 426 ---------------~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~- 489 (611)
T KOG1173|consen 426 ---------------TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA- 489 (611)
T ss_pred ---------------hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch-
Confidence 002334444444444422111110 012345789999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 428 DLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..+...|-++...|+++.|.+.|.+++.+.|++
T Consensus 490 ---~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 490 ---STHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ---hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 889999999999999999999999999999986
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-13 Score=138.00 Aligned_cols=207 Identities=11% Similarity=0.057 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc--C
Q psy6461 27 NPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM--H 103 (703)
Q Consensus 27 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p 103 (703)
.-++...|-.+.-... -|+++.+.+.||+++.-.-...+.|..++-..... |.-..|..+.+..+... |
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa--------g~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA--------GSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh--------ccchHHHHHHHhhcccccCC
Confidence 3456677776665555 79999999999999988888889998887665432 56677999999999887 8
Q ss_pred CCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCc---ccccccHHHHHHHHHh----cCC-------hHHHHHHHHHH
Q psy6461 104 KMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPI---TQHHRVWPLYLSFVKS----HAV-------PETAVRVFRRY 168 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~----~~~-------~~~A~~~~~~~ 168 (703)
.++........++.. .+.++++...-.+++..... .-.+..+...+-.|.. ... ..++++.++++
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 888888877777655 57888888888888873211 0112223333222211 111 15688999999
Q ss_pred HhhCCCCHHHHH--HH-HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhh
Q psy6461 169 LKLFPEDAEDYI--EY-LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245 (703)
Q Consensus 169 l~~~p~~~~~~~--~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (703)
++.+|.++.+.. .+ +...++.+.|.....+++..
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l------------------------------------------- 507 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL------------------------------------------- 507 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------------------------------------------
Confidence 999999987433 32 35677788887777766531
Q ss_pred hhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCc
Q psy6461 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 285 (703)
.++.....|..++.+....+++..|..+.+.++...+++
T Consensus 508 -~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 508 -NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred -cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 112335789999999999999999999999999887753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-13 Score=141.47 Aligned_cols=223 Identities=10% Similarity=0.045 Sum_probs=146.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH----HHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA----TVWCEWAELEL 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~ 441 (703)
|+++.|...+++..+.. | +++.+...++..|...|++++|..++.++.+..+.++.+.. ..|..+.....
T Consensus 167 g~~~~Al~~l~~~~~~~-P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred CCHHHHHHHHHHHHhcC-C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444431 2 23445566666777777777888777777766554442222 12222222222
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 442 RAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 442 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
...+.+...+++++.....|+ ++.++..++..+...|+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~-----------------~~~~~~~~A~~l~~~g~~------------------------ 279 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRH-----------------QVALQVAMAEHLIECDDH------------------------ 279 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhC-----------------CHHHHHHHHHHHHHCCCH------------------------
Confidence 333344444444443333343 366777777777666654
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
++|...++++++..| + +.+...++.+ ..|+++++.+..++.++..|++ ..+...+...+.+.
T Consensus 280 -----------~~A~~~L~~~l~~~~-~--~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~--~~l~l~lgrl~~~~ 341 (398)
T PRK10747 280 -----------DTAQQIILDGLKRQY-D--ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT--PLLWSTLGQLLMKH 341 (398)
T ss_pred -----------HHHHHHHHHHHhcCC-C--HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHC
Confidence 888888888888544 3 3556666655 3488888888888888888887 45666777777788
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
+++++|+..|+++++..|++. .+..++.++.+.|+.++|..+|++++...++
T Consensus 342 ~~~~~A~~~le~al~~~P~~~---~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAY---DYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 888889999999988888753 4678889999999999999999999887543
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=156.82 Aligned_cols=248 Identities=19% Similarity=0.280 Sum_probs=211.0
Q ss_pred hhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 346 LLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 346 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
.+.-+|+....|+.|+.+. .++.+.|+++.++|+.++.+... .....+|+.|..++..-|.-+...++|+||.+.+.
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD 1528 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc
Confidence 3788999999999999754 38899999999999998755432 23467999999999999999999999999998742
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhH
Q psy6461 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKG 503 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 503 (703)
. ..++..+..+|...+++++|.++|+..++.+.. ...+|..|++++.++.+-
T Consensus 1529 ~-----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-----------------~~~vW~~y~~fLl~~ne~------ 1580 (1710)
T KOG1070|consen 1529 A-----YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-----------------TRKVWIMYADFLLRQNEA------ 1580 (1710)
T ss_pred h-----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-----------------hhhHHHHHHHHHhcccHH------
Confidence 2 278999999999999999999999999998874 378999999988876543
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q psy6461 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 504 l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 583 (703)
+.|+.++.+|++..|..--..+...+|+++.+.|+.++++.+|+-.+...|
T Consensus 1581 -----------------------------~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1581 -----------------------------EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred -----------------------------HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 889999999999999832267999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 584 PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL-PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+- ..+|..|++++++.++...+|.+|+|++++. +-....+++-.|..+|.+.|+-+.+..+=.||.+-
T Consensus 1632 KR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1632 KR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred cc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 86 6799999999999999999999999999873 21223458888999999999987777776777654
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-12 Score=121.56 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=135.4
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+...++......++.. | -...++...+.+|...|+...|+.-++.+-++...+. +..+..+.+++.-|+
T Consensus 169 GD~~~ai~~i~~llEi~-~-----Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT----e~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-P-----WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT----EGHYKISQLLYTVGD 238 (504)
T ss_pred CchhhHHHHHHHHHhcC-c-----chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch----HHHHHHHHHHHhhhh
Confidence 66666677766666652 2 1345677778888888888888888888877766666 777888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
.+.++...+.+++.+|+. ..-+-.|-.+-.-.+.+.- ...
T Consensus 239 ~~~sL~~iRECLKldpdH-----------------K~Cf~~YKklkKv~K~les-----------------------~e~ 278 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDH-----------------KLCFPFYKKLKKVVKSLES-----------------------AEQ 278 (504)
T ss_pred HHHHHHHHHHHHccCcch-----------------hhHHHHHHHHHHHHHHHHH-----------------------HHH
Confidence 888888888888888874 1111122111111000000 011
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYA--KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
....+++-++.+..++.++.+|.-.. ....-.+..++..-|++.+|+....+++...|++ +.++.--...++....
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d--v~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD--VQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhhHH
Confidence 11234567778888888888887421 1234445566667788888888888888888877 4445544455555567
Q ss_pred chHHHHHHHHHHHhCCCcchH
Q psy6461 604 IPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~ 624 (703)
+|.|..-|++|.+.+|++..+
T Consensus 357 YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHH
Confidence 888888888888888877653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-13 Score=138.46 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
+.+.++..++..+...|+.++|..+++++++..| ++ .+...++.+ ..++++++++.+++.++..|++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~----~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~------ 327 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DE----RLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT------ 327 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CH----HHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC------
Confidence 3567788888888888888888888888888543 43 455555543 3478888888888888888874
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
+.++..++.+....+++ ++|++.|+++++..|++
T Consensus 328 -----------~~l~l~lgrl~~~~~~~-----------------------------------~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 328 -----------PLLWSTLGQLLMKHGEW-----------------------------------QEASLAFRAALKQRPDA 361 (398)
T ss_pred -----------HHHHHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHhcCCCH
Confidence 77788888887777665 88888888888888875
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
..+..++.++.+.|+.++|..+|++++...
T Consensus 362 ---~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 ---YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356778888888888888888888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=138.27 Aligned_cols=223 Identities=15% Similarity=0.026 Sum_probs=171.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
+..+.++..+.+++...+. .++.....|+..|.++...|+.++|+..|+++++.+|+++ ..|+.+|.++...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDL--TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCC
Confidence 3456788888888865321 1234578899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|...|+++++.+|++ ...|...+.++...|++
T Consensus 114 ~~~A~~~~~~Al~l~P~~-----------------~~a~~~lg~~l~~~g~~---------------------------- 148 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTY-----------------NYAYLNRGIALYYGGRY---------------------------- 148 (296)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHCCCH----------------------------
Confidence 999999999999999985 67788887777766654
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|.+.|+++++.+|++.. ...+..+....+++++|...|++++...+.+. +.| .......|+.+
T Consensus 149 -------~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~---~~~~~~lg~~~ 213 (296)
T PRK11189 149 -------ELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW---NIVEFYLGKIS 213 (296)
T ss_pred -------HHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH---HHHHHHccCCC
Confidence 9999999999999999831 22333334567899999999988776544331 122 22223355665
Q ss_pred HHHHHHHHHHH-------hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 606 KTRQIYERAIE-------SLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 606 ~A~~~~~~al~-------~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
.+ ..++.+.+ ..|.. .+.|..++.++.+.|++++|+..|++|++..+++
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~--~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERL--CETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 54 35555553 33332 3489999999999999999999999999996555
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=123.61 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
+.|.+.|++|+++.|++ ..+..+||.|+...|.+++|...|++|+..-.-......|........+.|+.+.|+..|+
T Consensus 86 ~~A~e~YrkAlsl~p~~--GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 86 DLADESYRKALSLAPNN--GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred hhHHHHHHHHHhcCCCc--cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 44444455555544444 2344444444444444555555554444331100011123333333333444555555555
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 613 RAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 613 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
++|+.+|+.+. .....++.+.+.|++-.|+..+++-.+-
T Consensus 164 raL~~dp~~~~--~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 164 RALELDPQFPP--ALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHhCcCCCh--HHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 55555554443 3444444555555555555555544433
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.5e-13 Score=123.90 Aligned_cols=325 Identities=14% Similarity=0.139 Sum_probs=244.5
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.+|.+++-.++++.-.. .+.+..|...|..|++.+|++.......+..++.. |....|...+.++|..-|+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAm--------Gksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAM--------GKSKAALQDLSRVLELKPD 104 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh--------cCCccchhhHHHHHhcCcc
Confidence 47889999999998777 99999999999999999999999888888777654 6667799999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc-----------cccHHHHHHH--HHhcCChHHHHHHHHHHHhh
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-----------HRVWPLYLSF--VKSHAVPETAVRVFRRYLKL 171 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~~~--~~~~~~~~~A~~~~~~~l~~ 171 (703)
-..+.+..+.+++++|.+++|..-|+..|+..|.+.. ..-|...-.+ ....|+...|+......|+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 9999999999999999999999999999999995311 1112222221 22457788899999999999
Q ss_pred CCCCHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc
Q psy6461 172 FPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT 248 (703)
Q Consensus 172 ~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (703)
.|-+.+.+ ..-++..|....|+.-+..+.+ +.
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask---------------------------------------------Ls 219 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASK---------------------------------------------LS 219 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh---------------------------------------------cc
Confidence 99887754 3556778888888877766531 11
Q ss_pred cchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHH
Q psy6461 249 DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRL 328 (703)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (703)
.++.+..+.++.++...|+.+.+....+.+++..|+-. ..|..|..+.+-. +.+
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK---~Cf~~YKklkKv~-----------------------K~l 273 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK---LCFPFYKKLKKVV-----------------------KSL 273 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh---hHHHHHHHHHHHH-----------------------HHH
Confidence 13346788889999999999999999999999888643 4444444332211 111
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 329 ARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
...+..+ ..+.+.++++..+..++.. |... +-....+-.++.++..-+++
T Consensus 274 es~e~~i----------------------------e~~~~t~cle~ge~vlk~e-p~~~-~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 274 ESAEQAI----------------------------EEKHWTECLEAGEKVLKNE-PEET-MIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHH----------------------------hhhhHHHHHHHHHHHHhcC-Cccc-ceeeeeeheeeecccccCCH
Confidence 1111111 1156667777777777763 3211 11233455567777788899
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+|++...++|..+|+++ .+++.-+..++-...++.|+.-|++|.+.++++
T Consensus 324 ~eAiqqC~evL~~d~~dv----~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDV----QVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999887 889999999988889999999999999998875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=150.27 Aligned_cols=262 Identities=10% Similarity=-0.014 Sum_probs=190.8
Q ss_pred cCCCcHHHHHHHHh----hhc---CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH---------cCChHHHH
Q psy6461 349 QNPHNVLEWHKRVR----LFD---GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV---------NDQLEDAR 412 (703)
Q Consensus 349 ~~p~~~~~~~~~~~----~~~---~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~A~ 412 (703)
.+|.+.++|..+.. +.. ++.++|+..|++++.. +| ++..+|..+|.++.. .+++++|.
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l-dP-----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~ 324 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM-SP-----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAK 324 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc-CC-----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHH
Confidence 34555665544433 111 3467899999999987 44 356677777776552 24589999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
..++++++.+|+++ ..|..++.++...|++++|...|+++++.+|++ ...|..++.++.
T Consensus 325 ~~~~~Al~ldP~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----------------~~a~~~lg~~l~ 383 (553)
T PRK12370 325 EHAIKATELDHNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----------------ADIKYYYGWNLF 383 (553)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHH
Confidence 99999999999997 889999999999999999999999999999985 788888888887
Q ss_pred hcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHH
Q psy6461 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 493 ~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
..|+. ++|...++++++.+|.+ +..+...+..+...|++++|+
T Consensus 384 ~~G~~-----------------------------------~eAi~~~~~Al~l~P~~--~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 384 MAGQL-----------------------------------EEALQTINECLKLDPTR--AAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HCCCH-----------------------------------HHHHHHHHHHHhcCCCC--hhhHHHHHHHHHhccCHHHHH
Confidence 77665 89999999999999987 334444555566688999999
Q ss_pred HHHHHHhhcc-CcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 573 AVYERATGAV-LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 573 ~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
..+++++... |.+ ...+......+...|++++|+..+.+.+...|++.. .+...+..+...| ++|...+++.+
T Consensus 427 ~~~~~~l~~~~p~~--~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 427 RLGDELRSQHLQDN--PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI--AVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHhccccC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH--HHHHHHHHHhccH--HHHHHHHHHHH
Confidence 9999988775 444 233444455556688999999999988887777544 5666666666677 47777777765
Q ss_pred cccCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
+..... ..-......++.-+|+.+.+..+
T Consensus 501 ~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 501 ESEQRI--DNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHhhHh--hcCchHHHHHHHHHhhhHHHHHH
Confidence 542211 11122267777788887777665
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-12 Score=126.33 Aligned_cols=438 Identities=16% Similarity=0.149 Sum_probs=246.5
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC----
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLK--ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK---- 104 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 104 (703)
.....++.-+. +....+|...|+-.++ .||++.-+-....+.+. ...++.+|++.|.-|+...|.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~--------kkr~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHF--------KKREFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceee--------ehhhHHHHHHHHHHHHhhccccchh
Confidence 44445555555 6777888888888775 67777665544444332 235688899999999988874
Q ss_pred -CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCH-----
Q psy6461 105 -MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDA----- 176 (703)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~----- 176 (703)
...+..+.+-.+.+.|+++.|...|+-++...|. ....+.. .-++..-|+.++..+.|.+.+.+. |++.
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn--~~a~~nl-~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN--FIAALNL-IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc--HHhhhhh-hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 2244455566667778999999999999988883 2222222 223335677788888888887641 1111
Q ss_pred ----H-HHH------HHHHh--cCCHHHHHHHH---HHhhc---ccccc--------cccCCchhhhHHH-----HHHHH
Q psy6461 177 ----E-DYI------EYLSS--IERLDEAAVKL---AYIVN---KESFV--------SKHGKSNHQLWNE-----LCEMI 224 (703)
Q Consensus 177 ----~-~~~------~~~~~--~~~~~~A~~~~---~~~~~---~~~~~--------~~~~~~~~~~w~~-----~~~~l 224 (703)
. .++ ..+.+ ..+-..|.+.. .+++. .+.|- .......+.+-.. ..+++
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 0 111 11111 11111222222 12221 11110 0000000110000 11122
Q ss_pred hcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC--chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Q psy6461 225 SQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG--LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELS 302 (703)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~ 302 (703)
+ +.+- ..+-++++..-..-......+-.+|+.++.-+| ++..|...-+.++..
T Consensus 431 k-~~d~---~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------------------- 485 (840)
T KOG2003|consen 431 K-NGDI---EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------------------- 485 (840)
T ss_pred h-ccCH---HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc---------------------
Confidence 1 1110 001111111111100011122333333333322 344444444443332
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHH
Q psy6461 303 LNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVK 380 (703)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~ 380 (703)
+-.++.+...... +..|++++|.+.|++++.
T Consensus 486 -----------------------------------------------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 486 -----------------------------------------------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred -----------------------------------------------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 1112222222221 223899999999999987
Q ss_pred hcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 381 TVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
.-. .-.++.++.+-.+...|++++|...|-+.-.+-.++. ++..+++.+|....++.+|++++-++....
T Consensus 519 nda------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~----evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 519 NDA------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA----EVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred Cch------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 521 2356788889999999999999999988766656666 889999999999999999999999999999
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERAR 536 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~ 536 (703)
|++ +.+...+++++.+.|+. +-+-..-+.||.....--|..-.+ +... -.+++.
T Consensus 589 p~d-----------------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy-idtq----f~ekai 646 (840)
T KOG2003|consen 589 PND-----------------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY-IDTQ----FSEKAI 646 (840)
T ss_pred CCC-----------------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH-HhhH----HHHHHH
Confidence 996 89999999999998876 111112223333332223332111 1111 136777
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 537 DLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 537 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
.+|+++.-+.|+. ....+..+.++.+.|++.+|..+|+.....+|.+.
T Consensus 647 ~y~ekaaliqp~~--~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 647 NYFEKAALIQPNQ--SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHhcCccH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 7777777777765 33455666667777777777777777777777663
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-10 Score=114.72 Aligned_cols=496 Identities=16% Similarity=0.201 Sum_probs=278.6
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----------cccCCCCch--hHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 46 KAIINTIYERSLKELPGSYKLWYNYLKLRRKQ----------VKGKVITDP--SYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~----------~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
+-+-+.-||--|+.-.-+..=.+.|++++... .+.+.+-++ -......+|++|+...+.++.+|..|+
T Consensus 33 Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi 112 (568)
T KOG2396|consen 33 IVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYI 112 (568)
T ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 33445566666665555555566676655411 111111111 133466789999999999999999999
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHH
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV-PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEA 192 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A 192 (703)
.+..+.+.+.+..++|..+|+.+| +++.+|...+.++.+.+. .+.|+++|.++|+.+|+++..|..++...=.+-+-
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp--~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~K 190 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHP--NNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEK 190 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCC--CCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 569999999998887655 79999999999999999998877665211000000
Q ss_pred HHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHH
Q psy6461 193 AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272 (703)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 272 (703)
...-.+.+.. ... +.+ ....+|. .+-
T Consensus 191 l~~rr~~~g~------------------------~~~-----~~~-----------------------~eie~ge--~~~ 216 (568)
T KOG2396|consen 191 LRNRREELGL------------------------DSS-----DKD-----------------------EEIERGE--LAW 216 (568)
T ss_pred HHHHHHHhcc------------------------ccc-----hhH-----------------------HHHHHHH--HHH
Confidence 0000111100 000 000 0000000 000
Q ss_pred HHHHHHHhhcC-Ccc----cHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy6461 273 DIYEEAIQTVT-TVR----DFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLL 347 (703)
Q Consensus 273 ~~~~~~l~~~~-~~~----~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 347 (703)
..+...+.... ... +-........++ ....++. ..
T Consensus 217 ~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel----------------------------~k~i~d~------------~~ 256 (568)
T KOG2396|consen 217 INYANSVDIIKGAVKSVELSVAEKFDFLKEL----------------------------QKNIIDD------------LQ 256 (568)
T ss_pred HhhccchhhhhcchhhcchHHHHHHHHHHHH----------------------------HHHHHHH------------Hh
Confidence 11110000000 000 000000000000 1111111 24
Q ss_pred hcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc
Q psy6461 348 RQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
...|.++..|...++ ..++-...+ +... ...........-+-+....+|+.+++.-|+.
T Consensus 257 ~~~~~np~~~~~laq----------r~l~i~~~t-dl~~--------~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~-- 315 (568)
T KOG2396|consen 257 SKAPDNPLLWDDLAQ----------RELEILSQT-DLQH--------TDNQAKAVEVGSKESRCCAVYEEAVKTLPTE-- 315 (568)
T ss_pred ccCCCCCccHHHHHH----------HHHHHHHHh-hccc--------hhhhhhchhcchhHHHHHHHHHHHHHHhhHH--
Confidence 457888888865543 122211111 0000 0111122222234456678999999876654
Q ss_pred hHHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHH
Q psy6461 428 DLATVWCEWAELELRA------GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYE 501 (703)
Q Consensus 428 ~~~~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 501 (703)
..|..|+.+.+.. .....-..+++++.....-.- -.+..+.....++.....- .+
T Consensus 316 ---sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~--------------~~~~~ys~~~l~~~t~~~~--r~ 376 (568)
T KOG2396|consen 316 ---SMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSE--------------CLYKQYSVLLLCLNTLNEA--RE 376 (568)
T ss_pred ---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc--------------chHHHHHHHHHHHhccchH--hH
Confidence 6777777665432 245556667777664332100 0133333333333333221 11
Q ss_pred hHhh----cCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhCCCcchHHHHHHHHHHHHHcCC-hHHH-HH
Q psy6461 502 KGIA----LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE--QCLEACPPRYAKTLYLLYAKLEEEHGL-ARHA-MA 573 (703)
Q Consensus 502 ~al~----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~a~~~~~~g~-~~~A-~~ 573 (703)
-+.. .| ..+...|..+++.+..... |-..-.++ ..++..+.+ +.+..|...- .|+ .... ..
T Consensus 377 ~a~~l~~e~f--~~s~k~~~~kl~~~~~s~s----D~q~~f~~l~n~~r~~~~s---~~~~~w~s~~--~~dsl~~~~~~ 445 (568)
T KOG2396|consen 377 VAVKLTTELF--RDSGKMWQLKLQVLIESKS----DFQMLFEELFNHLRKQVCS---ELLISWASAS--EGDSLQEDTLD 445 (568)
T ss_pred HHHHhhHHHh--cchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHhcc---hhHHHHHHHh--hccchhHHHHH
Confidence 1221 22 4678889998876554321 22222222 334444443 3455554433 233 2222 23
Q ss_pred HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q psy6461 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL--GEIDRARAIYAHCS 651 (703)
Q Consensus 574 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~--g~~~~A~~~~~~a~ 651 (703)
++-.++........+.+-..|+.+..+.+...+||.+|.+....-|-+.. ++-..+.++... -+...+|..|++|+
T Consensus 446 ~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~--l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLD--LFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHH--HHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 34444444444344667788999999999999999999999888776554 777788887553 23899999999999
Q ss_pred cccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q psy6461 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS-VQAQ 692 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 692 (703)
.... .++.+|.+|..++..+|.++.+-.+.-.|++ ++.+
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 8765 3699999999999999999999888655555 6644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=132.02 Aligned_cols=203 Identities=16% Similarity=0.042 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....+..++..+...|++++|+..++++++..|.+. ..+..++.++...|++++|...+++++...|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTLNPNN------- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------
Confidence 467788889999999999999999999999888876 788889999999999999999999999988874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...+..++.++...|++ ++|...|++++...+...
T Consensus 99 ----------~~~~~~~~~~~~~~g~~-----------------------------------~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 99 ----------GDVLNNYGTFLCQQGKY-----------------------------------EQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred ----------HHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHhcccccc
Confidence 56777777776665554 889999999887543221
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
....+..++.++...|++++|...+++++...|.+ ...+..+.......|++++|...++++++..|+++. .+...
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ 209 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE--SLWLG 209 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH
Confidence 24578888888889999999999999999888876 345556666666778888888888888888776544 56667
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+.++...|+.+.|+.+.+.+...
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh
Confidence 77888888888888887776544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-12 Score=134.22 Aligned_cols=379 Identities=12% Similarity=0.091 Sum_probs=215.7
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHhcccCCCCchhH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYK--LWYNYLKLRRKQVKGKVITDPSY 88 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~--~w~~~~~~~~~~~~~~~~~~~~~ 88 (703)
++.....-|.++.+.+|.++++|...++.+. ..+.+.|..+.=++-+..|--.. -|....-+ ..+.+++
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y--------yLea~n~ 578 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY--------YLEAHNL 578 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc--------ccCccch
Confidence 3444557899999999999999999999888 89999999887777777774443 34332222 2234789
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
..|..-|+.|++.+|++...|..+|..|...|++..|.++|.+|....|.+.. .-...+-++...|++.+|...+...
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y--~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY--GRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH--HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995421 1122244556789999999999888
Q ss_pred HhhCCCCH-------HHHHHH---HHhcCCHHHHHHHHHHhhcccccccccC-CchhhhHHHHHHHHh----cCcccccc
Q psy6461 169 LKLFPEDA-------EDYIEY---LSSIERLDEAAVKLAYIVNKESFVSKHG-KSNHQLWNELCEMIS----QNPDKIRS 233 (703)
Q Consensus 169 l~~~p~~~-------~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~l~----~~~~~~~~ 233 (703)
+....... +.++.. +...|-+..|...+++.+..-.....+. .+....|.-..+... -.|+-+..
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 76543222 122221 1223333333333333221000000111 222233333222110 01111100
Q ss_pred ccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCch---H---HHHHHHHHHHhhcCCcccHHHHHHHHHH-HHHHHHHHH
Q psy6461 234 LNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLF---E---RARDIYEEAIQTVTTVRDFTQVFDAYAQ-FEELSLNKR 306 (703)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~l~~~~~~~~~~~l~~~~~~-~e~~~~~~~ 306 (703)
.... .+-.-....+.. + -|...+-..++...+...+..+-..|.. |.. .
T Consensus 737 h~l~-------------------il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~-l---- 792 (1238)
T KOG1127|consen 737 HYLI-------------------ILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL-L---- 792 (1238)
T ss_pred HHHH-------------------HHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH-c----
Confidence 0000 000000011111 0 0111111111111111111111111111 000 0
Q ss_pred HHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc-CCchhHHHHHHHHHHhcCCC
Q psy6461 307 MEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD-GKPLDIIRTYTEAVKTVDPK 385 (703)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~ 385 (703)
. . +... ...++.++... ++...++...|..+.-+.. |++.-+..+|-+++...+
T Consensus 793 -------~-e-t~~~--~~~Ai~c~Kka------------V~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep-- 847 (1238)
T KOG1127|consen 793 -------G-E-TMKD--ACTAIRCCKKA------------VSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEP-- 847 (1238)
T ss_pred -------C-C-cchh--HHHHHHHHHHH------------HHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccc--
Confidence 0 0 0000 02233334432 5566777777777766544 667777777777666532
Q ss_pred ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 386 LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARAT 457 (703)
Q Consensus 386 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 457 (703)
...-.|.+++.++..+.+++-|...|.++..++|.+. ..|...+.+....|+.-++..+|.-..
T Consensus 848 ----~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl----~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 848 ----TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL----VQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred ----cchhheeccceeEEecccHHHhhHHHHhhhhcCchhh----HHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 2345688888888888888888888888888888776 778887777777777777777776533
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-11 Score=125.81 Aligned_cols=425 Identities=16% Similarity=0.091 Sum_probs=257.4
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC--CCCHHHHH
Q psy6461 103 HKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF--PEDAEDYI 180 (703)
Q Consensus 103 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 180 (703)
-+++.+|-.+.-+....|+++.+.+.|++++...- .....|..++..+...|....|+.+++..+... |.+...++
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35788888888888888999999999999987554 347889999888888888889999999998877 66665432
Q ss_pred ---HHH-HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHH
Q psy6461 181 ---EYL-SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 181 ---~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (703)
+.+ .+.+..++++..-.++++.-+- . .. . -.+..+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~-----~---------------~~-----------------~---l~~~~~l 437 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGG-----Q---------------RS-----------------H---LKPRGYL 437 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhh-----h---------------hh-----------------h---hhhhHHH
Confidence 222 4567777777666666531000 0 00 0 0011222
Q ss_pred HHHHHHH----Hh-------CchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 257 SLADYYI----RS-------GLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 257 ~l~~~~~----~~-------~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
.+|-.|. .. ....++...++++++..|++.
T Consensus 438 ~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp--------------------------------------- 478 (799)
T KOG4162|consen 438 FLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP--------------------------------------- 478 (799)
T ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc---------------------------------------
Confidence 2222221 11 112234445555555544433
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
.+.+..+-.+ .++.+.|.+...+++..... .....|..++-+..
T Consensus 479 -----------------------------~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-----~~~~~whLLALvlS 524 (799)
T KOG4162|consen 479 -----------------------------LVIFYLALQYAEQRQLTSALDYAREALALNRG-----DSAKAWHLLALVLS 524 (799)
T ss_pred -----------------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHh
Confidence 3322222211 14555666666666665222 24556777777777
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH-HHHH-----
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV-QARV----- 477 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~-~~~~----- 477 (703)
..+++..|+.+...++...|.|. .+-..-+.++...++.++|.......+..-....+.....+-+ ..++
T Consensus 525 a~kr~~~Al~vvd~al~E~~~N~----~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEFGDNH----VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLH 600 (799)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhh----hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 77777777777777777766654 4444444555556666666655443332111000000000000 0000
Q ss_pred ------HhhHHHHHHHHHHHHhcCChhHHHhHhhcC---CCCc-----hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q psy6461 478 ------YKSIKLWSLYADLEESFGTFKAYEKGIALF---KWPY-----IFDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543 (703)
Q Consensus 478 ------~~~~~~~~~~~~~~~~~~~~~~~e~al~~~---~~~~-----~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al 543 (703)
............+....+....++..+..+ |.+. ...+|..-...+.. .+..++++.++.++-
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~---~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL---SGNDDEARSCLLEAS 677 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHH
Confidence 000111111111111211111223333322 2222 34455555543333 356799999999999
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHhCCCc
Q psy6461 544 EACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP--KTRQIYERAIESLPEE 621 (703)
Q Consensus 544 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~ 621 (703)
+++|.. ...|..-|......|...+|...|..|+..+|++ +...........+.|+.. ..+.+...+++.+|.+
T Consensus 678 ~~~~l~--~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 678 KIDPLS--ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred hcchhh--HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 999987 5688999999999999999999999999999998 455666666666666544 4455999999999998
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 622 PTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
+. .|..++.+..+.|+.++|-..|+-|+++.+
T Consensus 754 ~e--aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 754 HE--AWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HH--HHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 76 899999999999999999999999999843
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=121.26 Aligned_cols=203 Identities=14% Similarity=0.035 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
..+.+.+|.-|...|++..|+.-++++|+.+|++. ..|..++.++.+.|..+.|.+.|++|+...|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-------- 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKLGENDLADESYRKALSLAPNN-------- 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc--------
Confidence 34667778888888888888888888888888886 788888888888888888888888888888884
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc-
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY- 550 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~- 550 (703)
.++.+.|+.++..+|.+ ++|.+.|++|+.. |...
T Consensus 103 ---------GdVLNNYG~FLC~qg~~-----------------------------------~eA~q~F~~Al~~-P~Y~~ 137 (250)
T COG3063 103 ---------GDVLNNYGAFLCAQGRP-----------------------------------EEAMQQFERALAD-PAYGE 137 (250)
T ss_pred ---------cchhhhhhHHHHhCCCh-----------------------------------HHHHHHHHHHHhC-CCCCC
Confidence 78888888887776654 7788888887773 3321
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
....|.+.+-+-.+.|+++.|+..|+|++..+|..+ ...........+.|++-.|+..+++-....+-+.. ....-
T Consensus 138 ~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~--sL~L~ 213 (250)
T COG3063 138 PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYKAGDYAPARLYLERYQQRGGAQAE--SLLLG 213 (250)
T ss_pred cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH--HHHHH
Confidence 134677777777788888888888888888877763 34445556666677888888777777777663332 33333
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
+++....|+-+.|-.+=.+-...+|
T Consensus 214 iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 214 IRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5777777877666655444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=149.64 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=173.0
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR---------AGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
+++++|+..|+++++.+|+++ ..|..++.++.. .+++++|...++++++.+|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~------------- 337 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN------------- 337 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-------------
Confidence 457899999999999999987 777777765542 245899999999999999995
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
...|..++.++...|++ ++|...|+++++.+|++ +..|.
T Consensus 338 ----~~a~~~lg~~~~~~g~~-----------------------------------~~A~~~~~~Al~l~P~~--~~a~~ 376 (553)
T PRK12370 338 ----PQALGLLGLINTIHSEY-----------------------------------IVGSLLFKQANLLSPIS--ADIKY 376 (553)
T ss_pred ----HHHHHHHHHHHHHccCH-----------------------------------HHHHHHHHHHHHhCCCC--HHHHH
Confidence 78888888777776654 99999999999999999 67899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCcchHHHHHHHHHHHH
Q psy6461 557 LYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL-PEEPTRQMCLKFAEMET 635 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~ 635 (703)
.+|.++...|++++|+..+++++...|.+.....+...+ ....|++++|...++++++.. |+++. .+..++.++.
T Consensus 377 ~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~--~~~~g~~eeA~~~~~~~l~~~~p~~~~--~~~~la~~l~ 452 (553)
T PRK12370 377 YYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI--TYYHTGIDDAIRLGDELRSQHLQDNPI--LLSMQVMFLS 452 (553)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH--HHhccCHHHHHHHHHHHHHhccccCHH--HHHHHHHHHH
Confidence 999999999999999999999999999875433333322 334688999999999999885 66655 6788889999
Q ss_pred HcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6461 636 KLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRS 688 (703)
Q Consensus 636 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 688 (703)
..|++++|+..+++.... +|+ ....+..........| +.+...++...+
T Consensus 453 ~~G~~~eA~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 453 LKGKHELARKLTKEISTQ-EIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hCCCHHHHHHHHHHhhhc-cch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 999999999999997666 343 4666666666666666 466655544333
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=127.03 Aligned_cols=287 Identities=14% Similarity=0.089 Sum_probs=221.6
Q ss_pred cCCCcHHHHHHHHhhhcCCchhHHHHHHHHH--HhcCCCccCCchhHHHH--HHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 349 QNPHNVLEWHKRVRLFDGKPLDIIRTYTEAV--KTVDPKLAVGKLHTLWI--EFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~--~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
..|.-..+.+.++-..++|...+.......+ +.-.|....+...+-|- .+|++|.+.|-+.+|...++.+++-.|
T Consensus 176 ~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 176 ERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred cChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence 3455566667776666677766665443332 22233333334444443 469999999999999999999998754
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
.+ +.+..++..|.+.+++..|+.+|...+...|.+ .......+.+.+..++.
T Consensus 255 ~~----dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-----------------VT~l~g~ARi~eam~~~------- 306 (478)
T KOG1129|consen 255 HP----DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-----------------VTYLLGQARIHEAMEQQ------- 306 (478)
T ss_pred ch----hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-----------------hhhhhhhHHHHHHHHhH-------
Confidence 34 788999999999999999999999999999986 55566666776665554
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
+.|.++|+.+++.+|.+ .+...-.+.-+.-.|+++-|+..|.|.++..-.
T Consensus 307 ----------------------------~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 307 ----------------------------EDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred ----------------------------HHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 99999999999999998 344433444444578999999999999998766
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhH
Q psy6461 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP-EEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFW 663 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 663 (703)
+ +++|+.....+.-.+++|-+...|++|+.... +.....+|..++.+..-.|++..|.+.|+-|+.. +++ +..-+
T Consensus 357 s--peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~-h~eal 432 (478)
T KOG1129|consen 357 S--PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQ-HGEAL 432 (478)
T ss_pred C--hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-Ccc-hHHHH
Confidence 5 56888777777767899999999999998754 2234569999999999999999999999999998 444 68999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcccc
Q psy6461 664 AAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLF 699 (703)
Q Consensus 664 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (703)
++++-++...|+.+.|+..+.-+..++ +++-+|+|
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~-P~m~E~~~ 467 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM-PDMAEVTT 467 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC-cccccccc
Confidence 999999999999999999998777765 44445544
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-12 Score=120.34 Aligned_cols=375 Identities=13% Similarity=0.122 Sum_probs=247.5
Q ss_pred HHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH--HH-HH
Q psy6461 37 YIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI--WL-DY 112 (703)
Q Consensus 37 ~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~-~~ 112 (703)
++.++. .++-.++...|...+...|-..+.-...+..-+. | ++.+... -.++...|..+-+ |+ .+
T Consensus 136 la~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~---------g-~e~~S~~-m~~~~~~~~~dwls~wika~ 204 (564)
T KOG1174|consen 136 LARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN---------G-NEINSLV-MHAATVPDHFDWLSKWIKAL 204 (564)
T ss_pred HHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc---------c-hhhhhhh-hhheecCCCccHHHHHHHHH
Confidence 344554 3343477778888899999777666665554221 1 2222222 2344556665544 43 34
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHhcCCH
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERL 189 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~ 189 (703)
+.++.......-+-.+|-.-.+..| .+..+....+.++...|+.++|+-.|+++...+|.+... |.-++...|++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr--~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLR--CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCC--ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 5555445555566667777777788 568888899999999999999999999999999988653 22223344444
Q ss_pred HHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchH
Q psy6461 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFE 269 (703)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (703)
++-.++-..+..... ....-|+.-+......+
T Consensus 283 e~~~~L~~~Lf~~~~---------------------------------------------~ta~~wfV~~~~l~~~K--- 314 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVK---------------------------------------------YTASHWFVHAQLLYDEK--- 314 (564)
T ss_pred hhHHHHHHHHHhhhh---------------------------------------------cchhhhhhhhhhhhhhh---
Confidence 433222222110000 00112222222222222
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q psy6461 270 RARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQ 349 (703)
Q Consensus 270 ~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 349 (703)
T Consensus 315 -------------------------------------------------------------------------------- 314 (564)
T KOG1174|consen 315 -------------------------------------------------------------------------------- 314 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH
Q psy6461 350 NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 429 (703)
++..|+..-+++|+.. + +....++.-|.++...|+.++|.-.|+.|..+.|...
T Consensus 315 -----------------~~~rAL~~~eK~I~~~-~-----r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--- 368 (564)
T KOG1174|consen 315 -----------------KFERALNFVEKCIDSE-P-----RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--- 368 (564)
T ss_pred -----------------hHHHHHHHHHHHhccC-c-----ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH---
Confidence 3334444445555541 2 3455677778888889999999999999998888776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH-HHHHhcCChhHHHhHhhcCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA-DLEESFGTFKAYEKGIALFK 508 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~al~~~~ 508 (703)
..|..+...|+..|++.+|..+-..++...|.+ .+.....+ .+. ++
T Consensus 369 -~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-----------------A~~LtL~g~~V~---------------~~ 415 (564)
T KOG1174|consen 369 -EIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-----------------ARSLTLFGTLVL---------------FP 415 (564)
T ss_pred -HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-----------------hhhhhhhcceee---------------cc
Confidence 888899999999999999999888888888773 33333332 111 11
Q ss_pred CCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 509 WPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 509 ~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
+| .-.++|...++++++..|.. ..+-...+.+....|.++.+++++++.+..+|+.
T Consensus 416 dp-------------------~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--- 471 (564)
T KOG1174|consen 416 DP-------------------RMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--- 471 (564)
T ss_pred Cc-------------------hhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---
Confidence 11 11289999999999999998 4588899999999999999999999999999985
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (703)
.+-....++..-...+.+|.+.|..||..+|++.. ...++-.++...
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~--sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR--TLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH--HHHHHHHHHhcc
Confidence 46667777777777899999999999999998764 344443444333
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=123.76 Aligned_cols=445 Identities=15% Similarity=0.101 Sum_probs=261.8
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|+++.|...|-.++..+|.+--+..+....+... |+|++|...-.+.++.+|.=+..|...|..+...|++
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--------~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--------GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--------hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 79999999999999999999877776665555443 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC-----------------Ch----HHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA-----------------VP----ETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-----------------~~----~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
++|+..|.++|+.+|+ +..+...+.+.+.... ++ -.....|...++..|.++..+-.
T Consensus 87 ~eA~~ay~~GL~~d~~--n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS--NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCc--hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999999994 4666666666542210 00 00111222222222222211111
Q ss_pred HHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcc----ccccccHHHH-HHhHhhhhccchhhHHH
Q psy6461 182 YLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPD----KIRSLNVDAI-IRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 182 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 256 (703)
++ .-.++..|.-.+..+-.. .+. ..+... ..-..+|. .......+.. .+. .........
T Consensus 165 ~l-~d~r~m~a~~~l~~~~~~-~~~-~~~~~~--------~~~~~~p~~~~~~~~~~~~d~~ee~~-----~k~~a~~ek 228 (539)
T KOG0548|consen 165 YL-NDPRLMKADGQLKGVDEL-LFY-ASGIEI--------LASMAEPCKQEHNGFPIIEDNTEERR-----VKEKAHKEK 228 (539)
T ss_pred cc-ccHHHHHHHHHHhcCccc-ccc-cccccc--------CCCCCCcccccCCCCCccchhHHHHH-----HHHhhhHHH
Confidence 11 111122222222111000 000 000000 00000110 0000000000 000 001123466
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH-HHHHHHHHHH
Q psy6461 257 SLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE-LRLARLEDLM 335 (703)
Q Consensus 257 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 335 (703)
.+|+......+++.|...|..++... +...+.. -.+.+.++......+...-. ...+.. .....+.- |
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~-n~aA~~~e~~~~~~c~~~c~--------~a~E~gre~rad~kl-I 297 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLN-NIAAVYLERGKYAECIELCE--------KAVEVGRELRADYKL-I 297 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHH-HHHHHHHhccHHHHhhcchH--------HHHHHhHHHHHHHHH-H
Confidence 78888899999999999999999876 3222111 11222233222111100000 000000 00000000 0
Q ss_pred hhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 336 ERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIF 415 (703)
Q Consensus 336 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 415 (703)
.....+ ..-+..-.++++.++..|.+++... +. ...+.+.+..+++....
T Consensus 298 -------ak~~~r---------~g~a~~k~~~~~~ai~~~~kaLte~-------Rt-------~~~ls~lk~~Ek~~k~~ 347 (539)
T KOG0548|consen 298 -------AKALAR---------LGNAYTKREDYEGAIKYYQKALTEH-------RT-------PDLLSKLKEAEKALKEA 347 (539)
T ss_pred -------HHHHHH---------hhhhhhhHHhHHHHHHHHHHHhhhh-------cC-------HHHHHHHHHHHHHHHHH
Confidence 000000 0000011166778888888877642 11 33444566677777777
Q ss_pred HHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcC
Q psy6461 416 DKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFG 495 (703)
Q Consensus 416 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (703)
++..-++|.-. .--..-+.-.++.|++.+|...|++|+..+|++ ..+|...+-++...|
T Consensus 348 e~~a~~~pe~A----~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----------------a~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 348 ERKAYINPEKA----EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----------------ARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHhhChhHH----HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----------------hHHHHHHHHHHHHHh
Confidence 77666666543 333344677788999999999999999999995 888988888888877
Q ss_pred ChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 496 TFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575 (703)
Q Consensus 496 ~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 575 (703)
++ .+|.+-.+.+++++|+. ...|+.-|.++....++++|...|
T Consensus 407 ~~-----------------------------------~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 407 EY-----------------------------------PEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred hH-----------------------------------HHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 88999999999999998 579999999999999999999999
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHH
Q psy6461 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERA 614 (703)
Q Consensus 576 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (703)
..+++.+|.+. .+-..|............-.++.+++
T Consensus 450 ~eale~dp~~~--e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 450 QEALELDPSNA--EAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHhcCchhH--HHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 99999999873 34444444443333444555566663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-13 Score=132.61 Aligned_cols=217 Identities=11% Similarity=0.136 Sum_probs=148.1
Q ss_pred hhhHHHHhcCCCC----hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 18 LPYEEEILRNPFS----VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 18 ~~~e~~l~~~P~~----~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
..+.++|...|.+ ...|...+..+. .|+.++|+..|+++++.+|+++..|..++...... |++++|.
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~--------g~~~~A~ 118 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA--------GNFDAAY 118 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--------CCHHHHH
Confidence 3455667544433 455888887777 88888888888888888888888888888776553 7888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q psy6461 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 93 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 172 (703)
..|+++++.+|++..+|...|.++...|++++|...|+++++..|.+....+|. .+....+++++|+..|++.+...
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888888888532112332 23334567888888887766543
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchh
Q psy6461 173 PEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLG 252 (703)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (703)
+.....+.......|+..++ ..+..+... +...+. ..+...
T Consensus 196 ~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~---------------------~~~~~~-----------------l~~~~~ 236 (296)
T PRK11189 196 DKEQWGWNIVEFYLGKISEE-TLMERLKAG---------------------ATDNTE-----------------LAERLC 236 (296)
T ss_pred CccccHHHHHHHHccCCCHH-HHHHHHHhc---------------------CCCcHH-----------------HHHHHH
Confidence 22221232222344554333 233322210 000000 001224
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
++|+.+|.++...|++++|+..|++++...|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999997753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-12 Score=125.85 Aligned_cols=200 Identities=20% Similarity=0.145 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
...+..++..+...|++++|...+++++...|++ ...+...+.++...|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~~~~------------ 81 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----------------YLAYLALALYYQQLGEL------------ 81 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHcCCH------------
Confidence 4788999999999999999999999999999884 67777777777776654
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHH
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFE 589 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 589 (703)
++|.+.|+++++..|.+ ...+..++.++...|++++|...+++++...+......
T Consensus 82 -----------------------~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 82 -----------------------EKAEDSFRRALTLNPNN--GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred -----------------------HHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 99999999999999988 56899999999999999999999999998643332344
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHH
Q psy6461 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSF 669 (703)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 669 (703)
.+..........|++++|...+.++++..|+++. .+..++.++...|++++|...++++++. .+. .+..+...+..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~~~~ 212 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKDARAYLERYQQT-YNQ-TAESLWLGIRI 212 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHH
Confidence 5666667777889999999999999999998765 7889999999999999999999999998 444 46666688888
Q ss_pred HHHcCCHHHHHHHHHHHH
Q psy6461 670 EITHGNEDTMREMLRIKR 687 (703)
Q Consensus 670 ~~~~g~~~~~~~~~~~~~ 687 (703)
....|+.+.+....+...
T Consensus 213 ~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 888999999987765443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-11 Score=123.33 Aligned_cols=430 Identities=16% Similarity=0.203 Sum_probs=263.0
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..++.-+..++.++.....|+.+.. .|++++.+..-..+.+.+|.++.+|+.|+.-+.... ..++..++...|+
T Consensus 100 ~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt-----~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT-----QSEERKEVEELFE 174 (881)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----cCcchhHHHHHHH
Confidence 4556666778999999999999988 999999999999999999999999999998765431 2367888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhc-------cChHHHHHHHHHHHHhCCc--ccccccHHHHHHHHHhc---CChHHHHHH
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQ-------HKITQTRHVFDRALRALPI--TQHHRVWPLYLSFVKSH---AVPETAVRV 164 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~---~~~~~A~~~ 164 (703)
+++.. -.++.+|..+++++... ++++.-|.+|+++|..... +....+|..|.+++... -..++.+.+
T Consensus 175 kal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99864 45789999999998775 4577899999999986542 12356677777765432 111333444
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 165 FRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
+.+.+... .+.....
T Consensus 254 ~~~el~~~-~D~~~~~---------------------------------------------------------------- 268 (881)
T KOG0128|consen 254 FVRELKQP-LDEDTRG---------------------------------------------------------------- 268 (881)
T ss_pred HHHHHhcc-chhhhhH----------------------------------------------------------------
Confidence 44443321 1100000
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHH
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIEL 324 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (703)
.-|.... ...-++....-++.+++.
T Consensus 269 --------~~~~~~s----k~h~~~~~~~~~~~a~~~------------------------------------------- 293 (881)
T KOG0128|consen 269 --------WDLSEQS----KAHVYDVETKKLDDALKN------------------------------------------- 293 (881)
T ss_pred --------HHHHHHH----hcchHHHHhccHHHHHHH-------------------------------------------
Confidence 0000000 000000000001110000
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 325 ELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
+ ...+..|++.+...+ ..-+-|..|..+...
T Consensus 294 ------l-------------------------------------~~~~~~~e~~~q~~~------~~~q~~~~yidfe~~ 324 (881)
T KOG0128|consen 294 ------L-------------------------------------AKILFKFERLVQKEP------IKDQEWMSYIDFEKK 324 (881)
T ss_pred ------H-------------------------------------HHHHHHHHHHhhhhH------HHHHHHHHHHHHHHh
Confidence 0 001111222222211 124468888888888
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
.|+.-.-..++++++...+-.. .+|+.|+.+.-. .+-.+.+..++-+++..||.. ..+
T Consensus 325 ~G~p~ri~l~~eR~~~E~~~~~----~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t-----------------gdL 383 (881)
T KOG0128|consen 325 SGDPVRIQLIEERAVAEMVLDR----ALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT-----------------GDL 383 (881)
T ss_pred cCCchHHHHHHHHHHHhccccH----HHHhhhhhhcccccccccccccccchhhcCCchH-----------------HHH
Confidence 9998888889999887766665 889988876543 455666778888889999873 677
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
|..+...+++.+.. .......+++++... ..++..+..+..
T Consensus 384 ~~rallAleR~re~----------------------------------~~vI~~~l~~~ls~~-----~~l~~~~~~~rr 424 (881)
T KOG0128|consen 384 WKRALLALERNREE----------------------------------ITVIVQNLEKDLSMT-----VELHNDYLAYRR 424 (881)
T ss_pred HHHHHHHHHhcCcc----------------------------------hhhHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 77766444443322 011111111111110 001111111111
Q ss_pred Hc------CChHHHHHHHHHHhhccC------cchHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 564 EH------GLARHAMAVYERATGAVL------PEEMFEMFNIYIKKAAE-IYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 564 ~~------g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
.. .+++.-++.|..|..... .+....+...|..+++. .++++.||.++...+.....+- .-.|+.+
T Consensus 425 ~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i-ag~Wle~ 503 (881)
T KOG0128|consen 425 RCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI-AGKWLEA 503 (881)
T ss_pred hhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH-HHHHHHH
Confidence 11 122333333433332211 22334556666676655 6889999999998877654432 2279999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc-ccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQ-ICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
++++...|+...||.++.+|.. ..+|+....++..|.+|++..|+++......
T Consensus 504 ~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 504 INLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCP 557 (881)
T ss_pred HhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhH
Confidence 9999999999999999999975 4455445789999999999999988775443
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-09 Score=110.55 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=158.1
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6461 32 KHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLD 111 (703)
Q Consensus 32 ~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 111 (703)
..+......+..+.+.+-.+..+..|+.+|+.++.....+-.+. ..|+.++|......+++.++.|+--|--
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~--------~lg~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLN--------CLGKKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhh--------cccchHHHHHHHHHHhccCcccchhHHH
Confidence 34445555666777888888888888888888776433322111 1377888888888888888888888988
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHH---HhcCC
Q psy6461 112 YGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYL---SSIER 188 (703)
Q Consensus 112 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~---~~~~~ 188 (703)
+|.++-...++++|.+.|..||...| ++.++|..++-+....++++.....-.+.++..|.....|+.+. .-.|+
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 88888888889999999999998888 45788888887777778888888888888888888888887775 35788
Q ss_pred HHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhcc--chhhHHHHHHHHHHHhC
Q psy6461 189 LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD--QLGHLWNSLADYYIRSG 266 (703)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 266 (703)
+..|..+++....... .+. +...+.....++..+....+.-..+..++.....-+. +....-..-+++++..+
T Consensus 159 y~~A~~il~ef~~t~~----~~~-s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQN----TSP-SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHhhc----cCC-CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHh
Confidence 8888888876653221 001 1111111111111111111000111111111100000 01123345688999999
Q ss_pred chHHHHHHHHHHHhhcCCcccH
Q psy6461 267 LFERARDIYEEAIQTVTTVRDF 288 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~~~~~~~~ 288 (703)
++++|..+|...+...|+..++
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHH
Confidence 9999999999999999976543
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=119.30 Aligned_cols=312 Identities=12% Similarity=0.093 Sum_probs=229.4
Q ss_pred HHHhcCCCChHHHH--HH-HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 22 EEILRNPFSVKHWL--RY-IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 22 ~~l~~~P~~~~~w~--~~-~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.++...|.+.-.|. .- +.... ......+..++-...+.+|.++.+.-..+..+-. .|+..+|.-.|++
T Consensus 186 ~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~--------~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 186 HAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY--------NGDYFQAEDIFSS 257 (564)
T ss_pred hheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh--------hcCchHHHHHHHH
Confidence 34555666554443 22 22222 4556667778888889999999999888887543 3889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+...+|.+...--.|+-++...|++++..++..+.+.... ....-|..-+...-...++..|...-+++++.+|.+.+
T Consensus 258 ~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 258 TLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred HhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 9999999999999999999999999999999999988764 33556777777666777889999999999999999999
Q ss_pred HHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhH
Q psy6461 178 DYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHL 254 (703)
Q Consensus 178 ~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (703)
.++ .++...|+.++|.-.|..+... .|. ..+.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~L------------------------ap~---------------------rL~~ 370 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQML------------------------APY---------------------RLEI 370 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhc------------------------chh---------------------hHHH
Confidence 875 5678899999998888776421 121 1357
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
+..|...|...|+..+|...-..++...|.+.....++...+.+
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~------------------------------------ 414 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLF------------------------------------ 414 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeec------------------------------------
Confidence 78888889999999998888777776655433221221111111
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 414 (703)
.+| ..-++|.+++++++... | .+..+-...|.++...|.++.++.+
T Consensus 415 --------------~dp--------------~~rEKAKkf~ek~L~~~-P-----~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 415 --------------PDP--------------RMREKAKKFAEKSLKIN-P-----IYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred --------------cCc--------------hhHHHHHHHHHhhhccC-C-----ccHHHHHHHHHHHHhhCccchHHHH
Confidence 011 11256777888877763 3 2445567778888888888888888
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
+++.+...|+. .+...++.+....+.+++|.+.|..|+.++|++
T Consensus 461 Le~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 461 LEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88888876655 678888888888888888888888888888874
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=131.44 Aligned_cols=194 Identities=14% Similarity=0.187 Sum_probs=127.1
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc------------
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVK------------ 79 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~------------ 79 (703)
+.+..+.||.+++++|.+.++|..++.... .++=..|+..++|+++.+|.+.++...++-.+.-+..
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455668999999999999999999998887 7777889999999999999999888777655442100
Q ss_pred ----------c-----------CCCCchhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhC
Q psy6461 80 ----------G-----------KVITDPSYEDVNNTFERSLVFMH--KMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 80 ----------~-----------~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
. .......+.....+|-.|...+| .+|.++..+|-++...|++++|...|+.||+..
T Consensus 381 ~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~ 460 (579)
T KOG1125|consen 381 RNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK 460 (579)
T ss_pred HhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC
Confidence 0 00001112334444444444444 455555555555555555555555555555555
Q ss_pred CcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhh
Q psy6461 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQL 216 (703)
Q Consensus 137 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 216 (703)
| ++..+|+.++..+....+.++|+..|.+++++.|..
T Consensus 461 P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y----------------------------------------- 497 (579)
T KOG1125|consen 461 P--NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY----------------------------------------- 497 (579)
T ss_pred C--chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-----------------------------------------
Confidence 5 335555555555444444455555555555554443
Q ss_pred HHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 217 WNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 217 w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
.++|+++|-.++..|.|.+|...|-.+|...+.
T Consensus 498 -----------------------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 -----------------------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred -----------------------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 367888999999999999999999998886543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-09 Score=102.79 Aligned_cols=171 Identities=15% Similarity=0.215 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV-EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+.-.+..+|....+.++|+++-++..++.+... ...+..|+.++.-+....+.+.|+.++.+|++.+|+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---------- 212 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---------- 212 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----------
Confidence 444555666667777777777777777654332 234566777777777777777777777777777776
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
+.+.-...++++...|++ +.|.+.++++++-+|... +
T Consensus 213 -------cvRAsi~lG~v~~~~g~y-----------------------------------~~AV~~~e~v~eQn~~yl-~ 249 (389)
T COG2956 213 -------CVRASIILGRVELAKGDY-----------------------------------QKAVEALERVLEQNPEYL-S 249 (389)
T ss_pred -------ceehhhhhhHHHHhccch-----------------------------------HHHHHHHHHHHHhChHHH-H
Confidence 355666666666665554 777777777777777764 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
++.-.+..+|...|+.++.+..+.++++..+..+...+ ..+........+.|.....+-|...|+
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~---l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM---LADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH---HHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 56666667777777777777777777777776543222 222233345667777777777777774
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=125.35 Aligned_cols=259 Identities=15% Similarity=0.193 Sum_probs=173.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+..+|.-.|+.++.. +| ...++|..+|.....+++-..|+..+++|++++|+|. ++...++.-|...|.
T Consensus 299 G~L~~A~LafEAAVkq-dP-----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQ-DP-----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYTNEGL 368 (579)
T ss_pred CCchHHHHHHHHHHhh-Ch-----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHhhhhh
Confidence 5555555555555554 22 2345555555555555555555555556655555555 555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
=.+|.+.+++=+...|.- .|..-..-....+. . ..+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y-------------------~~l~~a~~~~~~~~--------------~-----~s~~----- 405 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKY-------------------VHLVSAGENEDFEN--------------T-----KSFL----- 405 (579)
T ss_pred HHHHHHHHHHHHHhCccc-------------------hhccccCccccccC--------------C-----cCCC-----
Confidence 555555555554444431 01000000000000 0 0000
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
....+....++|-.+....|...++.++..+|-++.-.|+|++|+..|+.|+...|.| ..+|+-+..-.....+..
T Consensus 406 --~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~ 481 (579)
T KOG1125|consen 406 --DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSE 481 (579)
T ss_pred --CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccH
Confidence 0011245667777888888854447899999999999999999999999999999998 568999888888878899
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC--------CChHhHHHHHHHHHHcCCHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR--------VTAGFWAAWKSFEITHGNED 677 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~g~~~ 677 (703)
+|...|.+||++-|.... ++..++-.+...|.+++|...|-.|+.+.+.. .+..+|..+..+....+..|
T Consensus 482 EAIsAY~rALqLqP~yVR--~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 482 EAISAYNRALQLQPGYVR--VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHhcCCCeee--eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999999998655 78888888889999999999999999875431 12469999998888888877
Q ss_pred HHHHHH
Q psy6461 678 TMREML 683 (703)
Q Consensus 678 ~~~~~~ 683 (703)
-+..+.
T Consensus 560 ~l~~a~ 565 (579)
T KOG1125|consen 560 LLQEAA 565 (579)
T ss_pred HHHHhc
Confidence 565543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.4e-10 Score=103.24 Aligned_cols=273 Identities=15% Similarity=0.150 Sum_probs=198.2
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH-HHHHHHHHHHHHHcC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWAELELRAG 444 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~~ 444 (703)
++.++|++.|-+.++. +| ...++.+.+|.++...|+.++|+.+-+-.++. |+-+++- ......+++-|+..|
T Consensus 49 ~Q~dKAvdlF~e~l~~-d~-----~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQE-DP-----ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred cCcchHHHHHHHHHhc-Cc-----hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhh
Confidence 7788999999988875 33 46778999999999999999999999887765 5444222 356778888899999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhh-------cCCCCchHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIA-------LFKWPYIFDIWN 517 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~-------~~~~~~~~~~~~ 517 (703)
=++.|..+|........- -......+..++....++ ++||. .-+.+....+-.
T Consensus 122 l~DRAE~~f~~L~de~ef-----------------a~~AlqqLl~IYQ~treW---~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEF-----------------AEGALQQLLNIYQATREW---EKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred hhhHHHHHHHHHhcchhh-----------------hHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHcCCccchhHHHH
Confidence 999999999887764422 134455555566655554 44443 335555666666
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK 597 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 597 (703)
.|...+......++.++|+..+.+|++.+|++ +.+-+.+|+++...|++.+|++.++++++.+|.-. ..+.......
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-~evl~~L~~~ 258 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-SEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-HHHHHHHHHH
Confidence 66655555555678899999999999999998 56888999999999999999999999999999753 2355555666
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 598 AAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+.+.|+.++.+....++.+..++.. +-+..+.+.....-.+.|.....+-+... |+ -..+..+.++....+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~~---~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~-Pt--~~gf~rl~~~~l~da 329 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGAD---AELMLADLIELQEGIDAAQAYLTRQLRRK-PT--MRGFHRLMDYHLADA 329 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCcc---HHHHHHHHHHHhhChHHHHHHHHHHHhhC-Cc--HHHHHHHHHhhhccc
Confidence 6778999999999999999988754 34444454444444667777766666653 43 344555555554443
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-08 Score=103.77 Aligned_cols=448 Identities=15% Similarity=0.107 Sum_probs=250.1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
..|++++|.....+.+...|+++.+..--.-+++..++++.|..+.+.-....- .......-+.++.+.+..++|+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~---~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV---INSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh---cchhhHHHHHHHHHcccHHHHHH
Confidence 458999999999999999999998888777888889999998865554222111 12221233444448899999999
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHh
Q psy6461 164 VFRRYLKLFPE-DAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRG 242 (703)
Q Consensus 164 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (703)
.++ .+...+. -.+...+.+.+.|+|++|..+|..+..+..- .....+-..+...-.. ..+. ...
T Consensus 101 ~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-----d~d~~~r~nl~a~~a~-------l~~~--~~q 165 (652)
T KOG2376|consen 101 TLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-----DQDEERRANLLAVAAA-------LQVQ--LLQ 165 (652)
T ss_pred HHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHh-------hhHH--HHH
Confidence 999 4433332 4446688999999999999999998643211 0001111111000000 0000 111
Q ss_pred HhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchH
Q psy6461 243 GLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDI 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 322 (703)
....-++...+..++.+-.+...|++.+|+++++.++..+... ++
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~------------l~----------------------- 210 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK------------LE----------------------- 210 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh------------hc-----------------------
Confidence 1112233456788899999999999999999999987653210 00
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHH
Q psy6461 323 ELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFY 402 (703)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 402 (703)
.++.. .+.++.-+ ..+...++.++
T Consensus 211 ------------------------------------------~~d~~--eEeie~el------------~~IrvQlayVl 234 (652)
T KOG2376|consen 211 ------------------------------------------DEDTN--EEEIEEEL------------NPIRVQLAYVL 234 (652)
T ss_pred ------------------------------------------ccccc--hhhHHHHH------------HHHHHHHHHHH
Confidence 01111 11111111 11445666667
Q ss_pred HHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCCCCCcccccchhhHHHHHH--h
Q psy6461 403 EVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE-AALRLMARATATPARPVAYHDEAETVQARVY--K 479 (703)
Q Consensus 403 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~--~ 479 (703)
...|+.++|..+|...++.+|.+.....-+-+.+..+-.-..=++ .++..++.-....+... ...+. +
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~---------l~~Ls~~q 305 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL---------LSKLSKKQ 305 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH---------HHHHHHHH
Confidence 778888888888888888766554222333333333211111011 12222222222211100 00000 0
Q ss_pred hHHHHHHHHHHHHhcCCh-hHHHhHhhcCCCCc--hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 480 SIKLWSLYADLEESFGTF-KAYEKGIALFKWPY--IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~-~~~e~al~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
-..++...+.+....+.. +..+...+.-+..+ .+.+...-.....+ ..+..+..++..+....|.+. ..+.+
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~----~~~~ka~e~L~~~~~~~p~~s-~~v~L 380 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE----KKHKKAIELLLQFADGHPEKS-KVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH----HHHhhhHHHHHHHhccCCchh-HHHHH
Confidence 011111111111111111 11111111111111 11111111111111 135788889999999999873 46788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHh--------hccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC----CCcc-h
Q psy6461 557 LYAKLEEEHGLARHAMAVYERAT--------GAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL----PEEP-T 623 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~-~ 623 (703)
..+++....|+++.|..++...+ +..-. +.+......+..+.++-+.|..++..|+..- +.+. .
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~---P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL---PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC---hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 88899999999999999999333 22211 2233334444455677777888888888642 2222 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
..+|-..+.|..+.|+-++|...++..++..+++
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 2256677889999999999999999999986766
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-11 Score=111.62 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=188.8
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|-+.+|.+.+..++...+ .++.++.+++.|.+..+.+.|..+|..++...|.++ ...+..++++...++
T Consensus 237 gm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAMEQ 305 (478)
T ss_pred cChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHHHh
Confidence 888999999999988742 367889999999999999999999999999999988 888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
.++|.++|+.+++.+|.++..+-- .. .+ |
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAc-----------ia-----------~~-----------------------y------ 334 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIAC-----------IA-----------VG-----------------------Y------ 334 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeee-----------ee-----------ec-----------------------c------
Confidence 999999999999999987522100 00 00 0
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC-cchHHHHHHHHHHHHHHhcCc
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL-PEEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~ 604 (703)
+-.++++-|...|.+.++.--.+ ++++.+++-+....+.++-++.-|+||+.... +.....+|..........|++
T Consensus 335 -fY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 335 -FYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred -ccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 01467899999999999987776 78999999999999999999999999998765 333567888777777778999
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 605 PKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
.-|...|+-||..+|++.. .+..++-+..+.|+++.|+.+|..|.+..
T Consensus 412 nlA~rcfrlaL~~d~~h~e--alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGE--ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHHHhccCcchHH--HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999765 89999999999999999999999998874
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=125.80 Aligned_cols=137 Identities=24% Similarity=0.453 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHhhccCcchHHHHHH
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH-GLARHAMAVYERATGAVLPEEMFEMFN 592 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~ 592 (703)
.+|..|+. +.++. +..+.||.+|.+|++..+-. ..+|+.+|.+|... ++.+.|+++|+++++.+|.+ ..+|.
T Consensus 2 ~v~i~~m~-~~~r~--~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMR-FMRRT--EGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWL 74 (280)
T ss_dssp HHHHHHHH-HHHHH--HHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHH
T ss_pred HHHHHHHH-HHHHh--CChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHH
Confidence 36788884 44443 23788888888887544433 46888888888874 55555888888888888877 56788
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
.|+++++..++.+.||.+|++++...|... ...+|..|+.+|.+.|+.+.+.++++|+.+..+.+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888888888888888888888888887766 55688888888888888888888888888876553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-10 Score=112.88 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+++-.+-.++...+..++|...+.++++++|.+. .+|...+.++...| ++++++..++++++.+|++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-------- 105 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-------- 105 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc--------
Confidence 3444444455667889999999999999999887 89999988888877 5899999999999999985
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..+|...+.+....|.. ..+++...++++++.+|++
T Consensus 106 ---------yqaW~~R~~~l~~l~~~---------------------------------~~~~el~~~~kal~~dpkN-- 141 (320)
T PLN02789 106 ---------YQIWHHRRWLAEKLGPD---------------------------------AANKELEFTRKILSLDAKN-- 141 (320)
T ss_pred ---------hHHhHHHHHHHHHcCch---------------------------------hhHHHHHHHHHHHHhCccc--
Confidence 78898877666555431 1256789999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCc----hHHHHHHHHHHHhCCCcchHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGI----PKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~----~~A~~~~~~al~~~p~~~~~~~ 626 (703)
..+|...+.+....|++++++..++++++.+|.+...+....++..... .++. +++.....++|..+|++.. .
T Consensus 142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S--a 219 (320)
T PLN02789 142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES--P 219 (320)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC--H
Confidence 5699999999999999999999999999999998666655555543220 1222 4677788899999999987 8
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 627 CLKFAEMETK----LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 627 ~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
|..+..++.. .++..+|...+.++++..+. .......++++...
T Consensus 220 W~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~--s~~al~~l~d~~~~ 267 (320)
T PLN02789 220 WRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN--HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHhhcccCC--cHHHHHHHHHHHHh
Confidence 9888888877 34556788888888776333 35555666666543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-12 Score=123.78 Aligned_cols=138 Identities=24% Similarity=0.516 Sum_probs=120.1
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
-+|+.|+++.+ .+.++.||.+|++|++..+-...+|+.++.++... .++.+.|..+|+++++..|.++.+|+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-------~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-------NKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-------CS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 37999999999 77799999999999977777899999999887653 25667799999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.|+.++...++.+.||.+|++++...|... ...+|..+++|+.+.|+.+.+.++.+++.+..|...
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999988654 567999999999999999999999999999988854
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-09 Score=107.51 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
+..++|+..+.++|... | ....+|...+.++...| ++++++..++++++.+|++. .+|...+.+..+.|
T Consensus 51 e~serAL~lt~~aI~ln-P-----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l~ 120 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-P-----GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKLG 120 (320)
T ss_pred CCCHHHHHHHHHHHHHC-c-----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHcC
Confidence 67788999999998873 3 35678999888888877 67999999999999999887 88988887776776
Q ss_pred CH--HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 445 QE--EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 445 ~~--~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
+. +++...++++++.+|++ ..+|...+-+....|.+
T Consensus 121 ~~~~~~el~~~~kal~~dpkN-----------------y~AW~~R~w~l~~l~~~------------------------- 158 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKN-----------------YHAWSHRQWVLRTLGGW------------------------- 158 (320)
T ss_pred chhhHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHHhhhH-------------------------
Confidence 53 67888999999999985 78888887776665544
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---CCh----HHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH---GLA----RHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
+++.+.++++++.+|.+ ..+|...+.+..+. |.. +++.....+++...|.+.+.+.+...+
T Consensus 159 ----------~eeL~~~~~~I~~d~~N--~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l 226 (320)
T PLN02789 159 ----------EDELEYCHQLLEEDVRN--NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL 226 (320)
T ss_pred ----------HHHHHHHHHHHHHCCCc--hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 88999999999999988 45888888776655 323 467777789999999886655555444
Q ss_pred HHHH--HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHhcccC
Q psy6461 596 KKAA--EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG------------------EIDRARAIYAHCSQICD 655 (703)
Q Consensus 596 ~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g------------------~~~~A~~~~~~a~~~~~ 655 (703)
.... ..+...+|...+.+++...|.++. +...+++++.... ..++|..+++..- ..|
T Consensus 227 l~~~~~~l~~~~~~~~~~~~~~~~~~~s~~--al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~d 303 (320)
T PLN02789 227 FKDDKEALVSDPEVSSVCLEVLSKDSNHVF--ALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE-VAD 303 (320)
T ss_pred HhcCCcccccchhHHHHHHHhhcccCCcHH--HHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH-hhC
Confidence 3221 024456688888888888887765 5556666665421 2356777777653 334
Q ss_pred CCCChHhHHHH
Q psy6461 656 PRVTAGFWAAW 666 (703)
Q Consensus 656 ~~~~~~~~~~~ 666 (703)
|= -...|...
T Consensus 304 ~i-r~~yw~~~ 313 (320)
T PLN02789 304 PM-RRNYWAWR 313 (320)
T ss_pred cH-HHHHHHHH
Confidence 42 24566543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-08 Score=104.85 Aligned_cols=315 Identities=13% Similarity=-0.009 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
...+..++.++...|+.+.+...+.++.+..+...+.....
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------------------------------------- 46 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERA--------------------------------------- 46 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHH---------------------------------------
Confidence 46788888889889999999888888887655322110000
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH----HcCC
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE----VNDQ 407 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~ 407 (703)
.....+....|+++++.+.+++++... |. ...++.. +..+. ..+.
T Consensus 47 ------------------------~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~-----~~~a~~~-~~~~~~~~~~~~~ 95 (355)
T cd05804 47 ------------------------HVEALSAWIAGDLPKALALLEQLLDDY-PR-----DLLALKL-HLGAFGLGDFSGM 95 (355)
T ss_pred ------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-----cHHHHHH-hHHHHHhcccccC
Confidence 000011122377788888888888763 32 2223331 22222 2444
Q ss_pred hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 408 LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
...+...+......+|... .....++.++...|++++|...++++++..|++ ...+..+
T Consensus 96 ~~~~~~~l~~~~~~~~~~~----~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----------------~~~~~~l 154 (355)
T cd05804 96 RDHVARVLPLWAPENPDYW----YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----------------AWAVHAV 154 (355)
T ss_pred chhHHHHHhccCcCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------cHHHHHH
Confidence 5555555554333344333 555566777788888888888888888888874 5566666
Q ss_pred HHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHc
Q psy6461 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--AKTLYLLYAKLEEEH 565 (703)
Q Consensus 488 ~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~ 565 (703)
+.++...|++ ++|+..+++++...|.+. ....|..++.++...
T Consensus 155 a~i~~~~g~~-----------------------------------~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 155 AHVLEMQGRF-----------------------------------KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCH-----------------------------------HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 6666665554 888888888888776431 123567788888888
Q ss_pred CChHHHHHHHHHHhhccCcch-HHHHHHH-HHHHH-HHhcCchHHHHH---HHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q psy6461 566 GLARHAMAVYERATGAVLPEE-MFEMFNI-YIKKA-AEIYGIPKTRQI---YERAIESLPEEPTRQMCLKFAEMETKLGE 639 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~-~~~~~~~-~~~~~-~~~~~~~~A~~~---~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 639 (703)
|++++|..+|++++...|... ....... .+... ...|..+.+... ........|...........+......|+
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 888888888888876555211 1111011 11111 112323222222 22222222322222234567777778888
Q ss_pred HHHHHHHHHHHhcccCC---CC----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy6461 640 IDRARAIYAHCSQICDP---RV----TAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQ 692 (703)
Q Consensus 640 ~~~A~~~~~~a~~~~~~---~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 692 (703)
.+.|...++........ .. ...+....+-.....|+.++|.+.+..+..+.+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88888888877654322 11 2334444555556778888888877666655533
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-11 Score=104.07 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=57.5
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.|+++++.+|.+ |..++.... .|++++|...|++++..+|.+...|..++...... |++++|...|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~y~~ 83 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML--------KEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--------hhHHHHHHHHHH
Confidence 455555555543 333333333 55555555555555555555555555555544432 555555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
+++.+|+++..|..+|.++...|++++|+..|+++++..|
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555555555555555555555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-10 Score=109.25 Aligned_cols=192 Identities=11% Similarity=0.060 Sum_probs=137.1
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF 101 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 101 (703)
.++...+.+...+..+. .|+++.|...|+++++.+|.++ ..|...+..+... |++++|...|+++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~--------~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS--------GDYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHH
Confidence 44667788888888776 8999999999999999999876 4666666665443 7899999999999999
Q ss_pred cCCCHH---HHHHHHHHHHhc--------cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 102 MHKMPR---IWLDYGRFLMDQ--------HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 102 ~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
.|+++. .|...+.++... |+.++|.+.|++++...|.+ ...+..+.......+. +..
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~~~~~-------~~~--- 167 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDYLRNR-------LAG--- 167 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHH-------HHH---
Confidence 988776 577777777665 77888999999999988853 4444433322111100 000
Q ss_pred hCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccc
Q psy6461 171 LFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQ 250 (703)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (703)
.......++...|++.+|+..|..+++. +|+.. .
T Consensus 168 ----~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~p~~~------------------~ 201 (235)
T TIGR03302 168 ----KELYVARFYLKRGAYVAAINRFETVVEN------------------------YPDTP------------------A 201 (235)
T ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHHH------------------------CCCCc------------------c
Confidence 0012345567889999999888877632 22110 1
Q ss_pred hhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcC
Q psy6461 251 LGHLWNSLADYYIRSGLFERARDIYEEAIQTVT 283 (703)
Q Consensus 251 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 283 (703)
..++|..+|..+...|++++|...++.+....|
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 246899999999999999999999988776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-09 Score=107.77 Aligned_cols=280 Identities=13% Similarity=-0.019 Sum_probs=175.2
Q ss_pred CCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc
Q psy6461 350 NPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
+|+.+..+...+.++. |+...+...+.++....++.. .........+..+...|++++|...+++++...|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA---TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-
Confidence 5777777766665443 667777777777666543321 2234455556667777888888888888887777765
Q ss_pred hHHHHHHH---HHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 428 DLATVWCE---WAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 428 ~~~~~~~~---~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
..+.. +.......+....+...+.......|.. ...+...+.++...|
T Consensus 78 ---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~a~~~~~~G--------- 128 (355)
T cd05804 78 ---LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDY-----------------WYLLGMLAFGLEEAG--------- 128 (355)
T ss_pred ---HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCc-----------------HHHHHHHHHHHHHcC---------
Confidence 33331 1111122344455555554433333331 333334444444444
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
++++|...++++++..|++ +..+..++.++...|++++|+..+++++...|.
T Consensus 129 --------------------------~~~~A~~~~~~al~~~p~~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 129 --------------------------QYDRAEEAARRALELNPDD--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred --------------------------CHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 4599999999999999998 568999999999999999999999999998874
Q ss_pred ch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH----HHHHHHHHcCCHHHHHHH---HHHHhcccC
Q psy6461 585 EE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL----KFAEMETKLGEIDRARAI---YAHCSQICD 655 (703)
Q Consensus 585 ~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----~~a~~~~~~g~~~~A~~~---~~~a~~~~~ 655 (703)
+. ....|.....+....|++++|..+|++++...|..... ... .........|....+..+ ........+
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~ 259 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA-LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFP 259 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH-HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcC
Confidence 32 23455567777888999999999999998776632221 111 222333345654444444 222211111
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 656 PRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
.........+........|..+.+...++..+....
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 260 DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 121233334666777777999999998876655443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=112.91 Aligned_cols=257 Identities=14% Similarity=0.150 Sum_probs=178.0
Q ss_pred cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHh--------CCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhC-
Q psy6461 102 MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA--------LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF- 172 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 172 (703)
.|.-......++..+..+|+++.|..++.+|++. +|. .......++.++...+++.+|+.+|++++.+-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3555566667899999999999999999999998 442 23344557889999999999999999999752
Q ss_pred ----CCCHH---HHH---HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHh
Q psy6461 173 ----PEDAE---DYI---EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRG 242 (703)
Q Consensus 173 ----p~~~~---~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (703)
++++. .+. .++...|++++|...++.+++.-. . ++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~--------------~---~~~~~--------------- 320 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE--------------K---LLGAS--------------- 320 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH--------------H---hhccC---------------
Confidence 33332 233 346789999999999999874211 0 00011
Q ss_pred HhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchH
Q psy6461 243 GLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDI 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 322 (703)
++........++..+...+++++|..+|+++++...+..
T Consensus 321 -----~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~------------------------------------ 359 (508)
T KOG1840|consen 321 -----HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP------------------------------------ 359 (508)
T ss_pred -----hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc------------------------------------
Confidence 112235677889999999999999999999887532110
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCcc--CCchhHHHHHH
Q psy6461 323 ELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLA--VGKLHTLWIEF 398 (703)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 398 (703)
-..+|.-......++.++ .|++.+|.+.|++|+.......- ..........+
T Consensus 360 ------------------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 360 ------------------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ------------------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 001111111111222222 29999999999999987422111 11223455667
Q ss_pred HHHHHHcCChHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLV----PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
|..+.+.+.+.+|..+|.++..+ .|.++ +....+..++.+|.+.|++++|.++.++++.
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88888999999999999887665 34443 3347899999999999999999999988773
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=107.02 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=76.3
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhccC-
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL-MDQHK- 121 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~- 121 (703)
++.+++...++++++.+|++.+.|..++..+... |++++|...|+++++..|+++.++..++.++ ...|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--------g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--------NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 4455666666666666666666666666655442 5666666666666666666666666666653 44454
Q ss_pred -hHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 122 -ITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 122 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.++|+.+++++++.+| .+..++..++..+.+.|++++|+..|+++++.+|.+.
T Consensus 125 ~~~~A~~~l~~al~~dP--~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 125 MTPQTREMIDKALALDA--NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred CcHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3666666666666666 3455666666666666666666666666666665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=102.11 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=104.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHH
Q psy6461 50 NTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVF 129 (703)
Q Consensus 50 ~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 129 (703)
..+|+++++.+|++ |...+..... .|++++|...|++++..+|.++.+|..+|.++...|++++|...|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~--------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQ--------EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 37899999999986 3344444333 389999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 130 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
++++..+| .++..|..++.++...|++++|+..|+++++..|++...+
T Consensus 82 ~~Al~l~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999 5689999999999999999999999999999999997655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=107.11 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=106.9
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh--HHHH
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS--YEDV 91 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~A 91 (703)
+.-..++++++.+|.+.+.|..++..+. .|+++.|...|+++++..|++..+|..++...... .|+ .++|
T Consensus 57 ~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~-------~g~~~~~~A 129 (198)
T PRK10370 57 AQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ-------AGQHMTPQT 129 (198)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------cCCCCcHHH
Confidence 3346899999999999999999999998 99999999999999999999999999999854222 244 5899
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
..+++++++.+|+++.++..++..+...|++++|...++++++..|.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999994
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-09 Score=111.86 Aligned_cols=259 Identities=14% Similarity=0.183 Sum_probs=178.4
Q ss_pred hcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCC--ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-
Q psy6461 348 RQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPK--LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP- 422 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 422 (703)
..+|.-.......+..+ .|+++.|...++.|++.+... ...+........+|.+|...+++.+|..+|++++.+.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34455555555555443 399999999999999872110 0111233444568999999999999999999999872
Q ss_pred ----CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChh
Q psy6461 423 ----YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFK 498 (703)
Q Consensus 423 ----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (703)
+.++ ....++..++.+|...|++++|...+++|+++....... ..+++-..+..+....
T Consensus 273 ~~~G~~h~-~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~------------~~~~v~~~l~~~~~~~---- 335 (508)
T KOG1840|consen 273 EVFGEDHP-AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA------------SHPEVAAQLSELAAIL---- 335 (508)
T ss_pred HhcCCCCH-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc------------ChHHHHHHHHHHHHHH----
Confidence 3443 556789999999999999999999999998765321000 0122222222111111
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC-----CCc-chHHHHHHHHHHHHHcCChHHHH
Q psy6461 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC-----PPR-YAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 499 ~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
. ..+++++|..++++++++. +++ .....+..+|.++...|++++|+
T Consensus 336 --------------------------~--~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 336 --------------------------Q--SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred --------------------------H--HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 1 1345688888888887753 222 12468999999999999999999
Q ss_pred HHHHHHhhccCc-----ch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHh----CCCcchH-HHHHHHHHHHHHcCCH
Q psy6461 573 AVYERATGAVLP-----EE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIES----LPEEPTR-QMCLKFAEMETKLGEI 640 (703)
Q Consensus 573 ~~~~~al~~~p~-----~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~-~~~~~~a~~~~~~g~~ 640 (703)
.+|++|++.... +. ...+|..-... .+.+.+.+|..+|.+++-. .|+++.+ -.+.+++..|.++|++
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 999999987521 11 12344433333 5678889999999998864 5666543 3778999999999999
Q ss_pred HHHHHHHHHHhc
Q psy6461 641 DRARAIYAHCSQ 652 (703)
Q Consensus 641 ~~A~~~~~~a~~ 652 (703)
+.|..+.++++.
T Consensus 467 e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 467 EAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-08 Score=100.94 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=93.6
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh----cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHH
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK----NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYE 89 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~----~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (703)
.+.+..-...-...|.++..|+.|+.-.. .++...+..+|+++| .+-+++.+|..++++....... ...+++++
T Consensus 130 ~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~~~~~-~~~~~d~k 207 (881)
T KOG0128|consen 130 EKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVGFGNV-AKKSEDYK 207 (881)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHhcccc-ccccccch
Confidence 34445566667789999999999987655 577888999999998 4678999999999998765432 23457899
Q ss_pred HHHHHHHHHHHhcC----CCHHHHHHHHHHHHh---ccChHHHHHHHHHHHHhCC
Q psy6461 90 DVNNTFERSLVFMH----KMPRIWLDYGRFLMD---QHKITQTRHVFDRALRALP 137 (703)
Q Consensus 90 ~A~~~~~~al~~~p----~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p 137 (703)
..+.+|+++++... .-..+|.+|..++.. .-..++...+|.+.|. .|
T Consensus 208 ~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~-~~ 261 (881)
T KOG0128|consen 208 KERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK-QP 261 (881)
T ss_pred hhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-cc
Confidence 99999999998853 345888888877654 3445778888988887 44
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-07 Score=93.34 Aligned_cols=425 Identities=15% Similarity=0.099 Sum_probs=227.9
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHH--HhcCCHH
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYL--SSIERLD 190 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~~~ 190 (703)
++.....|++++|.....+.|...|++ ......-.-.....+.++.|.++.+.-....-.+.-.+-..| .+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd--~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDD--EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCc--HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHH
Confidence 455566788999999999999998853 333333333344667788877554443322112211122222 4677888
Q ss_pred HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHH
Q psy6461 191 EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFER 270 (703)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (703)
+|++.++.. +. ...-+....+.++.+.|++++
T Consensus 97 ealk~~~~~-~~-----------------------------------------------~~~~ll~L~AQvlYrl~~yde 128 (652)
T KOG2376|consen 97 EALKTLKGL-DR-----------------------------------------------LDDKLLELRAQVLYRLERYDE 128 (652)
T ss_pred HHHHHHhcc-cc-----------------------------------------------cchHHHHHHHHHHHHHhhHHH
Confidence 888877622 10 011255666888889999999
Q ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q psy6461 271 ARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQN 350 (703)
Q Consensus 271 A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (703)
|.++|+.+++...+..+- .+ +. .+-.+
T Consensus 129 aldiY~~L~kn~~dd~d~------------~~------------------------r~-nl~a~---------------- 155 (652)
T KOG2376|consen 129 ALDIYQHLAKNNSDDQDE------------ER------------------------RA-NLLAV---------------- 155 (652)
T ss_pred HHHHHHHHHhcCCchHHH------------HH------------------------HH-HHHHH----------------
Confidence 999999988865432110 00 00 00000
Q ss_pred CCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-------C
Q psy6461 351 PHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-------Y 423 (703)
Q Consensus 351 p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~ 423 (703)
+... ... ..+.+... +..+.+..++.|..+...|++.+|+++++++++++ .
T Consensus 156 ---------------~a~l-~~~-~~q~v~~v-----~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 156 ---------------AAAL-QVQ-LLQSVPEV-----PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred ---------------HHhh-hHH-HHHhccCC-----CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 0000 000 11111111 12345667778888899999999999999994432 1
Q ss_pred CCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh--
Q psy6461 424 TKV----EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF-- 497 (703)
Q Consensus 424 ~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 497 (703)
.+. .++..+..+++-++...|+.++|..+|...++.+|.|.. .+...--.+-...++.
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~----------------~~Av~~NNLva~~~d~~~ 277 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP----------------SLAVAVNNLVALSKDQNY 277 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch----------------HHHHHhcchhhhcccccc
Confidence 221 123456777777888899999999999999999887631 1111100010001110
Q ss_pred --------------hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 498 --------------KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 498 --------------~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
.+-+.++..+....--.++..-+ ++..+ .+..+.+++...+--...|....+.+....-..
T Consensus 278 ~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~--lL~l~-tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~-- 352 (652)
T KOG2376|consen 278 FDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA--LLALF-TNKMDQVRELSASLPGMSPESLFPILLQEATKV-- 352 (652)
T ss_pred CchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHH--
Confidence 00111111110000000000000 11111 223344444433322233333222222222222
Q ss_pred HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh----CCCcchHHHHHHHHH-HHHHcC
Q psy6461 564 EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES----LPEEPTRQMCLKFAE-METKLG 638 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~a~-~~~~~g 638 (703)
+.....+|..++....+.+|.++. .+....++..+..|++..|..+++..+.. .++-.+.+..+.++. ++.+.+
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~-~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSK-VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK 431 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc
Confidence 222678889999999999998743 35566677777789999999999833321 111111123344444 344555
Q ss_pred CHHHHHHHHHHHhcc-----cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 639 EIDRARAIYAHCSQI-----CDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
+.+.|..++..|+.- .....-..+|...+.|+..+|+.+++..+++
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 544444444444331 0111146788889999999999999988874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-08 Score=93.47 Aligned_cols=295 Identities=13% Similarity=0.065 Sum_probs=211.2
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHH
Q psy6461 362 RLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELEL 441 (703)
Q Consensus 362 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 441 (703)
.+.+|++..|.+...+.-+.- + ...-.++.-+..--..|+.++|-.++.++.+..++.. -.+.+..+++..
T Consensus 94 ~l~eG~~~qAEkl~~rnae~~-e-----~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarlll 164 (400)
T COG3071 94 KLFEGDFQQAEKLLRRNAEHG-E-----QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLLL 164 (400)
T ss_pred HHhcCcHHHHHHHHHHhhhcC-c-----chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHHH
Confidence 345599999999988865541 1 2233455556666689999999999999999844332 256778888899
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcC------CCCc----
Q psy6461 442 RAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALF------KWPY---- 511 (703)
Q Consensus 442 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~------~~~~---- 511 (703)
..|+...|+.-++++.+..|.+ +.+.....+.+...|+++-....+... .++.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~-----------------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRH-----------------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCC-----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH
Confidence 9999999999999999999985 788888888888888872222222211 1111
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHH
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
....|.+.+..... .+..+.-....++.-...-++ +.+-+.++.-+...|+.++|.++.+.+++..-++. +
T Consensus 228 e~~a~~glL~q~~~---~~~~~gL~~~W~~~pr~lr~~--p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L- 298 (400)
T COG3071 228 EQQAWEGLLQQARD---DNGSEGLKTWWKNQPRKLRND--PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L- 298 (400)
T ss_pred HHHHHHHHHHHHhc---cccchHHHHHHHhccHHhhcC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-
Confidence 22344444432211 111222222333222222223 56889999999999999999999999999876542 2
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
..++... +-++...-.+..++.++..|++|. ++..++.++.+.+.+.+|...++.|++.. ++ ..-|+..+....
T Consensus 299 ~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~--L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s--~~~~~~la~~~~ 372 (400)
T COG3071 299 CRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPL--LLSTLGRLALKNKLWGKASEALEAALKLR-PS--ASDYAELADALD 372 (400)
T ss_pred HHHHhhc-CCCCchHHHHHHHHHHHhCCCChh--HHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CC--hhhHHHHHHHHH
Confidence 2222222 246777888899999999999997 99999999999999999999999999884 33 678889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhhcc
Q psy6461 672 THGNEDTMREMLRIKRSVQAQYNTQV 697 (703)
Q Consensus 672 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 697 (703)
+.|....+..+.+.+-.+-.+++.++
T Consensus 373 ~~g~~~~A~~~r~e~L~~~~~~~~~s 398 (400)
T COG3071 373 QLGEPEEAEQVRREALLLTRQPNLPS 398 (400)
T ss_pred HcCChHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999877777666666543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-07 Score=99.24 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchH
Q psy6461 434 CEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIF 513 (703)
Q Consensus 434 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~ 513 (703)
+.+++.+...|++++|+..+++|+...|.. ++++..-+.++...|++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----------------~ely~~KarilKh~G~~---------------- 244 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----------------VELYMTKARILKHAGDL---------------- 244 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----------------HHHHHHHHHHHHHCCCH----------------
Confidence 333555555666666666666666666652 55555555555555544
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC--cchHHHHH
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL--PEEMFEMF 591 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 591 (703)
++|...++.|-++++.+ --+-...+.+..+.|.+++|.+++....+... ...-..+.
T Consensus 245 -------------------~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ 303 (517)
T PF12569_consen 245 -------------------KEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ 303 (517)
T ss_pred -------------------HHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence 55666666666665554 33445555555566666666655554443331 11000000
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHH---HH
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC--LKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA---AW 666 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~ 666 (703)
+ +| ...|..+.+.|++..|.+.|....++... +.+ .+
T Consensus 304 -------------------------------c--~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~-----~~~DQfDF 345 (517)
T PF12569_consen 304 -------------------------------C--MWFETECAEAYLRQGDYGLALKRFHAVLKHFDD-----FEEDQFDF 345 (517)
T ss_pred -------------------------------H--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HhcccccH
Confidence 1 33 34456666778888888887777665321 111 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 667 KSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 667 ~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
-.++..-|++..+.+|++..-++.
T Consensus 346 H~Yc~RK~t~r~Y~~~L~~ed~l~ 369 (517)
T PF12569_consen 346 HSYCLRKMTLRAYVDMLRWEDKLR 369 (517)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhh
Confidence 345666677777777776555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=103.35 Aligned_cols=202 Identities=12% Similarity=-0.033 Sum_probs=144.2
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...+.++..|..+...|+++.|+..|++++...|.++ .....++.++..+...|++++|+..|+++++..|++..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---- 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD---- 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc----
Confidence 4577889999999999999999999999999988775 22357899999999999999999999999999997510
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
....++..+.++...... .....++.++|.+.|+++++..|++
T Consensus 106 ----------~~~a~~~~g~~~~~~~~~---------------------------~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 106 ----------ADYAYYLRGLSNYNQIDR---------------------------VDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred ----------hHHHHHHHHHHHHHhccc---------------------------ccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 112344444444322100 0001134589999999999999998
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc-hHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP-TRQMCL 628 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~ 628 (703)
...+..+..+....+.. . .-.......+...|++.+|...|++++...|+++ ...+|.
T Consensus 149 --~~~~~a~~~~~~~~~~~-------~------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~ 207 (235)
T TIGR03302 149 --EYAPDAKKRMDYLRNRL-------A------------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALA 207 (235)
T ss_pred --hhHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHH
Confidence 33343332221110000 0 0011233445668999999999999999999875 345899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
..+..+.+.|++++|..+++......
T Consensus 208 ~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 208 RLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999988876553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-09 Score=118.57 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=134.2
Q ss_pred HHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh
Q psy6461 23 EILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF 101 (703)
Q Consensus 23 ~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 101 (703)
.....|.++++...+++... .|..++|..+++++++.+|++...+..++..+.++ +.+++|...+++++..
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~--------~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ--------QGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--------ccHHHHHHHHHHHhhc
Confidence 34567899999999999998 99999999999999999999999999999988765 7899999999999999
Q ss_pred cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 102 MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
.|+++.....++.++...|++++|..+|++++..+| ..+.+|..++..+.+.|+.++|...|++++.....-...|..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 999999999999999999999999999999999787 458899999999999999999999999999876544444444
Q ss_pred HH
Q psy6461 182 YL 183 (703)
Q Consensus 182 ~~ 183 (703)
++
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 44
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-07 Score=90.13 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|+|.+|.+...++-+..+...-.++.-+......|+.+.+-+++.++-+.-|++ .-......+++...+|++..|+.-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHHHH
Confidence 556666666666555545444445555555555566666666666665543321 1222233344555555566666666
Q ss_pred HHHHhhCCCCHHHH---HHHHHhcCCHHHHHHHHHHhhccccccccc-CCchhhhHHHHHHHHhcCccccccccHHHHHH
Q psy6461 166 RRYLKLFPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKH-GKSNHQLWNELCEMISQNPDKIRSLNVDAIIR 241 (703)
Q Consensus 166 ~~~l~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 241 (703)
.+.++..|.+.... .+.+...|++.+..+++.++.+..-+.... ..-....|.....-.. ++. ..+.+.
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~-~~~-----~~~gL~- 249 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR-DDN-----GSEGLK- 249 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh-ccc-----cchHHH-
Confidence 66666666665532 345556666666555555543211100000 0000011111111000 000 011111
Q ss_pred hHhhhhc---cchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q psy6461 242 GGLRRYT---DQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSE 318 (703)
Q Consensus 242 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 318 (703)
..-+..| ...+++-..++.-+.++|+.++|.++.+.+++..-+.. +...+.
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~---------------------- 303 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP---------------------- 303 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh----------------------
Confidence 0111111 12346778889999999999999999999998643321 110000
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHH
Q psy6461 319 EDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEF 398 (703)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (703)
... -++...-++..++.+...+ ..+.++..+
T Consensus 304 -----------------------------~l~--------------~~d~~~l~k~~e~~l~~h~------~~p~L~~tL 334 (400)
T COG3071 304 -----------------------------RLR--------------PGDPEPLIKAAEKWLKQHP------EDPLLLSTL 334 (400)
T ss_pred -----------------------------hcC--------------CCCchHHHHHHHHHHHhCC------CChhHHHHH
Confidence 000 1455556666677776632 356799999
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
|.++.+++.+.+|...|+.+++..|+. .-|..++..+.+.|++.+|..+++.++.
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999987654 6788999999999999999999999874
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-06 Score=79.36 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=121.3
Q ss_pred HhhcCchhHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 40 HKKNAPKAIINTIYERSLKELP---GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 40 ~~~~~~~~~a~~~~e~al~~~P---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+....|+..|++.++-.+..+- ++.++|+.+..+++ |++++|...|.-+.....-+..+|..++-+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----------GDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----------ccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 3336788999999888875544 47799999999865 8899999999988877655779999999999
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKL 196 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~ 196 (703)
+-.|.+.+|..+..++-+ .|- --..+..+-.+.|+ ++-+-.|...++--.++--.+.+.-...-.|.+|+.+|
T Consensus 102 FyLg~Y~eA~~~~~ka~k-~pL-----~~RLlfhlahklnd-Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-TPL-----CIRLLFHLAHKLND-EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-ChH-----HHHHHHHHHHHhCc-HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999888643 332 11222233334444 34444444444322111112333334455688899998
Q ss_pred HHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHH
Q psy6461 197 AYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYE 276 (703)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 276 (703)
..++. .+|+-+ .+-..++..|.+..-++-+.++++
T Consensus 175 krvL~------------------------dn~ey~---------------------alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 175 KRVLQ------------------------DNPEYI---------------------ALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHh------------------------cChhhh---------------------hhHHHHHHHHHhcchhhhHHHHHH
Confidence 88763 122110 122334555666777777888888
Q ss_pred HHHhhcCCcc
Q psy6461 277 EAIQTVTTVR 286 (703)
Q Consensus 277 ~~l~~~~~~~ 286 (703)
--+...|++.
T Consensus 210 vYL~q~pdSt 219 (557)
T KOG3785|consen 210 VYLRQFPDST 219 (557)
T ss_pred HHHHhCCCcH
Confidence 8888877654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=93.35 Aligned_cols=112 Identities=8% Similarity=0.074 Sum_probs=91.3
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.|++++..+|.+......++.... .+++++|...|+++++.+|.++..|..++.+.... |++++|...|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--------KEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 467888888888877777777777 88888888888888888888888888887776554 778888888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+++.+|+++..|..++.++...|+.++|...|+++++..|.
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 88888888888888888888888888888888888888884
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-09 Score=107.98 Aligned_cols=151 Identities=24% Similarity=0.386 Sum_probs=123.9
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cC------------chhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NA------------PKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~------------~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~ 80 (703)
.++..+|++.++.+|.|.++|+.++.+.. .- -.++..++|++||+.+|++..+|+.|++.....
T Consensus 2 ~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~--- 78 (321)
T PF08424_consen 2 RKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV--- 78 (321)
T ss_pred chHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Confidence 34567999999999999999999998886 21 146778999999999999999999999876543
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---cChHHHHHHHHHHHHhCCccc----------------c
Q psy6461 81 KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ---HKITQTRHVFDRALRALPITQ----------------H 141 (703)
Q Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~----------------~ 141 (703)
.+.+...+.+++++..+|+++.+|..|+.+.... .+++..+.+|.++|+...... .
T Consensus 79 -----~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~ 153 (321)
T PF08424_consen 79 -----WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFM 153 (321)
T ss_pred -----CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Confidence 3567788999999999999999999999998773 478999999999998654311 1
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q psy6461 142 HRVWPLYLSFVKSHAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 172 (703)
..+...++.|....|..+.|+.+++..++.+
T Consensus 154 l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 154 LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 2345556778888899999999999988875
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-08 Score=98.15 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.|-.-|.-..++|++..|...|..+|.++|++......+|...+.+..+.|+..+|+...+.|+.++|.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 344456666778999999999999999999998888889999999999999999999999999999874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-06 Score=89.30 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=83.8
Q ss_pred CCCcHHHHHHH--Hhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Q psy6461 350 NPHNVLEWHKR--VRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK 425 (703)
Q Consensus 350 ~p~~~~~~~~~--~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 425 (703)
.|....+|..+ ++++. |+.++|++..++||... | ..+++++.-|+++...|++++|...++.|-.+++.+
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-P-----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-P-----TLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 34445566443 55543 99999999999999984 3 468899999999999999999999999999998877
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 426 VEDLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
. .+-...+..+++.|+.++|.+++......+
T Consensus 262 R----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 262 R----YINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 5 777778888999999999999998876655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-08 Score=109.58 Aligned_cols=236 Identities=10% Similarity=0.000 Sum_probs=158.2
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
+.+..+|..++..+...|++++|..+.+.++..+|+.+ .+|+..|-++.+.++.+.+..+ +++...+.+-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~--- 98 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK--- 98 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc---
Confidence 45788999999999999999999999999999999998 8888888899999999988777 77777665411
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
..+-..+.......+. +-.+...++ ..+. .+|+.++|.++|+++++.+|+
T Consensus 99 ------------~~~ve~~~~~i~~~~~---------------~k~Al~~LA-~~Yd--k~g~~~ka~~~yer~L~~D~~ 148 (906)
T PRK14720 99 ------------WAIVEHICDKILLYGE---------------NKLALRTLA-EAYA--KLNENKKLKGVWERLVKADRD 148 (906)
T ss_pred ------------hhHHHHHHHHHHhhhh---------------hhHHHHHHH-HHHH--HcCChHHHHHHHHHHHhcCcc
Confidence 1111111111110110 001111111 1111 245679999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH----
Q psy6461 549 RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR---- 624 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---- 624 (703)
+ +.+...+|.++... +.++|+.++.+|+..+- ..+++..+..+|++.+...|++...
T Consensus 149 n--~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i----------------~~kq~~~~~e~W~k~~~~~~~d~d~f~~i 209 (906)
T PRK14720 149 N--PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI----------------KKKQYVGIEEIWSKLVHYNSDDFDFFLRI 209 (906)
T ss_pred c--HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH----------------hhhcchHHHHHHHHHHhcCcccchHHHHH
Confidence 9 67889999998888 99999999999987632 2335666666666666666655432
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHH---HHHHHHHcCCHHHHHHHH
Q psy6461 625 --------------QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAA---WKSFEITHGNEDTMREML 683 (703)
Q Consensus 625 --------------~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~ 683 (703)
.++...-..+....++++++.+++++++.. +.+.....+. |..-+..+-.++++.++.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s 284 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYKEKYKDHSLLEDYLKMS 284 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHHHHccCcchHHHHHHHh
Confidence 123333345556778999999999999995 4433333332 333333334566666664
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-08 Score=111.50 Aligned_cols=268 Identities=10% Similarity=0.108 Sum_probs=165.3
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhC
Q psy6461 57 LKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 57 l~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
....|.+.+.|..++..+... +++++|.++++.+++.+|+++.+|+..|.++.+.+++..+..+ +++...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~--------~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSE--------NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 456789999999999887554 8899999999999999999999999999999998888887777 777766
Q ss_pred CcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH---HHHHHhcCCHHHHHHHHHHhhcccccccccCCch
Q psy6461 137 PITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY---IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213 (703)
Q Consensus 137 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (703)
+.+ .-|.....++...+ ..|++..++ ...|...|+.++|...+++++..
T Consensus 94 ~~~---~~~~~ve~~~~~i~--------------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----------- 145 (906)
T PRK14720 94 SQN---LKWAIVEHICDKIL--------------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----------- 145 (906)
T ss_pred ccc---cchhHHHHHHHHHH--------------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------
Confidence 642 11322222222211 123333222 23345667777777776666532
Q ss_pred hhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHH
Q psy6461 214 HQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFD 293 (703)
Q Consensus 214 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~ 293 (703)
+|. ...+.+.+|-.|... ++++|+..+.+++...-+..++..+..
T Consensus 146 -------------D~~---------------------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 146 -------------DRD---------------------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred -------------Ccc---------------------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 121 135677888888877 888999999888875322111111111
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHH
Q psy6461 294 AYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIR 373 (703)
Q Consensus 294 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~ 373 (703)
-|.. .+..+|++++.++...
T Consensus 191 ~W~k------------------------------------------------~~~~~~~d~d~f~~i~------------ 210 (906)
T PRK14720 191 IWSK------------------------------------------------LVHYNSDDFDFFLRIE------------ 210 (906)
T ss_pred HHHH------------------------------------------------HHhcCcccchHHHHHH------------
Confidence 1110 1233344333332222
Q ss_pred HHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-----------
Q psy6461 374 TYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----------- 442 (703)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------- 442 (703)
++....... +....++..+-..|...+++++++.+++.+|+.+|+|. .....++..+..
T Consensus 211 --~ki~~~~~~----~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~----~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 211 --RKVLGHREF----TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN----KAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred --HHHHhhhcc----chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch----hhHHHHHHHHHHHccCcchHHHH
Confidence 222211110 12344555566677788899999999999999998887 444444444422
Q ss_pred -------c--CCHHHHHHHHHHHhcCCCCCcccc
Q psy6461 443 -------A--GQEEAALRLMARATATPARPVAYH 467 (703)
Q Consensus 443 -------~--~~~~~A~~~~~~a~~~~p~~~~~~ 467 (703)
+ .++..|+.-|++-+...+.+.-++
T Consensus 281 l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 281 LKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHhccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 1 346778888888888777765333
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-07 Score=85.69 Aligned_cols=195 Identities=12% Similarity=0.034 Sum_probs=148.8
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHH---HHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFY---EVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 442 (703)
.+.++.++.+...+...+.. .. -.+.|..+-++. ...|+.+-|...+++.....|++. .+-...|..+--
T Consensus 26 rnseevv~l~~~~~~~~k~~-~~--g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~----RV~~lkam~lEa 98 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG-AL--GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK----RVGKLKAMLLEA 98 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc-cc--CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHH
Confidence 45677777777766553222 11 134555554443 468899999999999888889887 777778887878
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
.|++++|.++|++.++-+|.+ ...+-.-+.+...+|.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~-----------------~v~~KRKlAilka~GK-------------------------- 135 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTD-----------------TVIRKRKLAILKAQGK-------------------------- 135 (289)
T ss_pred hhchhhHHHHHHHHhccCcch-----------------hHHHHHHHHHHHHcCC--------------------------
Confidence 999999999999999999985 3444444444455444
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH--
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-- 600 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-- 600 (703)
.-+|.+-+..-++.++.+ .++|..++.+|...|++++|.-.+|..+-..|.+ +..+..|.+...-
T Consensus 136 ---------~l~aIk~ln~YL~~F~~D--~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 136 ---------NLEAIKELNEYLDKFMND--QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQG 202 (289)
T ss_pred ---------cHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHh
Confidence 368888899999999998 7899999999999999999999999999999987 4455555555433
Q ss_pred -hcCchHHHHHHHHHHHhCCCcch
Q psy6461 601 -IYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 601 -~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
..++.-||++|.++++.+|.+..
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHH
Confidence 45678899999999999996544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=92.50 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=105.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHH
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
+.|+++++..|++...-..++...... |++++|...|++++..+|.++.+|..++.++...|++++|...|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--------GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999988777777766553 889999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 131 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+++...|. ....|..++.++...|+++.|+..|+++++.+|++..
T Consensus 76 ~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 76 LAAALDPD--DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHhcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 99999994 5788888899999999999999999999999998864
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-08 Score=103.72 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
...+-..++..+...|-...|..+|++. +.|...+.+|...|+..+|..+..+-++.+|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-------- 456 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-------- 456 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--------
Confidence 4556677889999999999999999984 77888888999999999999999999996665
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
+.+|...+++. ++.+.||++.+.+.+-.. .+-..+. ...+..+++.++...++..++.+|-.
T Consensus 457 ----------~~lyc~LGDv~---~d~s~yEkawElsn~~sa-rA~r~~~---~~~~~~~~fs~~~~hle~sl~~nplq- 518 (777)
T KOG1128|consen 457 ----------PRLYCLLGDVL---HDPSLYEKAWELSNYISA-RAQRSLA---LLILSNKDFSEADKHLERSLEINPLQ- 518 (777)
T ss_pred ----------chhHHHhhhhc---cChHHHHHHHHHhhhhhH-HHHHhhc---cccccchhHHHHHHHHHHHhhcCccc-
Confidence 56776666654 344778888877632211 1000000 00113578899999999999999998
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
...|+.+|.+..+.++...|.+.|.+++...|++ .+-|+.....+++.++..+|...++.|++.+-++.. +|.+|
T Consensus 519 -~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~--~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--iWENy 593 (777)
T KOG1128|consen 519 -LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN--AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--IWENY 593 (777)
T ss_pred -hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc--hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--eeech
Confidence 5699999999999999999999999999999998 788999999999999999999999999999866555 99999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
-.+-...|.++.|.+.|.+.+.+
T Consensus 594 mlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHh
Confidence 99999999999999999999876
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.1e-08 Score=106.98 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
++|...++.+++..|++ ..++..++.++.+.+.+++|+..+++++...|++. ...........+.|++++|..+|+
T Consensus 103 ~ea~~~l~~~~~~~Pd~--~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDS--SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred HHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcchHHHHHHHH
Confidence 88999999999999988 56888999999999999999999999999988874 445556666777889999999999
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 613 RAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 613 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+++..+|+++. .|+.++..+...|+.++|...|++|++...+.
T Consensus 179 ~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 179 RLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99988887655 88999999999999999999999998875544
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-07 Score=85.38 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=151.2
Q ss_pred cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy6461 43 NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ 119 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 119 (703)
.-+.++..++.+..+.-.+.. .+.|..|=+.....+. .|+..-|...+.+.-...|+|+++-...+..+...
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld-----~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD-----TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 566778888888887766655 6788776555444332 26788899999998888999999999999999999
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH---HHHHhcCCHHHHHHHH
Q psy6461 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI---EYLSSIERLDEAAVKL 196 (703)
Q Consensus 120 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~~~~~~~A~~~~ 196 (703)
|++++|..+|++.|+.+|+ +..++..-..+...+|+.-.|++.+...++.+|++.++|. .++...|++++|.-+|
T Consensus 100 ~~~~~A~e~y~~lL~ddpt--~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPT--DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCcc--hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 9999999999999999995 4566666677777899999999999999999999999985 5678999999999999
Q ss_pred HHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC---chHHHHH
Q psy6461 197 AYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG---LFERARD 273 (703)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~ 273 (703)
++++-..+| + +.....|++++.-.| ++..|++
T Consensus 178 EE~ll~~P~------------------------n---------------------~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 178 EELLLIQPF------------------------N---------------------PLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred HHHHHcCCC------------------------c---------------------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998743322 1 123445555555544 5677999
Q ss_pred HHHHHHhhcCC
Q psy6461 274 IYEEAIQTVTT 284 (703)
Q Consensus 274 ~~~~~l~~~~~ 284 (703)
.|.++++..|.
T Consensus 213 yy~~alkl~~~ 223 (289)
T KOG3060|consen 213 YYERALKLNPK 223 (289)
T ss_pred HHHHHHHhChH
Confidence 99999998874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-07 Score=87.85 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=142.8
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.+-+....+|.+.+. ..+...+. .|+-+....+..+++-..|.+..+...+++..... |++..|...+.+
T Consensus 55 al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~--------g~~~~A~~~~rk 125 (257)
T COG5010 55 ALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--------GNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh--------cchHHHHHHHHH
Confidence 445566789999999 77777776 88888888999999999999999887777665443 899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+....|++.++|..++-++.+.|+.+.|+.-|.++++..| +.+.+...++-.+.-.|+.+.|+.++.++....+.+..
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 9999999999999999999999999999999999999999 56888888888888999999999999999887776655
Q ss_pred HHHH---HHHhcCCHHHHHHHHH
Q psy6461 178 DYIE---YLSSIERLDEAAVKLA 197 (703)
Q Consensus 178 ~~~~---~~~~~~~~~~A~~~~~ 197 (703)
.... .....|++.+|.++-.
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcc
Confidence 4333 3357899998877753
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-08 Score=93.36 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=79.9
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..++..|..||+|.+.|.-+++.+. +++++.|...|.+|++..|+++++|..|++.+.-... .....++..+|+
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-----~~~ta~a~~ll~ 217 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-----QQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----CcccHHHHHHHH
Confidence 4566667777777777777777776 7777777777777777777777777777766554321 123456777777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
++++.+|.++.....++.-++.+|++.+|...++..|...|.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 777777777777777777777777777777777777777663
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-07 Score=85.20 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=104.4
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 411 ARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
+...+-+....+|.+. .+ ..+...+...|+-+.+..+..++...+|.+ ..+...++..
T Consensus 52 a~~al~~~~~~~p~d~----~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----------------~~ll~~~gk~ 109 (257)
T COG5010 52 AAAALGAAVLRNPEDL----SI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-----------------RELLAAQGKN 109 (257)
T ss_pred HHHHHHHHHhcCcchH----HH-HHHHHHHHhcccccchHHHHhhhhccCccc-----------------HHHHHHHHHH
Confidence 3333333444445554 55 666666666666666666666655555553 4455455555
Q ss_pred HHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHH
Q psy6461 491 EESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARH 570 (703)
Q Consensus 491 ~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 570 (703)
..+.|++ .+|...+.++....|++ ..+|..+|-.+.+.|+++.
T Consensus 110 ~~~~g~~-----------------------------------~~A~~~~rkA~~l~p~d--~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 110 QIRNGNF-----------------------------------GEAVSVLRKAARLAPTD--WEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcch-----------------------------------HHHHHHHHHHhccCCCC--hhhhhHHHHHHHHccChhH
Confidence 5555554 66777777777777766 4567777777777777777
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 571 AMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYA 648 (703)
Q Consensus 571 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 648 (703)
|+..|.++++..|.++.+ .......+.-.|+...|+.++..+...-+.+.. +-..++......|++..|..+-.
T Consensus 153 Ar~ay~qAl~L~~~~p~~--~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 153 ARRAYRQALELAPNEPSI--ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--VRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhccCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--HHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777776666433 223333333356667777777666666554443 55566666667777777776643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-07 Score=92.26 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=124.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|....+|...+.... .+++++|+..+...+...|+|+-+|.....+..+. ++.++|.+.+++++...|+++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~--------nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA--------NKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCCCcc
Confidence 677777777765555 88999999999999999999999998888887664 788999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 186 (703)
-+|+.|++.+++.|+..+|.+.+++.+..+| .++..|..+++.+..+|+..+|...+ ...+...
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~ 438 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALA 438 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhC
Confidence 9999999999999999999999999999999 56889999999999998876655443 3444567
Q ss_pred CCHHHHHHHHHHhh
Q psy6461 187 ERLDEAAVKLAYIV 200 (703)
Q Consensus 187 ~~~~~A~~~~~~~~ 200 (703)
|++++|+..+..+.
T Consensus 439 G~~~~A~~~l~~A~ 452 (484)
T COG4783 439 GRLEQAIIFLMRAS 452 (484)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-08 Score=83.46 Aligned_cols=103 Identities=9% Similarity=0.095 Sum_probs=86.4
Q ss_pred cC-CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 26 RN-PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 26 ~~-P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
.. |.+.+....++-... .|+++.|.+.|+-.+..+|.+...|..++...... |++++|+..|.+|+..+|
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~--------g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ--------KHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHhcCC
Confidence 34 666677777776555 88999999999999999999999998888877664 888899999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhC
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRAL 136 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 136 (703)
++|......+.+++..|+.+.|++.|+.++...
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999888865
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=98.85 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQA 475 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 475 (703)
..+|.....+++++++.+.+++.++++|-.. ..|+.++-..++.++++.|.+.|.+++...|++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~----~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~------------ 552 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQL----GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN------------ 552 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccch----hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc------------
Confidence 3334444456778888888888887777776 778888777777888888888888888888774
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH
Q psy6461 476 RVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 555 (703)
...|+.....+...++. .+|...+.+|++-+-.+ ..+|
T Consensus 553 -----~eaWnNls~ayi~~~~k-----------------------------------~ra~~~l~EAlKcn~~~--w~iW 590 (777)
T KOG1128|consen 553 -----AEAWNNLSTAYIRLKKK-----------------------------------KRAFRKLKEALKCNYQH--WQIW 590 (777)
T ss_pred -----hhhhhhhhHHHHHHhhh-----------------------------------HHHHHHHHHHhhcCCCC--Ceee
Confidence 56677776666655443 67777777777776555 3577
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
.+|..+-.+.|.+++|.+.+.+.+..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHh
Confidence 77777777777777777777777654
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-07 Score=88.74 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHhCCCcch----------HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH--HHHHHHHHH
Q psy6461 530 TKLERARDLFEQCLEACPPRYA----------KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF--EMFNIYIKK 597 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~ 597 (703)
.+.+.+...|+++|..+|++.. ...|-.-|.-..+.|++.+|-..|..|+.++|.+... .+|..-...
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 3445566666666666665420 1234444444445566666666666666666654321 222233333
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 598 AAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..++|+..+|..-...+++++|. .+..++..|.+..-.++++.|.+-|++|++.
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~s--yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSS--YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666666554 2335555555555566666666666666555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.9e-06 Score=83.60 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWP 510 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~ 510 (703)
..++..+..+++.|++++|+..++..+...|++ +-++...++++...++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----------------~~~~~~~~~i~~~~nk~------------- 356 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----------------PYYLELAGDILLEANKA------------- 356 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCh-------------
Confidence 778888888999999999999999999999985 77777888887776554
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHH
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEM 590 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 590 (703)
++|.+.+++++..+|+. ..++++||+.+.+.|++.+|+.++.+.+...|++ ...
T Consensus 357 ----------------------~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d--p~~ 410 (484)
T COG4783 357 ----------------------KEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED--PNG 410 (484)
T ss_pred ----------------------HHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--chH
Confidence 99999999999999998 5799999999999999999999999999999998 467
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
|......+...|+..+ ....++..+.-.|+++.|+..+.+|.+....
T Consensus 411 w~~LAqay~~~g~~~~-------------------a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 411 WDLLAQAYAELGNRAE-------------------ALLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHHhCchHH-------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 8887877777666544 4456677777899999999999999887543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.6e-05 Score=87.62 Aligned_cols=246 Identities=9% Similarity=-0.008 Sum_probs=154.4
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC----cchHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK----VEDLATVWCEWAELEL 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~ 441 (703)
|+++.|...+++++..................++..+...|+++.|...+++++...... ......++..++.++.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 888999999999886532211111123455677888889999999999999988762111 0011234556777888
Q ss_pred HcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 442 RAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 442 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
..|++++|...+.+++........ . .....+...+.+....|
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~---~---------~~~~~~~~la~~~~~~G-------------------------- 626 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQP---Q---------QQLQCLAMLAKISLARG-------------------------- 626 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCc---h---------HHHHHHHHHHHHHHHcC--------------------------
Confidence 899999999999998876432100 0 00222233333444444
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcc-hHH--HHHH--HHHHHHHcCChHHHHHHHHHHhhccCcchH--HHHHHHH
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRY-AKT--LYLL--YAKLEEEHGLARHAMAVYERATGAVLPEEM--FEMFNIY 594 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~--~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~ 594 (703)
+.++|...++++....+... ... .... ........|+.+.|...+.......+.... ...+...
T Consensus 627 ---------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 627 ---------DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred ---------CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 45888888888876533211 000 1111 113334578899998888776653322211 1123344
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEP----TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV 658 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~ 658 (703)
.......|++++|..++++++....... .+.....++..+...|+.++|+..+.+|++...+.+
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 5555667899999999999987632211 234677788899999999999999999999876653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-07 Score=87.04 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH--- 120 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--- 120 (703)
...+.....++.-|..+|+|.+-|..++..+... |++..|...|.+|++..|+|+.++..|+..+..+.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--------~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--------GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ 207 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--------cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc
Confidence 3467777888888888888888888888887664 77888888888888888888888888888876643
Q ss_pred ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 121 KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 121 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
...+++.+|+++|+.+|+ +......++.-+.++|++.+|+..++..++..|.+.
T Consensus 208 ~ta~a~~ll~~al~~D~~--~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 208 MTAKARALLRQALALDPA--NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred ccHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 346788888888888884 345555555555578888888888888888777664
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00013 Score=77.38 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH------------HHHHHHHHhCCcccccccHHHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR------------HVFDRALRALPITQHHRVWPLYLSFV 152 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~------------~~~~~al~~~p~~~~~~~~~~~~~~~ 152 (703)
.|+.+.|.+..+-. ++..+|.+++.+..+..++|-|. +.++++.+ +|.. ... ..+-+-
T Consensus 741 iG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~ea--kvAvLA 810 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEA--KVAVLA 810 (1416)
T ss_pred eccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhh--HHHHHH
Confidence 46666666544432 46789999998887765444332 33445544 4421 222 222233
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccc
Q psy6461 153 KSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232 (703)
Q Consensus 153 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~ 232 (703)
.+.|-.++|..+|++.-+.+ .+-.++...|.+++|..+-+ ..+.+.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE-----------------------------~~DRiH 856 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAE-----------------------------TKDRIH 856 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHh-----------------------------hcccee
Confidence 35577788888888765543 44566667777777665532 111110
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHH
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAI 279 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 279 (703)
.-..++.++..+...++.+.|.+.|+++-
T Consensus 857 ------------------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 857 ------------------LRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred ------------------hhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 11468888999999999999999999843
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-08 Score=90.18 Aligned_cols=92 Identities=10% Similarity=0.148 Sum_probs=86.9
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
..++|++|...|.+||+++|+|+-++.+.+.++.+.|.++.|.+-.++||+++| ....+|..++..+..+|++++|+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999 568888888889999999999999
Q ss_pred HHHHHHhhCCCCHH
Q psy6461 164 VFRRYLKLFPEDAE 177 (703)
Q Consensus 164 ~~~~~l~~~p~~~~ 177 (703)
.|+++|.++|++..
T Consensus 171 aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 171 AYKKALELDPDNES 184 (304)
T ss_pred HHHhhhccCCCcHH
Confidence 99999999999974
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.9e-05 Score=87.14 Aligned_cols=283 Identities=12% Similarity=0.035 Sum_probs=181.7
Q ss_pred cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHH
Q psy6461 365 DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT--KVEDLATVWCEWAELELR 442 (703)
Q Consensus 365 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~ 442 (703)
.|+++.+...+++++...+... ..........++..+...|++++|+..+++++..... ...........++.++..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTW-YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 4889999999999987533211 1111234566777888999999999999999876322 111112345677888889
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
.|++++|...+++++........ ...+ ....++...+.++...
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~---~~~~------~~~~~~~~la~~~~~~---------------------------- 586 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHL---EQLP------MHEFLLRIRAQLLWEW---------------------------- 586 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc---cccc------HHHHHHHHHHHHHHHh----------------------------
Confidence 99999999999998865322100 0000 0011122233333333
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHH-----HH
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPR---YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN-----IY 594 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~ 594 (703)
|++++|+..+.+++...... .....+...+.+....|+++.|...++++....+.......+. ..
T Consensus 587 -------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 587 -------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred -------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 44589999999888763321 1134666788889999999999999999976533211000111 11
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----ChHhHHHHHH
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----TAGFWAAWKS 668 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~ 668 (703)
+......|+.+.|.....+.....+.... ...+...+..+...|+.++|...+++|+......+ .......++.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 12223367888888887776653332221 11356778888899999999999999988643221 2345666778
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Q psy6461 669 FEITHGNEDTMREMLRIKRSVQAQ 692 (703)
Q Consensus 669 ~~~~~g~~~~~~~~~~~~~~~~~~ 692 (703)
.....|+.++|...++.+-.+...
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 888899999999999777766533
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00012 Score=77.59 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=141.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|-.++|..+|+++-+. -.+-++|...|..++|.++-+-=-.++- ...|..|+..+...++
T Consensus 814 gMlEeA~~lYr~ckR~--------------DLlNKlyQs~g~w~eA~eiAE~~DRiHL------r~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY--------------DLLNKLYQSQGMWSEAFEIAETKDRIHL------RNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHHHHHH--------------HHHHHHHHhcccHHHHHHHHhhccceeh------hhhHHHHHHHHHhhcc
Confidence 6666777777765432 1223566666767766666553222222 2446666666666666
Q ss_pred HHHHHHHHHHHhc----------CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCc
Q psy6461 446 EEAALRLMARATA----------TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPY 511 (703)
Q Consensus 446 ~~~A~~~~~~a~~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~ 511 (703)
.+.|++.|+++-. -+|..+. ..-+-.+++.+|.-|++.++..|++ .+|+.|-..|
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e-------~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f---- 942 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIE-------QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF---- 942 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHH-------HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh----
Confidence 7777777766421 1111100 0001112456677777777777766 2222221111
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHh------hccCcc
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERAT------GAVLPE 585 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------~~~p~~ 585 (703)
....-..-.|+.++|-++-++ ..+ ..+...+|+.|...|+.-+|+..|.||- .+...+
T Consensus 943 ---------s~VrI~C~qGk~~kAa~iA~e-----sgd--~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn 1006 (1416)
T KOG3617|consen 943 ---------SMVRIKCIQGKTDKAARIAEE-----SGD--KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN 1006 (1416)
T ss_pred ---------hheeeEeeccCchHHHHHHHh-----ccc--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000124555666554433 223 3478899999999999999999888763 222222
Q ss_pred h-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH---------HHHhcccC
Q psy6461 586 E-MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY---------AHCSQICD 655 (703)
Q Consensus 586 ~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~---------~~a~~~~~ 655 (703)
+ ...+|+..+.. ...+.-.|..+|+. .|.+. -.-..+|.+.|.+.+|..+- +-.-+-.+
T Consensus 1007 d~~d~L~nlal~s--~~~d~v~aArYyEe----~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1007 DMKDRLANLALMS--GGSDLVSAARYYEE----LGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred CHHHHHHHHHhhc--CchhHHHHHHHHHH----cchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 1 12233321111 01122222333332 12111 11122344556665555432 11111235
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 656 PRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
++.++.+.+.-++|-..+.++++|..++-++|+.+.
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666899999999999999999999999988888654
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00036 Score=67.10 Aligned_cols=434 Identities=11% Similarity=0.066 Sum_probs=225.2
Q ss_pred hhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMH---KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.++..|+.+++-.+.... ++..+|+.+ +++..|++++|..+|.-+.+... .+..+|..++.+..=.|.+.+|.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~--C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAH--CYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHH--HHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHH
Confidence 568888888887765532 355777654 55578999999999998777433 45778877766544456677776
Q ss_pred HHHHHHHhhCCCCHH---HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHH
Q psy6461 163 RVFRRYLKLFPEDAE---DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAI 239 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 239 (703)
.+-.+ .|.++- .+..+..+.++-++-....+.+-
T Consensus 112 ~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~Lq--------------------------------------- 148 (557)
T KOG3785|consen 112 SIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ--------------------------------------- 148 (557)
T ss_pred HHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh---------------------------------------
Confidence 65444 355542 23444455555444333333221
Q ss_pred HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCc
Q psy6461 240 IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEE 319 (703)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 319 (703)
+..+-...++.+...+..+.+|+++|++++...|.... ..+|.+.-.+.....+..
T Consensus 149 ----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a-lNVy~ALCyyKlDYydvs------------- 204 (557)
T KOG3785|consen 149 ----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA-LNVYMALCYYKLDYYDVS------------- 204 (557)
T ss_pred ----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-hHHHHHHHHHhcchhhhH-------------
Confidence 11133456777777788899999999999987664321 122221111111111100
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh----hhcCCchhHHHHHHHHHHhcCCCccCCchhHHH
Q psy6461 320 DDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR----LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLW 395 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~----~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 395 (703)
.++++- -+++.|++..+....+- ++.|...+ +......+..+. .
T Consensus 205 ------------qevl~v--------YL~q~pdStiA~NLkacn~fRl~ngr~ae--~E~k~ladN~~~-----~----- 252 (557)
T KOG3785|consen 205 ------------QEVLKV--------YLRQFPDSTIAKNLKACNLFRLINGRTAE--DEKKELADNIDQ-----E----- 252 (557)
T ss_pred ------------HHHHHH--------HHHhCCCcHHHHHHHHHHHhhhhccchhH--HHHHHHHhcccc-----c-----
Confidence 001100 15566666555433321 22343321 111121111110 0
Q ss_pred HHHHHHHHHc-----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 396 IEFGKFYEVN-----DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 396 ~~~a~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
+-.+....++ .+-+.|.+++-..+++-| +....++-.++++++..+|..+.+. .+|..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP-------EARlNL~iYyL~q~dVqeA~~L~Kd---l~Ptt------- 315 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP-------EARLNLIIYYLNQNDVQEAISLCKD---LDPTT------- 315 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh-------HhhhhheeeecccccHHHHHHHHhh---cCCCC-------
Confidence 1112222222 123566666666666655 5566777777777788877777654 44431
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCCh-------hHHHhHhhcC-------CCCchHHHHHHHHHHHHHHhCCCChhHHH
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTF-------KAYEKGIALF-------KWPYIFDIWNTYLTKFLSRYGGTKLERAR 536 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~al~~~-------~~~~~~~~~~~y~~~~~~~~~~~~~~~A~ 536 (703)
+.-+..-+-...+.|+- +.-++-+... ..-+-.....+|. .+.. ++|...
T Consensus 316 ----------P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f-FL~~-----qFddVl 379 (557)
T KOG3785|consen 316 ----------PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF-FLSF-----QFDDVL 379 (557)
T ss_pred ----------hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH-HHHH-----HHHHHH
Confidence 33333334343333332 1111111100 0001222233333 1122 247776
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHH-HHHHhcCchHHHHHHHHHH
Q psy6461 537 DLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIK-KAAEIYGIPKTRQIYERAI 615 (703)
Q Consensus 537 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al 615 (703)
.++...-...-++ -...+++++.....|++.+|.++|-+.....-.+. .++..++. .++..+...-|- +..|
T Consensus 380 ~YlnSi~sYF~Nd--D~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~--~~Y~s~LArCyi~nkkP~lAW---~~~l 452 (557)
T KOG3785|consen 380 TYLNSIESYFTND--DDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK--ILYKSMLARCYIRNKKPQLAW---DMML 452 (557)
T ss_pred HHHHHHHHHhcCc--chhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh--HHHHHHHHHHHHhcCCchHHH---HHHH
Confidence 6666554555544 24788999999999999999999987765443331 23443333 334566666554 4445
Q ss_pred HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHH
Q psy6461 616 ESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAA 665 (703)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 665 (703)
+.+..+....+.--.|+-..+.|++==|-+.|.- +++.+|. +.-|+-
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~-lE~lDP~--pEnWeG 499 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDE-LEILDPT--PENWEG 499 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHccCCC--ccccCC
Confidence 5544332222333445566677776555555553 4555664 556653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=93.27 Aligned_cols=156 Identities=10% Similarity=0.061 Sum_probs=123.5
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh------cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK------NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+.++....-|.+.++|-.+.+-.. .++..+|+.+|++|++.+|+....|..++..............++...+.
T Consensus 325 e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 325 MQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344455667899999999876543 34588999999999999999998888765543222111111123466777
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 93 NTFERSLVF--MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 93 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
...++++.. +|.++.++..++......|++++|...|++|+..+|. ...|..++.++...|++++|+..|++++.
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888887775 7888899999999888999999999999999999993 46788889999999999999999999999
Q ss_pred hCCCCHH
Q psy6461 171 LFPEDAE 177 (703)
Q Consensus 171 ~~p~~~~ 177 (703)
++|..+.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9999875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-07 Score=92.52 Aligned_cols=93 Identities=10% Similarity=0.191 Sum_probs=69.1
Q ss_pred HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 38 IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 38 ~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+.... .++++.|+..|+++++.+|.+..+|..++..+... |++++|...+++++..+|+++.+|..+|.++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--------g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--------GNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44333 67777777777777777777777777777666543 6777777777777777777777777777777
Q ss_pred HhccChHHHHHHHHHHHHhCCc
Q psy6461 117 MDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~ 138 (703)
...|++++|...|+++++..|.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777777774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-06 Score=83.25 Aligned_cols=249 Identities=14% Similarity=0.097 Sum_probs=102.2
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR 442 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 442 (703)
++.|++..++..++ +....+ ...........+.+...|+++..+.-....- +|.. .....++.++..
T Consensus 12 fy~G~Y~~~i~e~~--~~~~~~----~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l-----~av~~la~y~~~ 78 (290)
T PF04733_consen 12 FYLGNYQQCINEAS--LKSFSP----ENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL-----QAVRLLAEYLSS 78 (290)
T ss_dssp HCTT-HHHHCHHHH--CHTSTC----HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC-----HHHHHHHHHHCT
T ss_pred HHhhhHHHHHHHhh--ccCCCc----hhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH-----HHHHHHHHHHhC
Confidence 44477777776555 222222 1233445555677777887766554433211 2222 445555655544
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
.++.+.+..-++..+...... .++.+...-+.++...|++ +.|++........+...-.+..
T Consensus 79 ~~~~e~~l~~l~~~~~~~~~~---------------~~~~~~~~~A~i~~~~~~~---~~AL~~l~~~~~lE~~al~Vqi 140 (290)
T PF04733_consen 79 PSDKESALEELKELLADQAGE---------------SNEIVQLLAATILFHEGDY---EEALKLLHKGGSLELLALAVQI 140 (290)
T ss_dssp STTHHCHHHHHHHCCCTS------------------CHHHHHHHHHHHHCCCCHH---HHHHCCCTTTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccc---------------ccHHHHHHHHHHHHHcCCH---HHHHHHHHccCcccHHHHHHHH
Confidence 445666666665544332210 0122223333344444443 4555444322222222211111
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY 602 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 602 (703)
++. .+++|.|.+.++++-+.+.++....+...|..+..-.+++.+|.-+|+...+.++.+ +.+..+.+...+..|
T Consensus 141 ~L~---~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 141 LLK---MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHH---TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHHHHHHHHCT
T ss_pred HHH---cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhC
Confidence 111 334455555555544444443211111111111111123455555555544444333 233444444444455
Q ss_pred CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q psy6461 603 GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI-DRARAIYAH 649 (703)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~ 649 (703)
++++|..++++++..+|.++. .+...+-+....|+. +.+.+.+.+
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d--~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPD--TLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHH--HHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHhCCChhHHHHHHHH
Confidence 555555555555555555443 344444444444544 333334433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=86.74 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=92.6
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.+++.+|+..|.+||+.+|.+..+....+..+.+. |.++.|...+++||.++|....+|..++..+..+|++
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L--------g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL--------GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh--------cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 58999999999999999999999999998887664 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
++|...|.+||.++|. +...|..+-..+...+..
T Consensus 166 ~~A~~aykKaLeldP~--Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD--NESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHHhhhccCCC--cHHHHHHHHHHHHHhcCC
Confidence 9999999999999995 455555554444444443
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0024 Score=69.23 Aligned_cols=183 Identities=9% Similarity=0.047 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
++++.+|.+..++.++..|+.+-+-..-+-...+.|+.++|..+++ ++...+. ++......+-.++.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCC-CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4789999999999999999999888888888999999999996666 5554443 3455556667788889999999999
Q ss_pred HHHHHhhCCCCHHHHHHH---HHhcCCHH----HHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcc--cccccc
Q psy6461 165 FRRYLKLFPEDAEDYIEY---LSSIERLD----EAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPD--KIRSLN 235 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~---~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~--~~~~~~ 235 (703)
|+++++.+|+ .+...++ +.+.+.|. -|+++|+.. ++..+-+|....-++...+. .....-
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~----------pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNF----------PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999 5544333 45555553 466666644 44456677776555543222 211101
Q ss_pred ----HHHHHHhHhhhh-ccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 236 ----VDAIIRGGLRRY-TDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 236 ----~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
++...+..+..- +-....-...+-.+...+|++++|..++..-+.
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la 218 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLA 218 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 111122222221 111222234455666788999999999865444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-06 Score=80.55 Aligned_cols=170 Identities=14% Similarity=0.116 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
++.+.+.-|.++...|+++.|.+++.++ .+. +.......++++.++++.|.+.++++.+.+.+.+
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~------ 165 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI------ 165 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH------
Confidence 3445555567777889999999888765 333 6666777888999999999999999988876621
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
-.++...|+.+.. +..++.+|..+|+......|..
T Consensus 166 ---------l~qLa~awv~l~~-----------------------------------g~e~~~~A~y~f~El~~~~~~t- 200 (290)
T PF04733_consen 166 ---------LTQLAEAWVNLAT-----------------------------------GGEKYQDAFYIFEELSDKFGST- 200 (290)
T ss_dssp ---------HHHHHHHHHHHHH-----------------------------------TTTCCCHHHHHHHHHHCCS--S-
T ss_pred ---------HHHHHHHHHHHHh-----------------------------------CchhHHHHHHHHHHHHhccCCC-
Confidence 0122222222211 2345799999999988877766
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhCCCcch
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI-PKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~ 623 (703)
+.+....+.+.+..|++++|.++++.++...|.+. .+....+......|+. +.+.....+.-..+|+++.
T Consensus 201 -~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~--d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 201 -PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP--DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH--HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 67888999999999999999999999999999884 3444556666566666 6677888888888999764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=71.11 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy6461 34 WLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDY 112 (703)
Q Consensus 34 w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 112 (703)
|..++..+. .+++++|...++++++..|.+...|..++...... +++++|...|++++...|.++..|..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--------GKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 444454444 56666666666666666666666665555554433 556666666666666666666666666
Q ss_pred HHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 113 GRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 113 ~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
+.++...|+++.|...+.++++..|
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCC
Confidence 6666666666666666666665544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.6e-06 Score=82.50 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccC----CCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHH
Q psy6461 49 INTIYERSLKELPGSYKLWYNYLKLRRKQVKGK----VITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQ 124 (703)
Q Consensus 49 a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 124 (703)
-...|++.++.+|+|++.|+.++.+........ .....-.+.-..+|++||+.+|++..+++.|.....+..+.++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 346789999999999999999999865443211 1111224556789999999999999999999999998889999
Q ss_pred HHHHHHHHHHhCCcccccccHHHHHHHHHhc---CChHHHHHHHHHHHhh
Q psy6461 125 TRHVFDRALRALPITQHHRVWPLYLSFVKSH---AVPETAVRVFRRYLKL 171 (703)
Q Consensus 125 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~ 171 (703)
..+.+++++..+| +...+|..|+.+.... ..++..+.+|.++++.
T Consensus 84 l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 84 LAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999999 5699999999997652 2457778888887754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=73.86 Aligned_cols=100 Identities=15% Similarity=-0.006 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
.+....+|..+...|++++|.++|+-....+|.+ ..-|.++...+...|++.+|...|.+|+...|++|. .....+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~--~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~--~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS--FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ--APWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch--HHHHHH
Confidence 3567788888889999999999999999999987 567778888888889999999999999999999887 688888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 632 EMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
.++...|+.+.|++.|+.|+..+.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999998863
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-06 Score=73.36 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHHHhcCchH
Q psy6461 529 GTKLERARDLFEQCLEACPPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~ 606 (703)
.++.+.+...+++.++..|+. ......+.++......|++++|...|+.++...|++. ...........+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456688888999999999987 3456888899999999999999999999999876543 22233344555667889999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
|...++.. ...+ ....++...++++.+.|++++|+..|++|+
T Consensus 104 Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99888662 2222 233477888999999999999999999875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-06 Score=76.99 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=84.0
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.....+..++..+. .|++++|...|+++++..|.. ...|..++..... .|++++|...|++++...|+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS--------NGEHDKALEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCcc
Confidence 44445566666666 788888888888888776654 3456555555443 27778888888888888888
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
++..+..++.++...|+...+..-++.++. .+++|.+.+++++..+|++......++.
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~----------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEA----------------------LFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHH----------------------HHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 777777777777777776655554444432 1466778888888888887544444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.5e-06 Score=82.08 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=134.2
Q ss_pred HhcCCCCh---HHH--HHHHHHhh------cCchhHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhc--ccCCCCchh
Q psy6461 24 ILRNPFSV---KHW--LRYIEHKK------NAPKAIINTIYERSL---KELPGSYKLWYNYLKLRRKQV--KGKVITDPS 87 (703)
Q Consensus 24 l~~~P~~~---~~w--~~~~~~~~------~~~~~~a~~~~e~al---~~~P~~~~~w~~~~~~~~~~~--~~~~~~~~~ 87 (703)
...-|.+. ++| -.|.+-.. ..+.++|..+|.+|+ +.+|.....+..++..+.... +... ...+
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~ 319 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELA 319 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHH
Confidence 34447787 888 44443222 356788999999999 999988888777776665442 2222 3456
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
..+|..+-++|+..+|.++.+....|......++++.|..+|++|+..+| +...+|...+-...-.|+.++|+..+++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P--n~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST--DIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78899999999999999999999999988888999999999999999999 5688898888888889999999999999
Q ss_pred HHhhCCCCHHH-----HHHHHHhcCCHHHHHHHHHH
Q psy6461 168 YLKLFPEDAED-----YIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 168 ~l~~~p~~~~~-----~~~~~~~~~~~~~A~~~~~~ 198 (703)
+++++|.-..+ |+.+|. ...+++|+++|-+
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 99999987653 343332 4456778877743
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-06 Score=86.34 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
+..-|...+..|++++|+..|+++++.+|++ ..+|..++.++...|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----------------~~a~~~~a~~~~~~g~~--------------- 52 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----------------AELYADRAQANIKLGNF--------------- 52 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH---------------
Confidence 3445667778999999999999999999985 78888888888777665
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHH
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN 592 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 592 (703)
++|...+++++.++|++ ..+|..+|.++...|++++|+..|++++...|.+..+..|.
T Consensus 53 --------------------~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 53 --------------------TEAVADANKAIELDPSL--AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred --------------------HHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999998 67899999999999999999999999999999998777777
Q ss_pred HHHHHHH
Q psy6461 593 IYIKKAA 599 (703)
Q Consensus 593 ~~~~~~~ 599 (703)
..+...+
T Consensus 111 ~~~~~kl 117 (356)
T PLN03088 111 KECDEKI 117 (356)
T ss_pred HHHHHHH
Confidence 6664444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.8e-07 Score=66.94 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHhCC
Q psy6461 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH-KITQTRHVFDRALRALP 137 (703)
Q Consensus 63 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 137 (703)
++..|...+...... |++++|...|+++++.+|+++.+|..++.++...| ++++|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~--------~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--------GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--------THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445566666555443 66666666666666666666666666666666666 56666666666666665
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-06 Score=76.95 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH-------hc
Q psy6461 86 PSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK-------SH 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------~~ 155 (703)
|++++|...|++++...|++ +.+|..++.++...|++++|+..|++++...|. ....|..++.++. ..
T Consensus 49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF--LPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhhHHHHHc
Confidence 45555555555555554432 235555555555556666666666666655552 2334444444444 34
Q ss_pred CCh-------HHHHHHHHHHHhhCCCCHHHHHHHHHhcCC
Q psy6461 156 AVP-------ETAVRVFRRYLKLFPEDAEDYIEYLSSIER 188 (703)
Q Consensus 156 ~~~-------~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 188 (703)
|++ ++|...|++++..+|.+......++...|+
T Consensus 127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 443 356667777777777766544444444443
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-07 Score=86.45 Aligned_cols=133 Identities=19% Similarity=0.271 Sum_probs=106.1
Q ss_pred ccCCCchhhHHHHhcCCCChHHHHHHHHHhh-cC-------------------c---hhHHHHHHHHHHhhCCCCHHHHH
Q psy6461 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NA-------------------P---KAIINTIYERSLKELPGSYKLWY 68 (703)
Q Consensus 12 ~~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~-------------------~---~~~a~~~~e~al~~~P~~~~~w~ 68 (703)
.+.+.|..||..|...-.....+..|+.++. .. | ..+..-.|.|+...+|+++.+|.
T Consensus 32 ~IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~ 111 (435)
T COG5191 32 RIVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWS 111 (435)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHH
Confidence 4556678899999877778889999988775 10 0 12333456788889999999999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCcccccccHHH
Q psy6461 69 NYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPITQHHRVWPL 147 (703)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 147 (703)
.|+.+.... +-+.+...+|-.+++.+|.+..+|+--+.+... .++++.+|.+|.++|+.+| ..+.+|..
T Consensus 112 ~y~~Y~~k~--------k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~--~~p~iw~e 181 (435)
T COG5191 112 QYAAYVIKK--------KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS--RSPRIWIE 181 (435)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC--CCchHHHH
Confidence 999886654 678889999999999999999999886666544 6899999999999999999 45899999
Q ss_pred HHHHHHh
Q psy6461 148 YLSFVKS 154 (703)
Q Consensus 148 ~~~~~~~ 154 (703)
|.+++..
T Consensus 182 yfr~El~ 188 (435)
T COG5191 182 YFRMELM 188 (435)
T ss_pred HHHHHHH
Confidence 9988754
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=69.13 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...++++++..|.++.+|..++.++...+++++|...|++++...|. ....|..++.++...|+++.|...+
T Consensus 14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHHHHhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999884 4578888888888999999999999
Q ss_pred HHHHhhCCC
Q psy6461 166 RRYLKLFPE 174 (703)
Q Consensus 166 ~~~l~~~p~ 174 (703)
.+++..+|.
T Consensus 92 ~~~~~~~~~ 100 (100)
T cd00189 92 EKALELDPN 100 (100)
T ss_pred HHHHccCCC
Confidence 999888773
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-07 Score=68.37 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPA 461 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p 461 (703)
.+.+|..+|..+...|++++|+..|+++++.+|+++ .+|..+|.++...| ++++|+..++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 356899999999999999999999999999999987 89999999999999 79999999999999887
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.4e-06 Score=70.11 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A 161 (703)
|++++|...|++++...|++ +.++..++.++...|+++.|...|++++...|.+. .+.+|...+.++...|+++.|
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 95 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKA 95 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHH
Confidence 88999999999999999876 57888999999999999999999999999988532 256788888999899999999
Q ss_pred HHHHHHHHhhCCCCHH
Q psy6461 162 VRVFRRYLKLFPEDAE 177 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~ 177 (703)
+..|++++...|++..
T Consensus 96 ~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 96 KATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHCcCChh
Confidence 9999999999999864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=71.18 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=68.5
Q ss_pred cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFL 116 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~ 116 (703)
.++...+...+++.++.+|++ ...++.++..... .|++++|...|+.++...|+. +.+++.++.++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~--------~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE--------QGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 566666666677777777766 2333333333332 266777777777777665443 24556666677
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
..+|++++|...++.. ...+ ..+..+...+.++...|+.++|+..|+++|
T Consensus 96 ~~~~~~d~Al~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQYDEALATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHcCCHHHHHHHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7777777777776542 1111 234455556666666777777777766653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.41 E-value=6e-06 Score=70.28 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=86.6
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC--
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM-- 105 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 105 (703)
+.+...+.... +|++++|...|+++++.+|++ ...+..++...... |+++.|...|++++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ--------GKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHHCCCCCc
Confidence 56677777777 999999999999999999987 45666677666553 88999999999999998885
Q ss_pred -HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc
Q psy6461 106 -PRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139 (703)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 139 (703)
+.++..++.++...|+.++|...+++++...|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999953
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00093 Score=65.35 Aligned_cols=253 Identities=20% Similarity=0.162 Sum_probs=171.3
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH--HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE--VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
+.+|+++.|++-|+-++.. |. ....-..|-+++ ..|+.+.|+.+-+++-..-|.-+ -.|.....-.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d--PE------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~----WA~~AtLe~r 198 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD--PE------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP----WAARATLEAR 198 (531)
T ss_pred HhcCchHHHHHHHHHHhcC--hH------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc----hHHHHHHHHH
Confidence 4569999999999988763 31 112222233333 68999999999999988888765 4455555555
Q ss_pred HHcCCHHHHHHHHHHHhcC---CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 441 LRAGQEEAALRLMARATAT---PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
+..|+++.|+++++..... .++. .-...+-++.. ++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~-------------------aeR~rAvLLtA--------kA-------------- 237 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDV-------------------AERSRAVLLTA--------KA-------------- 237 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhh-------------------HHHHHHHHHHH--------HH--------------
Confidence 6789999999999876542 2221 00011111100 00
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK 597 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 597 (703)
... -..+...|+..-..++++.|+- ...-+.-+..+.+.|+..++-+++|.+.+..|. +.||..|...
T Consensus 238 ------~s~-ldadp~~Ar~~A~~a~KL~pdl--vPaav~AAralf~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~a 305 (531)
T COG3898 238 ------MSL-LDADPASARDDALEANKLAPDL--VPAAVVAARALFRDGNLRKGSKILETAWKAEPH---PDIALLYVRA 305 (531)
T ss_pred ------HHH-hcCChHHHHHHHHHHhhcCCcc--chHHHHHHHHHHhccchhhhhhHHHHHHhcCCC---hHHHHHHHHh
Confidence 000 0234578999999999999987 346677788888999999999999999999997 4688888765
Q ss_pred HHHhcCchHHHHHHHHH---HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHc-
Q psy6461 598 AAEIYGIPKTRQIYERA---IESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITH- 673 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 673 (703)
.. |+ .+..-.+++ -...|++.. ..+..+..-..-|++..|+.--+.+.... | -..++..+++++..+
T Consensus 306 r~--gd--ta~dRlkRa~~L~slk~nnae--s~~~va~aAlda~e~~~ARa~Aeaa~r~~-p--res~~lLlAdIeeAet 376 (531)
T COG3898 306 RS--GD--TALDRLKRAKKLESLKPNNAE--SSLAVAEAALDAGEFSAARAKAEAAAREA-P--RESAYLLLADIEEAET 376 (531)
T ss_pred cC--CC--cHHHHHHHHHHHHhcCccchH--HHHHHHHHHHhccchHHHHHHHHHHhhhC-c--hhhHHHHHHHHHhhcc
Confidence 42 23 333333333 234677654 55666666667899999999888887773 4 367888999999888
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy6461 674 GNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 674 g~~~~~~~~~~~~~~~~~ 691 (703)
|+-.+++.++ ++.|..
T Consensus 377 GDqg~vR~wl--Aqav~A 392 (531)
T COG3898 377 GDQGKVRQWL--AQAVKA 392 (531)
T ss_pred CchHHHHHHH--HHHhcC
Confidence 9988888887 666543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-05 Score=71.87 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.....+..+|..+...|++++|...|+++++..|+.. ....++..++.++.+.|++++|+..+.+++...|++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence 4566789999999999999999999999998866543 123689999999999999999999999999999985
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA 545 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~ 545 (703)
...+..++.++...|+. ..+++++.. +++|.+++++++..
T Consensus 106 -----------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~-------------------------~~~A~~~~~~a~~~ 149 (172)
T PRK02603 106 -----------PSALNNIAVIYHKRGEKAEEAGDQDEAEAL-------------------------FDKAAEYWKQAIRL 149 (172)
T ss_pred -----------HHHHHHHHHHHHHcCChHhHhhCHHHHHHH-------------------------HHHHHHHHHHHHhh
Confidence 66777778777777664 112222211 37788888888888
Q ss_pred CCCc
Q psy6461 546 CPPR 549 (703)
Q Consensus 546 ~p~~ 549 (703)
+|++
T Consensus 150 ~p~~ 153 (172)
T PRK02603 150 APNN 153 (172)
T ss_pred Cchh
Confidence 8876
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-06 Score=65.55 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 397 EFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 397 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+|..+...|++++|+..|+++++.+|.++ .+|..++.++.+.|++++|+..|+++++..|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP----EAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999987 999999999999999999999999999999974
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=72.62 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.+...+|.++...|++++|+.+|++.....-.+. ......++..+-+++..|++..|...+++....+|...+.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s--- 232 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS--- 232 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc---
Confidence 4567778888999999999999999877532221 1223556677777888999999999999999999864210
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
. ...+....+... ..|+...|..++..|..-...+-|..-+
T Consensus 233 -~--------E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w~~~~ 273 (282)
T PF14938_consen 233 -R--------EYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNWKTKM 273 (282)
T ss_dssp -H--------HHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred -H--------HHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence 0 122333322222 3345555666666665444455555433
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.001 Score=62.56 Aligned_cols=161 Identities=14% Similarity=0.021 Sum_probs=111.7
Q ss_pred hcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 25 LRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 25 ~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
+.+|.+--....++-.+- ..++..|-..|+.....+|.-.+.-.-+++.+-.. +.+.+|.++.... .
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A--------~i~ADALrV~~~~----~ 105 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA--------CIYADALRVAFLL----L 105 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh--------cccHHHHHHHHHh----c
Confidence 578888777777777666 88899999999999999998887776666554332 4455666655443 3
Q ss_pred CCHHHHHHHHH----HHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-H
Q psy6461 104 KMPRIWLDYGR----FLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-D 178 (703)
Q Consensus 104 ~~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~ 178 (703)
+++.+...-.+ +..+.+++..++.+.++ .|..+........+.+..+.|+++.|.+-|+.+++...-.+- +
T Consensus 106 D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllA 181 (459)
T KOG4340|consen 106 DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLA 181 (459)
T ss_pred CCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhH
Confidence 33444433333 33456788888888775 564334455555666666889999999999999987654443 3
Q ss_pred HH-HH-HHhcCCHHHHHHHHHHhhc
Q psy6461 179 YI-EY-LSSIERLDEAAVKLAYIVN 201 (703)
Q Consensus 179 ~~-~~-~~~~~~~~~A~~~~~~~~~ 201 (703)
|. .+ ..+.++++.|.+..+++++
T Consensus 182 YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 182 YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 32 22 2578999999999998874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-05 Score=72.51 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=91.9
Q ss_pred CCchhhHHHHhcCCCC--hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhH
Q psy6461 15 EEDLPYEEEILRNPFS--VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSY 88 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~--~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~ 88 (703)
.....+.+.++.++.+ ...|..++.... .+++++|...|++++...|++. ..|..++..+... |++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~--------g~~ 88 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN--------GEH 88 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc--------CCH
Confidence 3334555555667766 577788888887 8999999999999999987643 4777777766543 899
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------hccChH-------HHHHHHHHHHHhCCc
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLM-------DQHKIT-------QTRHVFDRALRALPI 138 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~al~~~p~ 138 (703)
++|...|++++...|.....|..++.++. ..|+++ +|..+|++++..+|.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999888 666655 667777778887884
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0002 Score=69.02 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc-ccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH-RVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
.++..+...+.-....|++++|...|++.+...|.+... .....++..+.+.++++.|+..+++.++.+|+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 356777778888888999999999999999999964221 12234455555889999999999999999999864
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=67.58 Aligned_cols=79 Identities=14% Similarity=0.224 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHK--MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
|+++.|...|+++++..|. +...|..++.++...|++++|..++++ ++..| .+......+++++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555555553 234455555555555555555555555 44444 223333344555555555555555
Q ss_pred HHHH
Q psy6461 164 VFRR 167 (703)
Q Consensus 164 ~~~~ 167 (703)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=64.41 Aligned_cols=52 Identities=27% Similarity=0.478 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
|++++|...|+++++..|+++.+|..+|.++..+|++++|..+|+++++..|
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4555555555555555555555555555555555555555555555555555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00021 Score=67.09 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
++..+...|.-.+..|++++|...|++.+...|.+. .+.+...++..+...|+++.|+..|++.++.+|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 456677778888899999999999999999988642 245556666666788999999999999999999886
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-07 Score=83.50 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=85.6
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..|.+..-..|+|+..|..|+.+.. .+.+.+..++|..+++.+|.++++|+-.+.++... .++++.++++|.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-------~ani~s~Ra~f~ 166 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-------IANIESSRAMFL 166 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-------hccHHHHHHHHH
Confidence 4677888889999999999999999 88999999999999999999999999888776654 478999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~ 118 (703)
++++.+|++|.+|..|.+++..
T Consensus 167 ~glR~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 167 KGLRMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred hhhccCCCCchHHHHHHHHHHH
Confidence 9999999999999999998765
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.008 Score=63.53 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
.|-..+.-|...|+++.|..+|.++ .++..-+.+|.+.|+++.|.++-.++...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 3445577777899999999999875 33455567788999999999988876543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.3e-05 Score=82.56 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=112.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------cChHH
Q psy6461 53 YERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ--------HKITQ 124 (703)
Q Consensus 53 ~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~ 124 (703)
.+++...-|.+.+.|..|++-.... .. ...++...|+.+|++|++.+|++..+|..++.++... .+...
T Consensus 326 ~~~~~~~~~~~~~Ay~~~lrg~~~~-~~--~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 326 QERLQQGLPHQGAALTLFYQAHHYL-NS--GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 4455577889999998888764321 11 1235688999999999999999998888876655332 23455
Q ss_pred HHHHHHHHHHh--CCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 125 TRHVFDRALRA--LPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 125 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
+....++++.. +| ..+.++..++......|++++|...|++++..+|. .
T Consensus 403 a~~~~~~a~al~~~~--~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~-------------------------- 453 (517)
T PRK10153 403 LSTELDNIVALPELN--VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-W-------------------------- 453 (517)
T ss_pred HHHHHHHhhhcccCc--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-H--------------------------
Confidence 66666666664 44 33566777766666778888888888888887763 2
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
..|..+|.++...|++++|...|++++...
T Consensus 454 --------------------------------------------------~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 454 --------------------------------------------------LNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred --------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 468888999999999999999999999998
Q ss_pred CCccc
Q psy6461 283 TTVRD 287 (703)
Q Consensus 283 ~~~~~ 287 (703)
|....
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 87664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00027 Score=68.01 Aligned_cols=206 Identities=8% Similarity=-0.102 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..++..|.-....|++++|+..|++++...|.++ ......+.++..+.+.+++++|+..+++.++..|++-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~------ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP------ 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC------
Confidence 455667778888889999999999999999999875 2234567888889999999999999999999999861
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
+.+.+++..+......+.. .+..+...+ ...........|...|++.++..|++.
T Consensus 104 --------~~~~a~Y~~g~~~~~~~~~-----~~~~~~~~~------------~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 104 --------NIDYVLYMRGLTNMALDDS-----ALQGFFGVD------------RSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred --------chHHHHHHHHHhhhhcchh-----hhhhccCCC------------ccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 1234444444332222210 000000000 000001112567789999999999862
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH-HHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR-QMCLK 629 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~ 629 (703)
+..- |...+..+......+ ++ .-+.++.+.|.+..|..-|+.+++..|+.+.. +....
T Consensus 159 ----ya~~------------A~~rl~~l~~~la~~---e~--~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 159 ----YTTD------------ATKRLVFLKDRLAKY---EL--SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred ----hHHH------------HHHHHHHHHHHHHHH---HH--HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 1111 111111111111110 11 12344555677888888888888888877753 35666
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAH 649 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~ 649 (703)
.+..+...|..++|..+...
T Consensus 218 l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 218 MENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCChHHHHHHHHH
Confidence 67778888988888877653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=64.32 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLS 150 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 150 (703)
|++++|...|++++..+|+++.+++.++.++...|++++|+.++++++...|+ ++.+|..++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD--NPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT--HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--HHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999994 3566655543
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00013 Score=68.54 Aligned_cols=194 Identities=15% Similarity=0.030 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..+...|..+...|++.+|+..|++++...|.++ -.....+.++..+.+.|++++|+..+++.+...|++-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------ 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------
Confidence 355677778888899999999999999999988775 3347788889999999999999999999999999851
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
..+.+++..+........ ..+ ......+...+|...|+..++..|++.
T Consensus 77 --------~~~~A~Y~~g~~~~~~~~-----~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 77 --------KADYALYMLGLSYYKQIP-----GIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp --------THHHHHHHHHHHHHHHHH-----HHH--------------------TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred --------chhhHHHHHHHHHHHhCc-----cch-------------------hcccChHHHHHHHHHHHHHHHHCcCch
Confidence 113333333332221100 000 000012234688889999999999872
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH-HHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR-QMCLK 629 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~ 629 (703)
+. .+|...+..+....-.+ .+ ..+.++.+.|.+..|..-++.+++..|+.+.. +.+..
T Consensus 125 ----y~------------~~A~~~l~~l~~~la~~---e~--~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~ 183 (203)
T PF13525_consen 125 ----YA------------EEAKKRLAELRNRLAEH---EL--YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALAR 183 (203)
T ss_dssp ----TH------------HHHHHHHHHHHHHHHHH---HH--HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred ----HH------------HHHHHHHHHHHHHHHHH---HH--HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 11 11111111111111110 11 12344445667777777777777777776643 35566
Q ss_pred HHHHHHHcCCHHHHH
Q psy6461 630 FAEMETKLGEIDRAR 644 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~ 644 (703)
++..+.+.|..+.|.
T Consensus 184 l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 184 LAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHTT-HHHHH
T ss_pred HHHHHHHhCChHHHH
Confidence 666777777766443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-05 Score=79.83 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=84.3
Q ss_pred HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 38 IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 38 ~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+.+.. .++++.|+.+|++..+.+|+ .+..+++..... ++-.+|.+++.++++..|.+..++...+.++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~--------~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM--------NEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc--------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444 67788888888888887775 334445544321 4456778888888888888888888888888
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
++.++++.|..+.+++.+..|. .-..|..++.+|...|+++.|+..+..
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888888888888888884 467788888888888888877766654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=67.00 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=65.4
Q ss_pred ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHhcCCHHHHHHH
Q psy6461 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED---YIEYLSSIERLDEAAVK 195 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~A~~~ 195 (703)
+|+++.|..+|++++...|.+.....|..++.++...|++++|+.++++ .+.+|.+... +...+...|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999999532566788889999999999999999999 8788877553 23556899999999999
Q ss_pred HHHh
Q psy6461 196 LAYI 199 (703)
Q Consensus 196 ~~~~ 199 (703)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9864
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=4e-06 Score=63.08 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=58.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGR 114 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 114 (703)
.|++++|...|+++++.+|++.++|..++.++... |++++|...+++++...|+++.+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ--------GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT--------T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 68999999999999999999999999999998875 99999999999999999999888877665
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=63.86 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=118.2
Q ss_pred chhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhccChH
Q psy6461 45 PKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF-MHKMPRIWLDYGRFLMDQHKIT 123 (703)
Q Consensus 45 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~ 123 (703)
|+++......+.+...|...+- +.+++...+ .|++.+|...|++++.- ..+++.+.+.+++..+..++..
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr-~rLa~al~e--------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNR-YRLANALAE--------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHH-HHHHHHHHH--------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 3444444444555555543322 233333333 38999999999999987 5789999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH--HHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 124 QTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE--DYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 124 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
.|...+++..+.+|.-..++....+++.+...|.+..|+..|+.++...|+... .|..++...|+..++...+..+.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999999997677888999999999999999999999999999998765 46788999999999988887765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-05 Score=79.84 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=100.9
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
++++.|+.+|++..+.+|+ +...++.++...++-.+|++++.++++..|.+ ..+......++...++++.|..
T Consensus 183 ~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHH
Confidence 4579999999999999876 45668888888999999999999999999987 5678888999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 610 IYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
+.+++++..|++.. .|..++.++.+.|++++|...+..|
T Consensus 256 iAk~av~lsP~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 IAKKAVELSPSEFE--TWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHhCchhHH--HHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999766 8999999999999999999888755
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=74.59 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-
Q psy6461 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT- 139 (703)
Q Consensus 64 ~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 139 (703)
...|...+..+... .|++++|...|++.++..|++ +.++..+|.++...|++++|...|+++++..|.+
T Consensus 142 e~~~Y~~A~~l~~~-------~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 142 ANTDYNAAIALVQD-------KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 35666665543211 278999999999999999998 5899999999999999999999999999998853
Q ss_pred cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 140 QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
..+.+|..++.++...|+.+.|+..|+++++..|++..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 23677777788888899999999999999999999863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=74.06 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHh-h-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 30 SVKHWLRYIEHK-K-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 30 ~~~~w~~~~~~~-~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
+...+...+... . .+++++|...|+++++.+|++ +..+..++..+... |++++|...|+++++..|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~--------g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK--------GKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCCC
Confidence 457777776654 4 799999999999999999998 34555555554443 8999999999999999877
Q ss_pred ---CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc
Q psy6461 105 ---MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139 (703)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 139 (703)
.+.+|..++.++...|+.++|+.+|+++++..|.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56889999999999999999999999999999964
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.2e-05 Score=76.34 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHH-------cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 532 LERARDLFEQCL---EACPPRYAKTLYLLYAKLEEE-------HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 532 ~~~A~~~~~~al---~~~p~~~~~~~~~~~a~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
.++|..+|.+|+ ..+|+...+..++.+.++... .....+|+..-++|++.+|.|+......+.+... .
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~--~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL--S 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--h
Confidence 478999999999 889988433333333333321 2235678889999999999987665555555554 4
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHH
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMRE 681 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 681 (703)
++++.|...|++|+..+|+... .|..++.+..-.|+.++|+...++|++..|-.....+...|.+.+..++ .+++.+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~--~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIAS--LYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 5799999999999999999766 8999999999999999999999999999665555677777775555444 334443
Q ss_pred H
Q psy6461 682 M 682 (703)
Q Consensus 682 ~ 682 (703)
+
T Consensus 429 ~ 429 (458)
T PRK11906 429 L 429 (458)
T ss_pred H
Confidence 3
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0078 Score=56.92 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=76.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..+++.|+.++.--.+..|.+-.....++-++-.. .++..|..-|++.-...|.-....+-+++-+.+.+.+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--------Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL--------QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 45566677777777777775544433333322221 4577777777777777777666666667777777777
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CHHHHHH---HHHhcCCHHHHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE--DAEDYIE---YLSSIERLDEAAVKLA 197 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~---~~~~~~~~~~A~~~~~ 197 (703)
..|.++...... .|. -.......-+.+....++.-.++.+.++ -|. .....+. +....|++++|.+.|+
T Consensus 95 ADALrV~~~~~D-~~~-L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 95 ADALRVAFLLLD-NPA-LHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHHhcC-CHH-HHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHH
Confidence 777766654432 121 0111111112222234444444444433 232 1112222 2346677777777777
Q ss_pred Hhhccc
Q psy6461 198 YIVNKE 203 (703)
Q Consensus 198 ~~~~~~ 203 (703)
.++...
T Consensus 169 aAlqvs 174 (459)
T KOG4340|consen 169 AALQVS 174 (459)
T ss_pred HHHhhc
Confidence 776433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-05 Score=65.73 Aligned_cols=99 Identities=6% Similarity=-0.039 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
..+.-..++-..- +|+++.|...|.-.+..+|.+++.|..++..+... +++++|...|..|....+++|..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~--------k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK--------KQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHcccCCCCc
Confidence 3344444443333 78888888888888888888888888888776654 77888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
....|.+++..|+.+.|+..|+.++. .|
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~ 135 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RT 135 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Cc
Confidence 88888888888888888888888877 45
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.012 Score=57.88 Aligned_cols=289 Identities=15% Similarity=0.088 Sum_probs=170.1
Q ss_pred chhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKM--PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.|+-..|++.-.++-+....+ |-+.+.-++.-+-.|+++.|++-|+..+. +|....-.+--.|+... +.|..+.|+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq-r~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ-RLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH-hcccHHHHH
Confidence 477788898888887665443 44555556666678999999999998887 88532222222233322 478889999
Q ss_pred HHHHHHHhhCCCCHHHHH---HHHHhcCCHHHHHHHHHHhhccccccc-ccCCc-hhhhHHHHHHHHhcCccccccccHH
Q psy6461 163 RVFRRYLKLFPEDAEDYI---EYLSSIERLDEAAVKLAYIVNKESFVS-KHGKS-NHQLWNELCEMISQNPDKIRSLNVD 237 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~ 237 (703)
..-+++-..-|.-.-++. .-....|++++|+++.+......-... ...+. .+-+-.....++..+|. .+.
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~-----~Ar 249 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA-----SAR 249 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH-----HHH
Confidence 999999998888765543 334678999999999875542110000 00000 01111111222222322 111
Q ss_pred HHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy6461 238 AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPS 317 (703)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 317 (703)
.......+-. ......-..-+..+.+.|+..++..+++.+-+..|++. ++..|...
T Consensus 250 ~~A~~a~KL~-pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~a------------------- 305 (531)
T COG3898 250 DDALEANKLA-PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRA------------------- 305 (531)
T ss_pred HHHHHHhhcC-CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHh-------------------
Confidence 1122222211 22344555667777888888888888888888777643 33333321
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHH--HHhcCCCccCCchhHHH
Q psy6461 318 EEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEA--VKTVDPKLAVGKLHTLW 395 (703)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a--~~~~~~~~~~~~~~~~~ 395 (703)
-.|+. +++.++++ +..+.| ++....
T Consensus 306 ----------------------------------------------r~gdt--a~dRlkRa~~L~slk~-----nnaes~ 332 (531)
T COG3898 306 ----------------------------------------------RSGDT--ALDRLKRAKKLESLKP-----NNAESS 332 (531)
T ss_pred ----------------------------------------------cCCCc--HHHHHHHHHHHHhcCc-----cchHHH
Confidence 11221 22222222 222233 233344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCC
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA-GQEEAALRLMARATATPAR 462 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~ 462 (703)
+..+..-...|++..|+.--+.+....|.. .++..++.++.-. |+-.+++.++-++++...+
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa~r~~pre-----s~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAAAREAPRE-----SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhhCchh-----hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 555666667788888888888888777764 6788888877654 8888888888888876543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00016 Score=71.88 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=123.2
Q ss_pred HHHHHHcCChHHHHHHHHHhhccC--CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVP--YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
|..+...|++++|...|.++.... -++...-...+...+.++.+. ++++|...+++|+...-....
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~----------- 109 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR----------- 109 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-----------
Confidence 556666788888888888775542 223222345566666665444 888999999888765321100
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc----chH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR----YAK 552 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~ 552 (703)
.......+...+.+++.. .+++++|++.|++|+...... ...
T Consensus 110 ~~~aA~~~~~lA~~ye~~----------------------------------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQ----------------------------------LGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHHHHHHCCT----------------------------------T--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------------cCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 001133444444444443 034589999999999863221 124
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch--HH---HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC---cchH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE--MF---EMFNIYIKKAAEIYGIPKTRQIYERAIESLPE---EPTR 624 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 624 (703)
..+...+.++...|++++|..+|++.....-.+. .. ..+...+-...-.|+...|+..+++....+|. +...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 6889999999999999999999999987643321 11 22222233334468899999999999988873 3233
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHhcc
Q psy6461 625 QMCLKFAEMETK--LGEIDRARAIYAHCSQI 653 (703)
Q Consensus 625 ~~~~~~a~~~~~--~g~~~~A~~~~~~a~~~ 653 (703)
.+...++..... ...++.|..-|++...+
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 344444443332 23477777777665444
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.025 Score=60.03 Aligned_cols=274 Identities=16% Similarity=0.166 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-HHHH---H
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-DYIE---Y 182 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~---~ 182 (703)
..+-..+..+...|+++.|.++|-++ .++...+.+|.+.|+++.|-++-.+... |.... .|+. =
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAED 833 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHh
Confidence 34445567777778888888888753 3456667777788888877766555432 33322 3332 2
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+...|++.+|.++|--+-..+ .. +....++. ..+.+++..-+..++...+....++.-+
T Consensus 834 ldehgkf~eaeqlyiti~~p~--------~a-------iqmydk~~------~~ddmirlv~k~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIGEPD--------KA-------IQMYDKHG------LDDDMIRLVEKHHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred HHhhcchhhhhheeEEccCch--------HH-------HHHHHhhC------cchHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 356778887777763321100 00 01111111 1223444444444555567788899999
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
...|++..|...|-++-.-... ..+|.....++..+.-+.. ..+.+ .+-........+
T Consensus 893 e~~g~lkaae~~flea~d~kaa----vnmyk~s~lw~dayriakt-----egg~n----~~k~v~flwaks--------- 950 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAGDFKAA----VNMYKASELWEDAYRIAKT-----EGGAN----AEKHVAFLWAKS--------- 950 (1636)
T ss_pred HhccChhHHHHHHHhhhhHHHH----HHHhhhhhhHHHHHHHHhc-----ccccc----HHHHHHHHHHHh---------
Confidence 9999999999888775543221 1233322223322211000 00000 000000000000
Q ss_pred hhhhhhcCCC-cHHHHHHHH------hhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHH
Q psy6461 343 NSVLLRQNPH-NVLEWHKRV------RLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARL 413 (703)
Q Consensus 343 ~~~~l~~~p~-~~~~~~~~~------~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 413 (703)
...+ .+.+..+.. .+. .+.++-|-+.-+-+.+. ..+.+++.++.+++..|.+++|-+
T Consensus 951 ------iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--------k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 951 ------IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--------KMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred ------hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--------cCccchhHHhhhhhhccchhhhhH
Confidence 0000 000011111 110 13344444444433332 245688999999999999999999
Q ss_pred HHHHhhccCCCCcchHHHHHHHHH-----HHHHHcC-CHHHHHHHHH
Q psy6461 414 IFDKATLVPYTKVEDLATVWCEWA-----ELELRAG-QEEAALRLMA 454 (703)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~A~~~~~ 454 (703)
.|-.+++++.-|. .|++-. .-.++.| ++++|..+|-
T Consensus 1017 hyveaiklntyni-----twcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 1017 HYVEAIKLNTYNI-----TWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred hhHHHhhcccccc-----hhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence 9999999875442 344321 1113444 5666666653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.001 Score=59.74 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
..+.+..|.+|-..|-..-|+.-|.+++.+.|.-+ .+++-+|-.+...|+++.|.+.|+..++.+|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-------- 132 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-------- 132 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--------
Confidence 33455556677777888889999999999999887 899999999999999999999999999999973
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
.|+.+ .|+|..+ -.|++.-|.+-+.+--..+|+++-
T Consensus 133 --------------~Ya~l----------NRgi~~Y--------------------Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 133 --------------NYAHL----------NRGIALY--------------------YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred --------------hHHHh----------ccceeee--------------------ecCchHhhHHHHHHHHhcCCCChH
Confidence 12111 1222111 135668888888888888998854
Q ss_pred HHHHHHHHHHHHHcCChHHHHH-HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-----HH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMA-VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-----RQ 625 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~ 625 (703)
..+|+.+.. ..-++.+|.. +.+|+.+...+ .|-.++--.. .|.+ .-..+++++.+...++.. .+
T Consensus 169 R~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e-----~WG~~iV~~y-Lgki-S~e~l~~~~~a~a~~n~~~Ae~LTE 238 (297)
T COG4785 169 RSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKE-----QWGWNIVEFY-LGKI-SEETLMERLKADATDNTSLAEHLTE 238 (297)
T ss_pred HHHHHHHHH---hhCCHHHHHHHHHHHHHhccHh-----hhhHHHHHHH-Hhhc-cHHHHHHHHHhhccchHHHHHHHHH
Confidence 456666543 4457777766 55777766543 2322222111 2222 234566777666555432 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.+..++..+...|+.++|..+|+-|+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5667778888899999999999998875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=60.08 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-HHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-RQMCLKFA 631 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~a 631 (703)
+++..+..+...|+.++|+..|++++...... .....+..+...+...|++++|..++++++..+|+++. ..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 56777888888899999999999988865433 23455666667777788899999999999888887321 22666677
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q psy6461 632 EMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~ 652 (703)
..+...|+.++|..++-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788889999999998877765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=58.66 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=57.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..++...+++++|+.++++++..+|.++ .+|..+|.++.+.|++++|+..|+++++..|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----ELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4567789999999999999999999998 999999999999999999999999999999985
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0011 Score=59.45 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=131.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..+-++|.-.|||.+- -+|..+| .-|+..|.+++.+.|+.|.+++-+|-.+...|++
T Consensus 59 l~~eeRA~l~fERGvl--YDSlGL~---------------------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 59 LTDEERAQLLFERGVL--YDSLGLR---------------------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred CChHHHHHHHHHhcch--hhhhhHH---------------------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc
Confidence 3567889999999863 2344444 3478889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH--HHHHHHhcCCHHHHHHHHH-Hh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED--YIEYLSSIERLDEAAVKLA-YI 199 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~~~~~~~~~~~A~~~~~-~~ 199 (703)
+.|-..|+..++.+|+.+...+-..++-+ =-|++.-|..-+.+.-+.+|+++-. |.-+-...-+..+|..-+. ..
T Consensus 116 daa~eaFds~~ELDp~y~Ya~lNRgi~~Y--Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~ 193 (297)
T COG4785 116 DAAYEAFDSVLELDPTYNYAHLNRGIALY--YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRA 193 (297)
T ss_pred hHHHHHhhhHhccCCcchHHHhccceeee--ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 99999999999999964222222222222 3478899999999999999999853 3333334456677765553 33
Q ss_pred hcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc------cchhhHHHHHHHHHHHhCchHHHHH
Q psy6461 200 VNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT------DQLGHLWNSLADYYIRSGLFERARD 273 (703)
Q Consensus 200 ~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~ 273 (703)
... +.+.|--.+.-..- ..+..+++.+....... +--.+.++-+|..+...|+.++|..
T Consensus 194 ~~~----------d~e~WG~~iV~~yL-----gkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 194 EKS----------DKEQWGWNIVEFYL-----GKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred Hhc----------cHhhhhHHHHHHHH-----hhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 211 11223222111000 01122333332222211 1124678999999999999999999
Q ss_pred HHHHHHhh
Q psy6461 274 IYEEAIQT 281 (703)
Q Consensus 274 ~~~~~l~~ 281 (703)
+|+-++..
T Consensus 259 LfKLaian 266 (297)
T COG4785 259 LFKLAVAN 266 (297)
T ss_pred HHHHHHHH
Confidence 99998874
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=57.94 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+-.+.++..+.+.|++.+|+..|++++.-.+ .++ .+.+.+++..+..+++..|...+++..+.+|..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------- 157 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------- 157 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------
Confidence 44567888888899999999999999988633 343 788889999999999999999999999988874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
++++-...++..+...|.. ..|+..|+.++...|+
T Consensus 158 --------r~pd~~Ll~aR~laa~g~~-----------------------------------a~Aesafe~a~~~ypg-- 192 (251)
T COG4700 158 --------RSPDGHLLFARTLAAQGKY-----------------------------------ADAESAFEVAISYYPG-- 192 (251)
T ss_pred --------CCCCchHHHHHHHHhcCCc-----------------------------------hhHHHHHHHHHHhCCC--
Confidence 2466667777777766653 8899999999999888
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVY 575 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~ 575 (703)
+...+.|+.++.+.|..++|..-+
T Consensus 193 -~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 193 -PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred -HHHHHHHHHHHHHhcchhHHHHHH
Confidence 578899999999999776665443
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00042 Score=68.66 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
++++++.++.+.+++..|+....++|...|+|+ ...+.-++.+...|+++.|+..|.++++..|.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNV----KALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 578899999999999999999999999999998 889999999999999999999999999999985
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.058 Score=59.02 Aligned_cols=221 Identities=11% Similarity=0.058 Sum_probs=112.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.+.+.+|.+...+.++.+|+..-.-..-+-.+.+. |..++|...++..-..-|++....--+-.++...++.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~--------gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL--------GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh--------cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 56677888888888888887754433322222222 6667777666543333455555555666777777888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh----HHHHHHHHHHHhhCCCCHH-HH--HHHHHh-c---CC---
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP----ETAVRVFRRYLKLFPEDAE-DY--IEYLSS-I---ER--- 188 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~l~~~p~~~~-~~--~~~~~~-~---~~--- 188 (703)
++|..+|+++++.+|. ..+...+...+.+.+++ ..|.++|+ ..|.+.. .| ++++.. . ..
T Consensus 94 d~~~~~Ye~~~~~~P~---eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS---EELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hHHHHHHHHHHhhCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccchHHHHHHHHHHhccCCccccc
Confidence 8888888888888874 23333333333343433 33455555 4555543 23 222210 0 00
Q ss_pred ---HHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHh
Q psy6461 189 ---LDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRS 265 (703)
Q Consensus 189 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (703)
.-=|.+..+.++..++.. .......++..........+. ..+.+........+..+...-+.-.+++...
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~--~s~aE~~Lyl~iL~~~~k~~e-----al~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKI--ESEAEIILYLLILELQGKYQE-----ALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred chhHHHHHHHHHHHhccCCcc--chHHHHHHHHHHHHhcccHHH-----HHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 112444555555332100 000111122222222211111 1111112222223333333444567788888
Q ss_pred CchHHHHHHHHHHHhhcCCc
Q psy6461 266 GLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 266 ~~~~~A~~~~~~~l~~~~~~ 285 (703)
+++.+.-++-.+++...++.
T Consensus 240 ~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cChHHHHHHHHHHHHhCCcc
Confidence 99999999999999887763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.6e-05 Score=56.95 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=56.8
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
++++++|..+++++++.+|.++.+|..++.++... |++++|...|+++++..|+++......+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQL--------GRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh--------ccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 89999999999999999999999999999998765 8999999999999999999887654443
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00055 Score=67.87 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCC----Ccch-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYT----KVED-------LATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
-..|..+.+.|++..|...|++|++.... +..+ ...+++.++..+++.+.+.+|+....+++...|++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N- 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN- 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-
Confidence 44577888899999999999998776321 1100 12345566666666677777777777777777664
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
....+..+..+...+++ +.|+..|+++++
T Consensus 291 ----------------~KALyRrG~A~l~~~e~-----------------------------------~~A~~df~ka~k 319 (397)
T KOG0543|consen 291 ----------------VKALYRRGQALLALGEY-----------------------------------DLARDDFQKALK 319 (397)
T ss_pred ----------------hhHHHHHHHHHHhhccH-----------------------------------HHHHHHHHHHHH
Confidence 55555556555554443 667777777777
Q ss_pred hCCCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhccC
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLA-RHAMAVYERATGAVL 583 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p 583 (703)
..|.| ..+...++.+-.+...+ ++.+++|.+++...+
T Consensus 320 ~~P~N--ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 320 LEPSN--KAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 77776 44555555554443333 233555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0007 Score=56.61 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.+++..|..+...|+.++|+.+|++++....... .....++.++..+...|++++|..++++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3577888888899999999999999988754432 33478889999999999999999999999988786
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0024 Score=62.87 Aligned_cols=94 Identities=10% Similarity=-0.085 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHHHHHc
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
|+++.++..-+.-+..-..-.....-..++.+++..+.-.|+++.|++.|++.+.+ .-.+...-+...+.++..|.-.
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 66666666555433321000000012346777888888899999999999987654 2222222245677888888888
Q ss_pred CCHHHHHHHHHHHhcC
Q psy6461 444 GQEEAALRLMARATAT 459 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~ 459 (703)
..+++|+..+.+-+.+
T Consensus 289 ~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999998886654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.3e-05 Score=50.88 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHH
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAE 438 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 438 (703)
.+|+.+|..|...|++++|+.+|+++++.+|+++ .+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH----HHHHHhhh
Confidence 5789999999999999999999999999999998 88988875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.01 Score=55.62 Aligned_cols=72 Identities=13% Similarity=-0.033 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+..|..-|.-....|++++|...|+.+.+.+|.++-. ....+.++-..++.++++.|+..+++-+...|.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 45667777888888999999999999999998877633 5778888888899999999999999999999985
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.038 Score=51.82 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=111.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQA 475 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 475 (703)
..-+.++...|++++|.+...++..+ ++.-.=..+..+..+++-|.+.++++.+.+.+.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~------------ 170 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL---------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA------------ 170 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH------------
Confidence 33355667888999998888874332 333333445567778888888888888887541
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH
Q psy6461 476 RVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 555 (703)
....++ ..|..... +.+++..|--+|+....+.|.. +.+.
T Consensus 171 -------tLtQLA-------------------------~awv~la~------ggek~qdAfyifeE~s~k~~~T--~~ll 210 (299)
T KOG3081|consen 171 -------TLTQLA-------------------------QAWVKLAT------GGEKIQDAFYIFEELSEKTPPT--PLLL 210 (299)
T ss_pred -------HHHHHH-------------------------HHHHHHhc------cchhhhhHHHHHHHHhcccCCC--hHHH
Confidence 111121 12222221 2345688999999999977665 6788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHhCCCcch
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK-TRQIYERAIESLPEEPT 623 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~ 623 (703)
...+.+.+..|++++|..+++.++...++++ ......+......|..++ ......+....+|+++-
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp--etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDP--ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 8999999999999999999999999999874 344444444444555433 34566677777888653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.017 Score=55.45 Aligned_cols=204 Identities=20% Similarity=0.131 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhc--cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATL--VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
......+..+...+.+..+...+..++. ..+... ..+...+......+++..+...+.+++...+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 128 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLA----EALLNLGLLLEALGKYEEALELLEKALALDPDP------- 128 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-------
Confidence 3456666777778888888888888775 344433 677777788878888888888888888877653
Q ss_pred hhHHHHHHhhHHHHHHHHH-HHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC-
Q psy6461 471 ETVQARVYKSIKLWSLYAD-LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP- 548 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 548 (703)
......... ++.. .++.+.|...|++++...|.
T Consensus 129 ----------~~~~~~~~~~~~~~-----------------------------------~~~~~~a~~~~~~~~~~~~~~ 163 (291)
T COG0457 129 ----------DLAEALLALGALYE-----------------------------------LGDYEEALELYEKALELDPEL 163 (291)
T ss_pred ----------chHHHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhcCCCc
Confidence 111111111 2222 24458888888888776662
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 549 RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCL 628 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 628 (703)
......+...+......|++..+...+.+++...+.. ....+......+...+.++.|...+.+++...|.... .+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 240 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAE--ALY 240 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHH--HHh
Confidence 1113455555555667788888888888888888772 1223444444455556788888888888888886332 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 629 KFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
..+..+...|..+.+...+.++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 555555566778888888888888743
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=62.03 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--cccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 46 KAIINTIYERSLKELPGSYKLWYNYLKLRRKQ--VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 46 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
|+.|++.++.....+|.+.+.+..++..+++. .........-+++|..-|+.||.++|+...+...+|+.+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 67899999999999999999888877666543 2111111245888999999999999999999999999987765
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0097 Score=55.82 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh-------c
Q psy6461 86 PSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-------H 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-------~ 155 (703)
|++++|...|+.+.+.+|.+ ..+.++++-...+.++++.|+...++-++..|++.+ .-|..|...... .
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCCccc
Confidence 56666666666666665543 355556666666666666666666666666664322 223333332221 1
Q ss_pred CC---hHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCc
Q psy6461 156 AV---PETAVRVFRRYLKLFPEDAE--------------------DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKS 212 (703)
Q Consensus 156 ~~---~~~A~~~~~~~l~~~p~~~~--------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (703)
.+ ...|..-|+..+...|++.- ....++.+.|.+..|...++.++..
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~---------- 196 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN---------- 196 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc----------
Confidence 11 14455556666666666542 1235667778888888887777632
Q ss_pred hhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCc
Q psy6461 213 NHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 213 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 285 (703)
.|+.. ...+....+.+.|...|-.++|...-+-+-...|+.
T Consensus 197 --------------y~~t~------------------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 197 --------------YPDTS------------------AVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred --------------ccccc------------------chHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 11110 113566777788888888888766654444455553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=49.11 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLK 72 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~ 72 (703)
+.+|..+++.+. .|++++|+.+|+++++.+|+++.+|..+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368999999998 999999999999999999999999998764
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0018 Score=54.99 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHc----CChHHHHHHHHHHhhccCcch-------HHHHHHHHHHHHHH
Q psy6461 533 ERARDLFEQCLEACP-PRYAKTLYLLYAKLEEEH----GLARHAMAVYERATGAVLPEE-------MFEMFNIYIKKAAE 600 (703)
Q Consensus 533 ~~A~~~~~~al~~~p-~~~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~ 600 (703)
++.++.|++.+.... .+.+...|..|....... |.-..-..++++++..+.++. -+.+|..|+.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~---- 77 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD---- 77 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----
Confidence 344555666665544 222235666666554432 344555566666666654432 1234444443
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
..+.++++|..+....-....+.+|..||.++.+.|++++|..+|++++
T Consensus 78 --~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 --LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2336777777777765444455678888888888888888888887764
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=57.39 Aligned_cols=96 Identities=9% Similarity=-0.053 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEM 633 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (703)
....+|.-+...|++++|..+|.-....+|.+ ...|.++...+...+++++|...|..|....+++|. .....+.+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~f~agqC 114 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--ccchHHHH
Confidence 34455555556777777777777777766666 345666666666677777777777777777777776 45566677
Q ss_pred HHHcCCHHHHHHHHHHHhcc
Q psy6461 634 ETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 634 ~~~~g~~~~A~~~~~~a~~~ 653 (703)
+...|+.+.|+..|+.+++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 77777777788777777774
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0029 Score=53.86 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc-cccHHHHHHHHHhcCC---
Q psy6461 85 DPSYEDVNNTFERSLVFMHK---MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-HRVWPLYLSFVKSHAV--- 157 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~--- 157 (703)
.|++++|+..|+......|. .+.+.+.++-.+...+++++|...+++.++++|.+.. +.++...+-....+..
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~ 102 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL 102 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence 38899999999999998875 4588888899999999999999999999999996432 1222222222222222
Q ss_pred ------------hHHHHHHHHHHHhhCCCCH
Q psy6461 158 ------------PETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 158 ------------~~~A~~~~~~~l~~~p~~~ 176 (703)
...|...|++.+...|++.
T Consensus 103 ~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 103 QSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 3567777888888888774
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.095 Score=50.04 Aligned_cols=220 Identities=21% Similarity=0.181 Sum_probs=153.1
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
.+....+...+..++...+.. .........+..+...+++..+...+..+.. ..+. ...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 96 (291)
T COG0457 36 LGELAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALELELLPN-----------------LAE 96 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc-----------------hHH
Confidence 445566666777666665542 0015677777778889999999999998886 3443 245
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHH-H
Q psy6461 483 LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAK-L 561 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~-~ 561 (703)
.+...+......++ +..+...+.+++...+... ........ +
T Consensus 97 ~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 139 (291)
T COG0457 97 ALLNLGLLLEALGK-----------------------------------YEEALELLEKALALDPDPD--LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHhh-----------------------------------HHHHHHHHHHHHcCCCCcc--hHHHHHHHHH
Confidence 55555555444433 3789999999999877762 34444444 7
Q ss_pred HHHcCChHHHHHHHHHHhhccCc-chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHcCC
Q psy6461 562 EEEHGLARHAMAVYERATGAVLP-EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE-EPTRQMCLKFAEMETKLGE 639 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~a~~~~~~g~ 639 (703)
+...|+++.|...|++++...|. .................++.+.+...+.+++...|. ... .+...+..+...|+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE--ALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH--HHHHhhHHHHHccc
Confidence 88999999999999999886662 222223333333345578999999999999999988 344 78888888889999
Q ss_pred HHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 640 IDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 640 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
++.|...+.+++...+. ....+..........|..+.+...+.
T Consensus 218 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 218 YEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred HHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998544 23444444444445566777766653
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.036 Score=51.97 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHhCCCcch---HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 532 LERARDLFEQCLEACPPRYA---KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.|-|++.++++...+-+..- ...|+.++ ...+.+.+|.-+|+..-++.|.. ..+.++.+-..+..+++++|.
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHH
Confidence 35555555555555444311 11222222 12233555555555555533332 223344444444455555555
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (703)
.+.+.+|...|++|. .....+-.-...|...+
T Consensus 228 ~lL~eaL~kd~~dpe--tL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 228 SLLEEALDKDAKDPE--TLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhccCCCHH--HHHHHHHHHHHhCCChH
Confidence 555555555555444 34444333334454433
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=55.28 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhccC-cchHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHhCCCcch-------HHHHHHHHHHHHH
Q psy6461 569 RHAMAVYERATGAVL-PEEMFEMFNIYIKKAAEI----YGIPKTRQIYERAIESLPEEPT-------RQMCLKFAEMETK 636 (703)
Q Consensus 569 ~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~a~~~~~ 636 (703)
++.++.|+..+.... .+++...|..|+....+. +....-..++++|+..+.+++. ..+|+.||++
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~--- 78 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL--- 78 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH---
Confidence 456788888888877 677799999999998773 4556778899999998765432 4588888775
Q ss_pred cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 637 LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRI 685 (703)
Q Consensus 637 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 685 (703)
.+.++.+|+...+..=....+.+|..|+.+....|+..+|.++++.
T Consensus 79 ---~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 ---SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp ---BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3388999988876533344699999999999999999999999854
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0028 Score=53.95 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS-----YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
...+..-+.... .|++++|++.|+.....+|.+ ..+|+.++-+. .++++.|...+++-++.+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----------~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----------QGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhCCC
Confidence 355555565555 899999999999999999966 47888887763 38899999999999999998
Q ss_pred CHH---HHHHHHHHHHhccC---------------hHHHHHHHHHHHHhCCcc
Q psy6461 105 MPR---IWLDYGRFLMDQHK---------------ITQTRHVFDRALRALPIT 139 (703)
Q Consensus 105 ~~~---~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~ 139 (703)
++. ++...|...+.+.. ...|..-|++.++..|.+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 873 34444444444433 678889999999999954
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0025 Score=60.26 Aligned_cols=91 Identities=12% Similarity=0.184 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP---RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A 161 (703)
|++..|...|..-++..|++. .+.+=+|+.+..+|+++.|..+|.++.+..|.+. .++....++.+..+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 445555555555555555422 3333345555555666666666666655555331 234455555555555555666
Q ss_pred HHHHHHHHhhCCCCH
Q psy6461 162 VRVFRRYLKLFPEDA 176 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~ 176 (703)
..+|+..++..|++.
T Consensus 235 ~atl~qv~k~YP~t~ 249 (262)
T COG1729 235 CATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHCCCCH
Confidence 666666666666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=61.98 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=70.9
Q ss_pred HHHhccChHHHHHHHHHHHHhCCccc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH---HHHHHH---HHhcC
Q psy6461 115 FLMDQHKITQTRHVFDRALRALPITQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA---EDYIEY---LSSIE 187 (703)
Q Consensus 115 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~---~~~~~ 187 (703)
-+...|++..|...|...++..|.+. .+.....+++.+..+|+++.|...|.++.+..|.+. +.++.+ ..+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 34566889999999999999999642 255566677777799999999999999999988765 456554 35789
Q ss_pred CHHHHHHHHHHhhc
Q psy6461 188 RLDEAAVKLAYIVN 201 (703)
Q Consensus 188 ~~~~A~~~~~~~~~ 201 (703)
+.++|+..|.++++
T Consensus 230 ~~d~A~atl~qv~k 243 (262)
T COG1729 230 NTDEACATLQQVIK 243 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999985
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00024 Score=44.33 Aligned_cols=33 Identities=3% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
.|++||+.+|+++.+|..+|.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999886
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0007 Score=68.79 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=63.6
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc---ccHHHHHHHHHhcCChHHHHHHHHHHHhh
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH---RVWPLYLSFVKSHAVPETAVRVFRRYLKL 171 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 171 (703)
.+|+++..|++++..+...|++++|...|+++|+.+|. +. .+|...+.++...|+.++|+..|+++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd--~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN--PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999995 34 35889999999999999999999999997
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00092 Score=67.97 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=64.5
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 58 KELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI---WLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 58 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
..+|++...|.+++..+... |++++|...|++|++.+|++... |++.+.++..+|++++|...+++|++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~l--------GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSK--------GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47899999999999887654 89999999999999999999854 99999999999999999999999999
Q ss_pred h
Q psy6461 135 A 135 (703)
Q Consensus 135 ~ 135 (703)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 6
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00065 Score=52.54 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhcc---CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLV---PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
...++..+|.++...|++++|+..|++++.+ .+.........+..+|.++...|++++|+..+++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999876 22222234678999999999999999999999998864
|
... |
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.087 Score=49.24 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=109.4
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHHhcC
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE----EMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~ 603 (703)
+.+++.-...++.+.++.+|... +.+...++.+.+..|+.+.|...|++.-+....- ....+...........++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~-p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQE-PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 34555778889999999885432 5788999999999999999999999665432211 111222233333344678
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC--ChHhHHHHHHHHHHcCCHHHHHH
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV--TAGFWAAWKSFEITHGNEDTMRE 681 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~ 681 (703)
+..|...|.+++..+|.++. ....-|-++.-.|+...|++..+.+++..|... ...+++.-..+|...-+..+.+.
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~--a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~ 345 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAV--ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQKKQ 345 (366)
T ss_pred hHHHHHHHhhccccCCCchh--hhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhHHH
Confidence 88898899999999998765 556666677779999999999999999865321 22333333333333333333332
Q ss_pred HHH--HHHHHHHHhhhccc
Q psy6461 682 MLR--IKRSVQAQYNTQVL 698 (703)
Q Consensus 682 ~~~--~~~~~~~~~~~~~~ 698 (703)
.+. ++++..-+++|+.|
T Consensus 346 ~l~~~ia~~~~d~f~~~c~ 364 (366)
T KOG2796|consen 346 ALLEAVAGKEGDSFNTQCL 364 (366)
T ss_pred HHHHHHhccCCCcccchhh
Confidence 222 35656666666654
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.12 Score=50.62 Aligned_cols=219 Identities=16% Similarity=0.088 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL--ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
++.+.++..+...+.++++...|+++++..-.+-+.. -.++..++.++.+..++++|.-...+|..+...- .-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~---~l~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY---GLKD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc---CcCc
Confidence 4566678888888999999999999988732221111 3678999999999999999998888877643210 0000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC---C
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC---P 547 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~---p 547 (703)
-..+.| .-..+.++-.+.. .|++-.|.+..+.+.++. .
T Consensus 200 ~~~kyr----~~~lyhmaValR~-----------------------------------~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 200 WSLKYR----AMSLYHMAVALRL-----------------------------------LGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred hhHHHH----HHHHHHHHHHHHH-----------------------------------hcccccHHHHHHHHHHHHHHhC
Confidence 000000 0111111111122 234466777777766652 1
Q ss_pred Cc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc--c--hHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHh
Q psy6461 548 PR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP--E--EMFEMFNIYIKKAAEIYGI-----PKTRQIYERAIES 617 (703)
Q Consensus 548 ~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~~~~~~~~~~~~~~-----~~A~~~~~~al~~ 617 (703)
+. .-.....-+++++...|+.+.|..-|+.|+..-.. | ..++...+........+-. =+|.+.-.++++.
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 11 11346678999999999999999999999876432 1 1223333333322222222 2477777777776
Q ss_pred CCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 618 LPEEP----TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 618 ~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
...-. ...+...++.+|...|.-++-+..+.+|-+.
T Consensus 321 A~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 321 ASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 43221 2346678899999999888777777776554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.005 Score=54.28 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
++.|++.++.....+|.+ .+.++.++..+..+.+++-...+..
T Consensus 7 FE~ark~aea~y~~nP~D-----------------adnL~~WG~ALLELAqfk~g~es~~-------------------- 49 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD-----------------ADNLTNWGGALLELAQFKQGPESKK-------------------- 49 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------------------HHHHHHHHHHHHHHHHHS-HHHHHH--------------------
T ss_pred HHHHHHHHHHHHHhCcHh-----------------HHHHHHHHHHHHHHHhccCcchHHH--------------------
Confidence 688999999999999985 7888888877766544311011100
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHhhccCcc
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG-----------LARHAMAVYERATGAVLPE 585 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~ 585 (703)
-+++|.+-|+.|+.++|+. ...+..+|..+...+ .+++|...|++|....|.+
T Consensus 50 -----miedAisK~eeAL~I~P~~--hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 50 -----MIEDAISKFEEALKINPNK--HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -----HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred -----HHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1378999999999999998 446666666665543 2456666666666666665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.19 Score=46.58 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH----HHHHHHHHHHHHhcC
Q psy6461 532 LERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF----EMFNIYIKKAAEIYG 603 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~~~~~~ 603 (703)
+.++..+|++|+...-.+. .....-.-+.+ ....++++|+.+|.+++..+..+.+. .++......+.+...
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 3566666666665422111 11222222222 34557777777777777666554322 223333333334445
Q ss_pred chHHHHHHHHHHHh------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC---CCCChHhHHHHHHHHHHcC
Q psy6461 604 IPKTRQIYERAIES------LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD---PRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 604 ~~~A~~~~~~al~~------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~g 674 (703)
+++|-..+.+-... .|+ .-..++..+-++.-..++..|..+|+.+.++.. ++ .....+++..++ ..|
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~--~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se-d~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNS--QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE-DSRSLENLLTAY-DEG 241 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhccc--HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH-HHHHHHHHHHHh-ccC
Confidence 55555444433221 122 112455555555666789999999999888721 22 344555554433 458
Q ss_pred CHHHHHHHHH
Q psy6461 675 NEDTMREMLR 684 (703)
Q Consensus 675 ~~~~~~~~~~ 684 (703)
+.+.+.+|+.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 8888888863
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0072 Score=53.77 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=49.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
|.-+..+|++++|..-|..||..+|...... .-+|..-+...++.++++.|+.-..+|+++.|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 4556678899999999999998888765333 345666677778888899999999999888886
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00081 Score=41.67 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=28.7
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLR 74 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~ 74 (703)
|+++.|+.+|++++..+|.++.+|..|++++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5688999999999999999999999999875
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.075 Score=53.74 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC-cchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcCCCCCccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK-VEDLATVWCEWAELELR---AGQEEAALRLMARATATPARPVAY 466 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~ 466 (703)
.+++.+.+--.|...++++.-+++.+..-.. |.. ......+-..||..+.+ .|+.++|+.++..++......
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~--- 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP--- 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---
Confidence 3456667767788899999999999877655 221 11223788899999998 899999999999976555443
Q ss_pred ccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHH--hCCCChhHHHHHHHHHHH
Q psy6461 467 HDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSR--YGGTKLERARDLFEQCLE 544 (703)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~A~~~~~~al~ 544 (703)
+++.+-..+.++... +... ......++|...|.++.+
T Consensus 216 -------------~~d~~gL~GRIyKD~----------------------------~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 216 -------------DPDTLGLLGRIYKDL----------------------------FLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred -------------ChHHHHHHHHHHHHH----------------------------HHHcCccchHHHHHHHHHHHHHHc
Confidence 477777777776542 0110 012235899999999999
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHH----HHHH---HHHh-hc--cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHH
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHA----MAVY---ERAT-GA--VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERA 614 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A----~~~~---~~al-~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (703)
..|+..+ =++++-++...|...+. +++- ...+ +. ..+....+....++....-.+++++|.+.++++
T Consensus 255 ~~~~~Y~---GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 255 IEPDYYS---GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred CCccccc---hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987642 34555555555542222 2222 0001 11 111122344445555555566777777777777
Q ss_pred HHhCC
Q psy6461 615 IESLP 619 (703)
Q Consensus 615 l~~~p 619 (703)
++..|
T Consensus 332 ~~l~~ 336 (374)
T PF13281_consen 332 FKLKP 336 (374)
T ss_pred hhcCC
Confidence 76654
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0079 Score=55.15 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=83.1
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..++..|+..|-|++.++|..+.+|.+-+..+++. ++++.+.....+|+.+.|+.......++.+.+....+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~--------~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL--------KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh--------hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 35678888999999999999999999888887764 6788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---CCcccccccHHHHHHH
Q psy6461 123 TQTRHVFDRALRA---LPITQHHRVWPLYLSF 151 (703)
Q Consensus 123 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~ 151 (703)
+.|..++++|... .|.+....+|..+...
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999998443 3333456777776655
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.24 Score=45.64 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVED---LATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
....+..+.+-...+++.+|+.+|++.....-.|.-. ...-++.-+...+-..+.-.+...+++-...+|..
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 3456777777778889999999999877664444300 01222333333444577778888888888899974
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0032 Score=55.88 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=72.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMP-----RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
..|++++|..-|..||...|..+ -++.+.+.+.++++..+.|..-..+++++.|+ ...+...-+..|.+...+
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhhhhH
Confidence 35889999999999999888644 35556677778888888999999999998884 455555556677777888
Q ss_pred HHHHHHHHHHHhhCCCCHH
Q psy6461 159 ETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 159 ~~A~~~~~~~l~~~p~~~~ 177 (703)
+.|+.-|+++++.+|...+
T Consensus 185 eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHHHHHhCcchHH
Confidence 8999999999998888753
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.085 Score=50.59 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=113.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.++..+|...|..++...|.+ ..+-+.++.++...|+.+.|..++...-.....+.... ....+.+..+....++..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~--~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPEN--SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQ 223 (304)
T ss_pred ccchhhHHHHHHHHHHhCccc--chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHH
Confidence 466799999999999999998 57999999999999999999999886544444432222 334566666655555544
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
. +++.+..+|++.. .-+.+|..+...|+.+.|...+-..+.......+...-..+.++....|+.+-+-
T Consensus 224 ~-l~~~~aadPdd~~--aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 224 D-LQRRLAADPDDVE--AALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred H-HHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3 4566778998766 8899999999999999999999888887555556888888999999999766643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0009 Score=41.73 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHH
Q psy6461 538 LFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 538 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
+|+++|+.+|++ +.+|..+|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n--~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN--AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC--HHHHHHHHHHHHHCcCHHhhcC
Confidence 478999999999 6799999999999999998863
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0084 Score=49.32 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=76.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHH
Q psy6461 559 AKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT--RQMCLKFAEMETK 636 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~ 636 (703)
+-.....|+.+.|+..|.+++...|..+ ..|+.-.+.+.-.|+.++|.+-+.++++...+... -+.++..+.++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3445578899999999999999999874 46677777777788999999999999998665432 2477888889999
Q ss_pred cCCHHHHHHHHHHHhcccCC
Q psy6461 637 LGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 637 ~g~~~~A~~~~~~a~~~~~~ 656 (703)
.|+.+.||.-|++|-++-++
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 99999999999999888443
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0047 Score=56.55 Aligned_cols=93 Identities=13% Similarity=0.196 Sum_probs=80.8
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
+-++.|.....+..|..-|.+|+..+|..+..|.+-+.++++..+.+.+..-..+|++.+| +.......++.+.....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhc
Confidence 4456677777899999999999999999999999999999999999999999999999999 55677777777777777
Q ss_pred ChHHHHHHHHHHHhh
Q psy6461 157 VPETAVRVFRRYLKL 171 (703)
Q Consensus 157 ~~~~A~~~~~~~l~~ 171 (703)
.++.|+..+.++...
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 889999999998543
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.028 Score=47.15 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 605 PKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH 649 (703)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (703)
++.+++|..+....-....+.++..||.++.+.|++.+|..+|++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 335666666665544444445666777777777777777776653
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.025 Score=56.05 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHHHHHc
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
|+....+.+|+.|++.-..+ .....-+|..++..|.-.+++++|.++-.--+.+ .-.+...-+..--.++..+--.
T Consensus 31 gdcraGv~ff~aA~qvGTeD--l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTED--LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchH--HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 78888999999998862221 1234567777777888888888887764322111 0011000012223445555556
Q ss_pred CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCC
Q psy6461 444 GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGT 496 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (703)
|.+++|+....+-+..... +..|+. ..+.++..+.++...|.
T Consensus 109 G~fdeA~~cc~rhLd~are----------LgDrv~-e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARE----------LGDRVL-ESRALYNLGNVYHAKGK 150 (639)
T ss_pred cccchHHHHHHHHhHHHHH----------HhHHHh-hhHHHhhhhhhhhhccc
Confidence 7788877766654432211 111111 13556666777766554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0052 Score=47.37 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc-hHHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP-TRQMCLKFA 631 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a 631 (703)
.++..+|.++...|++++|+..|+++++.... ..++++ ....+..++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------------------~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQ--------------------------------LGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------------------------------TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------------HCCCCHHHHHHHHHHH
Confidence 45666666666677777777766666654110 011111 133667778
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc
Q psy6461 632 EMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.++...|++++|...+++|+++
T Consensus 54 ~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 54 ECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888888775
|
... |
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.023 Score=47.60 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=72.6
Q ss_pred HHHHHHHHh-hccCcchHHHHHHHHHHHHHHh---c-CchHHHHHHHHHHHhCCCc------c-hHHHHHHHHHHHHHcC
Q psy6461 571 AMAVYERAT-GAVLPEEMFEMFNIYIKKAAEI---Y-GIPKTRQIYERAIESLPEE------P-TRQMCLKFAEMETKLG 638 (703)
Q Consensus 571 A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~---~-~~~~A~~~~~~al~~~p~~------~-~~~~~~~~a~~~~~~g 638 (703)
-++.|+..+ .....+++...|.-|+....+. | .-..-..++++|++.+-++ + ...+|+.|+++ ++
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~---~~ 80 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN---CD 80 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh---cC
Confidence 355566665 4455555677777777776541 2 2234467777777764322 2 24599999886 34
Q ss_pred CHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 639 EIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
.++.+|+...+..=....+.+|+.|+.+....|...+|.+|++
T Consensus 81 ---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 ---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred ---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777665542233369999999999999999999999984
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.43 Score=44.06 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=10.2
Q ss_pred hcCchHHHHHHHHHHHhCCCc
Q psy6461 601 IYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~ 621 (703)
++++.+|..+|++.....-++
T Consensus 167 leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 445555555555554444333
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.026 Score=46.51 Aligned_cols=90 Identities=19% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch--HHHHHHHHHHHHHHhcCch
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE--MFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~ 605 (703)
..++++.|.+.|.+++...|.. +.+|.+-++.+.-.|+.++|..-+.+|++...+.. ..+.|.--..++...|+.+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4688999999999999999998 56999999999999999999999999998765432 2344444455566688999
Q ss_pred HHHHHHHHHHHhCC
Q psy6461 606 KTRQIYERAIESLP 619 (703)
Q Consensus 606 ~A~~~~~~al~~~p 619 (703)
.||.-|+.+-+...
T Consensus 133 ~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 133 AARADFEAAAQLGS 146 (175)
T ss_pred HHHHhHHHHHHhCC
Confidence 99999998887653
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=1.5 Score=49.27 Aligned_cols=273 Identities=10% Similarity=0.120 Sum_probs=143.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
++-+++|..+|++- ..+.+ ..+++.. -+++|.|-..-+++ +.+.+|..++......|...+|+.
T Consensus 1061 ~~LyEEAF~ifkkf----~~n~~----A~~VLie~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKF----DMNVS----AIQVLIENIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhHHHHHHHHHHHh----cccHH----HHHHHHHHhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHH
Confidence 35677888877752 22222 2333333 36777777776664 336789999988888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
-|-++ -+|.+....++...+.|.+++-++.+.-+.+.-. .+....++-..|++.-+ +.+.
T Consensus 1126 Syika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~----E~~id~eLi~AyAkt~r--------------l~el 1185 (1666)
T KOG0985|consen 1126 SYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR----EPYIDSELIFAYAKTNR--------------LTEL 1185 (1666)
T ss_pred HHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc----CccchHHHHHHHHHhch--------------HHHH
Confidence 87765 3566665667788889999998888865542110 00111111111111100 0000
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 323 (703)
-.-..+++..-....|+-+...|.++.|+-+|... .+|+.+-.....+.
T Consensus 1186 E~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~Lg------------------------ 1234 (1666)
T KOG0985|consen 1186 EEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLG------------------------ 1234 (1666)
T ss_pred HHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHH------------------------
Confidence 00011122333455677777788888887777652 23333322222221
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
.|..+.+ ...-..+...|-......- + .+.|+-| +.+.-... --.+-.-.+..+|.
T Consensus 1235 ------eyQ~AVD----------~aRKAns~ktWK~VcfaCv---d--~~EFrlA-QiCGL~ii--vhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1235 ------EYQGAVD----------AARKANSTKTWKEVCFACV---D--KEEFRLA-QICGLNII--VHADELEELIEYYQ 1290 (1666)
T ss_pred ------HHHHHHH----------HhhhccchhHHHHHHHHHh---c--hhhhhHH-HhcCceEE--EehHhHHHHHHHHH
Confidence 1111111 0111223344433322110 0 0011110 00110000 01233456678889
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRL 452 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 452 (703)
..|-+++-+.+++.++-+..-+. .++..++-+|.+. ++++-++.
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERAHM----gmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHM----GMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHHHH----HHHHHHHHHHHhc-CHHHHHHH
Confidence 99999999999999998876665 7788888777654 34444443
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.39 Score=47.24 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc----c--hH--HHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYA----KTLYLLYAKLEEEHGLARHAMAVYERATGAVLP----E--EM--FEMFNIYIKKA 598 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~--~~--~~~~~~~~~~~ 598 (703)
.++++.+.|+.|++....+.+ ..++..++.++....++++|.-...+|...... + .. ......+.-.+
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 358889999999987433321 248899999999999999999888888765421 1 11 11112223334
Q ss_pred HHhcCchHHHHHHHHHHHhC---CCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 599 AEIYGIPKTRQIYERAIESL---PEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~---p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+|...+|.+..+.+.+.. .|.+ +..-..-++++++..|+.+.|..-|+.|+..
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 45788888998888887763 2322 1224567899999999999999999999876
|
|
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0031 Score=37.74 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6461 45 PKAIINTIYERSLKELPGSYKLWYNYLKLR 74 (703)
Q Consensus 45 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~ 74 (703)
.+++|+.+|||.+...|+ +..|+.|++++
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence 578999999999999875 99999999885
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0043 Score=38.68 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+|..+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=56.64 Aligned_cols=60 Identities=18% Similarity=0.001 Sum_probs=49.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPA 461 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 461 (703)
-|.-|.++|.+++|+..|.+++...|.|+ ..+..-+..|++.+++..|..-...|+..+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNP----VYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCc----cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 36677788999999999999999988887 7788888888888888888888777777653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.99 Score=44.68 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=135.6
Q ss_pred HHHcCChHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 402 YEVNDQLEDARLIFDKATLV----PYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
.++.|+++.|..+|.|+-.. +|+....+..+.+..|.-....+ +++.|..++++|..................
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~-- 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS-- 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH--
Confidence 35688999999999887443 45555556777888888888888 999999999999877422000000000000
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
..-..+...++..+...+.. ...++|..+++.+-...|+. +.++.
T Consensus 81 -elr~~iL~~La~~~l~~~~~--------------------------------~~~~ka~~~l~~l~~e~~~~--~~~~~ 125 (278)
T PF08631_consen 81 -ELRLSILRLLANAYLEWDTY--------------------------------ESVEKALNALRLLESEYGNK--PEVFL 125 (278)
T ss_pred -HHHHHHHHHHHHHHHcCCCh--------------------------------HHHHHHHHHHHHHHHhCCCC--cHHHH
Confidence 00123333344444333322 12367888888887788887 45666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccC-cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcc-hH-HHHHHHH
Q psy6461 557 LYAKLEEEHGLARHAMAVYERATGAVL-PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEP-TR-QMCLKFA 631 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~-~~-~~~~~~a 631 (703)
....+..+.++.+.+..++.+++...+ .+..+.....-+..... .....+...+...|.. .|... .. ...+...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~ 204 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRV 204 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666668889999999999998876 33333333333322222 2344555555555543 22211 11 1222332
Q ss_pred HHHHHcCC------HHHHHHHHHHHhcccCC--CC------ChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 632 EMETKLGE------IDRARAIYAHCSQICDP--RV------TAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 632 ~~~~~~g~------~~~A~~~~~~a~~~~~~--~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
.+..+.++ .+....++.+..+.... +. ...+|+. +.-....+++++|.++++.+-
T Consensus 205 ~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 205 LLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 22222222 33344444433222111 10 2334443 445566789999999987654
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.41 Score=49.40 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=111.2
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHh
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYK 479 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 479 (703)
.-.++..+.++-++.-.+||+++|.+. ..|+.++. -......+|..+|++|++........
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCA----dAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~------------- 236 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCA----DAYILLAE--EEASTIVEAEELLRQAVKAGEASLGK------------- 236 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhh----HHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhch-------------
Confidence 344567778888888899999999887 77777764 33556899999999998765432110
Q ss_pred hHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 480 SIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYA 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 559 (703)
.......|.. ++- +..-...+...+-.++...+. ..|+.++|.+.+...++..|....-.++..+.
T Consensus 237 --------s~~~~~~g~~--~e~-~~~Rdt~~~~y~KrRLAmCar---klGr~~EAIk~~rdLlke~p~~~~l~IrenLi 302 (539)
T PF04184_consen 237 --------SQFLQHHGHF--WEA-WHRRDTNVLVYAKRRLAMCAR---KLGRLREAIKMFRDLLKEFPNLDNLNIRENLI 302 (539)
T ss_pred --------hhhhhcccch--hhh-hhccccchhhhhHHHHHHHHH---HhCChHHHHHHHHHHHhhCCccchhhHHHHHH
Confidence 0000111110 000 000000111112222221122 35788999999999999888642245888899
Q ss_pred HHHHHcCChHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHhc-----------Cc----hHHHHHHHHHHHhCCCcc
Q psy6461 560 KLEEEHGLARHAMAVYERATGA-VLPEEMFEMFNIYIKKAAEIY-----------GI----PKTRQIYERAIESLPEEP 622 (703)
Q Consensus 560 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~-----------~~----~~A~~~~~~al~~~p~~~ 622 (703)
..+...+.+.++.+++.+-=+. .|+++ ...|..-+......+ +. ..|.+...||++.+|.-|
T Consensus 303 e~LLelq~Yad~q~lL~kYdDi~lpkSA-ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKYDDISLPKSA-TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhcCCHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999885433 24432 222332221111111 11 245688999999998644
|
The molecular function of this protein is uncertain. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0062 Score=37.52 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy6461 87 SYEDVNNTFERSLVFMHKMPRIWLDYGRFLM 117 (703)
Q Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 117 (703)
+.+.|+.+|+++++..|.++.+|+.|+.++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4567788888888888888888888877753
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0072 Score=58.22 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=81.2
Q ss_pred HhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 76 KQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 76 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
.+-++.+...|.|++|+..|.+++...|.|+-.+.+.+..|+++.++..|..-+..|+.++- ....+|..-+..-...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHH
Confidence 34456667789999999999999999999999999999999999999999999999998765 2233333333333356
Q ss_pred CChHHHHHHHHHHHhhCCCCHHH
Q psy6461 156 AVPETAVRVFRRYLKLFPEDAED 178 (703)
Q Consensus 156 ~~~~~A~~~~~~~l~~~p~~~~~ 178 (703)
|..++|.+-++.+|++.|++.+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHH
Confidence 77899999999999999998653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.067 Score=47.14 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=65.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSY------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.++...+...+++++....... .-|.. ..+..++... ..+...++..+
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~--------------------~~r~~l~~~~------~~~~~~l~~~~ 72 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVE--------------------PERERLRELY------LDALERLAEAL 72 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH--------------------HHHHHHHHHH------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH--------------------HHHHHHHHHH------HHHHHHHHHHH
Confidence 6788899999999998765332 13332 2233333321 24455667777
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
...|++++|..++++++..+| .+..+|..+...+...|+...|++.|++...
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 778888888888888888888 4577888888888888888888888877643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0095 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 106 PRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+.+|..+|.++...|++++|+..|+++++..|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 356778888888888888888888888888873
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0063 Score=36.46 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
.+|+||.+|++.+...|+ +..|+.||.++.
T Consensus 2 E~dRAR~IyeR~v~~hp~---~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE---VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC---chHHHHHHHhhc
Confidence 358999999999999887 468999998874
|
They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0062 Score=38.00 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+|..+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5666666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.2 Score=42.08 Aligned_cols=139 Identities=9% Similarity=0.003 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVP-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
-..++.++...|++.-...++.+.++.+ |..+ .+...++++.++.|+.+.|...|++.-+....-. -.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p----~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~-~~------ 248 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP----QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD-GL------ 248 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-cc------
Confidence 3445666667788888888888888875 4444 7777888888888888888888876543221100 00
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
.......... ..-..+.+++-.|...|.+++..+|.+ +.
T Consensus 249 ------q~~~~V~~n~---------------------------------a~i~lg~nn~a~a~r~~~~i~~~D~~~--~~ 287 (366)
T KOG2796|consen 249 ------QGKIMVLMNS---------------------------------AFLHLGQNNFAEAHRFFTEILRMDPRN--AV 287 (366)
T ss_pred ------chhHHHHhhh---------------------------------hhheecccchHHHHHHHhhccccCCCc--hh
Confidence 0000000000 000113456788888888888888887 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
.....|-+.+-.|+..+|++..+.++...|..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 66777777778888888888888888888875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.052 Score=55.69 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChH
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKIT 123 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 123 (703)
.+..+..+.-.+||+++|++.+.|+.+++-. .....+|..+|+++++....+.. ........|..-
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEe----------A~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~ 247 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEE----------ASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFW 247 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccccc----------ccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchh
Confidence 5567777888999999999999999887531 23478899999999987543211 111111122111
Q ss_pred HHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-----HHHHHHHhcCCHHHHHHHHHH
Q psy6461 124 QTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-----DYIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 124 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~A~~~~~~ 198 (703)
+ ....| +.+....+-..++.+..+.|+.++|++.++..++.+|.... .++..+...+++.++.+++.+
T Consensus 248 e--~~~~R-----dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 E--AWHRR-----DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred h--hhhcc-----ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 11111 11112233345677777889999999999999988876322 346777889999999888876
Q ss_pred h
Q psy6461 199 I 199 (703)
Q Consensus 199 ~ 199 (703)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 4
|
The molecular function of this protein is uncertain. |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.31 Score=47.37 Aligned_cols=152 Identities=10% Similarity=-0.030 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-cCcchHHHHHHHHHHHH-HHhcCch
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA-VLPEEMFEMFNIYIKKA-AEIYGIP 605 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~-~~~~~~~ 605 (703)
+.|+..+|-...++.++..|.+. ..|-.--..+...|+-..-+..+++.+-. +|+-+......+...|. ...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhh--hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677888888999999999883 34544445555678888888888888876 44432222223333333 4578889
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHH--HHHHHHHHcCCHHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWA--AWKSFEITHGNEDTMREML 683 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~ 683 (703)
+|.+.-.++++++|.+.= .....++++.-.|+++++..+..+--..=.........+ +++-|.-..+.++.+.+++
T Consensus 193 dAEk~A~ralqiN~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCCCcchH--HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999999887643 445677788888888888888765422211111222222 3445555557777777776
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.28 Score=45.58 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=52.3
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHHHHHcC
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV--PYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
++++|+.+|.+++..+........-..++-..+..+.+...+.+|-..+.+-... ...+.......+...+-+++...
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~ 204 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH 204 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH
Confidence 4455566666555543332222222344555566666677777766666543222 11111122356777777777778
Q ss_pred CHHHHHHHHHHHhcCC
Q psy6461 445 QEEAALRLMARATATP 460 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~ 460 (703)
++..|...++..-+++
T Consensus 205 Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 205 DYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHhcchhcCc
Confidence 8889988888766554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.014 Score=36.41 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.+|...|.++...|++++|...|+++|+.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56778888888888888888888888888773
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.16 Score=44.76 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+......|+++.|..+.++++..+|-+.. +|..+...+...|+...|...|+++.+.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~--~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEE--AYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3444445567788888888888888887655 7777788888888888888888877554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.24 Score=48.10 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=110.9
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHh-CCcc-cccccHHHHHHHHHhcCChHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRA-LPIT-QHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.|++.+|...+++.++..|.+.-.|.---..++-.|+.+.-+..+++.+-. +|+- -...+.-.|+-.+.+.|-+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 378888999999999999999888877777777889999999999988765 4421 11233344555566789999999
Q ss_pred HHHHHHHhhCCCCHHH---HHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHH
Q psy6461 163 RVFRRYLKLFPEDAED---YIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAI 239 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 239 (703)
+.-+++++++|.+.-+ ....+...|+.+++.+...+-- ..|.+ ...+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te--------------d~Wr~-s~ml--------------- 245 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE--------------DDWRQ-SWML--------------- 245 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc--------------cchhh-hhHH---------------
Confidence 9999999999988542 2345667889988877654321 11221 0000
Q ss_pred HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 240 IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
....|-..+.++++.+.++.|..+|++-+-
T Consensus 246 -----------asHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 246 -----------ASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred -----------HhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 023455678888889999999999998554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.82 Score=44.09 Aligned_cols=131 Identities=16% Similarity=0.025 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQA 475 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 475 (703)
+.-+.-....|++..|...|..++...|.+. .+-..|++.+...|+.+.|..++...-......
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~------------ 201 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAALPLQAQDK------------ 201 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhCcccchhh------------
Confidence 3334455578999999999999999999886 889999999999999999999987633333221
Q ss_pred HHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH
Q psy6461 476 RVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 555 (703)
........+.++.+.... ++. ..+++.+..+|++ ...-
T Consensus 202 ----~~~~l~a~i~ll~qaa~~-----------------------------------~~~-~~l~~~~aadPdd--~~aa 239 (304)
T COG3118 202 ----AAHGLQAQIELLEQAAAT-----------------------------------PEI-QDLQRRLAADPDD--VEAA 239 (304)
T ss_pred ----HHHHHHHHHHHHHHHhcC-----------------------------------CCH-HHHHHHHHhCCCC--HHHH
Confidence 011111222232222211 222 3456667889998 6799
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 556 LLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 556 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
+.++..+...|+.+.|...+-..++.+-.
T Consensus 240 ~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 240 LALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 99999999999999998887777766543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.96 Score=48.44 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch---HHHHHHHHHHHHHHhcCchH
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE---MFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~ 606 (703)
...+.|.++++...+..|+. ....+.-|+++...|+.++|+..|++++.....-. ...+|.... ...-..++++
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s--~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w-~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNS--ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAW-CHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHH-HHHHHchHHH
Confidence 45689999999999999997 56778889999999999999999999985332211 122232211 1223579999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhcc
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEI-------DRARAIYAHCSQI 653 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~-------~~A~~~~~~a~~~ 653 (703)
|...|.+.++....+.. ......|-++...|+. ++|...+.++-..
T Consensus 324 A~~~f~~L~~~s~WSka-~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKA-FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHH-HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999998776543 2344456677888888 8888888877543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=95.84 E-value=7.3 Score=48.41 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=166.4
Q ss_pred HHHHHHHhhhc--CCchhHHHHHHHHHHhcCCC-ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHH
Q psy6461 355 LEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPK-LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431 (703)
Q Consensus 355 ~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 431 (703)
+.|..+.+... ....+-+-.+++++....-. ........+|+.+|++....|.++.|....-.|.+..+ + +
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~----~ 1703 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--P----E 1703 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--c----h
Confidence 55666665443 22344444555555442111 22345788999999999999999999999988877643 2 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCC-CCCcccccchhhHH-HHHHhhHHHHHHHHHHHHhcCCh------hHHHhH
Q psy6461 432 VWCEWAELELRAGQEEAALRLMARATATP-ARPVAYHDEAETVQ-ARVYKSIKLWSLYADLEESFGTF------KAYEKG 503 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~e~a 503 (703)
++...|.++.+.|+-..|+.++++.++.+ |+....+.+....+ ..+++ .+...+....+..+++ +.|..+
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~--~~~L~~~~~~~es~n~~s~~ilk~Y~~~ 1781 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFK--KAKLKITKYLEESGNFESKDILKYYHDA 1781 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhh--hHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 89999999999999999999999999654 33221111110000 11111 2333444445555555 778888
Q ss_pred hhcCCCCc--hHHHHHHHHHHHHHHh------CCCChhH---HHHHHHHHHHhCCCcc----h--HHHHHHHHHHHHH--
Q psy6461 504 IALFKWPY--IFDIWNTYLTKFLSRY------GGTKLER---ARDLFEQCLEACPPRY----A--KTLYLLYAKLEEE-- 564 (703)
Q Consensus 504 l~~~~~~~--~~~~~~~y~~~~~~~~------~~~~~~~---A~~~~~~al~~~p~~~----~--~~~~~~~a~~~~~-- 564 (703)
.+..|.-. ++.+- .|..+++... ..|++.. +...|.+++.....+. + ..+|+.++-....
T Consensus 1782 ~ail~ewe~~hy~l~-~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~e 1860 (2382)
T KOG0890|consen 1782 KAILPEWEDKHYHLG-KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVE 1860 (2382)
T ss_pred HHHcccccCceeeHH-HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccc
Confidence 88876322 22222 3444444443 2344444 4444557776543331 0 2578776433322
Q ss_pred --------cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh-cCchHHHHHHHHHH----HhCCCcchHHHHHHHH
Q psy6461 565 --------HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI-YGIPKTRQIYERAI----ESLPEEPTRQMCLKFA 631 (703)
Q Consensus 565 --------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al----~~~p~~~~~~~~~~~a 631 (703)
.++.....+..+.++...|. ...+.+|-++..+. ...++.-.+..+.+ ...|... +|...|
T Consensus 1861 k~~r~ei~s~~~~~in~~i~~~~~~lp~---Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~---lW~~~a 1934 (2382)
T KOG0890|consen 1861 KAPRGEIVSKNLKLINSLIEEALEHLPT---YQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQT---LWQSAA 1934 (2382)
T ss_pred cCChhhhhhhhHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHH---HHHHHH
Confidence 23344555666777777786 34556677766653 34455555555544 4567532 788877
Q ss_pred HHHHHc-CCHHHHHHHHHHHhcc
Q psy6461 632 EMETKL-GEIDRARAIYAHCSQI 653 (703)
Q Consensus 632 ~~~~~~-g~~~~A~~~~~~a~~~ 653 (703)
.+=... ...+++..++.++..+
T Consensus 1935 ~~kS~~p~R~~R~keIL~k~~~~ 1957 (2382)
T KOG0890|consen 1935 LSKSNVPSRVERCKEILTKSRRQ 1957 (2382)
T ss_pred HHhcccHHHHHHHHHHHHHHHhc
Confidence 652221 2466788888888776
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.11 Score=46.44 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
.-+.++..+...|++++|...++.++.. |.+..-..-+-+.++++..+.|++++|+..++......-.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~----------- 158 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA----------- 158 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-----------
Confidence 4466788888999999999999999876 3332122356788899999999999999998753332211
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
..+-...++++...|+ -++||..|++++...++.
T Consensus 159 -------~~~~elrGDill~kg~-----------------------------------k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 159 -------AIVAELRGDILLAKGD-----------------------------------KQEARAAYEKALESDASP 192 (207)
T ss_pred -------HHHHHHhhhHHHHcCc-----------------------------------hHHHHHHHHHHHHccCCh
Confidence 2333444555555554 499999999999998654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.9 Score=43.86 Aligned_cols=91 Identities=8% Similarity=-0.013 Sum_probs=65.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH---cCChHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV---NDQLEDARLIFDKATLV-PYTKVEDLATVWCEWAELEL 441 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~ 441 (703)
.+++..++..+. +...|.+. ....+.+-..||-.+-+ .|+.++|+.++..++.. .+.++ +.+...|+++-
T Consensus 155 qdydamI~Lve~-l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~----d~~gL~GRIyK 228 (374)
T PF13281_consen 155 QDYDAMIKLVET-LEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP----DTLGLLGRIYK 228 (374)
T ss_pred hhHHHHHHHHHH-hhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh----HHHHHHHHHHH
Confidence 566767776664 33333222 33456778888888887 89999999999995554 44554 77788887763
Q ss_pred H---------cCCHHHHHHHHHHHhcCCCC
Q psy6461 442 R---------AGQEEAALRLMARATATPAR 462 (703)
Q Consensus 442 ~---------~~~~~~A~~~~~~a~~~~p~ 462 (703)
. ....++|+..|.++.+..|+
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3 22478899999999999976
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.19 Score=39.67 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
....+++.+..+|+++...+.++..++..|+++.|...+-..++.+|.......-..+..+....|..+.....|++-|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999865445555666666666665554555555433
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.4 Score=45.21 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhcc---------CCCCcch-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLV---------PYTKVED-----LATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
-+|.++|-++.+.|.+..+..+|.+|++. .|..... -.++.+..+-.++..|++-.|.+.|.++++
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 44555666666666666666666666541 0100000 124555555556666666666666666665
Q ss_pred CCCC
Q psy6461 459 TPAR 462 (703)
Q Consensus 459 ~~p~ 462 (703)
.+..
T Consensus 364 vfh~ 367 (696)
T KOG2471|consen 364 VFHR 367 (696)
T ss_pred HHhc
Confidence 5443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.027 Score=35.02 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
+|+.+|.++...|++++|...|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566677777777777777777777776655
|
... |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.027 Score=54.70 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
..|.++.|++.|..++.++|.. ..++..-+.++.+.++...|++-+..|+.++|+.+...-|.+|.... +|++.+|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~--a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl--lg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPL--AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL--LGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCch--hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH--hhchHHH
Confidence 4677899999999999999998 67899999999999999999999999999999988777888887765 6799999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 608 RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+..+..+.+.+-+-. ...|+. .+.-+.+..++=+..|+++.+.
T Consensus 202 a~dl~~a~kld~dE~-~~a~lK--eV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA-NSATLK--EVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhccccHH-HHHHHH--HhccchhhhhhchhHHHHHHHH
Confidence 999999999865422 223332 3444566677777777777653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.8 Score=41.42 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=57.0
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
.....|+.++++..+.|.++.|...+.++....+........+.+.++.+....|+..+|...++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998864222111227888999999999999999999998887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.89 Score=40.97 Aligned_cols=118 Identities=16% Similarity=0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHHHhcCchHHHHHH
Q psy6461 534 RARDLFEQCLEACPPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAAEIYGIPKTRQIY 611 (703)
Q Consensus 534 ~A~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (703)
+.....++....+|.. .....-+..+..+...|++++|...++.++....+.. ...+-.-......+.|.+|.|..+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5556666666666554 2345567778888889999999999999987654431 1112222333445578888888766
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 612 ERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
...-.. +-...+-...++++...|+.++||.-|++|+++.
T Consensus 150 ~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 543221 1122245567899999999999999999999985
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.7 Score=41.14 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=38.1
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
..+.++|+.-|++.+...+...+=-.....+.+.+.++.+++++-...|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 347888999999988887654321124556677778888888888887776553
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.029 Score=57.21 Aligned_cols=99 Identities=8% Similarity=0.059 Sum_probs=77.3
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.++|+.|.-.|-+|++.+|++..+|-..+...+. .+++..|...+.+|++.+|.....++.-|...+..+.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK--------~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK--------VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee--------echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 5788888888889999888888887666533322 26788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
.+|...|+......|. .+.+-..+.++
T Consensus 89 ~~A~~~l~~~~~l~Pn--d~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPN--DPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhcCcC--cHHHHHHHHHH
Confidence 8888888888888883 45665555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.5 Score=47.00 Aligned_cols=157 Identities=17% Similarity=0.056 Sum_probs=103.9
Q ss_pred cCchhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcccCCC---CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy6461 43 NAPKAIINTIYERSLKELP-GSYKLWYNYLKLRRKQVKGKVI---TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 118 (703)
.||.+.....+.++.+..- +++-.-+.++-++.- +...+. .....+.|.++++...+..|++.-.....|+++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~-~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLV-VPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-HHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 5899999999999877322 222111111111111 111111 24568889999999999999988888888999999
Q ss_pred ccChHHHHHHHHHHHHhCCc-cc-ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH--HH--HHHhcCCH---
Q psy6461 119 QHKITQTRHVFDRALRALPI-TQ-HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY--IE--YLSSIERL--- 189 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~-~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~--~~--~~~~~~~~--- 189 (703)
.|++++|...|++++..... .+ ....+..++-++..+.++++|...|.+.++.+.-+...| +. .+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 99999999999998852221 01 122233334455568899999999999998776654432 22 23566776
Q ss_pred ----HHHHHHHHHhh
Q psy6461 190 ----DEAAVKLAYIV 200 (703)
Q Consensus 190 ----~~A~~~~~~~~ 200 (703)
++|...+.++.
T Consensus 360 ~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 360 KEHKKEAEELFRKVP 374 (468)
T ss_pred hhhHHHHHHHHHHHH
Confidence 77777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.069 Score=32.74 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778899999999999999999999999886
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.059 Score=33.42 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
.+|..+|.++...|++++|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 47888899999999999999999999888873
|
... |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.88 Score=42.35 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred cCchhHHHHHHHHHHh--------hCCCCHH----------HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 43 NAPKAIINTIYERSLK--------ELPGSYK----------LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~--------~~P~~~~----------~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.|++.+|...|..|+. .-|.+++ +.++|+++++. .|++-++.......|+..|+
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~--------~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK--------KEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh--------HHHHHHHHHHHHHHHhcCCc
Confidence 4788888888887763 4455543 22233333222 14455555555555555555
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
|..+++.-+......=+.++|+.-|.++|+.+|
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 555555555544444455555555555555555
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.9 Score=40.99 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=57.5
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
|..|.+.+++..|+..|.++|+....++.....+|..-+...+..|++-.|+.-..+|+..+|.+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 67778888999999999999998777766667889999999889999999999999999999986
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=94.38 E-value=19 Score=45.10 Aligned_cols=281 Identities=15% Similarity=0.158 Sum_probs=145.2
Q ss_pred cCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhc---cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 382 VDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL---VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 382 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
..+........+-|-+....-....+..+-+-.+++++- ..|+.-....++|+.+|++...+|+++.|...+-+|.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 334333333445666554433333334444444555422 23433345679999999999999999999999998888
Q ss_pred CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh----hHHHhHhh-cCCC--------Cc--hHHHHH---HHH
Q psy6461 459 TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIA-LFKW--------PY--IFDIWN---TYL 520 (703)
Q Consensus 459 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~al~-~~~~--------~~--~~~~~~---~y~ 520 (703)
..+ +.+....+.++...|+. .++++.++ .++. |. +..+-. -.+
T Consensus 1699 ~r~-------------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~ 1759 (2382)
T KOG0890|consen 1699 SRL-------------------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKI 1759 (2382)
T ss_pred ccc-------------------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHH
Confidence 774 46788888888888775 55566664 3332 11 111111 111
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH------------cCChHH---HHHHHHHHhhccCcc
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE------------HGLARH---AMAVYERATGAVLPE 585 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~------------~g~~~~---A~~~~~~al~~~p~~ 585 (703)
..+.+.-+....+.....|..+.+..|.... -+..+|.++.+ .|++.. ++-.|.+++.....+
T Consensus 1760 ~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~--~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~ 1837 (2382)
T KOG0890|consen 1760 TKYLEESGNFESKDILKYYHDAKAILPEWED--KHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQH 1837 (2382)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHcccccC--ceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchh
Confidence 1222322334556677788888888775422 33344433321 344444 333445666655544
Q ss_pred h---HHHHHHHHHHHHH-------------HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy6461 586 E---MFEMFNIYIKKAA-------------EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG-EIDRARAIYA 648 (703)
Q Consensus 586 ~---~~~~~~~~~~~~~-------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~ 648 (703)
. .+.+...|+++-. ..++....-.+.+.+++..|- ...+..|..+..+.- ..++.-.++.
T Consensus 1838 iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~---Y~f~ta~sQLlSRicH~~~dV~~vl~ 1914 (2382)
T KOG0890|consen 1838 LYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT---YQFYTAYSQLLSRICHPNQDVARVLK 1914 (2382)
T ss_pred HHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 2 2334444555310 011222333445556666663 224556666665533 3444555555
Q ss_pred HHhccc---CCCCChHhHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q psy6461 649 HCSQIC---DPRVTAGFWAAWKSFEITH-GNEDTMREMLRIKRS 688 (703)
Q Consensus 649 ~a~~~~---~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 688 (703)
+.+... =| ...+|.-.+.+-... -..+..++++++++.
T Consensus 1915 ~II~~l~~~YP--qq~lW~~~a~~kS~~p~R~~R~keIL~k~~~ 1956 (2382)
T KOG0890|consen 1915 HIIAKLVLAYP--QQTLWQSAALSKSNVPSRVERCKEILTKSRR 1956 (2382)
T ss_pred HHHHHHHHhCc--hHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 544321 12 255666655544333 123444444444433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.058 Score=33.10 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677777777777777777777776665
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.29 Score=45.45 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHHHHh--------cCCCH----------HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHH
Q psy6461 85 DPSYEDVNNTFERSLVF--------MHKMP----------RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWP 146 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 146 (703)
.|++.+|..-|..|+.. -|.+| .+.++|.+++...|++-++.......|+..|. +..++.
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~--nvKA~f 268 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG--NVKAYF 268 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--hHHHHH
Confidence 46777777777777644 25443 56677778888888888888888888888883 456666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 147 LYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 147 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
.-+......=+..+|..-|.++|+.+|.-..
T Consensus 269 rRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 269 RRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 5566555555567777888888888776543
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.027 Score=54.77 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
+.|.++.|+..|-+++..+|.+..++...+.++++.++...|.+-+..|+.++|++....-|..+++- ..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r--llg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER--LLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH--HhhchHHHHH
Confidence 35889999999999999999999999999999999999999999999999999976555556666555 6788999999
Q ss_pred HHHHHHhhCCC
Q psy6461 164 VFRRYLKLFPE 174 (703)
Q Consensus 164 ~~~~~l~~~p~ 174 (703)
.|..+++++-+
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 99999887643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.11 Score=32.71 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhh
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQT 281 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 281 (703)
+|..+|.+|.+.|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3788999999999999999999996653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.10 E-value=8 Score=39.75 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-CCC--
Q psy6461 350 NPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-PYT-- 424 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~-- 424 (703)
.......|+..+.+.. |.++.|...+.++....++.. ...+.+.+.++++.+..|+..+|+..++..++. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 3456778888888765 899999999988776432211 114668899999999999999999999888871 110
Q ss_pred ---------------------------CcchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 425 ---------------------------KVEDLATVWCEWAELELRA------GQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 425 ---------------------------~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
.......++..+|.+.... +..+++...|..+++.+|..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------- 291 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-------- 291 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH--------
Confidence 1122357788888887777 88999999999999999973
Q ss_pred hHHHHHHhhHHHHHHHHHHHHh
Q psy6461 472 TVQARVYKSIKLWSLYADLEES 493 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (703)
...|..++.+...
T Consensus 292 ---------~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 292 ---------EKAWHSWALFNDK 304 (352)
T ss_pred ---------HHHHHHHHHHHHH
Confidence 6788888776543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.12 Score=49.48 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=56.6
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
.-....|+.++|.++|+-||...| .++++...++.|....++.-+|..+|-+++...|.+.++++.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP--~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAP--TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCC--CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 334557999999999999999999 568999999999888888889999999999999999876543
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.17 Score=48.46 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=63.5
Q ss_pred hcCCCCh-HHHHHH---HHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHH
Q psy6461 25 LRNPFSV-KHWLRY---IEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100 (703)
Q Consensus 25 ~~~P~~~-~~w~~~---~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 100 (703)
+.+|... ++-..+ .+...+|+.++|..+|+.|+...|.++++.+.+..+.... +++-+|-..|-+|+.
T Consensus 107 e~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~--------~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 107 ENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH--------NEIVEADQCYVKALT 178 (472)
T ss_pred ccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh--------hhhHhhhhhhheeee
Confidence 5667655 333322 2344489999999999999999999999999999987543 678889999999999
Q ss_pred hcCCCHHHHHHHH
Q psy6461 101 FMHKMPRIWLDYG 113 (703)
Q Consensus 101 ~~p~~~~~~~~~~ 113 (703)
+.|.+..+..+..
T Consensus 179 isP~nseALvnR~ 191 (472)
T KOG3824|consen 179 ISPGNSEALVNRA 191 (472)
T ss_pred eCCCchHHHhhhh
Confidence 9999987765443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.4 Score=43.49 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=91.0
Q ss_pred hHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCC--------------------------CCHHHHHHHHH
Q psy6461 20 YEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELP--------------------------GSYKLWYNYLK 72 (703)
Q Consensus 20 ~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P--------------------------~~~~~w~~~~~ 72 (703)
+-..|+.+|..++..+++..... +|+.+.|....||||=.+- +|-.+|+.+-+
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 44567899999999999999999 9999998888888863221 34455555444
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH-HhccChHHHHHHHHHHHH--------hCCccccc
Q psy6461 73 LRRKQVKGKVITDPSYEDVNNTFERSLVFMHK-MPRIWLDYGRFL-MDQHKITQTRHVFDRALR--------ALPITQHH 142 (703)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~--------~~p~~~~~ 142 (703)
....... .|.+.-|.+..+-.++.+|. +|-.-...+..+ .+.++++--..+++.... ..|. -
T Consensus 109 ~i~~L~~-----RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~ 180 (360)
T PF04910_consen 109 YIQSLGR-----RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---F 180 (360)
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---H
Confidence 4333222 36788888888888888887 653333333333 234555555555555433 2331 1
Q ss_pred ccHHHHHHHHHhcCCh---------------HHHHHHHHHHHhhCCCCHH
Q psy6461 143 RVWPLYLSFVKSHAVP---------------ETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 143 ~~~~~~~~~~~~~~~~---------------~~A~~~~~~~l~~~p~~~~ 177 (703)
..-..++.+. .++. +.|...+.+++...|.-..
T Consensus 181 a~S~aLA~~~--l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 181 AFSIALAYFR--LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHHHHH--hcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 1111223332 2333 6788888888888877643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=93.43 E-value=11 Score=39.10 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=112.1
Q ss_pred hhcCCchhHHHHHHHHHHhcC--CC--ccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVD--PK--LAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAE 438 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~--~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 438 (703)
+..|+..+|+.....+.+-.. |. ......+++...+|.+...-|-++.|...|..|++.- ++.+-...+-..++-
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAI 412 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHH
Confidence 334777777766655544321 21 1112346777777877778899999999999999873 232222445667788
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHH
Q psy6461 439 LELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNT 518 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~ 518 (703)
.|++.|+.+.-.++++..-..+... +..+ .. -..+++.++-+...
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s--~ssq----~l----~a~~~~v~glfaf~------------------------- 457 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNS--LSSQ----RL----EASILYVYGLFAFK------------------------- 457 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCc--chHH----HH----HHHHHHHHHHHHHH-------------------------
Confidence 8999998888777777633222221 1000 00 01223333333332
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCCC-c---chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---CcchHHHHH
Q psy6461 519 YLTKFLSRYGGTKLERARDLFEQCLEACPP-R---YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV---LPEEMFEMF 591 (703)
Q Consensus 519 y~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 591 (703)
.+++.+|+..+.+.++.... + ...-....++.+....|+-.+++.+..-+++.. |+ -.+.+|
T Consensus 458 ----------qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D-i~vqLw 526 (629)
T KOG2300|consen 458 ----------QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD-IPVQLW 526 (629)
T ss_pred ----------hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC-chHHHH
Confidence 34568999999988886421 1 112356778888889999999999888887643 33 345666
Q ss_pred HH
Q psy6461 592 NI 593 (703)
Q Consensus 592 ~~ 593 (703)
..
T Consensus 527 s~ 528 (629)
T KOG2300|consen 527 SS 528 (629)
T ss_pred HH
Confidence 53
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.17 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
.|..+|.++...|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999996543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.88 E-value=11 Score=37.40 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCchhHHHHHHHHHHhc---CCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccC----C---CCcc---hHHH
Q psy6461 366 GKPLDIIRTYTEAVKTV---DPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVP----Y---TKVE---DLAT 431 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~---~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~----~---~~~~---~~~~ 431 (703)
|+.+.|...|.++-... +|.. .....++.+..|......+ +++.|...++++.... . .+++ --..
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~-~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDM-AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 88899999999986643 2221 1234677888888888888 9999999999987772 1 1111 1134
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCC
Q psy6461 432 VWCEWAELELRAGQE---EAALRLMARATATPARP 463 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~p~~ 463 (703)
+...++..++..+.. ++|..+++.+....|+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~ 120 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK 120 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence 566677777776554 45666666666666663
|
It is also involved in sporulation []. |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=92.65 E-value=8.9 Score=36.45 Aligned_cols=127 Identities=11% Similarity=0.133 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC----
Q psy6461 30 SVKHWLRYIEHKK--NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH---- 103 (703)
Q Consensus 30 ~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---- 103 (703)
+++.=.+|-..-. ..+++.|.+.|++.++..|+-.+.-...+ .++.+.+...+++++....|.+.+....
T Consensus 25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKAL----KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKAL----KQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHH----HHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433322 67899999999999999987665333322 2334444455788888888777765421
Q ss_pred --CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHH----HHHHHHhcCChHH
Q psy6461 104 --KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL----YLSFVKSHAVPET 160 (703)
Q Consensus 104 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~----~~~~~~~~~~~~~ 160 (703)
.+...-.....+.....+.+--...|+..|....+..+..+|.. ++.++...+++.+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~k 163 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTK 163 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHH
Confidence 12222233333333455666677777776665443345677754 3444444444433
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.16 Score=52.05 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
.+.++.|..+|-+|+..+|++..+|-+-+..+.+.+++..|..=+.+|++.+|. ....+..-+......+.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT--YIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch--hhheeeeccHHHHhHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999994 456666666777788888999999
Q ss_pred HHHHHhhCCCCHHH
Q psy6461 165 FRRYLKLFPEDAED 178 (703)
Q Consensus 165 ~~~~l~~~p~~~~~ 178 (703)
|+......|+...+
T Consensus 95 l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 95 LEKVKKLAPNDPDA 108 (476)
T ss_pred HHHhhhcCcCcHHH
Confidence 99999999999754
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=92.57 E-value=9.8 Score=36.20 Aligned_cols=227 Identities=9% Similarity=0.045 Sum_probs=139.6
Q ss_pred HHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhh
Q psy6461 402 YEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 480 (703)
+.+...-.+|.++-+.++.++|-+. .+|.---.++.. ..+..+-+..+++.++-+|++
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN----------------- 111 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANY----TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN----------------- 111 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----------------
Confidence 3345667899999999999999876 666544333322 345778889999999999985
Q ss_pred HHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 481 IKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE-RARDLFEQCLEACPPRYAKTLYLLYA 559 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~a 559 (703)
-++|...-.+.+..|+. . +-....+.++..+.++ ..+|..--
T Consensus 112 YQvWHHRr~ive~l~d~-----------------------------------s~rELef~~~~l~~DaKN--YHaWshRq 154 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDP-----------------------------------SFRELEFTKLMLDDDAKN--YHAWSHRQ 154 (318)
T ss_pred hhHHHHHHHHHHHhcCc-----------------------------------ccchHHHHHHHHhccccc--hhhhHHHH
Confidence 78888776666655553 2 4556677777777777 45777777
Q ss_pred HHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 560 KLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG-----IPKTRQIYERAIESLPEEPTRQMCLKFAEME 634 (703)
Q Consensus 560 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (703)
.+....|.++.-++.....++.+--+.+.+...-|.-... .|- .++-.......+...|++.. .|..+.-++
T Consensus 155 W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~-~~~~~~~~le~El~yt~~~I~~vP~NeS--aWnYL~G~l 231 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT-KGVISKAELERELNYTKDKILLVPNNES--AWNYLKGLL 231 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec-cCCccHHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHH
Confidence 7777788888888888888877655543333322221111 112 22334566677888999887 798887777
Q ss_pred HH-cC--CHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH------cCCHHHHHHHHHHHHHHH
Q psy6461 635 TK-LG--EIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT------HGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 635 ~~-~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~ 690 (703)
.. .| ...+......... ...+...+.+.....++... .+..+-+.++...+..++
T Consensus 232 ~~d~gl~s~s~vv~f~~~l~-~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La 295 (318)
T KOG0530|consen 232 ELDSGLSSDSKVVSFVENLY-LQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLA 295 (318)
T ss_pred HhccCCcCCchHHHHHHHHh-hccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 75 55 1222333322222 11233345555555555422 233333455555555555
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.7 Score=34.33 Aligned_cols=74 Identities=9% Similarity=-0.022 Sum_probs=51.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhccChHHHHH
Q psy6461 50 NTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM--PRIWLDYGRFLMDQHKITQTRH 127 (703)
Q Consensus 50 ~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~ 127 (703)
...+++.++.+|.+......++..+... |++++|...+-.+++.+|+. ......++.++...|.-+....
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~--------g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~ 79 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAA--------GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVS 79 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHT--------T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHH
Confidence 4678999999999999999999887764 99999999999999998754 4555566666655555443333
Q ss_pred HHHH
Q psy6461 128 VFDR 131 (703)
Q Consensus 128 ~~~~ 131 (703)
-|.|
T Consensus 80 ~~RR 83 (90)
T PF14561_consen 80 EYRR 83 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.52 E-value=4.8 Score=42.54 Aligned_cols=98 Identities=19% Similarity=0.274 Sum_probs=63.9
Q ss_pred hccChHHHHHHHH--HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHH
Q psy6461 118 DQHKITQTRHVFD--RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVK 195 (703)
Q Consensus 118 ~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~ 195 (703)
..++++++.+... +.+...| .......+.|+.++|.++.|..+ ..++..-..++...|+++.|...
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~----~~~~~~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP----KDQGQSIARFLEKKGYPELALQF--------VTDPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHH--------SS-HHHHHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC----hhHHHHHHHHHHHCCCHHHHHhh--------cCChHHHhHHHHhcCCHHHHHHH
Confidence 3577887766665 2233344 34467788999999988877655 22334567888899999988777
Q ss_pred HHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHH
Q psy6461 196 LAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIY 275 (703)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 275 (703)
..+. .....|..||+...++|+++-|...|
T Consensus 341 a~~~--------------------------------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 341 AKEL--------------------------------------------------DDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp CCCC--------------------------------------------------STHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHhc--------------------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4322 12358999999999999999999999
Q ss_pred HH
Q psy6461 276 EE 277 (703)
Q Consensus 276 ~~ 277 (703)
++
T Consensus 371 ~k 372 (443)
T PF04053_consen 371 QK 372 (443)
T ss_dssp HH
T ss_pred Hh
Confidence 88
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.24 Score=29.55 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
+|..+|.++...|+++.|...|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455566666666666666666666666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.21 Score=45.85 Aligned_cols=56 Identities=25% Similarity=0.339 Sum_probs=39.3
Q ss_pred HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 600 EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+.++.+.|.++|.++++..|+... -|..++.+..+.|+++.|-+-|++.+++.|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~--gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAA--GWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhh--hhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345666777777777777776554 67777777777777777777777777775444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.8 Score=35.61 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchH--HHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTR--QMC 627 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~--~~~ 627 (703)
..+..+|.++.+.|+.++|.+.|.++....... ....++...+...+..+++..+.....++-...-. +... .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 688999999999999999999999998876443 35677788888888889999999888888765322 1111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 628 LKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 628 ~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..-+-.....|++..|-..|-.+..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 33344445688999999888776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=91.56 E-value=9.1 Score=39.36 Aligned_cols=166 Identities=12% Similarity=0.042 Sum_probs=93.9
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH--HHhcCCh
Q psy6461 420 LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL--EESFGTF 497 (703)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 497 (703)
+.+|-++ ...++++.++.++|+.+.|.++++||+-.... .+...+..+ ....|..
T Consensus 34 ~~~PyHi----dtLlqls~v~~~~gd~~~A~~lleRALf~~e~-------------------~~~~~F~~~~~~~~~g~~ 90 (360)
T PF04910_consen 34 QKNPYHI----DTLLQLSEVYRQQGDHAQANDLLERALFAFER-------------------AFHPSFSPFRSNLTSGNC 90 (360)
T ss_pred HHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------------HHHHHhhhhhcccccCcc
Confidence 4478887 88899999999999999999999998754321 011111000 0111111
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH-HHcCChHHHHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE-EEHGLARHAMAVYE 576 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~ 576 (703)
-=-+..+.+..+|.............|-+..|.+..+-.+..+|.+. +..-+.+++++ .+.+.++=-+.+++
T Consensus 91 ------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~D-P~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 91 ------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDED-PLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred ------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC-cchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 00011122333333322211111124667899999999999999932 33444444443 46778877777777
Q ss_pred HHhhc--------cCcchHHHHHHHHHHHHHHhcCc---------------hHHHHHHHHHHHhCCC
Q psy6461 577 RATGA--------VLPEEMFEMFNIYIKKAAEIYGI---------------PKTRQIYERAIESLPE 620 (703)
Q Consensus 577 ~al~~--------~p~~~~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~al~~~p~ 620 (703)
..... .|+ +..-.+...+. .++- +.|....++|+..+|.
T Consensus 164 ~~~~~~~~~~~~~lPn---~a~S~aLA~~~--l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 164 SPLAKCYRNWLSLLPN---FAFSIALAYFR--LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hHhhhhhhhhhhhCcc---HHHHHHHHHHH--hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 65442 232 11112222222 3344 8999999999999884
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=91.29 E-value=25 Score=38.28 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q psy6461 102 MHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 133 (703)
+| +|++|..++......-.++.|...|-|.=
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 56 68999999998887778888888887753
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=91.21 E-value=32 Score=39.36 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
+..+.|...-+++ +.|.+|..++......|.+.+|...|-+|= +| ..+....+...+.|.+++-++.+
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyikad--Dp-----s~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DP-----SNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcC--Cc-----HHHHHHHHHHHhcCcHHHHHHHH
Confidence 4566666666655 568999999999999999999999998862 44 44788888888899999988888
Q ss_pred HHHHhh--CCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 166 RRYLKL--FPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 166 ~~~l~~--~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
.-+-+. .|.-...++-.+.++++..+-...+. |+..+. -.+.++- ...+.+++.+
T Consensus 1157 ~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~------------gpN~A~-i~~vGdr----------cf~~~~y~aA 1213 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRLTELEEFIA------------GPNVAN-IQQVGDR----------CFEEKMYEAA 1213 (1666)
T ss_pred HHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc------------CCCchh-HHHHhHH----------HhhhhhhHHH
Confidence 776654 34444456656667777765444331 110000 0000000 0011111111
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAI 279 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 279 (703)
.-.+ .....|..++.-+...|++..|...-+++-
T Consensus 1214 kl~y--~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1214 KLLY--SNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1001 123568888888899999988887777643
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.7 Score=33.40 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHH
Q psy6461 437 AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIW 516 (703)
Q Consensus 437 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~ 516 (703)
+.-+++.|+.-+|+++.+..+...+++.+ ...++..-+.+...+... -.+..+-
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~--------------~~~lh~~QG~if~~lA~~------------ten~d~k 56 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDES--------------SWLLHRLQGTIFYKLAKK------------TENPDVK 56 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCc--------------hHHHHHHHhHHHHHHHHh------------ccCchHH
Confidence 34457899999999999999988877510 123333334443332211 1233444
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 517 ~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
..|+ -.+.+.|.++....|.. +.+.+.+|+-.-....|+++..-.++++...
T Consensus 57 ~~yL------------l~sve~~s~a~~Lsp~~--A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 57 FRYL------------LGSVECFSRAVELSPDS--AHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHH------------HHhHHHHHHHhccChhH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 4454 46889999999999987 5677777776655667788888888877653
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=91.03 E-value=15 Score=35.08 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=86.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
..+..+|..+-+.++..+|.+..+|-=.-.. +..+. .+..+=...++..+..+|+|.++|-.---+....|+.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i-L~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVI-LRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHH-HHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence 5677889999999999999999999433222 22221 3466667888888888999999998776666666766
Q ss_pred H-HHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 123 T-QTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 123 ~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
. .-.....+++..+. .+-.+|..--=+....+.++.-...-...++.+--+-.+|-
T Consensus 129 s~rELef~~~~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred ccchHHHHHHHHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 6 55666777777555 45667766544444556666666666666666554444554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.97 E-value=2.9 Score=38.03 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCC
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTT 284 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 284 (703)
-..+..+|++|.+.|+.+.|.+.|.++...+.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 468899999999999999999999998876544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.4 Score=46.31 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.|+...|..++..|+...|.... ...+.+|++..+.|--..|-..+-+++.+.... +..+.....+...+++++.|.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se--pl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSE--PLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC--chHHHhcchhHHHHhhhHHHH
Confidence 57788899999999988887532 357788888888888888888888888877433 445555666666677899999
Q ss_pred HHHHHHHHhCCCcchHH
Q psy6461 609 QIYERAIESLPEEPTRQ 625 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~ 625 (703)
+.|.+|+++.|+++..+
T Consensus 697 ~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECE 713 (886)
T ss_pred HHHHHHHhcCCCChhhH
Confidence 99999999999887644
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.35 Score=44.42 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=36.9
Q ss_pred HHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 116 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
....++.+.+..+|.++|...| .....|...+.+..+.|+.+.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap--~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAP--EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCc--hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3445566666666666666666 3455666666666666666666666666666666653
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.51 Score=27.98 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
..|..++.++...++++.|...|+++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4566667777777777777777777776665
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.89 E-value=38 Score=37.97 Aligned_cols=165 Identities=8% Similarity=0.052 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHhh--cCchhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-
Q psy6461 30 SVKHWLRYIEHKK--NAPKAIINTIYERSLKELPG--SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK- 104 (703)
Q Consensus 30 ~~~~w~~~~~~~~--~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 104 (703)
.....++++..+. ..+++.|+..++|++..... -.++ .-.+.+.+..+.. ..+...|....++++...-.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~-k~~~~~ll~~i~~----~~~~~~a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL-KFRCQFLLARIYF----KTNPKAALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhcc
Confidence 3456677787766 78999999999999887754 2222 1111222211111 12233499999999888533
Q ss_pred CHHHHHHHHHHH-----HhccChHHHHHHHHHHHHhCCccccccc--HHHH--HHHHHhcCChHHHHHHHHHHHhh----
Q psy6461 105 MPRIWLDYGRFL-----MDQHKITQTRHVFDRALRALPITQHHRV--WPLY--LSFVKSHAVPETAVRVFRRYLKL---- 171 (703)
Q Consensus 105 ~~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~~~--~~~~~~~~~~~~A~~~~~~~l~~---- 171 (703)
....|.-..+++ ...++...|...++.+....-....+.+ ...+ +.+....+.++.+++.++++...
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 234444443333 2236899999999998885421112222 1222 22233456677787777766332
Q ss_pred --CCCC----HHHHH---HH--HHhcCCHHHHHHHHHHh
Q psy6461 172 --FPED----AEDYI---EY--LSSIERLDEAAVKLAYI 199 (703)
Q Consensus 172 --~p~~----~~~~~---~~--~~~~~~~~~A~~~~~~~ 199 (703)
+|.. ...|. ++ ....|+++.+...++.+
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 11232 33 25678877777666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.61 E-value=3.1 Score=39.08 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHhcCCCc-cCCchhHHHHHHHHHHHHcCC-------hHHHHHHHHHhhccC--CCCcchHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL-AVGKLHTLWIEFGKFYEVNDQ-------LEDARLIFDKATLVP--YTKVEDLATVWCE 435 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 435 (703)
.+.+.|+..|.-|+-...-.. .+.....+++.+|=+|...|+ +..|...|++++... |.....-..+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 456778888887765411110 111345678887777777776 466778888887763 2222223467788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 436 WAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 436 ~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
+|.+..+.|++++|...|.+.+.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 899999999999999999999987654
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=89.13 E-value=37 Score=36.77 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCchHHHHHHHHH
Q psy6461 255 WNSLADYYIRSGLFERARDIYEE 277 (703)
Q Consensus 255 ~~~l~~~~~~~~~~~~A~~~~~~ 277 (703)
|..++.--...-+++-|++.|.+
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~r 610 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIR 610 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Confidence 55555555555555555555555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.78 E-value=36 Score=36.17 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=72.9
Q ss_pred HhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 361 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
..+..++++.+....+.. .+-|.. ..+.....+.++.++|-.+.|..+- +++ ...+.++
T Consensus 270 ~av~~~d~~~v~~~i~~~--~ll~~i----~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~----~~rFeLA--- 328 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS--NLLPNI----PKDQGQSIARFLEKKGYPELALQFV--------TDP----DHRFELA--- 328 (443)
T ss_dssp HHHHTT-HHH-----HHH--HTGGG------HHHHHHHHHHHHHTT-HHHHHHHS--------S-H----HHHHHHH---
T ss_pred HHHHcCChhhhhhhhhhh--hhcccC----ChhHHHHHHHHHHHCCCHHHHHhhc--------CCh----HHHhHHH---
Confidence 334446766665554311 111111 1234567778888888777776652 222 4444444
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
++.|+++.|.++.+. . + ++..|...++....+|++
T Consensus 329 l~lg~L~~A~~~a~~---~--~-----------------~~~~W~~Lg~~AL~~g~~----------------------- 363 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE---L--D-----------------DPEKWKQLGDEALRQGNI----------------------- 363 (443)
T ss_dssp HHCT-HHHHHHHCCC---C--S-----------------THHHHHHHHHHHHHTTBH-----------------------
T ss_pred HhcCCHHHHHHHHHh---c--C-----------------cHHHHHHHHHHHHHcCCH-----------------------
Confidence 578888888776421 1 1 267888888888877776
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
+-|..+|+++- + +-.+.-++...|+.++-.++.+.|......+
T Consensus 364 ------------~lAe~c~~k~~----d------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 364 ------------ELAEECYQKAK----D------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN 406 (443)
T ss_dssp ------------HHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH
T ss_pred ------------HHHHHHHHhhc----C------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH
Confidence 66666666532 2 2233344556788777777777766655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.5 Score=41.37 Aligned_cols=99 Identities=10% Similarity=-0.018 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
.-+-.=|+.+.+.++|..|+..|..+++....+. ...+|..-.....-.|++.+|..=..++++..|.+. ..++.=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhh
Confidence 3444445555566666666666666665543332 112333333333334566666666666666666543 244444
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
|.+......++.|.++.+..+++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 55555555555555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.37 E-value=20 Score=31.63 Aligned_cols=66 Identities=17% Similarity=0.015 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
..+.....-...++.+.+..++.-.-...|+.+ ++-+.-+.+.++.|++.+|+.+|+......|..
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~----e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP----ELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 344444555567899999999998877789887 777788888899999999999999988887763
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=87.23 E-value=20 Score=38.19 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=93.0
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhh-----CC----------------CCHHHHHHHHHHHHHhcccCCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKE-----LP----------------GSYKLWYNYLKLRRKQVKGKVI 83 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~-----~P----------------~~~~~w~~~~~~~~~~~~~~~~ 83 (703)
-+|..++..+.++.+.. +|+.+-+..+.+|+|=. .| .+-.+.+.+-+.......
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~---- 354 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQ---- 354 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHh----
Confidence 46889999999999999 99988877777776632 12 222333322222221111
Q ss_pred CchhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-hccChHHHHHHHHHH-----HHhCCcccccccHHHHHHHHHhcC
Q psy6461 84 TDPSYEDVNNTFERSLVFMHK-MPRIWLDYGRFLM-DQHKITQTRHVFDRA-----LRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
.|.+.-|....+-.++.+|. +|-.-+-.+..+. +..++.=.+..++.. |...|. -..-..++.|+....
T Consensus 355 -RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 355 -RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYSLALARFFLRKN 430 (665)
T ss_pred -cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHHHHHHHHHHhcC
Confidence 37788899999999999987 7766555555553 345666666666655 344552 223345677777655
Q ss_pred C---hHHHHHHHHHHHhhCCCCH
Q psy6461 157 V---PETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 157 ~---~~~A~~~~~~~l~~~p~~~ 176 (703)
. ...|...+.+|+..+|.-.
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P~vl 453 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHPLVL 453 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCcHHH
Confidence 4 4678889999999988654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=6.9 Score=38.18 Aligned_cols=54 Identities=11% Similarity=-0.056 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 530 TKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
+++++|..+.+..+...|++ +.-|..-|-++.+.|.+..|+.-++..+..+|++
T Consensus 195 ~~~~~AL~~~e~ll~l~P~d--p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 195 KQMELALRASEALLQFDPED--PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34444444444444444444 3334444444444444444444444444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.01 E-value=8.2 Score=37.25 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 110 LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 110 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
...+..+...|.+.+|..+.+++++.+| -+...|..+...+...|+--.|.+.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp--L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP--LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3446666777888888888888888888 34677778777777777766666666654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=6.8 Score=38.25 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=26.7
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
.++++.|..+.++.+...|+++. -|-..+-++.+.|.+..|+.=++..++.+|.
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34445555555555555555443 3444444555555555555555555555443
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=85.69 E-value=6.8 Score=39.78 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=64.2
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh---cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK---NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~---~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+-...+.+|+.||.++.+|..-.-... ..++..=..+.+++++.+|.|...| .|-++...+..... ....+=.
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~~~~~~~---~~~~~El 169 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW-HYRRFVVEQAERSR---NLEKEEL 169 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch-HHHHHHHHHHhccc---ccchhHH
Confidence 334566778888888888888776555 3456777788888888888888888 45555554432211 1233446
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 93 NTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 93 ~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
+...+++..++.|.++|..-..++
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHH
Confidence 677777777888888886544443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.65 E-value=9.8 Score=35.80 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHHh----CCCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCc
Q psy6461 530 TKLERARDLFEQCLEA----CPPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 530 ~~~~~A~~~~~~al~~----~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 604 (703)
..+++|.+.|.-|+-. .++. .-..+++.+|.++...|+-+.....+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl----------------------------- 141 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFL----------------------------- 141 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHH-----------------------------
Confidence 3457777777766653 1111 11357888888888777743333333
Q ss_pred hHHHHHHHHHHHhC--CCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 605 PKTRQIYERAIESL--PEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 605 ~~A~~~~~~al~~~--p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
..|...|+++++.. |..+ ...+....|.+..+.|++++|.++|.+.+...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33555566666543 2221 12256667889999999999999999999873
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=85.60 E-value=50 Score=34.57 Aligned_cols=163 Identities=12% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCChhHHHHHHHHHHHh---CCCc-----chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHH--HHHHHH
Q psy6461 529 GTKLERARDLFEQCLEA---CPPR-----YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN--IYIKKA 598 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~ 598 (703)
.+++.+|..-...+..- .|.- ..+.+...+|.+-...|-++.|..-|..|++.....+. ..+. ...-.+
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-QAFCNLNLAISY 414 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-HHHHHHhHHHHH
Confidence 45566666555555443 3431 11234455555555667778888888777776544321 1111 111122
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----ChHhHHHH
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPT--------RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----TAGFWAAW 666 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~ 666 (703)
.+.++ +..+++-.-...|.+.. ..+.+-++-+....|++.+|+..+...+++...+. .+.....+
T Consensus 415 L~~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 415 LRIGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHhcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 22333 33344333334554321 12556677777888899999988888888742221 12223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Q psy6461 667 KSFEITHGNEDTMREMLRIKRSVQAQYNT 695 (703)
Q Consensus 667 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 695 (703)
.-+....|+-.+.+++++=+-.+.+.++.
T Consensus 492 s~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 44455667777777777666666655543
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=85.51 E-value=62 Score=35.52 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=44.3
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|.+++|.+.|-.+=+. ++ -..+..+.|++-+..++++.+-.-... ......|...+........
T Consensus 748 g~feeaek~yld~drr-----------DL---Aielr~klgDwfrV~qL~r~g~~d~dD--~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR-----------DL---AIELRKKLGDWFRVYQLIRNGGSDDDD--EGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred cchhHhhhhhhccchh-----------hh---hHHHHHhhhhHHHHHHHHHccCCCcch--HHHHHHHHHHHHHHHHHHH
Confidence 7777777777654221 01 123444566776666666654332111 2234677788877777777
Q ss_pred HHHHHHHHHHH
Q psy6461 446 EEAALRLMARA 456 (703)
Q Consensus 446 ~~~A~~~~~~a 456 (703)
+++|.+.|..+
T Consensus 812 We~A~~yY~~~ 822 (1189)
T KOG2041|consen 812 WEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHhc
Confidence 88888887654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.80 E-value=17 Score=33.30 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTRQMCLKF 630 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~ 630 (703)
.+|..|.+ .|+ +.|+..|-++-+...-+ .+.+....+.++. ..+.++++.++-++|+..+. +..+++...+
T Consensus 112 llYy~Wsr----~~d-~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 112 LLYYHWSR----FGD-QEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred HHHHHhhc----cCc-HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 56777753 344 56777777655443222 2456666677775 46888999999999987543 3456688899
Q ss_pred HHHHHHcCCHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAI 646 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~ 646 (703)
+.++.+.|+++.|--+
T Consensus 185 as~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 185 ASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHHhcchhhhhhh
Confidence 9999999998887543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.29 E-value=7.7 Score=37.83 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
...++..++..+...|+++.+...+++.+..+|.+. .+|..+...+.+.|+...|+..|++.-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345678888889999999999999999999999886 8999999999999999999999987654
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=84.13 E-value=5.7 Score=42.05 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP-RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
|+...|.+-+.+|+-..|... -....+++++...|-.-.|-.++.++|.++- ..+..+...++.+....+.+.|++.
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS--SEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--cCchHHHhcchhHHHHhhhHHHHHH
Confidence 677788888888888877533 3345778888888877788888888888774 2356666677777777888899999
Q ss_pred HHHHHhhCCCCHHH
Q psy6461 165 FRRYLKLFPEDAED 178 (703)
Q Consensus 165 ~~~~l~~~p~~~~~ 178 (703)
|+.+++.+|++...
T Consensus 699 ~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 699 FRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHhcCCCChhh
Confidence 99999988888763
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.51 E-value=2.6 Score=27.15 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
..+..+|..|...|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467899999999999999999999998753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=83.14 E-value=4.2 Score=27.68 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhh--cCCcccHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQT--VTTVRDFTQ 290 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~ 290 (703)
..|+.+...+.+.|++++|.++|++..+. .|+...+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 57999999999999999999999998885 354444333
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=83.12 E-value=65 Score=33.83 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF 298 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~ 298 (703)
.++.++.|-.|...|++-.|-+.|..+++.+-.. .++|.+.++-
T Consensus 335 ~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n---PrlWLRlAEc 378 (696)
T KOG2471|consen 335 MEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN---PRLWLRLAEC 378 (696)
T ss_pred hhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 4678889999999999999999999999875432 3677766654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.84 E-value=9.9 Score=26.43 Aligned_cols=24 Identities=8% Similarity=-0.107 Sum_probs=13.9
Q ss_pred HHHcCChHHHHHHHHHHhhccCcc
Q psy6461 562 EEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
..+.|++++|++..+.+++..|++
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHhhhHHHHHHHHHHHHhhCCCc
Confidence 346666666666666666666665
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.59 E-value=7.1 Score=27.14 Aligned_cols=32 Identities=13% Similarity=-0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccCCCCc
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFDKATLVPYTKV 426 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 426 (703)
.+.+|-.+.+.|++++|+...+.+|++.|.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 45556777889999999999999999999886
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=81.51 E-value=77 Score=34.50 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccC-----------CCCchhHHHHHHHHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGK-----------VITDPSYEDVNNTFERS 98 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~a 98 (703)
...|..++.... .-+++-|+..|.|.- +. -|+.++--+.++-.+. |.-.|++.+|.++|.+.
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rVR-----dl-~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRVR-----DL-RYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHHh-----cc-HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 367999988877 788999999998873 22 2444442222111111 11246677777777652
Q ss_pred HHhcCCCHHHH--------HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH---
Q psy6461 99 LVFMHKMPRIW--------LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR--- 167 (703)
Q Consensus 99 l~~~p~~~~~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--- 167 (703)
....++. .++++=++..|.-++-..+.++--...-+-..+ ...++++...|+.++|+.+.-.
T Consensus 659 ----G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW 731 (1081)
T KOG1538|consen 659 ----GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGW 731 (1081)
T ss_pred ----CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccH
Confidence 2222221 133343444555444444443322211100011 2345555566666665543211
Q ss_pred -------HHhhCC---CCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHH
Q psy6461 168 -------YLKLFP---EDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVD 237 (703)
Q Consensus 168 -------~l~~~p---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 237 (703)
+-+++. ++......++.....+--|.++|.++-+-... .+.-....-|.+...+-.++|+-
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksi--VqlHve~~~W~eAFalAe~hPe~------- 802 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSL--VQLHVETQRWDEAFALAEKHPEF------- 802 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHH--hhheeecccchHhHhhhhhCccc-------
Confidence 111111 11112223333333333344444433110000 00111223344444444444432
Q ss_pred HHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 238 AIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
..++++-+|.|+.+..++++|.+.|-++-.
T Consensus 803 -------------~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 803 -------------KDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred -------------cccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 236888999999999999999999887654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.85 E-value=11 Score=36.72 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 106 PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
..+...++..+...|+++.+...+++.+..+| .+...|..+...+...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555677777778888888888888888888 4578888888888888888888888887654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=80.71 E-value=40 Score=29.79 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.++.+.+..++...--..|.. +.+-+.-+.+....|++.+|+.+|+......|... .-...+.++....+-..-|
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~--~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEF--PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKALLALCLYALGDPSWR 97 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHcCChHHH
Confidence 346788889998888889988 56777778888889999999999998877766542 2334444444444445556
Q ss_pred HHHHHHHHhCCC
Q psy6461 609 QIYERAIESLPE 620 (703)
Q Consensus 609 ~~~~~al~~~p~ 620 (703)
..-+.+++..|+
T Consensus 98 ~~A~evle~~~d 109 (160)
T PF09613_consen 98 RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHhcCCC
Confidence 666666665543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.22 E-value=3.2 Score=23.75 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q psy6461 395 WIEFGKFYEVNDQLEDARLIFD 416 (703)
Q Consensus 395 ~~~~a~~~~~~~~~~~A~~~~~ 416 (703)
.+.++..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4455556666666666665554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 133 bits (334), Expect = 5e-33
Identities = 82/588 (13%), Positives = 187/588 (31%), Gaps = 95/588 (16%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVK 79
E+++ NP+ + W I +N P YER + + P S + W Y++ K
Sbjct: 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-- 59
Query: 80 GKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD-----QHKITQTRHVFDRALR 134
+Y+ V F+R L+ + +W Y ++ + + +D AL
Sbjct: 60 ------KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALD 112
Query: 135 ALPI-TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
+ + +++W Y++F+K + + ++++ R+ +
Sbjct: 113 KIGMEIMSYQIWVDYINFLKGVE----------------AVGSYAENQRITAVRRVYQRG 156
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
+ QLW + + +N+ + R D +
Sbjct: 157 CV------------NPMINIEQLWRDYNKY-------EEGINIHLAKKMIEDRSRDYMNA 197
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAEN 313
+ + GL A + + ++ Y Q+E+ N
Sbjct: 198 RRVAKEYETVMKGLDRNAPSVPPQNTP---QEAQQVDMWKKYIQWEK-----------SN 243
Query: 314 DTPSEEDDIELELRLARLEDLMER----RLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPL 369
+E+ + + + E + + + + +L +
Sbjct: 244 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303
Query: 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL 429
+ Y A+ T+ K L+ + + E + E I+++ + D
Sbjct: 304 EAANIYERAISTLLK-----KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---DP 355
Query: 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYAD 489
V+ ++ + RA ++ + +A + A ++ K +
Sbjct: 356 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV------ 409
Query: 490 LEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC--P 547
FK +E G+ + I + Y+ +LS + R LFE+ L + P
Sbjct: 410 ------AFKIFELGLKKY--GDIPEYVLAYI-DYLSHLN--EDNNTRVLFERVLTSGSLP 458
Query: 548 PRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYI 595
P + ++ + E G + V +R A E + + +
Sbjct: 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLV 506
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 81/663 (12%), Positives = 182/663 (27%), Gaps = 167/663 (25%)
Query: 52 IYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLD 111
+ E+ L+E P W ++ + Q + T+ER + R W
Sbjct: 1 MAEKKLEENPYDLDAWSILIREAQNQ---------PIDKARKTYERLVAQFPSSGRFWKL 51
Query: 112 YGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKL 171
Y + + +F R L + + +++ YL
Sbjct: 52 YIEAEIKAKNYDKVEKLFQRCLMKVL-----------------------HIDLWKCYLSY 88
Query: 172 FPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKI 231
E Y + + + A+ ++Q+W + +
Sbjct: 89 VRETKGKLPSYKEKMAQAYDFALDKI----------GMEIMSYQIWVDYINFLKGVEAV- 137
Query: 232 RSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQV 291
Y + R +Y+ + Q+
Sbjct: 138 ----------------------------GSYAENQRITAVRRVYQRGCVNPMINIE--QL 167
Query: 292 FDAYAQFE----ELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLL 347
+ Y ++E K +E+ + + + E E + L+
Sbjct: 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA-----------P 216
Query: 348 RQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407
P N + ++V ++ +I++ K +
Sbjct: 217 SVPPQNTPQEAQQVDMWKK----------------------------YIQWEK--SNPLR 246
Query: 408 LEDARLIFDKATLVPYTKVEDLAT---VWCEWAELELRAGQEEAALRLMARATATPARPV 464
ED LI + + L +W E A+ ++ + A M A
Sbjct: 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306
Query: 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524
++ A + + K++ L+ YAD EES
Sbjct: 307 NIYERA--ISTLLKKNMLLYFAYADYEESRM----------------------------- 335
Query: 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584
K E+ ++ + L +Y+ Y K + ++++A
Sbjct: 336 ------KYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDART 388
Query: 585 EEMFEMFNIYIKKAAEIYGIPKT-RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRA 643
+ +I+E ++ + P + L + + + L E +
Sbjct: 389 RHHVYVT--AALMEYYCSKDKSVAFKIFELGLKKYGDIP--EYVLAYIDYLSHLNEDNNT 444
Query: 644 RAIYAHC--SQICDPRVTAGFWAAWKSFEITHGNEDTMREML-RIKRSVQAQYNTQVLFT 700
R ++ S P + WA + +FE G+ ++ ++ R + + +Y +
Sbjct: 445 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL 504
Query: 701 FLH 703
+
Sbjct: 505 LVD 507
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 65.7 bits (159), Expect = 2e-11
Identities = 39/304 (12%), Positives = 90/304 (29%), Gaps = 27/304 (8%)
Query: 19 PYEEEILRNPFSVKHWLRYIEHKKNAP---------KAIINTIYERSLKELPGSYKLWYN 69
+ + V W +YI+ +K+ P + YE+ L L +WY
Sbjct: 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE 277
Query: 70 YLKLRRKQVKGKV------ITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKI 122
+ + K ++ N +ER++ + K ++ Y + + K
Sbjct: 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337
Query: 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182
+ +++R L I V+ Y+ F + ++ +F++ + Y+
Sbjct: 338 EKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396
Query: 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQ--NPDKIRSLNVDAII 240
+ I K + + +S + R L +
Sbjct: 397 ALMEYYCSKDKSVAFKIFEL---GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453
Query: 241 RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV---TTVRDFTQVFDAYAQ 297
G L ++ G +W + G + + ++ + D Y
Sbjct: 454 SGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKF 511
Query: 298 FEEL 301
+
Sbjct: 512 MDLY 515
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 9e-27
Identities = 56/440 (12%), Positives = 120/440 (27%), Gaps = 91/440 (20%)
Query: 322 IELELRL---ARLEDLMERRLLLLNSVLLRQNPHNVLEWH---KRVRLFDGKPLDIIRTY 375
LE L R L ++ L W + VR K + Y
Sbjct: 21 ARRLYMSKDYRSLESLFGRCLKKSYNLDL---------WMLYIEYVRKVSQKKFKLYEVY 71
Query: 376 TEAVKTVDPKLAVGKLHTLWIEF-GKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
+ + L+ +IE GK + ++E R + +A P + +L W
Sbjct: 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSEL---WK 128
Query: 435 EWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494
++ EL + + + Y ++ S+K + DLE
Sbjct: 129 DFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR---GWSVKNAARLIDLEMEN 185
Query: 495 GT-----------FKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543
G + L + Y +++ Y ++L G + E+A+ + E+ +
Sbjct: 186 GMKLGGRPHESRMHFIHNY--ILDSFYYAEEVYFFYS-EYLIGIG--QKEKAKKVVERGI 240
Query: 544 EACPPRYAKTLY-------------------------------------LLYAKLEEEHG 566
E + Y + + +
Sbjct: 241 EMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300
Query: 567 LARHAMAVYERATGAVLPEEMFE---MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623
++ + +F Y + I+ + P+
Sbjct: 301 GLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATP-----YNIFSSGLLKHPDST- 354
Query: 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683
+ +F ++G+ + ARA++ + W + +E G+ + RE++
Sbjct: 355 -LLKEEFFLFLLRIGDEENARALFKRLEKTSR------MWDSMIEYEFMVGSMELFRELV 407
Query: 684 RIKRSVQAQYNTQVLFTFLH 703
K
Sbjct: 408 DQKMDAIKADAILPPLPPRE 427
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 94.5 bits (234), Expect = 2e-20
Identities = 67/457 (14%), Positives = 140/457 (30%), Gaps = 65/457 (14%)
Query: 18 LPYEEEILRNPFSVKHWLRYIEH-KKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRK 76
+ EE++ S + + + + +++ R LK+ + LW Y++ RK
Sbjct: 1 MDAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRK 59
Query: 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPR---IWLDYGRFLM----DQHKITQTRHVF 129
+ +E +L ++ +Y +Q +I + R+ +
Sbjct: 60 -------VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGY 112
Query: 130 DRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
RAL+ P+ +W + +F T ++ L +F + Y + I
Sbjct: 113 MRALQ-TPMGSLSELWKDFENFELELN-KITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170
Query: 190 DEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTD 249
+ + L ++ +N K+ ++ + D
Sbjct: 171 -----------------------SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207
Query: 250 QLGH---LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQ---VFDAYAQFEELSL 303
+ ++ ++Y I G E+A+ + E I+ + V D A + +L
Sbjct: 208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGDLKR 267
Query: 304 NKRMEEIAENDTPSEEDDIELELRLA----RLEDLMERRLLLLNSVLLRQNPHNVLEWHK 359
M E + ++ L + + L R L + PH +
Sbjct: 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYC-A 326
Query: 360 RVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT 419
+ + + P L EF F E+AR +F +
Sbjct: 327 FIEYYATGSRATPYNIFSSGLLKHPDST-----LLKEEFFLFLLRIGDEENARALFKRL- 380
Query: 420 LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARA 456
E + +W E E G E L+ +
Sbjct: 381 -------EKTSRMWDSMIEYEFMVGSMELFRELVDQK 410
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 4e-19
Identities = 66/524 (12%), Positives = 139/524 (26%), Gaps = 86/524 (16%)
Query: 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154
E + P +++ R L +F R L+ + +W LY+ +V+
Sbjct: 3 AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY---NLDLWMLYIEYVRK 59
Query: 155 -HAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSN 213
V+ L F + Y Y IE K
Sbjct: 60 VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE-----------------EEGKIEDEQ 102
Query: 214 HQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARD 273
++ +KIR+ Y L SL++ + FE +
Sbjct: 103 TRI------------EKIRNG------------YMRALQTPMGSLSELWKDFENFELELN 138
Query: 274 IYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333
T+ F F Y Q + + + D+E+E +
Sbjct: 139 KITGKKIVGDTLPIFQSSFQRYQQIQ------PLIRGWSVKNAARLIDLEMENGMKLGGR 192
Query: 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKL 391
E R+ +++ +L + + G+ + ++ D
Sbjct: 193 PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF----- 247
Query: 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV--EDLATVWCEWAELELRAGQEEAA 449
L + +G + D + + KV ++L + L+ E
Sbjct: 248 --LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305
Query: 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509
+L +E +Y + + + + G+
Sbjct: 306 RKLFIELG----------NEGVGPHVFIYCAFIEYYATGSRATP---YNIFSSGLLKH-- 350
Query: 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLAR 569
P + + FL R G E AR LF++ + ++ + E G
Sbjct: 351 PDSTLLKEEFF-LFLLRIG--DEENARALFKRLEKTSR------MWDSMIEYEFMVGSME 401
Query: 570 HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYER 613
+ ++ A+ + + + + +
Sbjct: 402 LFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDS 445
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 41/348 (11%), Positives = 100/348 (28%), Gaps = 37/348 (10%)
Query: 12 TENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYL 71
+ +L + E + + + ++ + S K +
Sbjct: 120 MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLI 179
Query: 72 KLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDR 131
L + K+ P ++ L + ++ Y +L+ + + + V +R
Sbjct: 180 DLE-MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVER 238
Query: 132 ALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE------DAEDYIEYLSS 185
+ + L + AV R + E I +L+
Sbjct: 239 GIEMSDGMFLSLYYGLVM---DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295
Query: 186 IERLDEA-AVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244
+ + + +I V H + + I GL
Sbjct: 296 VLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIE---YYATGSRATPY-----NIFSSGL 347
Query: 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE---- 300
++ D L + +R G E AR +++ +T +++D+ ++E
Sbjct: 348 LKHPDS-TLLKEEFFLFLLRIGDEENARALFKRLEKTS-------RMWDSMIEYEFMVGS 399
Query: 301 ----LSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNS 344
L + + + D + + ++E ++ R L+S
Sbjct: 400 MELFRELVDQKMDAIKAD--AILPPLPPREHNVQMEGILGRYHCFLDS 445
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 33/258 (12%), Positives = 85/258 (32%), Gaps = 32/258 (12%)
Query: 469 EAETVQARVYKSIKLWSLYADLEESFGTFKA----YEKGIALFKWPYIFDIWNTYLTKFL 524
+AE S +A +++ + + + K Y D+W Y+ +++
Sbjct: 2 DAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCL---KKSYNLDLWMLYI-EYV 57
Query: 525 SRYGGTKLERARDLFEQCLEACPPRYAK-TLYLLY----AKLEEEHGLARHAMAVYERAT 579
+ K + +++E L + LY Y K+E+E Y RA
Sbjct: 58 RKVSQKK-FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL 116
Query: 580 GAVLP--EEMFEMFNIYIKKAAEIYG---IPKTRQIYERAIESLPEEPTRQMCLKFAEME 634
+ E+++ F + + +I G + T I++ + + +
Sbjct: 117 QTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAA 176
Query: 635 TKL-----------GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683
+ G +R + H + + + + I G ++ ++++
Sbjct: 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236
Query: 684 RIKRSVQAQYNTQVLFTF 701
+R ++ + +
Sbjct: 237 --ERGIEMSDGMFLSLYY 252
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 20/212 (9%)
Query: 33 HWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92
+ L Y+ K+ ++ E ++ + S
Sbjct: 291 NHLNYVLKKRGLELFR--KLFIELGNEGV-GPHVFIYCAFIEYYATG-------SRATPY 340
Query: 93 NTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152
N F L+ + ++ FL+ R +F R + R+W + +
Sbjct: 341 NIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL------EKTSRMWDSMIEYE 394
Query: 153 KSHAVPETAVRVFRRYLKLFPEDA-EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGK 211
E + + + DA + +++ + ++ +F+ +
Sbjct: 395 FMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIR 454
Query: 212 SNHQLWNELCE---MISQNPDKIRSLNVDAII 240
N +L +E E ISQ + + +L V+ +I
Sbjct: 455 DNSRLLDEFMENLPKISQQNNVLSNLRVEKVI 486
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-22
Identities = 67/610 (10%), Positives = 154/610 (25%), Gaps = 108/610 (17%)
Query: 13 ENEEDLPYEEEILRNPFSVKHWLRYI-EHKKNAPKAIINTIYERSLKELPGSYKLWYNYL 71
E++ + I P + +++ + H + +++ P +W L
Sbjct: 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRL 107
Query: 72 KLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP--RIWLDYGRFLMDQHKITQ----- 124
L +++ + R L +WL Y ++ ++ I
Sbjct: 108 SLEFDKMEEL-----DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162
Query: 125 ---TRHVFDRALRA--LPITQHHRVWPLYLSFVKSHAVP---------ETAVRVFRRYLK 170
F + + + + W YL F++ + ++++ L
Sbjct: 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222
Query: 171 LFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDK 230
+ E + + E+ +I + N + P
Sbjct: 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282
Query: 231 IRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR-------SGLFERARDIYEEAIQTVT 283
+ + + Y Q +W + R +Y +A Q
Sbjct: 283 LNQATESNLPKP--NEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ--- 337
Query: 284 TVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLN 343
V +++ A ++ E +T S L+L + + L
Sbjct: 338 HVCFAPEIWFNMANYQG-----------EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE 386
Query: 344 SVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403
L + L + ++ +L KL ++ + +
Sbjct: 387 QYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK-SKLTYVYCVYMNTMK 445
Query: 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR-AGQEEAALRLMARATATPAR 462
L +R IF K + D ++ E A +E + + A +++
Sbjct: 446 RIQGLAASRKIFGKCRRLKKLVTPD---IYLENAYIEYHISKDTKTACKVL--------- 493
Query: 463 PVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522
E + + Y D
Sbjct: 494 --------ELGLKYFATDGEYINKYLDFLIYVN--------------------------- 518
Query: 523 FLSRYGGTKLERARDLFEQCLEACPP-RYAKTLYLLYAKLEEEHGLARHAMAVYERATGA 581
+ + + LFE ++ K ++ E + G + +R
Sbjct: 519 --------EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570
Query: 582 VLPEEMFEMF 591
E F
Sbjct: 571 FPEVNKLEEF 580
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 45.8 bits (107), Expect = 4e-05
Identities = 26/247 (10%), Positives = 65/247 (26%), Gaps = 27/247 (10%)
Query: 443 AGQEEAALRLMARATATPARPVAYHDEAETVQARVYK---SIKLWSLYADLEESFGTF-- 497
G ++ M+ + +R D + + + I L+ S +
Sbjct: 25 TGGQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQ 84
Query: 498 --KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY 555
+ ++K ++P + +IW L+ + + +CL +L+
Sbjct: 85 VYETFDK--LHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142
Query: 556 LLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAI 615
L Y + + + + I+ K+ + + Y +
Sbjct: 143 LSYITYVRKKNDIITGGEEARNIVIQAF-QVVVDKCAIFEPKSIQFW------NEYLHFL 195
Query: 616 ESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675
E + + + R +Y W + +E
Sbjct: 196 EHWKPVNKFE----------EQQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQ 244
Query: 676 EDTMREM 682
R +
Sbjct: 245 LTARRHI 251
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 2e-21
Identities = 43/318 (13%), Positives = 95/318 (29%), Gaps = 67/318 (21%)
Query: 30 SVKHWLRYIEHKKNAPKAI---------INTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
V W +YI+ +K+ P + YE+ L L +WY + + K
Sbjct: 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 81 KV------ITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
++ N +ER++ + K ++ Y + + K + +++R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
V+ Y+ F + ++ +F++ + Y+
Sbjct: 127 AIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA---------- 175
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
+ Y +K + I GL++Y D
Sbjct: 176 -LMEYYCSK------------------------DKSVAF-----KIFELGLKKYGDI-PE 204
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQTVT-TVRDFTQVFDAYAQFEE--------LSLN 304
+ DY R ++E + + + +++ + FE L +
Sbjct: 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264
Query: 305 KRMEEIAENDTPSEEDDI 322
KR + +E +
Sbjct: 265 KRRFTAFREEYEGKETAL 282
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 5e-21
Identities = 50/301 (16%), Positives = 107/301 (35%), Gaps = 55/301 (18%)
Query: 394 LWIEFGKFYEVN-DQLEDARLIFDKATLVPYTKVEDLAT---VWCEWAELELRAGQEEAA 449
+W ++ ++ + N + ED LI + + L +W E A+ ++ + A
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69
Query: 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIA 505
M A ++ A + + K++ L+ YAD EES + Y + +A
Sbjct: 70 KGDMNNAKLFSDEAANIYERA--ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 506 LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565
+ ++ Y+ KF R G ++ R +F++ E R+ Y+ A +E
Sbjct: 128 IEDIDPTL-VYIQYM-KFARRAEG--IKSGRMIFKKAREDARTRHHV--YVTAALMEYYC 181
Query: 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ 625
A +I+E ++ + P +
Sbjct: 182 SK------DKSVA-----------------------------FKIFELGLKKYGDIP--E 204
Query: 626 MCLKFAEMETKLGEIDRARAIYAHCSQIC--DPRVTAGFWAAWKSFEITHGNEDTMREML 683
L + + + L E + R ++ P + WA + +FE G+ ++ ++
Sbjct: 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264
Query: 684 R 684
+
Sbjct: 265 K 265
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 30/235 (12%)
Query: 20 YEEEILRNPFSVKHWLRYIEHKKNAPKAII---------------NTIYERSLKE-LPGS 63
YE+ +L W ++ + + K + IYER++ L +
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP-RIWLDYGRFLMDQHKI 122
L++ Y ++K YE V++ + R L P +++ Y +F I
Sbjct: 99 MLLYFAYADYEESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150
Query: 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE---DY 179
R +F +A H V + + A ++F LK + + E Y
Sbjct: 151 KSGRMIFKKAREDARTRHHVYVTAALMEY-YCSKDKSVAFKIFELGLKKYGDIPEYVLAY 209
Query: 180 IEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSL 234
I+YLS + + V ++ S + + E + I +
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF-ESNIGDLASILKV 263
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 4e-15
Identities = 47/313 (15%), Positives = 100/313 (31%), Gaps = 50/313 (15%)
Query: 294 AYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL--------NSV 345
Y Q+E+ N +E+ + R+ E+ LL+L +
Sbjct: 13 KYIQWEK-----------SNPLRTEDQTLIT----KRVMFAYEQCLLVLGHHPDIWYEAA 57
Query: 346 LLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN 405
+ +L + + Y A+ T+ K L+ + + E
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-----MLLYFAYADYEESR 112
Query: 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVA 465
+ E I+++ + D V+ ++ + RA ++ + +A
Sbjct: 113 MKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169
Query: 466 YHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525
+ A ++ K + FK +E G+ + I + Y+ +LS
Sbjct: 170 VYVTAALMEYYCSKDKSV------------AFKIFELGLKKY--GDIPEYVLAYI-DYLS 214
Query: 526 RYGGTKLERARDLFEQCLEAC--PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583
+ R LFE+ L + PP + ++ + E G + V +R A
Sbjct: 215 HLN--EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272
Query: 584 PEEMFEMFNIYIK 596
E + + +
Sbjct: 273 EEYEGKETALLVD 285
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 30/210 (14%), Positives = 57/210 (27%), Gaps = 43/210 (20%)
Query: 479 KSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDL 538
+ + +W Y E+S + I +R
Sbjct: 6 QQVDMWKKYIQWEKSNPLRTEDQTLIT---------------------------KRVMFA 38
Query: 539 FEQCLEACPP------RYAK------TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586
+EQCL A+ L + + A +YERA +L +
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAI 646
M ++ Y K IY R + +PT + +++ + + I R I
Sbjct: 99 M-LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMI 156
Query: 647 YAHCSQICDPRVTAGFWAAWKSFEITHGNE 676
+ + + E +
Sbjct: 157 FKKAREDART--RHHVYVTAALMEYYCSKD 184
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 17/246 (6%)
Query: 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLN- 304
+Y +Q L D + A +IYE AI T+ ++ ++ AYA +EE +
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKY 115
Query: 305 KRMEEIAENDTPSEEDD-----IELELRLARLEDLMERRLLLLNSV-LLRQNPHNVLEWH 358
+++ I E+ D I+ R E + R++ + R H +
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175
Query: 359 KRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKA 418
+ + +K G + + + + ++ + R++F++
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229
Query: 419 TLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVY 478
E +W + E G + L++ R A Y + + Y
Sbjct: 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT--AFREEYEGKETALLVDRY 287
Query: 479 KSIKLW 484
K + L+
Sbjct: 288 KFMDLY 293
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 1e-15
Identities = 93/664 (14%), Positives = 193/664 (29%), Gaps = 237/664 (35%)
Query: 14 NEEDLPYEE--EILRNPFSVKHWLRYIEHKKNAPKAII-NTIYERSLKELPGSYKLWYNY 70
E Y++ + + F + ++ + PK+I+ + + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 71 LKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130
L KQ ++ F+ ++ RI +Y FLM K T+ R
Sbjct: 69 WTLLSKQ--------------EEMVQK---FVEEVLRI--NYK-FLMSPIK-TEQR---Q 104
Query: 131 RAL-RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERL 189
++ + I Q R++ +VF +Y + L +L
Sbjct: 105 PSMMTRMYIEQRDRLY--------------NDNQVFAKY----------NVSRLQPYLKL 140
Query: 190 DEAAVKLAYIVNKESFVSKHG-----KSNHQLWNELC---EMISQNPDKIRSLNV----- 236
+A ++L V G K+ + ++C ++ + KI LN+
Sbjct: 141 RQALLEL----RPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 237 -DAIIRGGLRRYTDQLGHLWNSLADY-----------------YIRSGLFERA----RDI 274
+ ++ + Q+ W S +D+ ++S +E ++
Sbjct: 195 PETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 275 YEEAI--------QTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326
+ + T R QV D LS ++ + + D L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRF-KQVTDF------LSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 327 RLA-----RLEDLMERRL----LLLNSV--LLRQNPHNVLEWHKRVRLFDGKPLD-IIRT 374
L R +DL L L+ + +R W + + L II +
Sbjct: 307 -LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---W-DNWKHVNCDKLTTIIES 361
Query: 375 YTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWC 434
++ ++P E+ K ++ +L +F + +P T + L+ +W
Sbjct: 362 ---SLNVLEPA-----------EYRKMFD---RLS----VFPPSAHIP-TIL--LSLIWF 397
Query: 435 EWAE-------------------------------LELRA-GQEEAAL--RLMARATATP 460
+ + LEL+ + E AL ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 461 ARP----------------VAYH----DEAET-------------VQARVYKSIKLWSLY 487
+ +H + E ++ ++ W+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTY------LTKFLSRYGGTKLERAR--DLF 539
+ + K Y+ YI D Y + FL + L ++ DL
Sbjct: 518 GSILNTLQQLKFYKP--------YICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLL 568
Query: 540 EQCL 543
L
Sbjct: 569 RIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 57/325 (17%), Positives = 100/325 (30%), Gaps = 81/325 (24%)
Query: 1 PESTGFTGIYTTENEEDLPYEEEILRNPFSVK-----------HW--LRYIEHKKNAPKA 47
E Y +DLP E + NP + W +++ K
Sbjct: 301 DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----- 354
Query: 48 IINTIYERSLKEL-PGSYKLWYNYLKLRRKQVK--GKVI----TDPSYEDVNNTFERSLV 100
+ TI E SL L P Y+ ++ L + ++ D DV +
Sbjct: 355 -LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVVVN 409
Query: 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP----ITQHHRVWPLYLSFVKSHA 156
+HK L+++ T + L HR S V +
Sbjct: 410 KLHK---------YSLVEKQPKESTISIPSIYLELKVKLENEYALHR------SIVDHYN 454
Query: 157 VPETAVRVFRRY-LKLFPEDAED-----YIEY-LSSIERLDEAA------VKLAYIVNKE 203
+P + + D +I + L +IE + + ++ K
Sbjct: 455 IP-------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 204 SFVSKHGKSNHQLWNELCEM------ISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNS 257
S ++ + N L ++ I N D V+AI+ L + + +L S
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERLVNAILDF-LPKIEE---NLICS 562
Query: 258 LADYYIRSGLFERARDIYEEAIQTV 282
+R L I+EEA + V
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 6e-06
Identities = 64/470 (13%), Positives = 119/470 (25%), Gaps = 198/470 (42%)
Query: 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLK 72
++ ++ S++ LR + K YE L
Sbjct: 218 DHSSNIKLRIH------SIQAELRRLLKSKP---------YENCL--------------- 247
Query: 73 LRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIW--LDYG-RFLMDQHKITQTRHVF 129
++ +V N + W + + L+ T+ + V
Sbjct: 248 ---------LVLL----NVQN------------AKAWNAFNLSCKILL----TTRFKQVT 278
Query: 130 DR--ALRALPITQHHRVWPL-----------YLSFVKSHAVPETAVRVFRRYLKLFPE-- 174
D A I+ H L YL + +P + R L + E
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESI 337
Query: 175 -DAEDYIEYL-------------SSIERLDEAAVKLAY---------------------- 198
D + SS+ L+ A + +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 199 ---------IVN---KESFVSKHGKSN----HQLWNELCEMISQNPDKIRSLNVDAIIRG 242
+VN K S V K K + ++ EL + RS+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-------- 449
Query: 243 GLRRYTDQLGHLWNSLA----DYYI------------RSGLFERARDIY------EEAIQ 280
+ Y + L D Y R ++ E+ I+
Sbjct: 450 -VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 281 TVTT-------VRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333
+T + + Q Y + I +ND + E + + D
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPY-----------ICDNDP-------KYERLVNAILD 550
Query: 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVD 383
+ + + L+ ++L R+ L + I + EA K V
Sbjct: 551 FLPK----IEENLICSKYTDLL----RIALMA--EDEAI--FEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 78/530 (14%), Positives = 154/530 (29%), Gaps = 143/530 (26%)
Query: 213 NHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERAR 272
+H + E E Q D I S+ DA + + + + L+ E
Sbjct: 4 HHHMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDM--PKSILSK--------EEID 52
Query: 273 DIYEEAIQTVTTVRDFTQVFD----AYAQFEELSLNKR----MEEIA-ENDTPSEEDDIE 323
I T+R F + +F E L M I E PS +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 324 LELR--------------LARLEDLMERRLLLLNSVLLRQNPHNVLEWH------KRVRL 363
+E R ++RL+ ++ R LL LR + ++ K +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPAKNVLI--DGVLGSGKTW-V 166
Query: 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423
LD+ +Y V+ K+ W+ LE + + + +
Sbjct: 167 ----ALDVCLSY--KVQCKMD----FKIF--WLNLKNCNSPETVLEMLQKLLYQIDP-NW 213
Query: 424 TKVEDLAT---VWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480
T D ++ + + ELR RL+ + Y++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELR--------RLLKS--------------------KPYEN 245
Query: 481 IKL-----WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERA 535
L + A +F K + ++ + D + T +S L+
Sbjct: 246 CLLVLLNVQN--AKAWNAFN-LSC--KILLTTRFKQVTDFLSAATTTHIS------LDHH 294
Query: 536 RDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNI-- 593
P K+L L Y + L R + R +++ E + +
Sbjct: 295 SMTLT-------PDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRL-SIIAESIRDGLATWD 345
Query: 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653
K K I E ++ L R+M F + +++ + I
Sbjct: 346 NWKH----VNCDKLTTIIESSLNVLEPAEYRKM---FDRL-----------SVFPPSAHI 387
Query: 654 CDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQVLFTFLH 703
+ + W ++ + ++ K S+ + + + +
Sbjct: 388 -PTILLSLIWFDVIKSDV----MVVVNKL--HKYSLVEKQPKESTIS-IP 429
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 51/183 (27%)
Query: 403 EVNDQLEDARLIFDKATLVPYTKVEDLATVWCE---WAELELRAGQEEAA----LRLMAR 455
E + QL ++ +++ L ++D ++ + W E+ M R
Sbjct: 3 EQHSQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMER 62
Query: 456 ATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDI 515
Y ++ + +K+W Y +L S
Sbjct: 63 CLIYIQDMETYRNDP--------RFLKIWIWYINLFLS---------------------- 92
Query: 516 WNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
+ + F+ Y ++KL E A +
Sbjct: 93 --------------NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138
Query: 576 ERA 578
E
Sbjct: 139 ELG 141
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 22/277 (7%)
Query: 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAEL 439
+++ L K H W + D ED +F + E AT+ A L
Sbjct: 7 NSLESSLRQLKCHFTW-NLMEGENSLDDFEDK--VFYRTEFQNR---EFKATMCNLLAYL 60
Query: 440 ELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA--DLEESFGTF 497
+ GQ EAAL + +A + H + +++ V W Y L +
Sbjct: 61 KHLKGQNEAALECLRKAEELIQQ---EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 498 KAYEKGIALFKWPYIFDIWNTYLTK--FLSRYGGTKLERARDLFEQCLEACP--PRYAKT 553
+ F PY + + + GG + ERA+ FE+ LE P P +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFN---IYIKKAAEIYGIPKTRQI 610
L + +L+ +++A+ +A + P+ + K E + ++
Sbjct: 178 LAIASYRLDNW-PPSQNAIDPLRQAI-RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235
Query: 611 YERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647
E A+E P + A+ + E D+A +
Sbjct: 236 VEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIELL 270
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 703 | |||
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 100.0 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.79 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.75 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.75 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.71 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.7 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.7 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.66 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.64 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.6 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.6 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.51 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.51 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.5 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.5 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.49 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.48 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.48 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.47 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.47 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.46 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.46 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.46 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.45 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.45 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.43 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.41 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.41 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.4 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.38 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.35 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.32 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.32 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.26 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.23 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.21 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.2 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.19 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.19 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.13 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.13 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.12 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 99.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.11 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.09 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.09 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.08 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.08 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.06 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.06 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.05 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.0 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.99 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.98 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.96 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.93 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.91 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.89 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.88 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.88 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.79 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.79 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.75 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.75 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.74 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.7 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.67 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.63 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.53 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.51 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.5 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.44 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.43 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.4 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.37 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.21 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.12 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.73 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.64 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.42 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.28 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 97.27 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.17 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 97.14 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 97.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.04 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.89 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.88 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 96.79 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.19 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.79 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.46 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.31 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.51 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.16 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.51 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.95 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.63 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.56 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.47 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.71 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.38 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 84.06 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.06 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.45 |
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=335.06 Aligned_cols=437 Identities=18% Similarity=0.344 Sum_probs=329.4
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERS 98 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 98 (703)
.|+++|+.+|.+.++|..++.....+++++|+.+|+++++.+|.+..+|..|+.++... |++++|+.+|+++
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------~~~~~a~~~~~ra 72 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--------KNYDKVEKLFQRC 72 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Confidence 37899999999999999999974489999999999999999999999999999998764 8899999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHh-ccChHHHHH----HHHHHHHhCCcc-cccccHHHHHHHHHh---------cCChHHHHH
Q psy6461 99 LVFMHKMPRIWLDYGRFLMD-QHKITQTRH----VFDRALRALPIT-QHHRVWPLYLSFVKS---------HAVPETAVR 163 (703)
Q Consensus 99 l~~~p~~~~~~~~~~~~~~~-~~~~~~A~~----~~~~al~~~p~~-~~~~~~~~~~~~~~~---------~~~~~~A~~ 163 (703)
+...| ++.+|..|+.+... .|+++.|+. +|++++...+.+ ....+|..++.++.. .|+++.|+.
T Consensus 73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred HhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 99999 78899999986654 577776665 899998864421 347899999999865 455566666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
+|+++++ .|.+.. .
T Consensus 152 ~y~~al~-~P~~~~------------------------------------~----------------------------- 165 (530)
T 2ooe_A 152 VYQRGCV-NPMINI------------------------------------E----------------------------- 165 (530)
T ss_dssp HHHHHTT-SCCTTH------------------------------------H-----------------------------
T ss_pred HHHHHHh-chhhhH------------------------------------H-----------------------------
Confidence 6666666 343310 0
Q ss_pred hhhhccchhhHHHHHHHHHHH-------------hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q psy6461 244 LRRYTDQLGHLWNSLADYYIR-------------SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEI 310 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 310 (703)
..|..++.+... .+++..|+.+|+..-.
T Consensus 166 ---------~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~------------------------------ 206 (530)
T 2ooe_A 166 ---------QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET------------------------------ 206 (530)
T ss_dssp ---------HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHH------------------------------
T ss_pred ---------HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHH------------------------------
Confidence 112212111111 1122222222221000
Q ss_pred hhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccC--
Q psy6461 311 AENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAV-- 388 (703)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-- 388 (703)
....+++++..++|....
T Consensus 207 ------------------------------------------------------------~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 207 ------------------------------------------------------------VMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp ------------------------------------------------------------HHHHCCSSSCCCCCC--CCH
T ss_pred ------------------------------------------------------------HHHHhccccccCCCCCChhH
Confidence 000000011011221000
Q ss_pred CchhHHHHHHHHHHHHc----CCh----HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-------cCCHH------
Q psy6461 389 GKLHTLWIEFGKFYEVN----DQL----EDARLIFDKATLVPYTKVEDLATVWCEWAELELR-------AGQEE------ 447 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~----~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------ 447 (703)
.....+|..+..+.... ++. ++++.+|++++..+|.++ .+|+.++.++.+ .|+++
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~----~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 01245777777666543 232 478899999999999998 999999999886 68876
Q ss_pred -HHHHHHHHHhc-CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 448 -AALRLMARATA-TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 448 -~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+|+.+|++|++ .+|++ ..+|..++.++...|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~-----------------~~l~~~~~~~~~~~g~~---------------------------- 337 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKN-----------------MLLYFAYADYEESRMKY---------------------------- 337 (530)
T ss_dssp HHHHHHHHHHTTTTCSSC-----------------HHHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHhcCCH----------------------------
Confidence 99999999997 78874 89999999999887775
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|+.+|+++++..|.+. ..+|+.++.++.+.|++++|+.+|++|++..|......+..+++.+. ..|+.+
T Consensus 338 -------~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~ 408 (530)
T 2ooe_A 338 -------EKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKS 408 (530)
T ss_dssp -------HHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHH
T ss_pred -------HHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChh
Confidence 999999999999999873 25999999999999999999999999999988764444444444333 478999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD--PRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+|+.+|+++++.+|+++. +|..|+.++.+.|+.++|+.+|++|++..+ |+....+|..|..|+..+|+.+++.++.
T Consensus 409 ~A~~~~e~al~~~p~~~~--~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHTTCHH--HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHH--HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999876 999999999999999999999999998743 3345779999999999999999999998
Q ss_pred HHHHHH
Q psy6461 684 RIKRSV 689 (703)
Q Consensus 684 ~~~~~~ 689 (703)
+.+...
T Consensus 487 ~r~~~~ 492 (530)
T 2ooe_A 487 KRRFTA 492 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=337.69 Aligned_cols=464 Identities=11% Similarity=0.175 Sum_probs=321.5
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh---HHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS---YEDVNN 93 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~A~~ 93 (703)
..||+.|..||.|.+.|..|++... .++++.++.+|++++..+|.+..+|..|+.++... +. ++.++.
T Consensus 53 ~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--------~~~~~~~~v~~ 124 (679)
T 4e6h_A 53 GKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--------MEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----------CCCHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--------CCcchHHHHHH
Confidence 5899999999999999999999888 88999999999999999999999999999986542 55 899999
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHhccCh--------HHHHHHHHHHHHhCCc-c-cccccHHHHHHHHHhc------
Q psy6461 94 TFERSLVFMH--KMPRIWLDYGRFLMDQHKI--------TQTRHVFDRALRALPI-T-QHHRVWPLYLSFVKSH------ 155 (703)
Q Consensus 94 ~~~~al~~~p--~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~al~~~p~-~-~~~~~~~~~~~~~~~~------ 155 (703)
+|++|+...| .++.+|..|+.+....++. +.++++|++||...+. + ..+.+|..|+.|+...
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999999984 6889999999988776553 4566999999986443 1 3467999999997642
Q ss_pred ---CChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccc
Q psy6461 156 ---AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232 (703)
Q Consensus 156 ---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~ 232 (703)
++.+.++++|++++.. |... ...+|..|..+......
T Consensus 205 eeq~~~~~~R~iy~raL~i-P~~~------------------------------------~~~~w~~Y~~fe~~~~~--- 244 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ-PMDC------------------------------------LESMWQRYTQWEQDVNQ--- 244 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CCSS------------------------------------HHHHHHHHHHHHHHHCT---
T ss_pred HHHhHHHHHHHHHHHHHhC-ccHH------------------------------------HHHHHHHHHHHHHhcCc---
Confidence 2234455555555532 2221 00111111111110000
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
.....+ +.....+++.|+..|...-..
T Consensus 245 -~~a~~~---------------------~~e~~~~y~~Ar~~~~e~~~~------------------------------- 271 (679)
T 4e6h_A 245 -LTARRH---------------------IGELSAQYMNARSLYQDWLNI------------------------------- 271 (679)
T ss_dssp -TTHHHH---------------------HHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred -chHHHH---------------------HHHhhHHHHHHHHHHHHHHHH-------------------------------
Confidence 000000 000001112222222110000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhc-CCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCc-cCCc
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQ-NPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKL-AVGK 390 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~ 390 (703)
.. .+.. .|.... . .....+|+.. ....
T Consensus 272 -------------------~~------------~l~r~~p~~~~-------------~-------~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 272 -------------------TK------------GLKRNLPITLN-------------Q-------ATESNLPKPNEYDVQ 300 (679)
T ss_dssp -------------------TT------------TCCCCCCSSST-------------T-------CCTTTSCCTTCCCHH
T ss_pred -------------------HH------------hHhhccccccc-------------c-------chhccCCCCchhHHH
Confidence 00 0000 010000 0 0000001100 0012
Q ss_pred hhHHHHHHHHHHHHcC-------ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHhcCCCC
Q psy6461 391 LHTLWIEFGKFYEVND-------QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAAL-RLMARATATPAR 462 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~ 462 (703)
...+|..|+.+....+ ..++.+.+|++|+..+|.++ .+|+.|+.++.+.|+.++|+ .+|++|+..+|.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~----~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP----EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 3578999998877654 24567789999999999887 99999999999999998996 999999999997
Q ss_pred CcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q psy6461 463 PVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQC 542 (703)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~a 542 (703)
. ..+|..|+.+++..|++ ++|+++|+++
T Consensus 377 s-----------------~~Lwl~~a~~ee~~~~~-----------------------------------e~aR~iyek~ 404 (679)
T 4e6h_A 377 S-----------------AVLAFSLSEQYELNTKI-----------------------------------PEIETTILSC 404 (679)
T ss_dssp C-----------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHH
T ss_pred C-----------------HHHHHHHHHHHHHhCCH-----------------------------------HHHHHHHHHH
Confidence 4 78999999999887775 8888888888
Q ss_pred HHhC-----------CCc---------chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Q psy6461 543 LEAC-----------PPR---------YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY 602 (703)
Q Consensus 543 l~~~-----------p~~---------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 602 (703)
+... |.+ ..+.+|+.++.++.+.|+.+.|+++|++|++..|.. ...+|..++.++...+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhC
Confidence 8752 431 114589999999999999999999999999873321 1346667777776654
Q ss_pred -CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-CCChHhHHHHHHHHHHcCCHHHHH
Q psy6461 603 -GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP-RVTAGFWAAWKSFEITHGNEDTMR 680 (703)
Q Consensus 603 -~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 680 (703)
+.+.|+.+|+++++.+|+++. +|+.|++++.+.|+.++||.+|++|++..++ +....+|..|.+||..+|+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~--~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGE--YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchH--HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 489999999999999998766 8999999999999999999999999998652 336889999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy6461 681 EMLRIKRSVQAQYN 694 (703)
Q Consensus 681 ~~~~~~~~~~~~~~ 694 (703)
++. .|.+..-|+
T Consensus 562 ~v~--~R~~~~~P~ 573 (679)
T 4e6h_A 562 TLE--KRFFEKFPE 573 (679)
T ss_dssp HHH--HHHHHHSTT
T ss_pred HHH--HHHHHhCCC
Confidence 998 444444444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=313.01 Aligned_cols=481 Identities=10% Similarity=0.025 Sum_probs=360.2
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHH
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPR 107 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 107 (703)
.+...|..++..+. .|++++|..+|++++...|++ ..|..++..+... |++++|...|++++.. |.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCT--------GDYARAKCLLTKEDLY-NRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHT--------TCHHHHHHHHHHTCGG-GTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHc--------CcHHHHHHHHHHHhcc-ccchh
Confidence 56788999998888 999999999999999999955 6677777776553 8999999999998765 77899
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-----------------cccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPIT-----------------QHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
+|..++.++...|++++|+.+|++. .|.. ....+|..++..+.+.|++++|+..|+++++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999963 4431 1367899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHH-hcCCHHHHHHHH-----HHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 171 LFPEDAEDYIEYLS-SIERLDEAAVKL-----AYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 171 ~~p~~~~~~~~~~~-~~~~~~~A~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
.+|++...+..+.. ............ ..+...+.. .....|...+ ...-..-....+..+++.++
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~---~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA------FLRSLYMLKL---NKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH------HHHHHHHTTS---CTTTTHHHHHHHHHHHHTST
T ss_pred hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH------HHHHHHHHHH---HHHcCcchHHHHHHHHHHhh
Confidence 99999887654431 111111111111 111000000 0000000000 00000000001122222222
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHH
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIEL 324 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (703)
.. + ....+|..++..|.+.|++++|..+|++++...|....
T Consensus 300 ~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------------- 340 (597)
T 2xpi_A 300 GL-E-KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD------------------------------------- 340 (597)
T ss_dssp TG-G-GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT-------------------------------------
T ss_pred cC-C-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH-------------------------------------
Confidence 22 1 33567888888888888888888888888876654321
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHH
Q psy6461 325 ELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFY 402 (703)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 402 (703)
.|..++.++ .|+.++|...|++++... | ....+|..++..+
T Consensus 341 -------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 341 -------------------------------VYPLHLASLHESGEKNKLYLISNDLVDRH-P-----EKAVTWLAVGIYY 383 (597)
T ss_dssp -------------------------------THHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-----TSHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c-----ccHHHHHHHHHHH
Confidence 111111111 188888999999988653 3 3467889999999
Q ss_pred HHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 403 EVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 403 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
...|++++|+.+|+++++..|.++ ..|..++.++.+.|++++|+.+|++++...|++ ..
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~ 442 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFG----PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----------------HL 442 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-----------------SH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----------------hH
Confidence 999999999999999999888887 889999999999999999999999999988874 67
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 483 LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE 562 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 562 (703)
.|..++.++...|++ ++|+++|+++++..|.+ +..|..++.++
T Consensus 443 ~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 485 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNI-----------------------------------LLANEYLQSSYALFQYD--PLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHHHCCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Confidence 788888887777665 99999999999999998 67899999999
Q ss_pred HHcCChHHHHHHHHHHhhccCc---ch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 563 EEHGLARHAMAVYERATGAVLP---EE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~---~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (703)
.+.|++++|..+|+++++..|. ++ ...+|...+..+...|++++|..+|+++++..|+++. +|..++.++.+.
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~ 563 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN--VHTAIALVYLHK 563 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH--HHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHh
Confidence 9999999999999999988432 11 1568888888888999999999999999999998765 899999999999
Q ss_pred CCHHHHHHHHHHHhcccCCCCChHhHHHHHHH
Q psy6461 638 GEIDRARAIYAHCSQICDPRVTAGFWAAWKSF 669 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 669 (703)
|++++|...|++++++. |+ ++..+..++..
T Consensus 564 g~~~~A~~~~~~~l~~~-p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 564 KIPGLAITHLHESLAIS-PN-EIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TT-CHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CC-ChHHHHHHHHH
Confidence 99999999999999994 44 46666666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=287.28 Aligned_cols=374 Identities=14% Similarity=0.170 Sum_probs=274.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++++|...|+++++.+|++...|..++...... |++++|...++++++.+|.++.+|..++.++...|++
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--------RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 78888888888888888888888887777766543 7788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
++|...|+++++..| .....|..++..+...|++++|+..|+++++.+|++.
T Consensus 84 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------- 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-------------------------- 135 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--------------------------
T ss_pred HHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------------------------
Confidence 888888888888888 3466777778888788888888888888887777663
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhc
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
..+..+|.++...|++++|...|++++...
T Consensus 136 --------------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 136 --------------------------------------------------CVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp --------------------------------------------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred --------------------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 356666777777777777777777766654
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh
Q psy6461 283 TTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR 362 (703)
Q Consensus 283 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 362 (703)
|+.. ..|..++.
T Consensus 166 p~~~--------------------------------------------------------------------~~~~~l~~ 177 (388)
T 1w3b_A 166 PNFA--------------------------------------------------------------------VAWSNLGC 177 (388)
T ss_dssp TTCH--------------------------------------------------------------------HHHHHHHH
T ss_pred CCCH--------------------------------------------------------------------HHHHHHHH
Confidence 4321 11111111
Q ss_pred hh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH
Q psy6461 363 LF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELE 440 (703)
Q Consensus 363 ~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 440 (703)
++ .|+.++|+..|++++.. .| ....+|..+|.++...|++++|+..|++++...|.++ .++..++.++
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~ 247 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTL-DP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----VVHGNLACVY 247 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH----HHHHHHHHHH
Confidence 11 16666677777776665 23 2456777788888888888888888888888877776 7777888888
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
...|++++|+..|+++++..|++ +..|..++.++...|++
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~~~~g~~----------------------- 287 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHF-----------------PDAYCNLANALKEKGSV----------------------- 287 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSC-----------------HHHHHHHHHHHHHHSCH-----------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCCCC-----------------HHHHHHHHHHHHHcCCH-----------------------
Confidence 88888888888888888887774 66777777776666654
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE 600 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 600 (703)
++|...|+++++..|++ +..|..++.++...|++++|+..|+++++..|++ ...+...+..+..
T Consensus 288 ------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 288 ------------AEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQ 351 (388)
T ss_dssp ------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHH
Confidence 78888888888888877 5677788888888888888888888888877766 3455555666666
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (703)
.|++++|...|+++++..|+++. ++..++.++...|
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~--a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFAD--AYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHH--HHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhCCCCHH--HHHhHHHHHHHcc
Confidence 77777777777777777777654 6666666666555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=300.99 Aligned_cols=424 Identities=17% Similarity=0.266 Sum_probs=322.7
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHH-
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYED- 90 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~- 90 (703)
+.+.+..|+++++.+|.+...|..++..+. .|++++|+.+|+++++.+| ++++|..|+.+..... |+++.
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~-------~~~~~a 99 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETK-------GKLPSY 99 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHT-------TTSTTH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHc-------cchhhH
Confidence 344567999999999999999999999998 9999999999999999999 7999999998765542 33444
Q ss_pred ---HHHHHHHHHHh---cCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 91 ---VNNTFERSLVF---MHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 91 ---A~~~~~~al~~---~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
++.+|++++.. +|.++.+|..++.++.. +|+++.|+.+|+++++ .|......+|..+..++...
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhh
Confidence 45699999876 46788999999999876 7899999999999999 78654567898888887555
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 156 AVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 156 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
|. ..+..++. ...+++..|+.++....
T Consensus 179 ~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~----------------------------------- 205 (530)
T 2ooe_A 179 NI-HLAKKMIE-----------------DRSRDYMNARRVAKEYE----------------------------------- 205 (530)
T ss_dssp CH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHH-----------------------------------
T ss_pred ch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHH-----------------------------------
Confidence 42 11111111 12234455554443321
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhh-cCCc----ccHHHHHHHHHHHHHHHHHHHHHHh
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQT-VTTV----RDFTQVFDAYAQFEELSLNKRMEEI 310 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~----~~~~~l~~~~~~~e~~~~~~~~~~~ 310 (703)
.....+++++.. .|+. .....+|..+..++...
T Consensus 206 ----------------------------------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~-------- 243 (530)
T 2ooe_A 206 ----------------------------------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN-------- 243 (530)
T ss_dssp ----------------------------------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC--------
T ss_pred ----------------------------------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC--------
Confidence 001111111110 1110 01123454454443320
Q ss_pred hhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCc----hhHHHHHHHHHHhcCCCc
Q psy6461 311 AENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKP----LDIIRTYTEAVKTVDPKL 386 (703)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~a~~~~~~a~~~~~~~~ 386 (703)
|.. .++. ..++..|++++...|
T Consensus 244 ----------------------------------------~~~-----------~~~~~~~~~~a~~~y~~al~~~p--- 269 (530)
T 2ooe_A 244 ----------------------------------------PLR-----------TEDQTLITKRVMFAYEQCLLVLG--- 269 (530)
T ss_dssp ----------------------------------------SSC-----------CSCSHHHHHHHHHHHHHHHHHHT---
T ss_pred ----------------------------------------Ccc-----------CCcchhHHHHHHHHHHHHHHhCC---
Confidence 000 0122 357788999998743
Q ss_pred cCCchhHHHHHHHHHHHH-------cCChH-------HHHHHHHHhhc-cCCCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 387 AVGKLHTLWIEFGKFYEV-------NDQLE-------DARLIFDKATL-VPYTKVEDLATVWCEWAELELRAGQEEAALR 451 (703)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 451 (703)
..+.+|+.++.++.. .|+++ +|+.+|+++++ ..|.++ .+|+.++.++.+.|++++|+.
T Consensus 270 ---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~----~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 270 ---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM----LLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhcCCHHHHHH
Confidence 368899999999986 68887 99999999997 788887 999999999999999999999
Q ss_pred HHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCC
Q psy6461 452 LMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTK 531 (703)
Q Consensus 452 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~ 531 (703)
+|+++++.+|.+ ...+|..++.++.+.|+.
T Consensus 343 ~~~~al~~~p~~----------------~~~~~~~~~~~~~~~~~~---------------------------------- 372 (530)
T 2ooe_A 343 IYNRLLAIEDID----------------PTLVYIQYMKFARRAEGI---------------------------------- 372 (530)
T ss_dssp HHHHHHHSSSSC----------------HHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHhCccccC----------------chHHHHHHHHHHHHhcCH----------------------------------
Confidence 999999999874 136899998888776654
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHH-HHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLE-EEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQI 610 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (703)
++|+++|+++++..|.. ...++..+.++ ...|++++|+.+|+++++.+|++ ..+|..|+.++...|+.++|+.+
T Consensus 373 -~~A~~~~~~Al~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~--~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 373 -KSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp -HHHHHHHHHHHTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTTTCHHHHHHH
T ss_pred -HHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC--HHHHHHHHHHHHhCCCHhhHHHH
Confidence 89999999999998876 35677766664 35899999999999999999987 57899999999999999999999
Q ss_pred HHHHHHhCCCcch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 611 YERAIESLPEEPT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 611 ~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
|+++++..|.++. ..+|..|+.++...|+.+.+..+++++++..|.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999876542 558999999999999999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=282.13 Aligned_cols=373 Identities=17% Similarity=0.178 Sum_probs=328.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...|+++++..|+++.++..++.++...|++++|...++++++..| .....|..++..+...|++++|+..|
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 45788999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhh
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (703)
+++++.+|++.
T Consensus 91 ~~al~~~p~~~--------------------------------------------------------------------- 101 (388)
T 1w3b_A 91 RHALRLKPDFI--------------------------------------------------------------------- 101 (388)
T ss_dssp HHHHHHCTTCH---------------------------------------------------------------------
T ss_pred HHHHHcCcchH---------------------------------------------------------------------
Confidence 99998888763
Q ss_pred hhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
..|..+|..+...|++++|...|++++...|+...
T Consensus 102 -------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------------------- 136 (388)
T 1w3b_A 102 -------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC-------------------------------------- 136 (388)
T ss_dssp -------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--------------------------------------
T ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------------------------------
Confidence 46888899999999999999999998887665331
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
.|..++.++ .|++++|+..|++++... | ....+|..++.++.
T Consensus 137 ------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 137 ------------------------------VRSDLGNLLKALGRLEEAKACYLKAIETQ-P-----NFAVAWSNLGCVFN 180 (388)
T ss_dssp ------------------------------HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHH
Confidence 111122211 289999999999999873 3 35779999999999
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
..|++++|+..|+++++.+|.++ ..|..++.++...|++++|...|++++...|++ ..+
T Consensus 181 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~ 239 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLDPNFL----DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----------------AVV 239 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-----------------HHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----------------HHH
Confidence 99999999999999999999987 899999999999999999999999999999985 788
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEE 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 563 (703)
|..++.++...|++ ++|...|+++++..|++ +.+|..++.++.
T Consensus 240 ~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 282 (388)
T 1w3b_A 240 HGNLACVYYEQGLI-----------------------------------DLAIDTYRRAIELQPHF--PDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHTCSSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Confidence 88888888777665 99999999999999998 679999999999
Q ss_pred HcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH
Q psy6461 564 EHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRA 643 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A 643 (703)
..|++++|+..|+++++..|.+ ...+...+..+...|++++|...|+++++..|+++. .+..++.++.+.|++++|
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA--AHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH--HHHHHHHHHHTTTCCHHH
T ss_pred HcCCHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999987 456677777788899999999999999999999765 899999999999999999
Q ss_pred HHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 644 RAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 644 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+..|++++++. |+ ....|..++......|
T Consensus 359 ~~~~~~a~~~~-p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIRIS-PT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTC-TT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhC-CC-CHHHHHhHHHHHHHcc
Confidence 99999999984 44 5788888877766655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=296.70 Aligned_cols=450 Identities=14% Similarity=0.161 Sum_probs=319.0
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCc---hhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcccCCCCch
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAP---KAIINTIYERSLKELP--GSYKLWYNYLKLRRKQVKGKVITDP 86 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~---~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~~~~~ 86 (703)
+...+..||+++..+|.+...|..|+..+. .+. ++.++.+|+|++...| .++++|..|+.+............+
T Consensus 82 ~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~ 161 (679)
T 4e6h_A 82 WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEE 161 (679)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccch
Confidence 344567999999999999999999999998 777 9999999999999995 7999999999987653111000012
Q ss_pred hHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHh---------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH
Q psy6461 87 SYEDVNNTFERSLVF----MHKMPRIWLDYGRFLMD---------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153 (703)
Q Consensus 87 ~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 153 (703)
..+.++++|++|+.. +|.+..+|..|+.++.. +++++.+|++|+++|. .|..+...+|..|..|+.
T Consensus 162 ~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~ 240 (679)
T 4e6h_A 162 ARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQ 240 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHH
Confidence 345678999999986 56688999999999864 4568899999999997 787677899999999986
Q ss_pred hcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhccccccc---ccCCchhhhHHHHHHHHhcCccc
Q psy6461 154 SHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVS---KHGKSNHQLWNELCEMISQNPDK 230 (703)
Q Consensus 154 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~w~~~~~~l~~~~~~ 230 (703)
..+.. .+.+.+.. ....|+.|+..+.+.-....-+. +....... ....|..
T Consensus 241 ~~~~~-~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--------~~~~p~~ 294 (679)
T 4e6h_A 241 DVNQL-TARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--------ESNLPKP 294 (679)
T ss_dssp HHCTT-THHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--------TTTSCCT
T ss_pred hcCcc-hHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccccch--------hccCCCC
Confidence 64322 23333221 11233344444433211000000 00000000 0000000
Q ss_pred cccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC-------chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Q psy6461 231 IRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG-------LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSL 303 (703)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~ 303 (703)
.... ......|..+++++...+ ..++.+.+|++++..+|.. ..+|..|+.++...
T Consensus 295 -~~~~-------------~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~---~~lW~~ya~~~~~~- 356 (679)
T 4e6h_A 295 -NEYD-------------VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA---PEIWFNMANYQGEK- 356 (679)
T ss_dssp -TCCC-------------HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH-
T ss_pred -chhH-------------HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhc-
Confidence 0000 011246777776655432 1234456666666655532 23444444443321
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHH-HHHHHHHHhc
Q psy6461 304 NKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDII-RTYTEAVKTV 382 (703)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~-~~~~~a~~~~ 382 (703)
|+.++|+ ++|++|+..+
T Consensus 357 --------------------------------------------------------------~~~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 357 --------------------------------------------------------------NTDSTVITKYLKLGQQCI 374 (679)
T ss_dssp --------------------------------------------------------------SCCTTHHHHHHHHHHHHC
T ss_pred --------------------------------------------------------------CcHHHHHHHHHHHHHHhC
Confidence 7777886 9999999876
Q ss_pred CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-----------CCCc-------chHHHHHHHHHHHHHHcC
Q psy6461 383 DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-----------YTKV-------EDLATVWCEWAELELRAG 444 (703)
Q Consensus 383 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~ 444 (703)
|. +..+|+.++.+++..|++++|+.+|++++... |.+. .....+|+.++.++.+.|
T Consensus 375 P~------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 375 PN------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 43 56799999999999999999999999999752 3210 123478999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
+.+.|+.+|.+|++..|.. ...+|..++.++...+.
T Consensus 449 ~l~~AR~vf~~A~~~~~~~----------------~~~lyi~~A~lE~~~~~---------------------------- 484 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLV----------------TPDIYLENAYIEYHISK---------------------------- 484 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGS----------------CTHHHHHHHHHHHTTTS----------------------------
T ss_pred CHHHHHHHHHHHHHhcCCC----------------ChHHHHHHHHHHHHhCC----------------------------
Confidence 9999999999999883321 25778887777765432
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc-chHHHHHHHHHHHHHHhcC
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP-EEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~ 603 (703)
+.++|+.+|+++++.+|++ +.+|+.|++++...|+.+.|+.+|++|+...|+ .....+|..|+.++.+.|+
T Consensus 485 ------d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 485 ------DTKTACKVLELGLKYFATD--GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp ------CCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred ------CHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 3599999999999999998 679999999999999999999999999999883 3346799999999999999
Q ss_pred chHHHHHHHHHHHhCCCcchHHHH
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMC 627 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~ 627 (703)
.+.++.+.+++++.+|+++...++
T Consensus 557 ~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHH
Confidence 999999999999999998764333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=294.08 Aligned_cols=468 Identities=10% Similarity=-0.007 Sum_probs=361.5
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc
Q psy6461 62 GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH 141 (703)
Q Consensus 62 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 141 (703)
.+...|...+...... |++++|..+|++++...|+ ...|..++.++...|++++|+.+|++++.. | .+
T Consensus 82 ~~~~~~~~~~~~~~~~--------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQ--------QQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-N--RS 149 (597)
T ss_dssp CHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-G--TC
T ss_pred HHHHHHHHHHHHHHHc--------cCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-c--cc
Confidence 5677888888776553 8899999999999999994 578899999999999999999999999764 4 34
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------------------HHHH---HHHHHhcCCHHHHHHHHHHh
Q psy6461 142 HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED-------------------AEDY---IEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------~~~~---~~~~~~~~~~~~A~~~~~~~ 199 (703)
..+|..++..+.+.|++++|+.+|++ ..|.. ...| +..+...|++++|+..|+++
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67899999999999999999999996 34443 3333 45568899999999999999
Q ss_pred hcccccccccCCchhhhHHHHHHHHhcCccccccccHHHH-HHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHH
Q psy6461 200 VNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAI-IRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEA 278 (703)
Q Consensus 200 ~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 278 (703)
+... +.....|..+..+......... .....+ +.......+.....++..++..|.+.|++++|+.+|+++
T Consensus 227 ~~~~-------p~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 227 LMVD-------AKCYEAFDQLVSNHLLTADEEW-DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHC-------TTCHHHHHHHHHTTCSCHHHHH-HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHhC-------chhhHHHHHHHHhhcccchhHH-HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 7432 2223333333322111110000 000000 011111111111223444566666667777777777665
Q ss_pred HhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHH
Q psy6461 279 IQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWH 358 (703)
Q Consensus 279 l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 358 (703)
+.. |.+...|.
T Consensus 299 ~~~---------------------------------------------------------------------~~~~~~~~ 309 (597)
T 2xpi_A 299 NGL---------------------------------------------------------------------EKSSDLLL 309 (597)
T ss_dssp TTG---------------------------------------------------------------------GGCHHHHH
T ss_pred hcC---------------------------------------------------------------------CchHHHHH
Confidence 543 23333444
Q ss_pred HHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHH
Q psy6461 359 KRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEW 436 (703)
Q Consensus 359 ~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (703)
.++..+ .|++++|+..|++++... | ....+|..++..+...|++++|..+|+++++..|.++ .+|..+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l 379 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID-P-----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA----VTWLAV 379 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH----HHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcC-c-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH----HHHHHH
Confidence 444332 289999999999998763 3 2355788999999999999999999999999888887 889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHH
Q psy6461 437 AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIW 516 (703)
Q Consensus 437 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~ 516 (703)
+.++.+.|++++|+.+|+++++..|++ ...|..++.++...|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~------------------- 423 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQF-----------------GPAWIGFAHSFAIEGEH------------------- 423 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH-------------------
Confidence 999999999999999999999998884 78899998888887765
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHH
Q psy6461 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIK 596 (703)
Q Consensus 517 ~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 596 (703)
++|..+|+++++..|++ ...|..++.++...|++++|..+|+++++..|.+ ...|...+.
T Consensus 424 ----------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~ 483 (597)
T 2xpi_A 424 ----------------DQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD--PLLLNELGV 483 (597)
T ss_dssp ----------------HHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHH
Confidence 99999999999999988 5699999999999999999999999999999987 457888888
Q ss_pred HHHHhcCchHHHHHHHHHHHhCCC---cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 597 KAAEIYGIPKTRQIYERAIESLPE---EPT--RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~---~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
.+.+.|++++|..+|+++++..|+ ++. ..+|..++.++.+.|++++|...|+++++..| + +..+|..++..+.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~-~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-N-DANVHTAIALVYL 561 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-C-CHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-C-ChHHHHHHHHHHH
Confidence 888999999999999999998421 232 45899999999999999999999999999854 3 5899999999999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q psy6461 672 THGNEDTMREMLRIKRSV 689 (703)
Q Consensus 672 ~~g~~~~~~~~~~~~~~~ 689 (703)
..|+.++|.+.++.+..+
T Consensus 562 ~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999655544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=269.78 Aligned_cols=440 Identities=12% Similarity=0.074 Sum_probs=327.9
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
..+.|...+..+. .|++++|...|+++++.+|.++..|..++..+... |++++|...|+++++.+|+++.+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST--------GDLEKVIEFTTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCchHHH
Confidence 5678888898888 99999999999999999999999999999888765 89999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH------HHHHH
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE------DYIEY 182 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~~ 182 (703)
|..++.++...|++++|...|+ ++...|.. ...+ .......+....|+..+++++...|.... ..+..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~--~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLNGDF--DGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC--ChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 9999999999999999999996 88888853 2222 22222334457899999999988776543 12222
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHH----
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSL---- 258 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 258 (703)
+....+.+.+...+...... .+. ....+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~-------~~~--------------------------------------~~~~~~~l~~~~ 204 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNY-------DTA--------------------------------------YALLSDALQRLY 204 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSS-------CSS--------------------------------------HHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhcccc-------ccH--------------------------------------HHHHHHHHHHHH
Confidence 33344444333332221100 000 00111111
Q ss_pred ----HHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 259 ----ADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 259 ----~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
+.+....|++++|..+|++++...|+... .+......
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~------------------------------------ 245 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDP---LRENAALA------------------------------------ 245 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH---HHHHHHHH------------------------------------
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch---hhHHHHHH------------------------------------
Confidence 33444567889999999999988776432 11111100
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
+..++. ...|++++|+..|++++... | . ..+|..+|.++...|++++|+
T Consensus 246 ----------------------~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~-----~-~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 246 ----------------------LCYTGIFHFLKNNLLDAQVLLQESINLH-P-----T-PNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp ----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-----C-HHHHHHHHHHTCCSSCCHHHH
T ss_pred ----------------------HHHHHHHHHhcccHHHHHHHHHHHHhcC-C-----C-chHHHHHHHHHHHhcCHHHHH
Confidence 001111 11388999999999999873 3 2 678999999999999999999
Q ss_pred HHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEE 492 (703)
Q Consensus 413 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
..|+++++..|.++ .+|..++.++...|++++|...|++++...|++ ...|..++.++.
T Consensus 297 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~~~la~~~~ 355 (537)
T 3fp2_A 297 KFFQKAVDLNPEYP----PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-----------------VYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------SHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHH
Confidence 99999999999887 899999999999999999999999999999985 677888888887
Q ss_pred hcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHH
Q psy6461 493 SFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAM 572 (703)
Q Consensus 493 ~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 572 (703)
..|++ ++|...|+++++..|++ +.+|..+|.++...|++++|.
T Consensus 356 ~~g~~-----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 356 KQGKF-----------------------------------TESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCH-----------------------------------HHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCH-----------------------------------HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHH
Confidence 77665 99999999999999998 569999999999999999999
Q ss_pred HHHHHHhhccCcchHH----HHHHHHHHHHHHh----------cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q psy6461 573 AVYERATGAVLPEEMF----EMFNIYIKKAAEI----------YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG 638 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~----~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (703)
..|++++...|.+... ..+......+... |++++|...|+++++..|+++. ++..++.++...|
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~g 476 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ--AKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhc
Confidence 9999999988765321 1222333444455 8999999999999999999875 8999999999999
Q ss_pred CHHHHHHHHHHHhcccCC
Q psy6461 639 EIDRARAIYAHCSQICDP 656 (703)
Q Consensus 639 ~~~~A~~~~~~a~~~~~~ 656 (703)
++++|+..|++++++.|.
T Consensus 477 ~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 477 KIDEAIELFEDSAILART 494 (537)
T ss_dssp CHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhCCC
Confidence 999999999999999554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-28 Score=262.70 Aligned_cols=457 Identities=10% Similarity=0.048 Sum_probs=330.4
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
..+.|...+..+. .|++++|...|+++++.+| ++..|..++..+... |++++|...|+++++.+|+++.+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~ 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSV--------GDLKKVVEMSTKALELKPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCSCCHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHH--------hhHHHHHHHHHHHhccChHHHHH
Confidence 3567888888777 8999999999999999999 688888888887665 88999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHH---HHHHHHHHHhhCCCCHHHH-----H
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPET---AVRVFRRYLKLFPEDAEDY-----I 180 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~p~~~~~~-----~ 180 (703)
|..++.++...|++++|...|++++...|.+ ................... +...++.+... |...... .
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFN--DASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC--GGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHH
Confidence 9999999999999999999999999988842 2222222222111111111 11111111111 1111000 0
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 181 EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
...............+. .....+. .. .+. .......+...|.
T Consensus 153 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~-~~----------~~~--~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFG-------------------------IFKPELT-FA----------NYD--ESNEADKELMNGL 194 (514)
T ss_dssp ----CCCCHHHHHHHHT-------------------------TSCCCCC-CS----------SCC--SSCHHHHHHHHHH
T ss_pred hhccCCchhHHHHHHHh-------------------------hcCHHHH-HH----------Hhc--CCcHHHHHHHHHH
Confidence 00000000000000000 0000000 00 000 0122467888888
Q ss_pred HHHH---hCchHHHHHHHHHHHh-----h--cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHH
Q psy6461 261 YYIR---SGLFERARDIYEEAIQ-----T--VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330 (703)
Q Consensus 261 ~~~~---~~~~~~A~~~~~~~l~-----~--~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (703)
.+.. .|++++|...|++++. . .|+..
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 230 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE-------------------------------------------- 230 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH--------------------------------------------
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc--------------------------------------------
Confidence 7776 8999999999999988 3 22211
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 331 LEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
..+|.+...|..++.++ .|++++|+..|++++... | . ..+|..+|.++...|++
T Consensus 231 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~-----~-~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 231 -----------------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-P-----R-VNSYIYMALIMADRNDS 286 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-C-----C-HHHHHHHHHHHHTSSCC
T ss_pred -----------------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-c-----c-HHHHHHHHHHHHHCCCH
Confidence 00122233333333322 389999999999999873 3 3 67899999999999999
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH
Q psy6461 409 EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA 488 (703)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (703)
++|+..|+++++..|.++ .+|..++.++...|++++|+..|++++...|.+ ...+..++
T Consensus 287 ~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~l~ 345 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNS----SVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-----------------IFPYIQLA 345 (514)
T ss_dssp TTGGGHHHHHHTTCTTCT----HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC-----------------SHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh-----------------HHHHHHHH
Confidence 999999999999999887 899999999999999999999999999999985 56777777
Q ss_pred HHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCh
Q psy6461 489 DLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLA 568 (703)
Q Consensus 489 ~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 568 (703)
.++...|++ ++|...|+++++..|++ +.+|..+|.++...|++
T Consensus 346 ~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 346 CLAYRENKF-----------------------------------DDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHTTTTTCH-----------------------------------HHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCH-----------------------------------HHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCH
Confidence 777666554 99999999999999998 56999999999999999
Q ss_pred HHHHHHHHHHhhccCcchH----HHHHHHHHHHHHH---hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q psy6461 569 RHAMAVYERATGAVLPEEM----FEMFNIYIKKAAE---IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEID 641 (703)
Q Consensus 569 ~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 641 (703)
++|...|++++...|.+.. ...+...+..+.. .|++++|...|+++++..|+++. .+..++.++.+.|+++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ--AKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHhcCHH
Confidence 9999999999999887643 2366677777778 89999999999999999998765 8999999999999999
Q ss_pred HHHHHHHHHhcccCCCCChHhHHHH
Q psy6461 642 RARAIYAHCSQICDPRVTAGFWAAW 666 (703)
Q Consensus 642 ~A~~~~~~a~~~~~~~~~~~~~~~~ 666 (703)
+|...|++++++.|. ++..+..+
T Consensus 467 ~A~~~~~~a~~~~~~--~~~~~~~~ 489 (514)
T 2gw1_A 467 EAITLFEESADLART--MEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHCSS--HHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cHHHHHHH
Confidence 999999999999543 46666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=254.72 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=148.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHH---------
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEW--------- 436 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------- 436 (703)
|++++|+..|++++...+ ..+.+|..+|.++...|++++|+..|++++...|.+. ..+..+
T Consensus 191 g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKN------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK----RCFAHYKQVKKLNKL 260 (450)
T ss_dssp TCGGGGHHHHHHHHHHHC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHHHHH
Confidence 666666666766666532 2456788889999999999999999999999888876 555544
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchH
Q psy6461 437 ---AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIF 513 (703)
Q Consensus 437 ---~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~ 513 (703)
+..+...|++++|+..|++++...|++... ...++..++.++...|+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------~~~~~~~l~~~~~~~g~----------------- 310 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKERICHCFSKDEK----------------- 310 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-------------HHHHHHHHHHHHHTTTC-----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH-------------HHHHHHHHHHHHHHCCC-----------------
Confidence 888899999999999999999999874100 02356666666666555
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHH
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNI 593 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 593 (703)
+++|...++++++..|++ +.+|..++.++...|++++|...|+++++..|++........
T Consensus 311 ------------------~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 ------------------PVEAIRVCSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 499999999999999998 679999999999999999999999999999999854333222
Q ss_pred HHHHHHH----------hc-----CchHHHHHHHH-HHHhCCCcc
Q psy6461 594 YIKKAAE----------IY-----GIPKTRQIYER-AIESLPEEP 622 (703)
Q Consensus 594 ~~~~~~~----------~~-----~~~~A~~~~~~-al~~~p~~~ 622 (703)
.+....+ .| ..++++..|.+ +++.+|++.
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 2221111 12 44566777775 777777653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=263.98 Aligned_cols=424 Identities=12% Similarity=0.066 Sum_probs=288.0
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhhcCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKKNAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
++..|..|++++...|. +++++++.+|+|++...| |+++|..|+++..... ...+.++
T Consensus 11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~-------~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVS-------QKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC-----------CTH
T ss_pred hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC-------chHHHHH
Confidence 66778889999998887 679999999999999999 9999999999987641 1235678
Q ss_pred HHHHHHHHh---cCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 93 NTFERSLVF---MHKMPRIWLDYGRFLMD----QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 93 ~~~~~al~~---~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
.+|++|+.. +|.++.+|..|+.++.. +++++.++++|++||+ .|..+...+|..|..++...+ ...+.+++
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~-~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELN-KITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhc-cccHHHHH
Confidence 899999987 57899999999999763 5788999999999999 787677889999999976644 22232222
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhh
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLR 245 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (703)
....
T Consensus 147 ~~~~---------------------------------------------------------------------------- 150 (493)
T 2uy1_A 147 GDTL---------------------------------------------------------------------------- 150 (493)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 2211
Q ss_pred hhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHH
Q psy6461 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELE 325 (703)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (703)
+.+..|+.+|+.+....+.. + ..+|..|..+|+..
T Consensus 151 --------------------~~y~~ar~~y~~~~~~~~~~-s-~~~W~~y~~~E~~~----------------------- 185 (493)
T 2uy1_A 151 --------------------PIFQSSFQRYQQIQPLIRGW-S-VKNAARLIDLEMEN----------------------- 185 (493)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTC-S-HHHHHHHHHHHHTC-----------------------
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhc-c-HHHHHHHHHHHhcC-----------------------
Confidence 11222333333333221110 0 13555555554321
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHc
Q psy6461 326 LRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN 405 (703)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 405 (703)
|..... .+....+..+|++++..++ ..+.+|+.|+.++...
T Consensus 186 -------------------------~~~~~~--------~~~~~Rv~~~ye~al~~~p------~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 186 -------------------------GMKLGG--------RPHESRMHFIHNYILDSFY------YAEEVYFFYSEYLIGI 226 (493)
T ss_dssp -------------------------TTCCCH--------HHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHT
T ss_pred -------------------------CccCcc--------hhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHc
Confidence 000000 0002346778999998753 3588999999999999
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWS 485 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
|+.++|+.+|++|+.. |.+. .+|+.++.+. .. ++....+..+........ ....+ ......+|.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~----~l~~~y~~~~-e~---~~~~~~l~~~~~~~~~~~---~~~~~----~~~~~~lw~ 290 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGM----FLSLYYGLVM-DE---EAVYGDLKRKYSMGEAES---AEKVF----SKELDLLRI 290 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSS----HHHHHHHHHT-TC---THHHHHHHHHTC-------------C----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCcH----HHHHHHHhhc-ch---hHHHHHHHHHHHhhccch---hhhhc----ccccHHHHH
Confidence 9999999999999999 9887 8898887762 11 111111111111111000 00000 000234455
Q ss_pred HHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 486 LYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 565 (703)
.|+.++.+.+ +.+.||.+|++| + .|.. ...+|+.+|.++...
T Consensus 291 ~y~~~~~r~~-----------------------------------~~~~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 291 NHLNYVLKKR-----------------------------------GLELFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYA 332 (493)
T ss_dssp HHHHHHHHHH-----------------------------------CHHHHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------------------------------CHHHHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHH
Confidence 5554444333 359999999999 3 4542 256899999998877
Q ss_pred C-ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q psy6461 566 G-LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRAR 644 (703)
Q Consensus 566 g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 644 (703)
| +.+.|+++|+++++.+|++ ..+|..|++++...|+.+.||.+|+++. . ...+|..|+.++...|+.+.++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~----k--~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE----K--TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC----C--BHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH----H--HHHHHHHHHHHHHHCCCHHHHH
Confidence 7 5999999999999998876 4568889999999999999999999983 2 3459999999999999999999
Q ss_pred HHHHHHhcccC---CCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 645 AIYAHCSQICD---PRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 645 ~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
.+++++++... .+.+..+.+.|..|++.+|++++..+-
T Consensus 405 ~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~ 445 (493)
T 2uy1_A 405 ELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDS 445 (493)
T ss_dssp HHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHH
Confidence 99999986432 233566779999999999987766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=252.02 Aligned_cols=236 Identities=10% Similarity=0.015 Sum_probs=180.9
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|++++|+..|++++... | ....++..+|.++...|++++|+..|+++++.+|.++ .+|..++.++...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-V-----WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT----EAFYKISTLYYQLGD 226 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhC-C-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Confidence 55555666666655542 2 2456788899999999999999999999999999887 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|+..|++++...|++ ...+..+..+.... .+...+..+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~-----------------~~~~~~~~~~~~~~--------------------~~~~~~~~~~- 268 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDH-----------------KRCFAHYKQVKKLN--------------------KLIESAEELI- 268 (450)
T ss_dssp HHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHH--------------------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHH--------------------HHHHHHHHHH-
Confidence 999999999999999985 45554442221100 0000000001
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYA--KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG 603 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 603 (703)
..|++++|...|+++++..|++.. ...+..++.++...|++++|+..+++++...|++ ..+|...+..+...|+
T Consensus 269 --~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 269 --RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN--VNALKDRAEAYLIEEM 344 (450)
T ss_dssp --HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred --HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHhcC
Confidence 135579999999999999999732 2478899999999999999999999999999987 4677778888888999
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HhcccC
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEM------------ETKLG-----EIDRARAIYAH-CSQICD 655 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~------------~~~~g-----~~~~A~~~~~~-a~~~~~ 655 (703)
+++|...|+++++..|+++. ++..++.+ +...| +.+++++.|++ +++..|
T Consensus 345 ~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQ--IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHH--HHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHhCcchHH--HHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999876 66666633 33345 56788999987 666643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=265.99 Aligned_cols=454 Identities=10% Similarity=0.026 Sum_probs=332.8
Q ss_pred CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc
Q psy6461 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH 142 (703)
Q Consensus 63 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 142 (703)
....|...+...... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+| .+.
T Consensus 24 ~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA--------KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHT--------TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCH
T ss_pred HHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chH
Confidence 346666666665553 8899999999999999999999999999999999999999999999999999 458
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHH
Q psy6461 143 RVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCE 222 (703)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 222 (703)
.+|..++.++...|++++|+..|+ ++..+|+....++..+...+...+|...+..++...+-....
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~------------- 159 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ------------- 159 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------C-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc-------------
Confidence 889999999999999999999996 888999887777666666777788888888876421100000
Q ss_pred HHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Q psy6461 223 MISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELS 302 (703)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~ 302 (703)
..|. ......+....+.+.+...+.+.....+. ...+......+....
T Consensus 160 ---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 160 ---VLPS--------------------------NTSLASFFGIFDSHLEVSSVNTSSNYDTA---YALLSDALQRLYSAT 207 (537)
T ss_dssp ---CCCC--------------------------HHHHHHHHHTSCHHHHHHTSCCCCSSCSS---HHHHHHHHHHHHTCS
T ss_pred ---ccch--------------------------HhHHHHHHHhcChHHHHHHHhhccccccH---HHHHHHHHHHHHHhh
Confidence 0000 00111233344444444443332222221 111111111110000
Q ss_pred HHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhc
Q psy6461 303 LNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTV 382 (703)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 382 (703)
...+... .+++++|+..|++++...
T Consensus 208 -------------------------~~~~~~a------------------------------~~~~~~A~~~~~~~l~~~ 232 (537)
T 3fp2_A 208 -------------------------DEGYLVA------------------------------NDLLTKSTDMYHSLLSAN 232 (537)
T ss_dssp -------------------------HHHHHHH------------------------------HHHHHHHHHHHHHHHC--
T ss_pred -------------------------hhhhHHH------------------------------HHHHHHHHHHHHHHHHHC
Confidence 0000000 145667888888887763
Q ss_pred CCCcc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q psy6461 383 DPKLA-VGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPA 461 (703)
Q Consensus 383 ~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 461 (703)
+.... ......++..+|.++...|++++|+..|+++++..|. + ..|..++.++...|++++|...|++++...|
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----hHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 22110 0112446788888999999999999999999999887 5 8899999999999999999999999999999
Q ss_pred CCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy6461 462 RPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQ 541 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~ 541 (703)
++ ..+|..++.++...|++ ++|...|++
T Consensus 308 ~~-----------------~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~ 335 (537)
T 3fp2_A 308 EY-----------------PPTYYHRGQMYFILQDY-----------------------------------KNAKEDFQK 335 (537)
T ss_dssp TC-----------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHH
T ss_pred CC-----------------HHHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHH
Confidence 85 78888888888877765 999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 542 CLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 542 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
+++..|++ ...|..++.++...|++++|...|+++++..|.+. .++..++..+...|++++|...|+++++..|++
T Consensus 336 a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999998 56899999999999999999999999999999884 466677778888999999999999999998765
Q ss_pred chH----HHHHHHHHHHHHc----------CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 622 PTR----QMCLKFAEMETKL----------GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 622 ~~~----~~~~~~a~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
+.. ..+...+.++... |++++|+..|+++++..| + +...|..++......|+.++|.+.++.+-
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-R-SEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 431 1355667888888 999999999999999954 4 58899999999999999999999987665
Q ss_pred HHH
Q psy6461 688 SVQ 690 (703)
Q Consensus 688 ~~~ 690 (703)
.+.
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=252.48 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHHHcCC-------hHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 392 HTLWIEFGKFYEVNDQ-------LEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
..+|..|+.+....+. .+++..+|++++...|..+ .+|+.|+.++.+.|+.+.|+.+|++|+.. |.+
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~----~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~- 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE----EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG- 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-
Confidence 4688888888764321 4567899999999999887 99999999999999999999999999999 884
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
..+|..|+.+... ++ ++++..... . ....+.+ ..
T Consensus 246 ----------------~~l~~~y~~~~e~-~~--~~~~l~~~~------------~--------~~~~~~~------~~- 279 (493)
T 2uy1_A 246 ----------------MFLSLYYGLVMDE-EA--VYGDLKRKY------------S--------MGEAESA------EK- 279 (493)
T ss_dssp ----------------SHHHHHHHHHTTC-TH--HHHHHHHHT------------C------------------------
T ss_pred ----------------HHHHHHHHhhcch-hH--HHHHHHHHH------------H--------hhccchh------hh-
Confidence 6788887766221 11 111111100 0 0000000 00
Q ss_pred hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhCCCcch
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIY-GIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 623 (703)
.+...+..+|+.|+.++.+.|+.+.|+++|++| + .|.. ...+|..++.++...+ +.+.||.+|+++++..|+++.
T Consensus 280 -~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 280 -VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred -hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 111112479999999999999999999999999 4 3432 2457777777777666 599999999999999998765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 624 RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
+|..|++++.+.|+.++||.+|+++.+ ...+|..|.+||..+|+.++++++++.+...-
T Consensus 356 --~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 356 --LKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999999832 48899999999999999999999998777644
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-26 Score=246.27 Aligned_cols=276 Identities=12% Similarity=0.078 Sum_probs=236.6
Q ss_pred CCcHHHHHHHHhh--h---cCCchhHHHHHHHHHHh----c--CCCcc--CCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 351 PHNVLEWHKRVRL--F---DGKPLDIIRTYTEAVKT----V--DPKLA--VGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 351 p~~~~~~~~~~~~--~---~~~~~~a~~~~~~a~~~----~--~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
|.+...|...+.. . .|++++|+..|++++.. . .|... .+....+|..+|.++...|++++|...|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5567777776653 2 48899999999999982 1 12111 134578999999999999999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
+++..|. + .+|..++.++...|++++|...+++++...|.+ ..+|..++.++...|++
T Consensus 263 ~l~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 263 AIELFPR-V----NSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-----------------SSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHCCC-H----HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-----------------THHHHHHHHHHHHTTCT
T ss_pred HHhhCcc-H----HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-----------------HHHHHHHHHHHHHhCCH
Confidence 9999887 5 899999999999999999999999999999985 67788888887776665
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYER 577 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 577 (703)
++|...|+++++..|.+ ...+..++.++...|++++|...|++
T Consensus 321 -----------------------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 321 -----------------------------------DQAGKDFDKAKELDPEN--IFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp -----------------------------------THHHHHHHHHHHTCSSC--SHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhChhh--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998 56999999999999999999999999
Q ss_pred HhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q psy6461 578 ATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT----RQMCLKFAEMETK---LGEIDRARAIYAHC 650 (703)
Q Consensus 578 al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~---~g~~~~A~~~~~~a 650 (703)
+++..|.+. ..+..++..+...|++++|...|+++++..|+++. ...+..++.++.. .|++++|...|+++
T Consensus 364 ~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 364 AKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 999999874 46667777778899999999999999999888753 3378999999999 99999999999999
Q ss_pred hcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy6461 651 SQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSV 689 (703)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 689 (703)
++.. |+ ....|..++......|+.++|.+.++.+-.+
T Consensus 442 ~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLD-PR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHC-TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9985 44 5889999999999999999999998665554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=222.63 Aligned_cols=336 Identities=11% Similarity=0.048 Sum_probs=241.0
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
++..|...|..+...|++++|...|+++++..| .++.+|..++.++...|++++|+..|+++++.+|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-------- 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT-------- 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--------
Confidence 467888999999999999999999999999999 4578888889998899999999999999988877763
Q ss_pred hcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHH
Q psy6461 185 SIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR 264 (703)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (703)
.+|..+|.++..
T Consensus 72 --------------------------------------------------------------------~~~~~l~~~~~~ 83 (359)
T 3ieg_A 72 --------------------------------------------------------------------AARLQRGHLLLK 83 (359)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------hHHHHHHHHHHH
Confidence 467888888999
Q ss_pred hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhh
Q psy6461 265 SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNS 344 (703)
Q Consensus 265 ~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (703)
.|++++|...|++++...|...+....+.......
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------------------------- 118 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD--------------------------------------------- 118 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999987762111111111110000
Q ss_pred hhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 345 VLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 345 ~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
....+...|..+...|++++|+..|+++++..|.
T Consensus 119 ----------------------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 119 ----------------------------------------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0112344455666667777777777777766666
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
++ .++..++.++...|++++|...+++++...|.+ ...|..++.++...|++
T Consensus 153 ~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~la~~~~~~~~~------- 204 (359)
T 3ieg_A 153 DA----ELRELRAECFIKEGEPRKAISDLKAASKLKSDN-----------------TEAFYKISTLYYQLGDH------- 204 (359)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC-----------------HHHHHHHHHHHHHHTCH-------
T ss_pred ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH-------
Confidence 65 666667777667777777777777777766663 55666666666555543
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHH------------HHHHHHHHHcCChHHHH
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLY------------LLYAKLEEEHGLARHAM 572 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------~~~a~~~~~~g~~~~A~ 572 (703)
++|...|+++++..|++ ...+ +..|.++...|++++|.
T Consensus 205 ----------------------------~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 205 ----------------------------ELSLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp ----------------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhhCccc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66677777777766665 2233 23466777888888888
Q ss_pred HHHHHHhhccCcchHH--HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 573 AVYERATGAVLPEEMF--EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
..++++++..|.+... .++......+...|++++|...|+++++..|+++. +|..++.++...|++++|...|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN--ALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888876432 23444556666788888888888888888888765 7888888888899999999999999
Q ss_pred hcccCCCCChHhHHHHHHHHH
Q psy6461 651 SQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~ 671 (703)
+++. |+ +..++..+.....
T Consensus 333 ~~~~-p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 333 QEHN-EN-DQQIREGLEKAQR 351 (359)
T ss_dssp HTTC-TT-CHHHHHHHHHHHH
T ss_pred HhcC-CC-ChHHHHHHHHHHH
Confidence 8884 44 4667766665544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-24 Score=223.06 Aligned_cols=347 Identities=9% Similarity=-0.012 Sum_probs=268.6
Q ss_pred CHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccccc
Q psy6461 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHH 142 (703)
Q Consensus 63 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 142 (703)
+++.|...+...... |++++|...|+++++..|+++.+|..++.++...|++++|...|+++++..|. ..
T Consensus 2 ~~~~~~~~~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA--------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FT 71 (359)
T ss_dssp HHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH
T ss_pred cHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cc
Confidence 466777777776654 89999999999999999999999999999999999999999999999999994 57
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHH
Q psy6461 143 RVWPLYLSFVKSHAVPETAVRVFRRYLKLFP---EDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNE 219 (703)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~ 219 (703)
.+|..++.++...|++++|+..|+++++.+| ++...+..+..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------- 116 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK----------------------------------- 116 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-----------------------------------
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH-----------------------------------
Confidence 8899999999999999999999999999998 55432221110
Q ss_pred HHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHH
Q psy6461 220 LCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE 299 (703)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e 299 (703)
+ .....+..+|..+...|++++|...|++++...|
T Consensus 117 ---~--------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------- 151 (359)
T 3ieg_A 117 ---A--------------------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCV---------------- 151 (359)
T ss_dssp ---H--------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred ---H--------------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------
Confidence 0 0012344455555566666666666555444322
Q ss_pred HHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHH
Q psy6461 300 ELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAV 379 (703)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 379 (703)
T Consensus 152 -------------------------------------------------------------------------------- 151 (359)
T 3ieg_A 152 -------------------------------------------------------------------------------- 151 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy6461 380 KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 459 (703)
..+.++..+|.++...|++++|+..|+++++..|.++ ..|..++.++...|++++|...|+++++.
T Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 152 ----------WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT----EAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1345677888888999999999999999999999887 88999999999999999999999999999
Q ss_pred CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHH
Q psy6461 460 PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLF 539 (703)
Q Consensus 460 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~ 539 (703)
.|++ ...|..+..+......+ . ........+++++|...|
T Consensus 218 ~~~~-----------------~~~~~~~~~~~~~~~~~--------------------~---~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 218 DQDH-----------------KRCFAHYKQVKKLNKLI--------------------E---SAEELIRDGRYTDATSKY 257 (359)
T ss_dssp CTTC-----------------HHHHHHHHHHHHHHHHH--------------------H---HHHHHHHTTCHHHHHHHH
T ss_pred Cccc-----------------hHHHHHHHHHHHHHHHH--------------------H---HHHHHHHcCCHHHHHHHH
Confidence 9885 45554443321110000 0 000011246679999999
Q ss_pred HHHHHhCCCcchH--HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q psy6461 540 EQCLEACPPRYAK--TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES 617 (703)
Q Consensus 540 ~~al~~~p~~~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (703)
+++++..|++... .++..+|.++...|++++|...|+++++..|.+ ..++...+..+...|++++|...|+++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN--VNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999997321 357788999999999999999999999999987 457777788888899999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHc
Q psy6461 618 LPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~~ 637 (703)
.|+++. ++..++.+....
T Consensus 336 ~p~~~~--~~~~l~~~~~~~ 353 (359)
T 3ieg_A 336 NENDQQ--IREGLEKAQRLL 353 (359)
T ss_dssp CTTCHH--HHHHHHHHHHHH
T ss_pred CCCChH--HHHHHHHHHHHH
Confidence 999876 666666655443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-23 Score=209.66 Aligned_cols=304 Identities=10% Similarity=0.036 Sum_probs=233.9
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.....+...|.+.+.+...+.... .|++++|...|+++++.+|.+...+..++...... |++++|...+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~ 81 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL--------NKANELFYLSHK 81 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH--------TCHHHHHHHHHH
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh--------hhHHHHHHHHHH
Confidence 344667778889999999998888 99999999999999999999999998888776654 889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQH-KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+++..|+++.+|..++.++...| ++++|...|+++++..| .....|..++.++...|++++|+..|+++++..|.+.
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 159 (330)
T 3hym_B 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH 159 (330)
T ss_dssp HHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS
T ss_pred HHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH
Confidence 99999999999999999999999 99999999999999999 4578899999999999999999999999998887764
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHH
Q psy6461 177 EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWN 256 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (703)
. .+.
T Consensus 160 ~----------------------------------------------------------------------------~~~ 163 (330)
T 3hym_B 160 L----------------------------------------------------------------------------PML 163 (330)
T ss_dssp H----------------------------------------------------------------------------HHH
T ss_pred H----------------------------------------------------------------------------HHH
Confidence 2 344
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHh
Q psy6461 257 SLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLME 336 (703)
Q Consensus 257 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (703)
.+|..+...|++++|...|++++...|...
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------------------- 193 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDP-------------------------------------------------- 193 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCH--------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCCh--------------------------------------------------
Confidence 455666666666666666666655544321
Q ss_pred hhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCc---cCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 337 RRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKL---AVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 337 ~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
..|..++.+ ..|++++|+..|++++...+... ..+..+.+|..+|.++...|++++|
T Consensus 194 ------------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 194 ------------------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp ------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 111111111 11556666666666665532111 1133467899999999999999999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHH
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLE 491 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (703)
+..|+++++..|.++ .+|..++.++...|++++|...|+++++..|++ ...+..++..+
T Consensus 256 ~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-----------------TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-----------------hHHHHHHHHHH
Confidence 999999999999987 899999999999999999999999999999985 77888888766
Q ss_pred -HhcCCh
Q psy6461 492 -ESFGTF 497 (703)
Q Consensus 492 -~~~~~~ 497 (703)
...|+.
T Consensus 315 ~~~~g~~ 321 (330)
T 3hym_B 315 EMYIGDS 321 (330)
T ss_dssp HTTTTC-
T ss_pred HHHhCch
Confidence 455553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-23 Score=221.23 Aligned_cols=385 Identities=12% Similarity=0.063 Sum_probs=237.7
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKE---------LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~---------~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 99 (703)
....+..++..+. .|++++|++.|++|++. +|.....|..++..+... |++++|...|++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--------g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--------GRLSDVQIYVDKVK 121 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHH
Confidence 3456677887777 99999999999999986 677778888888776654 89999999999999
Q ss_pred Hhc--------CCCHHHHHHHHHHHHh--ccChHHHHHHHHHHHHhCCcccccccHHHHHHHH---HhcCChHHHHHHHH
Q psy6461 100 VFM--------HKMPRIWLDYGRFLMD--QHKITQTRHVFDRALRALPITQHHRVWPLYLSFV---KSHAVPETAVRVFR 166 (703)
Q Consensus 100 ~~~--------p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~ 166 (703)
+.. +..+.++...+..+.. .+++++|...|+++++.+| .++.++..++... ...++.++|+..|+
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--KNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 874 3456777777766554 4578999999999999999 4577777776553 34577788999999
Q ss_pred HHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhh
Q psy6461 167 RYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRR 246 (703)
Q Consensus 167 ~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (703)
++++.+|++...+..+.
T Consensus 200 ~al~l~p~~~~~~~~l~--------------------------------------------------------------- 216 (472)
T 4g1t_A 200 QAIRLNPDNQYLKVLLA--------------------------------------------------------------- 216 (472)
T ss_dssp HHHHHCSSCHHHHHHHH---------------------------------------------------------------
T ss_pred HHhhcCCcchHHHHHHH---------------------------------------------------------------
Confidence 99999988864332211
Q ss_pred hccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 247 YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
..++.++...+++++|...|++++...|...
T Consensus 217 ---------~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~---------------------------------------- 247 (472)
T 4g1t_A 217 ---------LKLHKMREEGEEEGEGEKLVEEALEKAPGVT---------------------------------------- 247 (472)
T ss_dssp ---------HHHHHCC------CHHHHHHHHHHHHCSSCH----------------------------------------
T ss_pred ---------HHHHHHHhhhhHHHHHHHHHHHHHHhCccHH----------------------------------------
Confidence 1111112223444455555555444333211
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
..|..++.++ .|+.++|+..|++++... | ....++..+|.+|..
T Consensus 248 ----------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 248 ----------------------------DVLRSAAKFYRRKDEPDKAIELLKKALEYI-P-----NNAYLHCQIGCCYRA 293 (472)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T-----TCHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHH
Confidence 0000000000 133344444444444331 1 123445555554432
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
.+....+... ...+......+.++.|...|++++...|.. ...+
T Consensus 294 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------~~~~ 337 (472)
T 4g1t_A 294 KVFQVMNLRE-------------------NGMYGKRKLLELIGHAVAHLKKADEANDNL-----------------FRVC 337 (472)
T ss_dssp HHHHHHHC-------------------------CHHHHHHHHHHHHHHHHHHHHHCTTT-----------------CCCH
T ss_pred HHHHhhhHHH-------------------HHHHHHHHHHhhHHHHHHHHHHHhhcCCch-----------------hhhh
Confidence 2111100000 000001111234677888888888888874 4556
Q ss_pred HHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch-HHHHHHHHHHH-
Q psy6461 485 SLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA-KTLYLLYAKLE- 562 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~a~~~- 562 (703)
...+.++...|++ ++|...|+++++..|++.. ..++..++.+.
T Consensus 338 ~~lg~~~~~~~~~-----------------------------------~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 338 SILASLHALADQY-----------------------------------EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp HHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhccH-----------------------------------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 6677776666654 9999999999999887632 23566777653
Q ss_pred HHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q psy6461 563 EEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (703)
...|++++|+..|+++++..|++... .+....+..+++++++.+|+++. .|..++.++...|++++
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~------------~~~~~~l~~~~~~~l~~~p~~~~--~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREK------------EKMKDKLQKIAKMRLSKNGADSE--ALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHH------------HHHHHHHHHHHHHHHHHCC-CTT--HHHHHHHHHHHHHHCC-
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHH------------HHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHH
Confidence 46789999999999999999986311 12334567788999999999877 89999999999999999
Q ss_pred HHHHHHHHhcccC
Q psy6461 643 ARAIYAHCSQICD 655 (703)
Q Consensus 643 A~~~~~~a~~~~~ 655 (703)
|+..|++|++..+
T Consensus 449 A~~~y~kALe~~~ 461 (472)
T 4g1t_A 449 ADEDSERGLESGS 461 (472)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999843
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-22 Score=204.96 Aligned_cols=299 Identities=11% Similarity=0.100 Sum_probs=215.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 96 ERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 96 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
...+...|+++.++...+..+...|++++|..+|+++++..|. +...+..++.++...|++++|+..++++++.+|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 3555667888888999999999999999999999999999984 46777777788888888999999998888877766
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHH
Q psy6461 176 AEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLW 255 (703)
Q Consensus 176 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (703)
. .+|
T Consensus 90 ~----------------------------------------------------------------------------~~~ 93 (330)
T 3hym_B 90 P----------------------------------------------------------------------------VSW 93 (330)
T ss_dssp T----------------------------------------------------------------------------HHH
T ss_pred H----------------------------------------------------------------------------HHH
Confidence 3 467
Q ss_pred HHHHHHHHHhC-chHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHH
Q psy6461 256 NSLADYYIRSG-LFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDL 334 (703)
Q Consensus 256 ~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (703)
..+|..+...| ++++|...|++++...|.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------------------------------- 123 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-------------------------------------------------- 123 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT--------------------------------------------------
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc--------------------------------------------------
Confidence 77788888888 788888888776654332
Q ss_pred HhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHH
Q psy6461 335 MERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLI 414 (703)
Q Consensus 335 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 414 (703)
.+.+|..+|.++...|++++|+..
T Consensus 124 --------------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 124 --------------------------------------------------------YGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp --------------------------------------------------------CTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------------------------------------------------------cHHHHHHHHHHHHHccCHHHHHHH
Confidence 123466667777777788888888
Q ss_pred HHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 415 FDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 415 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
|+++++..|.+. ..+..++.++...|++++|...+++++...|++ ..+|..++.++...
T Consensus 148 ~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----------------~~~~~~l~~~~~~~ 206 (330)
T 3hym_B 148 YFTAAQLMKGCH----LPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-----------------PFVMHEVGVVAFQN 206 (330)
T ss_dssp HHHHHHHTTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----------------HHHHHHHHHHHHHT
T ss_pred HHHHHHhccccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHc
Confidence 888887777766 667777777778888888888888888887774 66777777776666
Q ss_pred CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC---------CCcchHHHHHHHHHHHHHc
Q psy6461 495 GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC---------PPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 495 ~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~~~a~~~~~~ 565 (703)
|++ ++|...|+++++.. |.. ..+|..+|.++...
T Consensus 207 ~~~-----------------------------------~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 249 (330)
T 3hym_B 207 GEW-----------------------------------KTAEKWFLDALEKIKAIGNEVTVDKW--EPLLNNLGHVCRKL 249 (330)
T ss_dssp TCH-----------------------------------HHHHHHHHHHHHHHTTTSCSCTTTTC--CHHHHHHHHHHHHT
T ss_pred ccH-----------------------------------HHHHHHHHHHHHHhhhccccccccHH--HHHHHHHHHHHHHh
Confidence 554 77788888877765 333 35788888888888
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHH-HHcCCH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME-TKLGEI 640 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~ 640 (703)
|++++|+..|+++++..|.+. ..+......+...|++++|...|+++++..|+++. .+..++..+ ...|+.
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNA--STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF--SVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH--HHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHHHHHHhhCccch--HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH--HHHHHHHHHHHHhCch
Confidence 888888888888887777653 34555555555667777777777777777776654 566666544 344443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=205.94 Aligned_cols=236 Identities=16% Similarity=0.295 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHHc----CCh----HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH-------cCCH-------HH
Q psy6461 391 LHTLWIEFGKFYEVN----DQL----EDARLIFDKATLVPYTKVEDLATVWCEWAELELR-------AGQE-------EA 448 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~----~~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~ 448 (703)
...+|..|+.+.... ++. ++|+.+|++++..+|.++ .+|+.++.++.. .|++ ++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhchhhhhccchhhcccchHH
Confidence 456888888887754 233 789999999999999998 999999999864 4775 99
Q ss_pred HHHHHHHHhc-CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHh
Q psy6461 449 ALRLMARATA-TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527 (703)
Q Consensus 449 A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~ 527 (703)
|+.+|++|+. .+|++ ..+|..++.++...|++
T Consensus 83 A~~~~~rAl~~~~p~~-----------------~~~~~~~~~~~~~~~~~------------------------------ 115 (308)
T 2ond_A 83 AANIYERAISTLLKKN-----------------MLLYFAYADYEESRMKY------------------------------ 115 (308)
T ss_dssp HHHHHHHHHTTTTTTC-----------------HHHHHHHHHHHHHTTCH------------------------------
T ss_pred HHHHHHHHHHHhCccc-----------------HHHHHHHHHHHHhcCCH------------------------------
Confidence 9999999999 68884 78999999999887765
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHH-HHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCch
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKT-LYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGIP 605 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~ 605 (703)
++|+.+|+++++..|.+ +. +|..++.++.+.|++++|+.+|+++++..|.+ ..+|..++.++.. .|+++
T Consensus 116 -----~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 116 -----EKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR--HHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp -----HHHHHHHHHHHTSSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSCCHH
T ss_pred -----HHHHHHHHHHHhccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHH
Confidence 99999999999999987 44 89999999999999999999999999998876 3456666666544 58999
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc--CCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC--DPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+|+.+|+++++.+|+++. +|..++.++.+.|++++|+.+|++|++.+ +|+....+|..|+.++...|+.+.+..++
T Consensus 187 ~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999765 99999999999999999999999999963 55557899999999999999999999888
Q ss_pred HHHHH
Q psy6461 684 RIKRS 688 (703)
Q Consensus 684 ~~~~~ 688 (703)
+.+..
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=210.49 Aligned_cols=402 Identities=10% Similarity=-0.009 Sum_probs=262.9
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc-------cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT-------QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
...++..+|.++..+|++++|...|++|++..+.. .....|..++.++...|++++|+..|++++++.|...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~- 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS- 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc-
Confidence 35778888999999999999999999998863310 1234466677777778888888888777776543221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHH
Q psy6461 178 DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNS 257 (703)
Q Consensus 178 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (703)
.+..+ ..+.++..
T Consensus 129 -------------------------------------------------~~~~~------------------~~~~~~~~ 141 (472)
T 4g1t_A 129 -------------------------------------------------SPYRI------------------ESPELDCE 141 (472)
T ss_dssp -------------------------------------------------CSSCC------------------CCHHHHHH
T ss_pred -------------------------------------------------cccch------------------hhHHHHHH
Confidence 00000 11244555
Q ss_pred HHHHHHH--hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHH
Q psy6461 258 LADYYIR--SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLM 335 (703)
Q Consensus 258 l~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (703)
.|..+.. .+++++|+..|++++...|+...+ +..+...... +..
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~---~~~~~~~~~~-----------------------------l~~-- 187 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF---TSGLAIASYR-----------------------------LDN-- 187 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH---HHHHHHHHHH-----------------------------HHH--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHH-----------------------------hcC--
Confidence 5544444 457999999999999988764421 1111110000 000
Q ss_pred hhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH----HcCChHHH
Q psy6461 336 ERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE----VNDQLEDA 411 (703)
Q Consensus 336 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~A 411 (703)
.++.++|++.|++++... | ..+.++..++..+. ..|++++|
T Consensus 188 -----------------------------~~~~~~al~~~~~al~l~-p-----~~~~~~~~l~~~~~~~~~~~~~~~~a 232 (472)
T 4g1t_A 188 -----------------------------WPPSQNAIDPLRQAIRLN-P-----DNQYLKVLLALKLHKMREEGEEEGEG 232 (472)
T ss_dssp -----------------------------SCCCCCTHHHHHHHHHHC-S-----SCHHHHHHHHHHHHHCC------CHH
T ss_pred -----------------------------chHHHHHHHHHHHHhhcC-C-----cchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 166778899999998873 3 24556666654443 56788999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHH
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLE 491 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (703)
...|++++...|.++ .++..++.++...|++++|...|+++++..|++ ..++...+.++
T Consensus 233 ~~~~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~y 291 (472)
T 4g1t_A 233 EKLVEEALEKAPGVT----DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN-----------------AYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHH
Confidence 999999999999887 889999999999999999999999999999985 67777777665
Q ss_pred HhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHH
Q psy6461 492 ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHA 571 (703)
Q Consensus 492 ~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A 571 (703)
...+.. ........ ... ..... ...++|...|+++++.+|.+ ...+..+|.++...|++++|
T Consensus 292 ~~~~~~---~~~~~~~~-~~~-------~~~~~-----~~~~~A~~~~~~a~~~~~~~--~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 292 RAKVFQ---VMNLRENG-MYG-------KRKLL-----ELIGHAVAHLKKADEANDNL--FRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHH---HHHC-------C-------HHHHH-----HHHHHHHHHHHHHHHHCTTT--CCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHH---hhhHHHHH-HHH-------HHHHH-----hhHHHHHHHHHHHhhcCCch--hhhhhhHHHHHHHhccHHHH
Confidence 433211 00000000 000 00001 12488999999999999998 45899999999999999999
Q ss_pred HHHHHHHhhccCcchH-HHHHHHHHHHH-HHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 572 MAVYERATGAVLPEEM-FEMFNIYIKKA-AEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAH 649 (703)
Q Consensus 572 ~~~~~~al~~~p~~~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (703)
+..|++++...|++.. ..++..+..+. ...|++++|...|+++++..|++... .+....+..++++
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------------~~~~~~l~~~~~~ 421 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------------EKMKDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH------------HHHHHHHHHHHHH
Confidence 9999999999887642 23444454443 34688999999999999999987541 2234566778889
Q ss_pred HhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6461 650 CSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYNTQ 696 (703)
Q Consensus 650 a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 696 (703)
+++..|. ++..|..++.+....|+.++|.+.++++-.+....++.
T Consensus 422 ~l~~~p~--~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 422 RLSKNGA--DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHCC---CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 9988544 58899999999999999999999998887776665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=201.79 Aligned_cols=240 Identities=16% Similarity=0.257 Sum_probs=206.4
Q ss_pred CCcHHHHHHHHhhhcCC------c----hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH-------cCCh-----
Q psy6461 351 PHNVLEWHKRVRLFDGK------P----LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV-------NDQL----- 408 (703)
Q Consensus 351 p~~~~~~~~~~~~~~~~------~----~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~----- 408 (703)
|.....|..++.+...+ . .+|+..|++++...| .++.+|+.+|.++.. .|++
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p------~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~ 78 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhchhhhhccchhhccc
Confidence 45667888888875432 2 578899999999743 468899999999874 4886
Q ss_pred --HHHHHHHHHhhc-cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH-HH
Q psy6461 409 --EDARLIFDKATL-VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK-LW 484 (703)
Q Consensus 409 --~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 484 (703)
++|+.+|+++++ .+|.+. .+|..++.++.+.|++++|+.+|+++++..|.+ .. +|
T Consensus 79 ~~~~A~~~~~rAl~~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~ 137 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKKNM----LLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----------------PTLVY 137 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----------------THHHH
T ss_pred chHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC-----------------ccHHH
Confidence 999999999999 689887 899999999999999999999999999999975 44 89
Q ss_pred HHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q psy6461 485 SLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 564 (703)
..++.++.+.|++ ++|+.+|+++++..|.+ ..+|+.++.++..
T Consensus 138 ~~~~~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~ 180 (308)
T 2ond_A 138 IQYMKFARRAEGI-----------------------------------KSGRMIFKKAREDARTR--HHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHHCH-----------------------------------HHHHHHHHHHHTSTTCC--THHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHH
Confidence 9999888877665 99999999999999987 5688888888665
Q ss_pred -cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHcCCH
Q psy6461 565 -HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES---LPEEPTRQMCLKFAEMETKLGEI 640 (703)
Q Consensus 565 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~a~~~~~~g~~ 640 (703)
.|++++|+.+|+++++.+|++ ..+|..++.++...|++++|+.+|+++++. .|++ ...+|..++.++.+.|+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-SGEIWARFLAFESNIGDL 257 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG-CHHHHHHHHHHHHHHSCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHcCCH
Confidence 699999999999999999987 678999999999999999999999999996 3332 244999999999999999
Q ss_pred HHHHHHHHHHhcccCCC
Q psy6461 641 DRARAIYAHCSQICDPR 657 (703)
Q Consensus 641 ~~A~~~~~~a~~~~~~~ 657 (703)
+.|..+++++++..|.+
T Consensus 258 ~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 258 ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcccc
Confidence 99999999999987654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=207.14 Aligned_cols=206 Identities=12% Similarity=0.005 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA------------TVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
.+|..+|.++...|++++|+..|++++...|.+..... ..+..++.++ ..|++++|+..|++++...
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~ 211 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD 211 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC
Confidence 34555666666666666666666666666665541100 0111233333 6667777777777777776
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~ 540 (703)
|... ...++..++.++...|++ ++|+..|+
T Consensus 212 p~~~---------------~~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~ 241 (368)
T 1fch_A 212 PTSI---------------DPDVQCGLGVLFNLSGEY-----------------------------------DKAVDCFT 241 (368)
T ss_dssp TTSC---------------CHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHH
T ss_pred cCcc---------------cHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHH
Confidence 6520 145666666666555543 77777777
Q ss_pred HHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 541 QCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 541 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
++++..|++ +.+|..+|.++...|++++|+..|++++...|.+ ...+...+..+...|++++|...|+++++..|+
T Consensus 242 ~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 242 AALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY--IRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 777777766 4567777777777777777777777777777665 344555555666667777777777777777665
Q ss_pred cch---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 621 EPT---------RQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 621 ~~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+.. ..+|..++.++...|+.++|..+++++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 510 236777777777777777777777666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=207.59 Aligned_cols=306 Identities=15% Similarity=0.164 Sum_probs=223.2
Q ss_pred hhHHHHHH-HHHHHHHhcCCCH----HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHH
Q psy6461 86 PSYEDVNN-TFERSLVFMHKMP----RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPET 160 (703)
Q Consensus 86 ~~~~~A~~-~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 160 (703)
|++++|.. .|++++...|+++ ..|...+.++...|++++|...|+++++..| .+..+|..++.++...|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHH
Confidence 56777777 8888887777664 4577888888888888888888888888888 446777778888888888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHH
Q psy6461 161 AVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAII 240 (703)
Q Consensus 161 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 240 (703)
|+..|+++++.+|.+.
T Consensus 117 A~~~~~~al~~~~~~~---------------------------------------------------------------- 132 (368)
T 1fch_A 117 AISALRRCLELKPDNQ---------------------------------------------------------------- 132 (368)
T ss_dssp HHHHHHHHHHHCTTCH----------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCH----------------------------------------------------------------
Confidence 8888888887776652
Q ss_pred HhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcc
Q psy6461 241 RGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEED 320 (703)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 320 (703)
.+|..+|.++...|++++|...|++++...|........ .
T Consensus 133 ------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~------------------------- 172 (368)
T 1fch_A 133 ------------TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP---A------------------------- 172 (368)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------
T ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH---H-------------------------
Confidence 578888899999999999999999999877653311000 0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHH
Q psy6461 321 DIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGK 400 (703)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 400 (703)
+.. .... .+ ...+..++.
T Consensus 173 ---------------------------------------------~~~-------~~~~---~~-------~~~~~~~~~ 190 (368)
T 1fch_A 173 ---------------------------------------------EEG-------AGGA---GL-------GPSKRILGS 190 (368)
T ss_dssp ---------------------------------------------------------------------------CTTHH
T ss_pred ---------------------------------------------HHH-------hhhh---cc-------cHHHHHHHH
Confidence 000 0000 00 001122344
Q ss_pred HHHHcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHH
Q psy6461 401 FYEVNDQLEDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVY 478 (703)
Q Consensus 401 ~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 478 (703)
++ ..|++++|+..|+++++..|. ++ .++..++.++...|++++|+..|++++...|++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------- 250 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND--------------- 250 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 44 678888888888888888887 54 788888888888888999999998888888874
Q ss_pred hhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 479 KSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLY 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 558 (703)
...|..++.++...|++ ++|+..|+++++..|++ ..+|..+
T Consensus 251 --~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~~~~--~~~~~~l 291 (368)
T 1fch_A 251 --YLLWNKLGATLANGNQS-----------------------------------EEAVAAYRRALELQPGY--IRSRYNL 291 (368)
T ss_dssp --HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCc--HHHHHHH
Confidence 67787877777776664 88888888888888887 5688888
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCcch---------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q psy6461 559 AKLEEEHGLARHAMAVYERATGAVLPEE---------MFEMFNIYIKKAAEIYGIPKTRQIYERAIESL 618 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (703)
|.++...|++++|+..|++++...|++. ...+|..+...+...|+.+.|..++.++++..
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 8888888999999999998888877651 14577777888888888888888888777653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=205.24 Aligned_cols=305 Identities=13% Similarity=0.080 Sum_probs=227.3
Q ss_pred HHHHHHHHHhcCCCHH----HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHH
Q psy6461 92 NNTFERSLVFMHKMPR----IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRR 167 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 167 (703)
...+.++....|.++. .|+..|..+...|++++|...|+++++..| .+..+|..++.++...|++++|+..|++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555555565554 489999999999999999999999999999 4578889999999899999999999999
Q ss_pred HHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhh
Q psy6461 168 YLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRY 247 (703)
Q Consensus 168 ~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (703)
+++.+|.+.
T Consensus 125 al~~~p~~~----------------------------------------------------------------------- 133 (365)
T 4eqf_A 125 CLELQPNNL----------------------------------------------------------------------- 133 (365)
T ss_dssp HHHHCTTCH-----------------------------------------------------------------------
T ss_pred HHhcCCCCH-----------------------------------------------------------------------
Confidence 998877763
Q ss_pred ccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHH
Q psy6461 248 TDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELR 327 (703)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (703)
.+|..+|.+|...|++++|...|++++...|+.... +
T Consensus 134 -----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~----------------------------------- 170 (365)
T 4eqf_A 134 -----KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL---V----------------------------------- 170 (365)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------
T ss_pred -----HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH---H-----------------------------------
Confidence 578888999999999999999999999865531110 0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC
Q psy6461 328 LARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ 407 (703)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 407 (703)
..+ + ....++..++..+...|+
T Consensus 171 ------------------------------~~~-----~-----------------------~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 171 ------------------------------KNK-----K-----------------------GSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp ----------------------------------------------------------------------------CCHH
T ss_pred ------------------------------hhh-----c-----------------------cchHHHHHHHHHHhhhhh
Confidence 000 0 012234566778888999
Q ss_pred hHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHH
Q psy6461 408 LEDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWS 485 (703)
Q Consensus 408 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
+++|+..|+++++..|. ++ .+|..++.++...|++++|+..|+++++..|++ ..+|.
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~ 251 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDP----DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED-----------------YSLWN 251 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHH
Confidence 99999999999999888 65 789999999999999999999999999999884 78888
Q ss_pred HHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 486 LYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 565 (703)
.++.++...|++ ++|+..|+++++..|++ +.+|..+|.++...
T Consensus 252 ~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 252 RLGATLANGDRS-----------------------------------EEAVEAYTRALEIQPGF--IRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHC
Confidence 888888877665 89999999999999998 67899999999999
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
|++++|+..|++++...|++.... . . ..+. ....+|..++.++...|+.+.|..
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~-------------~-----------~-~~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQ-------------Q-----------V-PHPA-ISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccCCCc-------------c-----------c-chhh-hHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999888752110 0 0 0000 012278888888888888888888
Q ss_pred HHHHHhccc
Q psy6461 646 IYAHCSQIC 654 (703)
Q Consensus 646 ~~~~a~~~~ 654 (703)
..++.+...
T Consensus 349 ~~~~~l~~~ 357 (365)
T 4eqf_A 349 ANLGDLDVL 357 (365)
T ss_dssp HHTTCCGGG
T ss_pred HHHhhHHHH
Confidence 888776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=198.48 Aligned_cols=266 Identities=12% Similarity=0.049 Sum_probs=224.8
Q ss_pred cHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH
Q psy6461 353 NVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA 430 (703)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 430 (703)
+...|+..+..+ .|++++|+..|++++... | ....+|..+|.++...|++++|+..|+++++.+|.++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-P-----GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL---- 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----
Confidence 445577777644 399999999999999874 3 3578999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH----------HHHHHhcCChhHH
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY----------ADLEESFGTFKAY 500 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 500 (703)
..|..++.++...|++++|+..|+++++..|+. ...+... +.++..
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~l~~~~~~------- 189 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKY-----------------KYLVKNKKGSPGLTRRMSKSPVD------- 189 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----------------HCC-------------------C-------
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccc-----------------hHHHhhhccchHHHHHHHHHHhh-------
Confidence 899999999999999999999999999998863 2223222 222222
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q psy6461 501 EKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATG 580 (703)
Q Consensus 501 e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 580 (703)
.|++++|+..|+++++..|+...+.+|..+|.++...|++++|+..|+++++
T Consensus 190 ----------------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 190 ----------------------------SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------------hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456999999999999999932267999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC--
Q psy6461 581 AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV-- 658 (703)
Q Consensus 581 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~-- 658 (703)
..|.+ ..+|...+..+...|++++|+..|+++++..|+++. +|..++.++...|++++|+..|++++++.|...
T Consensus 242 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 242 VRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR--SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 99987 457778888888899999999999999999999865 899999999999999999999999999864422
Q ss_pred --------ChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 659 --------TAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 659 --------~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
...+|..+.......|..+.++++.+
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 36899999999999999999988773
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=192.50 Aligned_cols=262 Identities=10% Similarity=0.062 Sum_probs=208.2
Q ss_pred HHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchh-HHHHHHHHHHHHH
Q psy6461 23 EILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPS-YEDVNNTFERSLV 100 (703)
Q Consensus 23 ~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~ 100 (703)
+|..+|.+..+|..++..+. .|++++|...|+++++.+|.+...|...+..+... |+ +++|...|+++++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~--------g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--------QKDLHEEMNYITAIIE 160 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHH
Confidence 46778888999999988888 89999999999999999999999999888877654 75 9999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
.+|+++.+|..++.++...|++++|...|+++|+.+| .+..+|...+.++...|++++|+..|+++++.+|.+.
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~---- 234 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN---- 234 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH----
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----
Confidence 9999999999999999999999999999999999999 5588899999888889999999999999999888874
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 181 EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
.+|..+|.
T Consensus 235 ------------------------------------------------------------------------~a~~~lg~ 242 (382)
T 2h6f_A 235 ------------------------------------------------------------------------SVWNQRYF 242 (382)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 46777777
Q ss_pred HHHH-hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhh
Q psy6461 261 YYIR-SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRL 339 (703)
Q Consensus 261 ~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (703)
++.. .|..++|+ +
T Consensus 243 ~l~~l~~~~~eA~--~---------------------------------------------------------------- 256 (382)
T 2h6f_A 243 VISNTTGYNDRAV--L---------------------------------------------------------------- 256 (382)
T ss_dssp HHHHTTCSCSHHH--H----------------------------------------------------------------
T ss_pred HHHHhcCcchHHH--H----------------------------------------------------------------
Confidence 7766 44435543 0
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC--ChHHHHHHHHH
Q psy6461 340 LLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND--QLEDARLIFDK 417 (703)
Q Consensus 340 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~ 417 (703)
+.++..|++++.. .| ....+|..++.++...| ++++|...+++
T Consensus 257 -----------------------------~~el~~~~~Al~l-~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 257 -----------------------------EREVQYTLEMIKL-VP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp -----------------------------HHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 0112334444443 22 23556777777777666 68889888888
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-hcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAG--------Q-EEAALRLMARA-TATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
+ +..|.++ .++..++.++.+.| + .++|+.+|+++ ++.+|.. ...|..+
T Consensus 302 ~-~~~p~~~----~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-----------------~~~w~~~ 359 (382)
T 2h6f_A 302 L-QPSHSSP----YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR-----------------KEYWRYI 359 (382)
T ss_dssp H-TTTCCCH----HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-----------------HHHHHHH
T ss_pred h-ccCCCCH----HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh-----------------HHHHHHH
Confidence 7 7788887 78888888887763 2 58999999999 9999985 7888888
Q ss_pred HHHHHh
Q psy6461 488 ADLEES 493 (703)
Q Consensus 488 ~~~~~~ 493 (703)
+..+..
T Consensus 360 ~~~l~~ 365 (382)
T 2h6f_A 360 GRSLQS 365 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=191.65 Aligned_cols=281 Identities=14% Similarity=0.103 Sum_probs=191.9
Q ss_pred CC-CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 27 NP-FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 27 ~P-~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
+| .+...|...+.... .|++++|...|+++++.+|.+...|..++...... |++++|...|+++++..|+
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~ 87 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN--------EKDGLAIIALNHARMLDPK 87 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCcC
Confidence 44 35577888888777 89999999999999999999999998888776653 8899999999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH-HHH-H-
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE-DYI-E- 181 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~-~- 181 (703)
++.+|..++.++...|++++|...|++++...|. ....+..+.... |.... .++ .
T Consensus 88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ--YEQLGSVNLQAD--------------------VDIDDLNVQSED 145 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TTTC----------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHhHHH--------------------HHHHHHHHHHHh
Confidence 9999999999999999999999999999998884 345554441110 00000 000 0
Q ss_pred -HHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 182 -YLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 182 -~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
.+...|++++|+..+++++.. .|. ...++..+|.
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~------------------------~~~---------------------~~~~~~~la~ 180 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEM------------------------NPN---------------------DAQLHASLGV 180 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH------------------------STT---------------------CHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhh------------------------CCC---------------------CHHHHHHHHH
Confidence 012223333333333333210 000 0235556666
Q ss_pred HHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhh
Q psy6461 261 YYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLL 340 (703)
Q Consensus 261 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (703)
.+...|++++|...|++++...|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------------------------- 203 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRP--------------------------------------------------------- 203 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT---------------------------------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCC---------------------------------------------------------
Confidence 66666666666666666544322
Q ss_pred hhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6461 341 LLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420 (703)
Q Consensus 341 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 420 (703)
..+.+|..+|.++...|++++|+..|+++++
T Consensus 204 -------------------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 204 -------------------------------------------------DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1244678888899999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 421 VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
..|.++ ..|..++.++...|++++|...|++++...|.......... .......|..++.++...|+.
T Consensus 235 ~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 235 INPGYV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS-----REATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C-----CTHHHHHHHHHHHHHHHTTCH
T ss_pred cCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch-----hhcCHHHHHHHHHHHHhcCCH
Confidence 999887 88999999999999999999999999998887211000000 000256777888777777665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-17 Score=180.67 Aligned_cols=377 Identities=10% Similarity=-0.049 Sum_probs=242.4
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHhC
Q psy6461 61 PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD----QHKITQTRHVFDRALRAL 136 (703)
Q Consensus 61 P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~ 136 (703)
+.++.....++..+..-. ...+++++|...|++++.. +++.++..++.++.. .+++++|...|+++....
T Consensus 36 ~g~~~a~~~lg~~y~~g~----~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGN----ETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCC----CCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 445555555554443210 1125566666666666654 455666666666666 666666666666666532
Q ss_pred CcccccccHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCHHHHH---HHHHh----cCCHHHHHHHHHHhhccccc
Q psy6461 137 PITQHHRVWPLYLSFVKS----HAVPETAVRVFRRYLKLFPEDAEDYI---EYLSS----IERLDEAAVKLAYIVNKESF 205 (703)
Q Consensus 137 p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~----~~~~~~A~~~~~~~~~~~~~ 205 (703)
++..+..++.++.. .+++++|+..|+++.... +..++. .++.. .+++++|+..|+++.+.
T Consensus 110 ----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--- 180 (490)
T 2xm6_A 110 ----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--- 180 (490)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 23445555555555 456666666666665532 333222 22232 45666666666655421
Q ss_pred ccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHH----hCchHHHHHHHHHHHhh
Q psy6461 206 VSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR----SGLFERARDIYEEAIQT 281 (703)
Q Consensus 206 ~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~ 281 (703)
....++..+|.+|.. .+++++|...|+++++.
T Consensus 181 --------------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 181 --------------------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp --------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --------------------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 113578888888888 88999999999998875
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHH
Q psy6461 282 VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRV 361 (703)
Q Consensus 282 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 361 (703)
... . ... ....+. . . .
T Consensus 217 ~~~-~--a~~--~lg~~y--------------------------------~---------------~------------g 232 (490)
T 2xm6_A 217 GDE-L--GQL--HLADMY--------------------------------Y---------------F------------G 232 (490)
T ss_dssp TCH-H--HHH--HHHHHH--------------------------------H---------------H------------T
T ss_pred CCH-H--HHH--HHHHHH--------------------------------H---------------c------------C
Confidence 321 0 000 000000 0 0 0
Q ss_pred hhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHH
Q psy6461 362 RLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV----NDQLEDARLIFDKATLVPYTKVEDLATVWCEWA 437 (703)
Q Consensus 362 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (703)
.-..++.++|+..|+++++. ..+..+..++.++.. .+++++|+..|+++++. .++ ..+..++
T Consensus 233 ~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~----~a~~~Lg 298 (490)
T 2xm6_A 233 IGVTQDYTQSRVLFSQSAEQ--------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS----DGQYYLA 298 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHTT--------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH----HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH----HHHHHHH
Confidence 00026778899999988764 245678888888887 88999999999999875 344 7788888
Q ss_pred HHHHHc-----CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 438 ELELRA-----GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 438 ~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
.++... +++++|...|+++.+..+ ...+..++.++...|..
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-------------------~~a~~~lg~~y~~~g~~--------------- 344 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQGD-------------------ATAQANLGAIYFRLGSE--------------- 344 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHSCCH---------------
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHhCCCc---------------
Confidence 888877 899999999999988753 56677777776654421
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHH
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
.++++|...|+++++. .+ +..+..++.++.. .+++++|...|+++.+..+.
T Consensus 345 -----------------~~~~~A~~~~~~a~~~--~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~---- 399 (490)
T 2xm6_A 345 -----------------EEHKKAVEWFRKAAAK--GE--KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLS---- 399 (490)
T ss_dssp -----------------HHHHHHHHHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH----
T ss_pred -----------------ccHHHHHHHHHHHHHC--CC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCH----
Confidence 1348899999999887 33 5689999999888 78999999999999886542
Q ss_pred HHHHHHHHHHHH----hcCchHHHHHHHHHHHhCCC---cchHHHHHHHHHHHH
Q psy6461 589 EMFNIYIKKAAE----IYGIPKTRQIYERAIESLPE---EPTRQMCLKFAEMET 635 (703)
Q Consensus 589 ~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~a~~~~ 635 (703)
..+.....++.. .+++++|...|+++++..|+ ++. .+..++.++.
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~--a~~~l~~~~~ 451 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTEN--RNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHH--HHHHHTTSCH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHH--HHHHHHhcCH
Confidence 244444555554 57889999999999998854 333 4444444433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-17 Score=174.40 Aligned_cols=384 Identities=11% Similarity=-0.029 Sum_probs=285.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh----cCChHHHHH
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMD----QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS----HAVPETAVR 163 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~ 163 (703)
...++++. .++++..+..++.++.. .+++++|...|+++++.. ++..+..++.++.. .+++++|+.
T Consensus 27 ~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44555443 46789999999999998 899999999999999853 35778888888888 889999999
Q ss_pred HHHHHHhhCCCCHHHH---HHHHHh----cCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccH
Q psy6461 164 VFRRYLKLFPEDAEDY---IEYLSS----IERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNV 236 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~---~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 236 (703)
.|+++.... +..++ ..++.. .+++++|+..|+++.+.
T Consensus 101 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------------------- 144 (490)
T 2xm6_A 101 WYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---------------------------------- 144 (490)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------------------------------
Confidence 999998753 44433 234445 67899999999877521
Q ss_pred HHHHHhHhhhhccchhhHHHHHHHHHHH----hCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 237 DAIIRGGLRRYTDQLGHLWNSLADYYIR----SGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
..+.++..+|.+|.. .+++++|...|+++++... . ..+.....+.
T Consensus 145 -------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~--~---~a~~~Lg~~y------------- 193 (490)
T 2xm6_A 145 -------------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGN--V---WSCNQLGYMY------------- 193 (490)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--H---HHHHHHHHHH-------------
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--H---HHHHHHHHHH-------------
Confidence 113678899999988 7899999999999887521 1 1110000000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchh
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLH 392 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 392 (703)
.. ..-..++.++|+..|+++++. ..+
T Consensus 194 -------------------~~---------------------------g~g~~~~~~~A~~~~~~a~~~--------~~~ 219 (490)
T 2xm6_A 194 -------------------SR---------------------------GLGVERNDAISAQWYRKSATS--------GDE 219 (490)
T ss_dssp -------------------HH---------------------------TSSSCCCHHHHHHHHHHHHHT--------TCH
T ss_pred -------------------hc---------------------------CCCCCcCHHHHHHHHHHHHHC--------CCH
Confidence 00 000027788999999999875 245
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCc
Q psy6461 393 TLWIEFGKFYEV----NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 393 ~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
..+..++.++.. .+++++|+..|++++... ++ ..+..++.++.. .+++++|...|+++.+...
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--- 290 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NS----IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--- 290 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CH----HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC---
Confidence 678899999986 789999999999998863 33 778889998888 8999999999999987642
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
+..+..++.++.....- ..+++++|...|+++++
T Consensus 291 ----------------~~a~~~Lg~~y~~~~~g------------------------------~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 291 ----------------SDGQYYLAHLYDKGAEG------------------------------VAKNREQAISWYTKSAE 324 (490)
T ss_dssp ----------------HHHHHHHHHHHHHCBTT------------------------------BCCCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHcCCCC------------------------------CcCCHHHHHHHHHHHHh
Confidence 56667777766654000 02456999999999998
Q ss_pred hCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHh
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHG---LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAIES 617 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 617 (703)
..+ +..+..++.++...| ++++|+..|+++++... ...+..+..++.. .+++++|...|+++++.
T Consensus 325 ~~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 325 QGD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE----KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp TTC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cCC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 743 458999999988867 88999999999998743 2344555555555 68999999999999986
Q ss_pred CCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCC-CCChHhHHHHHHH
Q psy6461 618 LPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQICDP-RVTAGFWAAWKSF 669 (703)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 669 (703)
. + ...+..++.++.. .|++++|+.+|++|++..+. ..++..+.++..+
T Consensus 397 ~--~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 397 G--L--SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp T--C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred C--C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 4 2 3388899999998 89999999999999998532 1134444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=187.69 Aligned_cols=256 Identities=9% Similarity=0.058 Sum_probs=216.2
Q ss_pred hhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHhhccC
Q psy6461 346 LLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ-LEDARLIFDKATLVP 422 (703)
Q Consensus 346 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~ 422 (703)
.+..+|.+..+|..++.++. |++++|+..|++++... | ....+|..+|.++...|+ +++|+..|+++++++
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 36778888999988887654 89999999999999873 3 467899999999999996 999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHh
Q psy6461 423 YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502 (703)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 502 (703)
|++. .+|..++.++...|++++|+..|++++..+|++ ...|...+.++...|++
T Consensus 163 P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-----------------~~a~~~lg~~~~~~g~~----- 216 (382)
T 2h6f_A 163 PKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----------------YHAWQHRQWVIQEFKLW----- 216 (382)
T ss_dssp TTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCC-----
T ss_pred CCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-----------------HHHHHHHHHHHHHcCCh-----
Confidence 9997 999999999999999999999999999999985 88999998888887765
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-cCChHHH-----HHHHH
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE-HGLARHA-----MAVYE 576 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~g~~~~A-----~~~~~ 576 (703)
++|+..|+++++.+|++ ..+|..++.++.. .|..++| +..|+
T Consensus 217 ------------------------------~eAl~~~~~al~l~P~~--~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 217 ------------------------------DNELQYVDQLLKEDVRN--NSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp ------------------------------TTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 89999999999999999 6799999999999 5655888 58999
Q ss_pred HHhhccCcchHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC--------C-HHHHHH
Q psy6461 577 RATGAVLPEEMFEMFNIYIKKAAEIY--GIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLG--------E-IDRARA 645 (703)
Q Consensus 577 ~al~~~p~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g--------~-~~~A~~ 645 (703)
+++...|++... |......+...| ++++|...++++ +..|+++. ++..++.++.+.| + +++|+.
T Consensus 265 ~Al~l~P~~~~a--~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~--al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 265 EMIKLVPHNESA--WNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY--LIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHSTTCHHH--HHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH--HHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHCCCCHHH--HHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH--HHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 999999998554 444444444444 689999999888 88898766 7888999988875 3 589999
Q ss_pred HHHHH-hcccCCCCChHhHHHHHHHHHH
Q psy6461 646 IYAHC-SQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 646 ~~~~a-~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+|+++ +++ +|. ....|..+......
T Consensus 340 ~~~~l~~~~-DP~-r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 340 LCEILAKEK-DTI-RKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHTT-CGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-Cch-hHHHHHHHHHHHHH
Confidence 99999 788 454 57888887776543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=172.21 Aligned_cols=211 Identities=15% Similarity=0.073 Sum_probs=168.3
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.++.+|..+|..+...|++++|+..|+++++.+|.++ ..|..++.++.+.|++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------ 72 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRY------ 72 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Confidence 3567899999999999999999999999999999998 999999999999999999999999999999985
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...|..++.++...+.. ... . +. ..|++++|...|+++++.+|++
T Consensus 73 -----------~~a~~~lg~~~~~~~~~------------~~~--~---~~-------~~g~~~~A~~~~~~al~~~P~~ 117 (217)
T 2pl2_A 73 -----------LGGYMVLSEAYVALYRQ------------AED--R---ER-------GKGYLEQALSVLKDAERVNPRY 117 (217)
T ss_dssp -----------HHHHHHHHHHHHHHHHT------------CSS--H---HH-------HHHHHHHHHHHHHHHHHHCTTC
T ss_pred -----------HHHHHHHHHHHHHhhhh------------hhh--h---cc-------cccCHHHHHHHHHHHHHhCccc
Confidence 78888888887765110 000 0 00 0133599999999999999998
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
+.+|..+|.++...|++++|+..|+++++.. ++ ..++......+...|++++|+..|+++++..|+++. ++..
T Consensus 118 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~ 190 (217)
T 2pl2_A 118 --APLHLQRGLVYALLGERDKAEASLKQALALE-DT--PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD--LRVR 190 (217)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHH
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHH
Confidence 6799999999999999999999999999998 55 456777788888899999999999999999999876 8999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
++.++...|++++|+..|+++-.
T Consensus 191 la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 191 YASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHTC----------------
T ss_pred HHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=182.37 Aligned_cols=281 Identities=13% Similarity=0.068 Sum_probs=223.8
Q ss_pred cHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHH
Q psy6461 353 NVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLA 430 (703)
Q Consensus 353 ~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 430 (703)
+...|+..+..+ .|++++|+..|++++... | ....+|..+|.++...|++++|...|+++++..|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-P-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---- 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH----
Confidence 445556655533 499999999999999873 3 3577899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWP 510 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~ 510 (703)
..+..++.++...|++++|...+++++...|... ..+..+.........
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~-------------- 138 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE-----------------QLGSVNLQADVDIDD-------------- 138 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT-----------------TC---------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-----------------HHHHHHhHHHHHHHH--------------
Confidence 8999999999999999999999999999998852 222222110000000
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHH
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEM 590 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 590 (703)
..+. ... ......+++++|...++++++..|.+ ..++..++.++...|++++|...+++++...|.+ ...
T Consensus 139 ---~~~~--~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~ 208 (327)
T 3cv0_A 139 ---LNVQ--SED-FFFAAPNEYRECRTLLHAALEMNPND--AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--AQL 208 (327)
T ss_dssp -------------CCTTSHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH
T ss_pred ---HHHH--HHh-HHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--HHH
Confidence 0000 000 00011245699999999999999998 6799999999999999999999999999999987 456
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----------Ch
Q psy6461 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----------TA 660 (703)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~ 660 (703)
+...+..+...|++++|...|+++++..|+++. .|..++.++...|++++|...|+++++..|... ..
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVR--VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 777777788899999999999999999998766 899999999999999999999999999855410 37
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 661 GFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
..|..++......|+.+.|..+++.+
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 78999999999999999999887543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-18 Score=160.44 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=167.4
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHh
Q psy6461 423 YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502 (703)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 502 (703)
|.++ ..++.++..+.+.|++++|+..|+++++.+|++ +..|..++.++...|++
T Consensus 2 p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~g~~----- 55 (217)
T 2pl2_A 2 QTAE----QNPLRLGVQLYALGRYDAALTLFERALKENPQD-----------------PEALYWLARTQLKLGLV----- 55 (217)
T ss_dssp --CC----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----------------HHHHHHHHHHHHHTTCH-----
T ss_pred CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH-----
Confidence 5565 889999999999999999999999999999995 88999999888887765
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-----------CChHHH
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH-----------GLARHA 571 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-----------g~~~~A 571 (703)
++|...|+++++.+|++ +..|..+|.++... |++++|
T Consensus 56 ------------------------------~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 56 ------------------------------NPALENGKTLVARTPRY--LGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp ------------------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 99999999999999998 67999999999999 999999
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 572 MAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 572 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
+..|+++++..|++ ...|......+...|++++|+..|+++++.. +++. ++..++.++...|++++|+..|++++
T Consensus 104 ~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 104 LSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPE--IRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH--HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999988 4567777777888999999999999999999 6655 89999999999999999999999999
Q ss_pred cccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6461 652 QICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKR 687 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 687 (703)
+.. |+ ++.++..++......|+.++|.+.++...
T Consensus 179 ~~~-P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 179 EQA-PK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHS-TT-CHHHHHHHHHHHTC---------------
T ss_pred HhC-CC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 994 44 58899999999999999999988875543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=165.48 Aligned_cols=243 Identities=9% Similarity=0.009 Sum_probs=187.2
Q ss_pred cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC
Q psy6461 365 DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 365 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
.|++++|+..|++++... | ....+|..+|.++...|++++|+..|++++.. |.++......|..++.++...|
T Consensus 16 ~~~~~~A~~~~~~~l~~~-p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK-Y-----NSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT-C-----CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhC-C-----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcc
Confidence 388999999999998863 3 23457888899999999999999999999984 4444333466889999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
++++|+..|++++...|.+ ..+|..++.++...|++
T Consensus 89 ~~~~A~~~~~~a~~~~~~~-----------------~~~~~~l~~~~~~~~~~--------------------------- 124 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTR-----------------LDMYGQIGSYFYNKGNF--------------------------- 124 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTC-----------------THHHHHHHHHHHHTTCH---------------------------
T ss_pred cHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHccCH---------------------------
Confidence 9999999999999998875 67888888887777665
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC-
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG- 603 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~- 603 (703)
++|...|+++++..|.+ +.+|..+|......+++++|...|+++++..|.+... +..........++
T Consensus 125 --------~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 125 --------PLAIQYMEKQIRPTTTD--PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG--YLWRARANAAQDPD 192 (272)
T ss_dssp --------HHHHHHHGGGCCSSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHHSTT
T ss_pred --------HHHHHHHHHHhhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcCcc
Confidence 89999999999999988 6788888844445669999999999999999987443 3334444444566
Q ss_pred --chHHHHHHHHHHHhC---CCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 604 --IPKTRQIYERAIESL---PEEP---TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 604 --~~~A~~~~~~al~~~---p~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
+++|...|+++++.. |+.. ...++..++.++...|++++|+..|++++++. |+ ++..+.....+...
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~-~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PT-NKKAIDGLKMKLEH 267 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-CHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cc-HHHHHHHhhhhhcc
Confidence 888999999999886 4421 23478888999999999999999999999985 44 57677666555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-18 Score=163.15 Aligned_cols=220 Identities=14% Similarity=0.040 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..|+.+|..+...|++++|+..|+++++..|.++ .++..++.++...|++++|+..|++++...|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINFANLLSSVNELERALAFYDKALELDSSA------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-------
Confidence 355788889999999999999999999999999887 889999999999999999999999999999874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
..++..++.++...|++ ++|...|+++++..|.+
T Consensus 91 ----------~~~~~~la~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~- 124 (243)
T 2q7f_A 91 ----------ATAYYGAGNVYVVKEMY-----------------------------------KEAKDMFEKALRAGMEN- 124 (243)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHTCCS-
T ss_pred ----------hHHHHHHHHHHHHhccH-----------------------------------HHHHHHHHHHHHhCCCC-
Confidence 77888888887776665 99999999999999988
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
..++..++.++...|++++|...++++++..|.+ ..++...+..+...|++++|...|+++++..|+++. ++..+
T Consensus 125 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l 199 (243)
T 2q7f_A 125 -GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD--AFYNA 199 (243)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH--HHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--HHHHH
Confidence 6789999999999999999999999999999987 456677777778889999999999999999998765 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcC
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHG 674 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g 674 (703)
+.++...|++++|...|+++++.. |+ +...+..+..+....|
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQ-PD-HMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHC-TT-CHHHHHHHTC------
T ss_pred HHHHHHccCHHHHHHHHHHHHccC-cc-hHHHHHHHHHHHhhcc
Confidence 999999999999999999999985 44 4777777666655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=161.12 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=188.2
Q ss_pred HHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH---
Q psy6461 355 LEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL--- 429 (703)
Q Consensus 355 ~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--- 429 (703)
..|...+..+ .|++++|+..|++++... . .+.+|..+|.++...|++++|+..|++++...|.+....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 3444444432 388999999999998874 2 366889999999999999999999999998876552111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
..+|..++.++...|++++|...|++++...|. ..++.. .
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------~~~~~~-------~--------------- 118 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------------ADILTK-------L--------------- 118 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------------HHHHHH-------H---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------------hHHHHH-------H---------------
Confidence 378899999999999999999999999998876 222222 1
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHH
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFE 589 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 589 (703)
+++++|...+++++...|.+ ..+|..+|.++...|++++|+..|+++++..|.+ ..
T Consensus 119 --------------------~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~ 174 (258)
T 3uq3_A 119 --------------------RNAEKELKKAEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--AR 174 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred --------------------hHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc--HH
Confidence 22489999999999999987 6799999999999999999999999999999987 45
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
++...+..+...|++++|...|+++++..|+++. .|..++.++...|++++|...|++++++.
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR--AYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6677777778889999999999999999999765 89999999999999999999999999985
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-17 Score=161.83 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=199.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+++++.+|..+...|++++|+..|+++++.+|.++ .+|..++.++...|++++|+..+++++.. |.+...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----- 72 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA----- 72 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH-----
Confidence 34678899999999999999999999999999987 78999999999999999999999999994 332111
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
....|..++.++...|++ ++|...|+++++..|.+
T Consensus 73 --------~~~~~~~lg~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~~~~-- 107 (272)
T 3u4t_A 73 --------KSADFEYYGKILMKKGQD-----------------------------------SLAIQQYQAAVDRDTTR-- 107 (272)
T ss_dssp --------CHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC--
T ss_pred --------HHHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHhcCccc--
Confidence 145577777777776665 99999999999999998
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
+.+|..+|.++...|++++|+..|+++++..|.+. ..|..........+++++|...|+++++..|+++. .+..++
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~~~ 183 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP--KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI--GYLWRA 183 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchH--HHHHHH
Confidence 57999999999999999999999999999999884 34444442333456999999999999999999865 788889
Q ss_pred HHHHHcCC---HHHHHHHHHHHhcccCCCCC------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy6461 632 EMETKLGE---IDRARAIYAHCSQICDPRVT------AGFWAAWKSFEITHGNEDTMREMLRIKRSV 689 (703)
Q Consensus 632 ~~~~~~g~---~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 689 (703)
.++...|+ +++|...|+++++....... ...+..++.+....|+.++|.+.++.+-.+
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99989998 88999999999987522211 267888999999999999999999665544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=158.37 Aligned_cols=208 Identities=15% Similarity=0.156 Sum_probs=165.6
Q ss_pred CCchhHHHHHHHHHHhc-CCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC
Q psy6461 366 GKPLDIIRTYTEAVKTV-DPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG 444 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (703)
++.++|++.+++.+..- .| ..+.+++.+|.++...|++++|+..|++ |.++ .++..++.++.+.|
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P-----~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~----~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDV-----TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL----ECMAMTVQILLKLD 144 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCC-----SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH----HHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH----HHHHHHHHHHHHCC
Confidence 67789999999988651 23 4577899999999999999999999998 6666 88999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 445 QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 445 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
++++|...|+++++..|++. ...+...++.+...
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~---------------~~~l~~a~~~l~~~------------------------------- 178 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDAT---------------LTQLATAWVSLAAG------------------------------- 178 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHC-------------------------------
T ss_pred CHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhC-------------------------------
Confidence 99999999999999988741 01111222222222
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCc
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 604 (703)
.+++++|..+|+++++..|++ +.+|..+|.++...|++++|...|++++...|++. ..+..++......|+.
T Consensus 179 ----~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~--~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 179 ----GEKLQDAYYIFQEMADKCSPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP--ETLINLVVLSQHLGKP 250 (291)
T ss_dssp ----TTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCC
T ss_pred ----chHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCC
Confidence 345699999999999999998 67999999999999999999999999999999984 4566677777778888
Q ss_pred hH-HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6461 605 PK-TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIY 647 (703)
Q Consensus 605 ~~-A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 647 (703)
++ +..+++++++..|+++.+ .++..+.+.|++|..-|
T Consensus 251 ~eaa~~~~~~~~~~~P~~~~~------~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 251 PEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHHHHHHHc
Confidence 75 678999999999998762 23445666677766555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-17 Score=160.23 Aligned_cols=254 Identities=9% Similarity=0.048 Sum_probs=172.6
Q ss_pred hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc
Q psy6461 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA 443 (703)
Q Consensus 364 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 443 (703)
+.|++..|+..+++.... .|. ........+++.|...|+++.|+..++.. .|.. ...+..++.++...
T Consensus 11 ~~g~y~~ai~~~~~~~~~-~p~----~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~----~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS-SPE----RDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE----LQAVRMFAEYLASH 78 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC-SHH----HHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH----HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcccC-Cch----hhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh----HHHHHHHHHHHcCC
Confidence 347778787777654322 121 12345566677888888888888766542 2222 25667777777778
Q ss_pred CCHHHHHHHHHHHhcC--CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHH
Q psy6461 444 GQEEAALRLMARATAT--PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLT 521 (703)
Q Consensus 444 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~ 521 (703)
++.++|++.+++.+.. +|++ +.++...+.++...|++ ++|++.+..+.+..++...+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~-----------------~~~~~~la~~~~~~g~~---~~Al~~l~~~~~~~~~~~l~~ 138 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTN-----------------TTFLLMAASIYFYDQNP---DAALRTLHQGDSLECMAMTVQ 138 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSC-----------------HHHHHHHHHHHHHTTCH---HHHHHHHTTCCSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCC-----------------HHHHHHHHHHHHHCCCH---HHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888887754 4764 67777878888877776 566655544555555554443
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Q psy6461 522 KFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI 601 (703)
Q Consensus 522 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 601 (703)
.+.. .|++++|.+.|+++++.+|++....+...+..+....|++++|..+|+++++..|++ ..++...+..+.+.
T Consensus 139 ~~~~---~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 139 ILLK---LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT--LLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHT
T ss_pred HHHH---CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHc
Confidence 2222 466788888888888888876211122234444555678888888888888888876 45666677777778
Q ss_pred cCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcccCC
Q psy6461 602 YGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDR-ARAIYAHCSQICDP 656 (703)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~-A~~~~~~a~~~~~~ 656 (703)
|++++|...|+++++..|+++. ++..++.++...|+.++ +...++++++..|.
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~--~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPE--TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888766 78888888888888765 56788888887443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-17 Score=150.38 Aligned_cols=172 Identities=9% Similarity=0.105 Sum_probs=137.6
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.++.+|+.+|..+...|++++|+..|+++++.+|+++ .+|..++.++.+.|++++|...+.+++...|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~------ 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS------ 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh------
Confidence 3567888889999999999999999999999888887 888888888888999999999999888888874
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...+...+.+....++. +.|...+.++++..|++
T Consensus 73 -----------~~~~~~~~~~~~~~~~~-----------------------------------~~a~~~~~~a~~~~~~~ 106 (184)
T 3vtx_A 73 -----------AEAYYILGSANFMIDEK-----------------------------------QAAIDALQRAIALNTVY 106 (184)
T ss_dssp -----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC
T ss_pred -----------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCccc
Confidence 67777777666665554 88888888888888888
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
..++..+|.++...|++++|+..|+++++..|.+ ...|...+..+...|++++|...|+++++.+|++
T Consensus 107 --~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 107 --ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred --hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 5688888888888888888888888888888876 3455555666666777777777777777777754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-16 Score=154.29 Aligned_cols=235 Identities=15% Similarity=0.072 Sum_probs=199.0
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....|..+|..+...|++++|+..|+++++.. .++ .+|..++.++...|++++|...+++++...|+.....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--- 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY--- 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch---
Confidence 45678999999999999999999999999998 666 8999999999999999999999999999877531000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
.....+|...+.++...|++ ++|...|+++++..|..
T Consensus 76 -------~~~~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~~~~- 112 (258)
T 3uq3_A 76 -------KVISKSFARIGNAYHKLGDL-----------------------------------KKTIEYYQKSLTEHRTA- 112 (258)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCCCH-
T ss_pred -------HHHHHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHhcCchh-
Confidence 00146677777777766654 99999999999999873
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
. ++...|++++|...+++++...|.+ ..++...+..+...|++++|...|+++++..|+++. ++..+
T Consensus 113 --~-------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l 179 (258)
T 3uq3_A 113 --D-------ILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR--GYSNR 179 (258)
T ss_dssp --H-------HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHH
T ss_pred --H-------HHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH--HHHHH
Confidence 2 3445578899999999999998876 456777777788899999999999999999999765 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQA 691 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 691 (703)
+.++...|++++|...++++++..| + ....|..++......|+.++|.+.++.+-.+..
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKDP-N-FVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCH-H-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999854 4 588999999999999999999999977766653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=153.64 Aligned_cols=202 Identities=12% Similarity=0.067 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+.+|..+|..+...|++++|+..|+++++..|.++ .+|..++.++...|++++|...|++++...|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYRKALASDSRN-------- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--------
Confidence 56777777777777888888888888777777665 777777777777788888888888877777763
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hCCCc
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE--ACPPR 549 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~ 549 (703)
..+|..++.++...|++ ++|+..|+++++ ..|.+
T Consensus 105 ---------~~~~~~la~~~~~~g~~-----------------------------------~~A~~~~~~~~~~~~~~~~ 140 (252)
T 2ho1_A 105 ---------ARVLNNYGGFLYEQKRY-----------------------------------EEAYQRLLEASQDTLYPER 140 (252)
T ss_dssp ---------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHTTCTTCTTH
T ss_pred ---------HHHHHHHHHHHHHHhHH-----------------------------------HHHHHHHHHHHhCccCccc
Confidence 56666666666665554 777777777777 55655
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLK 629 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (703)
..++..++.++...|++++|...|++++...|.+ ...+..++..+...|++++|...++++++..|+++. .+..
T Consensus 141 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 214 (252)
T 2ho1_A 141 --SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR--SLLL 214 (252)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH--HHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHH
Confidence 4577777777777788888888888887777765 345556666666677788888888888877776654 6777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
++.++...|++++|...++++++..|
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 77777778888888888888877743
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=147.98 Aligned_cols=204 Identities=12% Similarity=0.037 Sum_probs=152.2
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+.+|..+|..+...|++++|+..|+++++..|.++ .+|..++.++...|++++|...+++++...|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------ 75 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------ 75 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------
Confidence 4566777888888888888888888888888777776 777888888888888888888888888877764
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhc-CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hC
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE--AC 546 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~--~~ 546 (703)
...+..++.++... |++ ++|...|+++++ ..
T Consensus 76 -----------~~~~~~l~~~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 76 -----------AEINNNYGWFLCGRLNRP-----------------------------------AESMAYFDKALADPTY 109 (225)
T ss_dssp -----------HHHHHHHHHHHHTTTCCH-----------------------------------HHHHHHHHHHHTSTTC
T ss_pred -----------hHHHHHHHHHHHHhcCcH-----------------------------------HHHHHHHHHHHcCcCC
Confidence 56677776666665 554 778888888887 44
Q ss_pred CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CcchHH
Q psy6461 547 PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP-EEPTRQ 625 (703)
Q Consensus 547 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 625 (703)
|.+ ..+|..++.++...|++++|+..|+++++..|.+ ...+...+..+...|++++|..+++++++..| +++.
T Consensus 110 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 183 (225)
T 2vq2_A 110 PTP--YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD-- 183 (225)
T ss_dssp SCH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH--
T ss_pred cch--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--
Confidence 444 4577788888888888888888888888877776 34555666666677788888888888888877 6554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
.+...+.++...|+.+.|..+++.+.+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 184 DLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 566667777778888888888877776643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=146.33 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=145.8
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHH
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPR 107 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 107 (703)
.+...|..++..+. .|++++|+..|+++++.+|+++..|..++..+... |++++|...+++++...|+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI--------GLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCchhHH
Confidence 46778888888888 89999999999999999999999998888887654 7889999999999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcC
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIE 187 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 187 (703)
+|...+.++...++++.|...+.+++...| .+..+|..++.++...|++++|+..|+++++.+|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~----------- 141 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI----------- 141 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh-----------
Confidence 999999999999999999999999999988 4578888888888889999999999999988888774
Q ss_pred CHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCc
Q psy6461 188 RLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGL 267 (703)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (703)
.+|..+|.+|...|+
T Consensus 142 -----------------------------------------------------------------~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 142 -----------------------------------------------------------------RAYQSIGLAYEGKGL 156 (184)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------------------hHHHHHHHHHHHCCC
Confidence 467778888888888
Q ss_pred hHHHHHHHHHHHhhcCC
Q psy6461 268 FERARDIYEEAIQTVTT 284 (703)
Q Consensus 268 ~~~A~~~~~~~l~~~~~ 284 (703)
+++|+..|+++++..|+
T Consensus 157 ~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 88888888888887664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=170.16 Aligned_cols=316 Identities=10% Similarity=-0.006 Sum_probs=230.4
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (703)
...+...|..+...|++++|...|++++...|..... ..++...+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~---------------------------------- 54 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLG---------------------------------- 54 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH----------------------------------
Confidence 3578889999999999999999999999987653211 11111110
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH
Q psy6461 331 LEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
.+....|++++|+..|++++.........+....++..+|.++...|++++
T Consensus 55 -----------------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 55 -----------------------------NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp -----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------------HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 011112888999999999887632222223457789999999999999999
Q ss_pred HHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhcCCCCCccccc
Q psy6461 411 ARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQ--------------------EEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 411 A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
|...|++++...+.. ......++..++.++...|+ +++|...+.+++...+.....
T Consensus 106 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~-- 183 (406)
T 3sf4_A 106 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR-- 183 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc--
Confidence 999999999885532 12234689999999999999 999999999887653221000
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
......+..++.++...|+ +++|...|+++++..|.
T Consensus 184 ---------~~~~~~~~~la~~~~~~g~-----------------------------------~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 184 ---------AAQGRAFGNLGNTHYLLGN-----------------------------------FRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTB-----------------------------------HHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHccC-----------------------------------HHHHHHHHHHHHHHHHh
Confidence 0023455666666665555 48999999999987654
Q ss_pred cc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 549 RY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 549 ~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
.. ...++..+|.++...|++++|...+++++...|... ....+......+...|++++|...|+++++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 31 124889999999999999999999999998766431 2345666677777889999999999999988553
Q ss_pred cc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----CChHhHHHHHHHHHHcCCH
Q psy6461 621 EP----TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR----VTAGFWAAWKSFEITHGNE 676 (703)
Q Consensus 621 ~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~g~~ 676 (703)
.. ...++..++.++...|++++|...|++++++.+.. .....+..++.+....|..
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 32 13478889999999999999999999999874322 1356677788888777754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=152.61 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=173.7
Q ss_pred HHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHH
Q psy6461 354 VLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431 (703)
Q Consensus 354 ~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 431 (703)
...|...+..+ .|++++|+..|++++... | ....++..+|.++...|++++|+..|+++++..|.+. .
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 92 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-K-----EDAIPYINFANLLSSVNELERALAFYDKALELDSSAA----T 92 (243)
T ss_dssp -------------------CCTTHHHHHTTC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-c-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----H
Confidence 34444444432 389999999999999863 3 3577899999999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCc
Q psy6461 432 VWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPY 511 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~ 511 (703)
++..++.++...|++++|...++++++..|.+ ..+|..++.++...|++
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~~~~-------------- 141 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-----------------GDLFYMLGTVLVKLEQP-------------- 141 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-----------------HHHHHHHHHHHHHTSCH--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccH--------------
Confidence 99999999999999999999999999999984 77888888888777665
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHH
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
++|...++++++..|++ ..++..++.++...|++++|+..|++++...|.+ ...+
T Consensus 142 ---------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 196 (243)
T 2q7f_A 142 ---------------------KLALPYLQRAVELNEND--TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH--ADAF 196 (243)
T ss_dssp ---------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC--HHHH
T ss_pred ---------------------HHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHH
Confidence 99999999999999998 6799999999999999999999999999999987 4567
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL 637 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (703)
...+..+...|++++|...|+++++..|+++. ++..++.+....
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~l~~~~ 240 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHML--ALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH--HHHHHTC-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCcchHH--HHHHHHHHHhhc
Confidence 77777888899999999999999999999876 666665554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=148.38 Aligned_cols=210 Identities=10% Similarity=0.022 Sum_probs=182.6
Q ss_pred hcCCCc-HHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 348 RQNPHN-VLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 348 ~~~p~~-~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
..+|.+ +..|..++..+ .|++++|+..|++++... | ....+|..+|.++...|++++|+..|+++++..|.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-P-----SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-C-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 445665 77777777654 499999999999999873 3 35778999999999999999999999999999998
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEK 502 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 502 (703)
+. .+|..++.++...|++++|+..|++++. ..|. ...++..++.++...|++
T Consensus 104 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~----- 157 (252)
T 2ho1_A 104 NA----RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE-----------------RSRVFENLGLVSLQMKKP----- 157 (252)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT-----------------HHHHHHHHHHHHHHTTCH-----
T ss_pred cH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc-----------------cHHHHHHHHHHHHHcCCH-----
Confidence 87 8999999999999999999999999999 6665 367788888777776665
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 503 GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 503 al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
++|...|+++++..|.+ ..++..++.++...|++++|...++++++..
T Consensus 158 ------------------------------~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 158 ------------------------------AQAKEYFEKSLRLNRNQ--PSVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp ------------------------------HHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred ------------------------------HHHHHHHHHHHhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998 6799999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 583 LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 583 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
|.+ ...+......+...|++++|+..++++++..|+++.
T Consensus 206 ~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 206 GQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 977 445666777777889999999999999999999875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=159.55 Aligned_cols=124 Identities=16% Similarity=0.123 Sum_probs=108.2
Q ss_pred cCchhHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy6461 43 NAPKAIINTIYERSLKEL----PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD 118 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~----P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 118 (703)
++++++|...|+++++.. |.+...|..++...... |++++|...|+++++..|+++.+|..++.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 688999999999999874 46677888877776654 889999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 119 QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 119 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.|++++|...|+++++..| ....+|..++.++...|++++|+..|+++++.+|.+.
T Consensus 90 ~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccCHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999998 4578888889998899999999999999999888875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-14 Score=157.76 Aligned_cols=332 Identities=12% Similarity=0.137 Sum_probs=222.5
Q ss_pred hhHHHHhcCCCChHHHHHH---------HHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhH
Q psy6461 19 PYEEEILRNPFSVKHWLRY---------IEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSY 88 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~---------~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~ 88 (703)
....+|+.++..+...... +..+. .|.+++|..+|+++- ........+++ . .+++
T Consensus 1028 Li~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie----~-------i~nl 1092 (1630)
T 1xi4_A 1028 LILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE----H-------IGNL 1092 (1630)
T ss_pred HHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH----H-------HhhH
Confidence 3444555566555544444 66666 899999999999983 12222222221 1 2678
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
++|.++++++ +++.+|..+|..+...|++++|...|.+| .++..|...+.++.+.|++++|++.|..+
T Consensus 1093 drAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888865 67999999999999999999999999986 23466888999999999999999999999
Q ss_pred HhhCCCCH-H-HHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhh
Q psy6461 169 LKLFPEDA-E-DYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRR 246 (703)
Q Consensus 169 l~~~p~~~-~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (703)
.+..|++. . ..+-.+.+.+++++. ..| ++ .
T Consensus 1161 rk~~~e~~Idt~LafaYAKl~rleel-e~f---I~-------------------------~------------------- 1192 (1630)
T 1xi4_A 1161 RKKARESYVETELIFALAKTNRLAEL-EEF---IN-------------------------G------------------- 1192 (1630)
T ss_pred HhhcccccccHHHHHHHHhhcCHHHH-HHH---Hh-------------------------C-------------------
Confidence 98876642 2 233335566777742 222 11 0
Q ss_pred hccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHH
Q psy6461 247 YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELEL 326 (703)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (703)
.....|..+|+.+...|++++|...|.++- ++..+-..+..+.+ .+.
T Consensus 1193 ---~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-------ny~rLA~tLvkLge-----------------------~q~ 1239 (1630)
T 1xi4_A 1193 ---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------NFGRLASTLVHLGE-----------------------YQA 1239 (1630)
T ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------HHHHHHHHHHHhCC-----------------------HHH
Confidence 012356678888888888888888888852 22222222211100 111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH
Q psy6461 327 RLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV 404 (703)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 404 (703)
+...+.+ ..+..+|....... .|++..|..+... +.. .++....++.+|..
T Consensus 1240 AIEaarK-----------------A~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---------~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1240 AVDGARK-----------------ANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---------HADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHH-----------------hCCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---------CHHHHHHHHHHHHH
Confidence 1222222 24557776655432 3667777776653 221 24456688899999
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR--AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
.|.+++|+.+++.++.+++.++ .+|..++.++.+ -++.-++.+.|...+.++|-- ... ....
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~----gmftELaiLyaKy~peklmEhlk~f~~rini~k~~--------r~~----e~~~ 1356 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHM----GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL--------RAA----EQAH 1356 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHh----HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh--------HHH----HHHH
Confidence 9999999999999999998887 788777777765 456778888888888776610 000 1378
Q ss_pred HHHHHHHHHHhcCChhHHHhHh
Q psy6461 483 LWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al 504 (703)
+|..++-++...|++ ++|+
T Consensus 1357 lW~elv~LY~~~~e~---dnA~ 1375 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEY---DNAI 1375 (1630)
T ss_pred HHHHHHHHHHhcccH---HHHH
Confidence 899988888888876 5555
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=143.79 Aligned_cols=209 Identities=12% Similarity=0.061 Sum_probs=180.5
Q ss_pred cCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc
Q psy6461 349 QNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV 426 (703)
Q Consensus 349 ~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 426 (703)
.+|.++..|..++..+ .|++++|+..|++++... | ....+|..+|.++...|++++|+..|++++...|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-P-----KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-c-----cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4677788888877654 499999999999999874 3 3477899999999999999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhH
Q psy6461 427 EDLATVWCEWAELELRA-GQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKG 503 (703)
Q Consensus 427 ~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 503 (703)
.++..++.++... |++++|...+++++. ..|. ...+|..++.++...|++
T Consensus 77 ----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~------ 129 (225)
T 2vq2_A 77 ----EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT-----------------PYIANLNKGICSAKQGQF------ 129 (225)
T ss_dssp ----HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC-----------------HHHHHHHHHHHHHHTTCH------
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc-----------------hHHHHHHHHHHHHHcCCH------
Confidence 8899999999999 999999999999999 4444 367788888877776665
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC
Q psy6461 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 504 l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 583 (703)
++|...|+++++..|.+ ..++..++.++...|++++|...+++++...|
T Consensus 130 -----------------------------~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 130 -----------------------------GLAEAYLKRSLAAQPQF--PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp -----------------------------HHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred -----------------------------HHHHHHHHHHHHhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999998 67999999999999999999999999999999
Q ss_pred -cchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 584 -PEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 584 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
.+. ..+......+...|+.+.|..+++.+++..|+++.
T Consensus 179 ~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 179 VLQA--DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp SCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 763 34555566667789999999999999999999876
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-16 Score=164.19 Aligned_cols=319 Identities=11% Similarity=0.013 Sum_probs=220.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF- 101 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 101 (703)
+.....|...+.... .|++++|...|+++++..|.+. .+|..++...... |++++|...|++++..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--------HDYAKALEYHHHDLTLA 77 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHH
Confidence 345677888888887 9999999999999999999985 4666666665543 8899999999999887
Q ss_pred -----cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc----cccHHHHHHHHHhcCC---------------
Q psy6461 102 -----MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH----HRVWPLYLSFVKSHAV--------------- 157 (703)
Q Consensus 102 -----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~--------------- 157 (703)
.|....++..++.++...|++++|...|++++...|.... ..++..++.++...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 3445678899999999999999999999999998774211 2356666666666666
Q ss_pred -----hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccc
Q psy6461 158 -----PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIR 232 (703)
Q Consensus 158 -----~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~ 232 (703)
+++|+..|++++...+ ..++.
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~----------------------------------------------------~~~~~-- 183 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVT----------------------------------------------------ALGDR-- 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------------------------------------------------HTTCH--
T ss_pred hHHHHHHHHHHHHHHHHHHHH----------------------------------------------------hccCc--
Confidence 3333333333332110 00000
Q ss_pred cccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6461 233 SLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAE 312 (703)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 312 (703)
.....++..+|.++...|++++|...|++++...+...+.....
T Consensus 184 ----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------------- 227 (406)
T 3sf4_A 184 ----------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER-------------------- 227 (406)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH--------------------
T ss_pred ----------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH--------------------
Confidence 01235788889999999999999999999887654322111000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCc
Q psy6461 313 NDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGK 390 (703)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 390 (703)
..+..++. ...|++++|+..|++++...+.......
T Consensus 228 ------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 228 ------------------------------------------RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp ------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 01111111 1128888899999988876432211122
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
...++..+|.++...|++++|...|++++...+.. ......++..++.++...|++++|...++++++..+.....
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-- 343 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK-- 343 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--
Confidence 36688899999999999999999999999874432 22234688999999999999999999999999765431000
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
......+...+.++...|+.
T Consensus 344 ---------~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 344 ---------SGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTT
T ss_pred ---------cchhHHHHHHHHHHHHhhHh
Confidence 01245666777777666653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=155.74 Aligned_cols=399 Identities=10% Similarity=0.039 Sum_probs=249.1
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 85 DPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLM-DQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
.|.+++|..+|+++- . +.....++. ..+++++|...++++ ..+.+|..++..+...|++++|+.
T Consensus 1062 lglyEEAf~IYkKa~----~----~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD----V----NTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred CCCHHHHHHHHHHcC----C----HHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 489999999999972 1 122222222 668899999998865 236889999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 164 VFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
.|.++ .+|.+....+..+...|++++|++.|..+....+ .
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~------------------------e-------------- 1166 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR------------------------E-------------- 1166 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------------------------c--------------
Confidence 99886 3333333345667899999999999987753110 0
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 323 (703)
+.+-..+|..|.+.++++. .+-| +. .++..+ ++ ..+......+ .
T Consensus 1167 --------~~Idt~LafaYAKl~rlee-le~f---I~-~~n~ad---~~-~iGd~le~eg-------------------~ 1210 (1630)
T 1xi4_A 1167 --------SYVETELIFALAKTNRLAE-LEEF---IN-GPNNAH---IQ-QVGDRCYDEK-------------------M 1210 (1630)
T ss_pred --------ccccHHHHHHHHhhcCHHH-HHHH---Hh-CCCHHH---HH-HHHHHHHhcC-------------------C
Confidence 0112237777888888885 3333 22 222221 21 1211111000 0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHH
Q psy6461 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKF 401 (703)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 401 (703)
...+...|.. ...|...+..+. |+++.|++.+++|. ...+|...+..
T Consensus 1211 YeeA~~~Y~k--------------------A~ny~rLA~tLvkLge~q~AIEaarKA~-----------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1211 YDAAKLLYNN--------------------VSNFGRLASTLVHLGEYQAAVDGARKAN-----------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHh--------------------hhHHHHHHHHHHHhCCHHHHHHHHHHhC-----------CHHHHHHHHHH
Confidence 1111112221 246666665433 88888888888762 34578888888
Q ss_pred HHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhH
Q psy6461 402 YEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSI 481 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 481 (703)
+...|++..|+..... +..+| +.+..++.+|...|.+++|+.++++++..+|.+ .
T Consensus 1260 cve~~Ef~LA~~cgl~-Iiv~~-------deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-----------------~ 1314 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-IVVHA-------DELEELINYYQDRGYFEELITMLEAALGLERAH-----------------M 1314 (1630)
T ss_pred HhhhhHHHHHHHHHHh-hhcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-----------------h
Confidence 8888889888887764 44444 445577888888999999999999999988764 5
Q ss_pred HHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC-----CcchHHHHH
Q psy6461 482 KLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-----PRYAKTLYL 556 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~ 556 (703)
.+|..++.++.... .+++-++.+.|...+.+.| .+ ..+|.
T Consensus 1315 gmftELaiLyaKy~---------------------------------peklmEhlk~f~~rini~k~~r~~e~--~~lW~ 1359 (1630)
T 1xi4_A 1315 GMFTELAILYSKFK---------------------------------PQKMREHLELFWSRVNIPKVLRAAEQ--AHLWA 1359 (1630)
T ss_pred HHHHHHHHHHHhCC---------------------------------HHHHHHHHHHHHHhcccchHhHHHHH--HHHHH
Confidence 66666666555432 1234667777777666544 23 46899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc----------cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHH
Q psy6461 557 LYAKLEEEHGLARHAMAVYERATGA----------VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 557 ~~a~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (703)
.+..+|.+.|++++|....-..... ..+.+.++++...+.|+.+ ....+..-+..++...-++..
T Consensus 1360 elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~--~~P~~lndLl~~l~~rlD~~R--- 1434 (1630)
T 1xi4_A 1360 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTR--- 1434 (1630)
T ss_pred HHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh--hChHHHHHHHHHhhhcCChHH---
Confidence 9999999999999998433222111 1111225677777888864 666666666666643333221
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHH
Q psy6461 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNED 677 (703)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~ 677 (703)
-..++.+.|++-.+...++. ++. .++..+=+.+.+.....++++
T Consensus 1435 ---~V~l~~~~~~l~lik~yl~~-vq~---~n~~~Vneal~el~ieeed~~ 1478 (1630)
T 1xi4_A 1435 ---AVNYFSKVKQLPLVKPYLRS-VQN---HNNKSVNESLNNLFITEEDYQ 1478 (1630)
T ss_pred ---HHHHHHHcCChHHhHHHHHH-HHH---hcchhhhHHHHHHhcCccchH
Confidence 23445567777776666543 332 223445555555554444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=155.95 Aligned_cols=248 Identities=12% Similarity=-0.020 Sum_probs=195.5
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|++++|+..|++++...+. ..+..+.+|..+|..+...|++++|+..|+++++.+|.++ .+|..++.++...|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 19 LQQEVILARMEQILASRAL--TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGN 92 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHhcccc--cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHccC
Confidence 6789999999999986321 1234678999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|+..|++++...|.+ ...|..++.++...|++
T Consensus 93 ~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~g~~---------------------------- 127 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTY-----------------NYAHLNRGIALYYGGRD---------------------------- 127 (275)
T ss_dssp HHHHHHHHHHHHHHCTTC-----------------THHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHhcCccc-----------------cHHHHHHHHHHHHhccH----------------------------
Confidence 999999999999999985 67888888888877665
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCch
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIP 605 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 605 (703)
++|...|+++++..|++. ...... .+....|++++|...+++++...|.+.. .+. .+......++.+
T Consensus 128 -------~~A~~~~~~a~~~~~~~~--~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 194 (275)
T 1xnf_A 128 -------KLAQDDLLAFYQDDPNDP--FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQ 194 (275)
T ss_dssp -------HHHHHHHHHHHHHCTTCH--HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHH
T ss_pred -------HHHHHHHHHHHHhCCCCh--HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH--HHH-HHHHHHHhcCHH
Confidence 999999999999999983 233333 3345679999999999999999887643 222 344445567788
Q ss_pred HHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 606 KTRQIYERAIESLPEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 606 ~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
+|...++++++..|... ...+|..++.++...|++++|+..|+++++..|.+ +..+.......|.++++.+.
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-----FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-----CHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHhhHHH
Confidence 99999999998877432 13488999999999999999999999999985433 23334444455555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=165.52 Aligned_cols=295 Identities=12% Similarity=0.047 Sum_probs=211.5
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF- 101 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 101 (703)
|.....+...+.... .|++++|+..|+++++..|.+. .+|..++..+... |++++|...|++++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--------GDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHH
Confidence 445566667777777 9999999999999999999987 4677777666554 8999999999999988
Q ss_pred -----cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc----cccccHHHHHHHHHhcCC---------------
Q psy6461 102 -----MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT----QHHRVWPLYLSFVKSHAV--------------- 157 (703)
Q Consensus 102 -----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~--------------- 157 (703)
.|....+|..++.++...|++++|...|++++...+.. ....++..++.++...|+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 56677899999999999999999999999999974311 234466667777777776
Q ss_pred --hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 158 --PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 158 --~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
+++|+..|+++++..+. . +.
T Consensus 197 ~~~~~A~~~~~~al~~~~~------------------------~----------------------------~~------ 218 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRD------------------------L----------------------------GD------ 218 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------------H----------------------------TC------
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------c----------------------------CC------
Confidence 44444444443322100 0 00
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~ 315 (703)
+.....++..+|.++...|++++|...|++++...+...+....
T Consensus 219 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------------------ 262 (411)
T 4a1s_A 219 ------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE------------------------ 262 (411)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH------------------------
Confidence 00123578889999999999999999999988765432211000
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 316 PSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
...+..++. ...|++++|+..|++++...+..........
T Consensus 263 --------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 263 --------------------------------------RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp --------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 001111111 1238888999999998876432211112357
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
++..+|.++...|++++|+..|++++...+.. ......++..++.++...|++++|...|++++...+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999874432 1223468889999999999999999999999998864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=167.59 Aligned_cols=221 Identities=9% Similarity=0.021 Sum_probs=187.3
Q ss_pred chhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh-HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCH
Q psy6461 368 PLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL-EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE 446 (703)
Q Consensus 368 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (703)
.+.++..++++... +| ....+|..+|..+...|++ ++|+..|+++++.+|.++ .+|..++.++...|++
T Consensus 84 ~~~al~~l~~~~~~-~~-----~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQ-----VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV----EAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHTT-CC-----CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcc-Cc-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Confidence 34566666665543 22 4678999999999999999 999999999999999987 8999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc--CChhHHHhHhhcCCCCchHHHHHHHHHHHH
Q psy6461 447 EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF--GTFKAYEKGIALFKWPYIFDIWNTYLTKFL 524 (703)
Q Consensus 447 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~al~~~~~~~~~~~~~~y~~~~~ 524 (703)
++|+..|+++++..|+ ...|..++.++... +.. .
T Consensus 154 ~~A~~~~~~al~~~p~------------------~~~~~~lg~~~~~~~~~~~--------------------------~ 189 (474)
T 4abn_A 154 TSAHTCFSGALTHCKN------------------KVSLQNLSMVLRQLQTDSG--------------------------D 189 (474)
T ss_dssp HHHHHHHHHHHTTCCC------------------HHHHHHHHHHHTTCCCSCH--------------------------H
T ss_pred HHHHHHHHHHHhhCCC------------------HHHHHHHHHHHHHhccCCh--------------------------h
Confidence 9999999999999997 57788888777765 111 0
Q ss_pred HHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc--------CChHHHHHHHHHHhhccC---cchHHHHHHH
Q psy6461 525 SRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH--------GLARHAMAVYERATGAVL---PEEMFEMFNI 593 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~~~ 593 (703)
. ..+++++|...|+++++.+|++ ...|..+|.++... |++++|+..|+++++..| .+ ...|..
T Consensus 190 ~--~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~ 263 (474)
T 4abn_A 190 E--HSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN--PDLHLN 263 (474)
T ss_dssp H--HHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC--HHHHHH
T ss_pred h--hhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC--HHHHHH
Confidence 0 0133599999999999999998 67999999999998 999999999999999999 66 557777
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
+...+...|++++|...|+++++..|+++. .+..++.++...|++++|+..+.+.
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAWPE--PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788888899999999999999999999876 8999999999999999999876543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=165.17 Aligned_cols=293 Identities=9% Similarity=0.009 Sum_probs=216.5
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..+..+|..+...|++++|+..|+++++..|+.... ..++...+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~---------------------------------- 94 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGN---------------------------------- 94 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHH----------------------------------
Confidence 467788999999999999999999999987753211 111111110
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
+....|++++|+..|++++.........+....++..+|.++...|++++|
T Consensus 95 -----------------------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 145 (411)
T 4a1s_A 95 -----------------------------AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145 (411)
T ss_dssp -----------------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHH
Confidence 001128889999999998876322111234578899999999999999999
Q ss_pred HHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 412 RLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQ-----------------EEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 412 ~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
...|++++...+. +......++..++.++...|+ +++|...+++++...+.....
T Consensus 146 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~------ 219 (411)
T 4a1s_A 146 AICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR------ 219 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH------
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH------
Confidence 9999999987321 112234789999999999999 899999998887654221000
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc--
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY-- 550 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 550 (703)
......+..++.++...|+ +++|...|+++++..|...
T Consensus 220 -----~~~~~~~~~la~~~~~~g~-----------------------------------~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 220 -----GAQGRACGNLGNTYYLLGD-----------------------------------FQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -----HHHHHHHHHHHHHHHHTTC-----------------------------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred -----HHHHHHHHHHHHHHHHcCC-----------------------------------hHHHHHHHHHHHHHHHhcCCc
Confidence 0023455555656555554 4999999999999876531
Q ss_pred --hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc--
Q psy6461 551 --AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE----EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP-- 622 (703)
Q Consensus 551 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 622 (703)
...++..++.++...|++++|...|++++...+.. ....++......+...|++++|...|+++++..++..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 12488999999999999999999999999887643 2245666777777889999999999999999865332
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 623 --TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 623 --~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
...++..++.++...|++++|...|++|+++.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 13478889999999999999999999999985
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-15 Score=154.48 Aligned_cols=292 Identities=11% Similarity=0.017 Sum_probs=202.6
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh----
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF---- 101 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 101 (703)
...|...+.... .|++++|...|+++++..|.+. .+|..++...... |++++|...|++++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--------HDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHhhcc
Confidence 456677777777 9999999999999999999995 5566666665543 8899999999999887
Q ss_pred --cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc----cccHHHHHHHHHhcCC------------------
Q psy6461 102 --MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH----HRVWPLYLSFVKSHAV------------------ 157 (703)
Q Consensus 102 --~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~------------------ 157 (703)
.|....++..++.++...|++++|...|+++++..|.... ..++..++.++...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 3445688899999999999999999999999998763211 2255566666666666
Q ss_pred --hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 158 --PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 158 --~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
+++|+..+++++... ... ++
T Consensus 157 ~~~~~A~~~~~~a~~~~------------------------~~~----------------------------~~------ 178 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLV------------------------TAL----------------------------GD------ 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHH------------------------HHH----------------------------TC------
T ss_pred HHHHHHHHHHHHHHHHH------------------------Hhc----------------------------CC------
Confidence 333333333332211 000 00
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~ 315 (703)
+.....++..+|..+...|++++|...|++++...+...+....
T Consensus 179 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------------------------ 222 (338)
T 3ro2_A 179 ------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE------------------------ 222 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH------------------------
Confidence 00113578888999999999999999999988764432211000
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 316 PSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
...+..++.+ ..|++++|...|++++...+..........
T Consensus 223 --------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 223 --------------------------------------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 0011111111 128888899999888876332211122366
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
++..+|.++...|++++|...|++++...+.. ......++..++.++...|++++|...+++++...+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999998874422 2223468889999999999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=159.21 Aligned_cols=294 Identities=11% Similarity=0.004 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..+...|..+...|++++|...|+++++..|+.... ..++...+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~----------------------------------- 50 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLG----------------------------------- 50 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-----------------------------------
Confidence 467788999999999999999999999987653211 11111100
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
.+....|++++|+..|++++.........+....++..+|.++...|++++|
T Consensus 51 ----------------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 102 (338)
T 3ro2_A 51 ----------------------------NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102 (338)
T ss_dssp ----------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHH
Confidence 0111128889999999998776322111223567899999999999999999
Q ss_pred HHHHHHhhccCCCCc--chHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhcCCCCCcccccc
Q psy6461 412 RLIFDKATLVPYTKV--EDLATVWCEWAELELRAGQ--------------------EEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 412 ~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...|++++...+... .....++..++.++...|+ +++|...+++++...+....
T Consensus 103 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~---- 178 (338)
T 3ro2_A 103 IVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD---- 178 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 999999998754332 2234588999999999999 89999988888765321000
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
.......+..++.++...|+ +++|...++++++..|..
T Consensus 179 -------~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 179 -------RAAQGRAFGNLGNTHYLLGN-----------------------------------FRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTC-----------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHhCC-----------------------------------HHHHHHHHHHHHHHHHhc
Confidence 00013445555555555554 489999999998875543
Q ss_pred c----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 550 Y----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 550 ~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
. ....+..++.++...|++++|...+++++...+... ....+......+...|++++|...++++++..|..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1 124889999999999999999999999998765431 23455566677777899999999999999876533
Q ss_pred c----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 622 P----TRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 622 ~----~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
. ...++..++.++...|++++|...|++++++.+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 2 133778889999999999999999999998854
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-16 Score=170.57 Aligned_cols=142 Identities=14% Similarity=0.204 Sum_probs=132.7
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.+|++.++|..++..+. +|++++|...|+++++.+|++...|..++..+... |++++|...|++|++.+|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~--------g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--------GKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCC
Confidence 47999999999999998 99999999999999999999999999999988765 8999999999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
++.+|..+|.++..+|++++|...|+++++.+| .+..+|..++.++...|++++|+..|+++++.+|++..
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999999999 56889999999999999999999999999999998853
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-14 Score=148.57 Aligned_cols=193 Identities=15% Similarity=0.047 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHcC---ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCc
Q psy6461 392 HTLWIEFGKFYEVND---QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA----GQEEAALRLMARATATPARPV 464 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~p~~~ 464 (703)
+.++..+|.++...| ++++|+..|+++....|... ..++.++.++... +++++|+.+|+++. |++
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a----~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~- 247 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA----QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY- 247 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS-
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC-
Confidence 347888999999898 99999999999999887765 6668888887554 68999999999988 553
Q ss_pred ccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q psy6461 465 AYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE 544 (703)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~ 544 (703)
+..++.++.++.... ..+++++|...|+++.+
T Consensus 248 ----------------~~a~~~Lg~~~~~~~--------------------------------~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 248 ----------------PASWVSLAQLLYDFP--------------------------------ELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp ----------------THHHHHHHHHHHHSG--------------------------------GGCCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhCC--------------------------------CCCCHHHHHHHHHHHHH
Confidence 567777776632110 12456999999999987
Q ss_pred hCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHH
Q psy6461 545 ACPPRYAKTLYLLYAKLEEEHG-----LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAI 615 (703)
Q Consensus 545 ~~p~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al 615 (703)
.. + +..+..+|.++. .| ++++|+..|+++. +.+.......+ .++.. ..++++|...|+++.
T Consensus 280 ~g--~--~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg--~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 280 AD--Q--PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLG--QIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp TT--C--HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHH--HHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred CC--C--HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHH--HHHHCCCCCCcCHHHHHHHHHHHH
Confidence 54 3 568889998887 56 9999999999999 55543333333 33322 238899999999998
Q ss_pred HhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccc
Q psy6461 616 ESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~ 654 (703)
+.. ++. ....++.++.. ..+.++|..+|++|.+..
T Consensus 350 ~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 350 RNG--QNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT--CTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hhC--hHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 753 334 56677777664 357999999999999873
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-15 Score=157.99 Aligned_cols=212 Identities=9% Similarity=0.026 Sum_probs=141.8
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHc----CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHH-H-
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVN----DQLEDARLIFDKATLVPYTKVEDLATVWCEWAEL-E- 440 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~- 440 (703)
+..+|+..|+++...-++ ....+..++.+|... +++++|+..|+++. |.++ ..++.++.+ +
T Consensus 194 ~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~----~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP----ASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST----HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH----HHHHHHHHHHHh
Confidence 667788888888876322 345567888888654 78899999999987 6666 788888887 3
Q ss_pred -HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHH
Q psy6461 441 -LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 441 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y 519 (703)
...+++++|..+|+++.... ++..++.++.++. .|.-
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~g-------------------~~~A~~~Lg~~y~-~G~g---------------------- 298 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAAD-------------------QPRAELLLGKLYY-EGKW---------------------- 298 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHH-HCSS----------------------
T ss_pred CCCCCCHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHH-cCCC----------------------
Confidence 35789999999999988654 2566777776665 3311
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
...++++|...|+++. |.+ +..+..+|.++.. .+++++|+..|+++.+...... ....+.+
T Consensus 299 --------~~~d~~~A~~~~~~Aa---~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A--~~~Lg~~ 363 (452)
T 3e4b_A 299 --------VPADAKAAEAHFEKAV---GRE--VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA--DFAIAQL 363 (452)
T ss_dssp --------SCCCHHHHHHHHHTTT---TTC--HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH--HHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHh---CCC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH--HHHHHHH
Confidence 1235688999999988 666 5688888888766 3388999999999988654432 2222222
Q ss_pred HHHH--HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q psy6461 596 KKAA--EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK--LGEIDRARAIYAHCSQ 652 (703)
Q Consensus 596 ~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~a~~ 652 (703)
...- -.++..+|...|+++.+..+. . ....+..+... .++..+|..+.++..+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~--~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP--E--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH--H--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH--H--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2110 134788899999998887543 2 22333333322 2346667766666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=139.39 Aligned_cols=212 Identities=8% Similarity=-0.035 Sum_probs=167.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
.+..|+..|..+...|++++|+..|+++++..| .+. .++..+|.++...|++++|+..|++++..+|++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------ 75 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------ 75 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch------
Confidence 357889999999999999999999999999987 665 778889999999999999999999999999984
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
..+|..++.++...|++ ++|...|+++++..|++
T Consensus 76 -----------~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 76 -----------ANAYIGKSAAYRDMKNN-----------------------------------QEYIATLTEGIKAVPGN 109 (228)
T ss_dssp -----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC
T ss_pred -----------HHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHHHCCCc
Confidence 78888888888877765 99999999999999998
Q ss_pred chH-----HHHHHHHHHHHHcCChHHHHHHHHHHhhccCc--chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc
Q psy6461 550 YAK-----TLYLLYAKLEEEHGLARHAMAVYERATGAVLP--EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP 622 (703)
Q Consensus 550 ~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (703)
... .+|..+|.++...|++++|+..|+++++..|+ +. ..+......+.. .+..+++++....+.+.
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~l~~~~~~-----~~~~~~~~a~~~~~~~~ 182 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT--DALYSLGVLFYN-----NGADVLRKATPLASSNK 182 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH--HHHHHHHHHHHH-----HHHHHHHHHGGGTTTCH
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH--HHHHHHHHHHHH-----HHHHHHHHHHhcccCCH
Confidence 311 56899999999999999999999999999998 53 344433333332 34566777887776653
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 623 TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 623 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
. .+ ........|.+++|+..|++++++. |+ +..+...+..+..
T Consensus 183 ~--~~--~~~~~~~~~~~~~A~~~~~~a~~l~-p~-~~~~~~~l~~i~~ 225 (228)
T 4i17_A 183 E--KY--ASEKAKADAAFKKAVDYLGEAVTLS-PN-RTEIKQMQDQVKA 225 (228)
T ss_dssp H--HH--HHHHHHHHHHHHHHHHHHHHHHHHC-TT-CHHHHHHHHHHHT
T ss_pred H--HH--HHHHHHHHHHHHHHHHHHHHHhhcC-CC-CHHHHHHHHHHHH
Confidence 2 22 2334456778999999999999995 44 5777777766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=159.94 Aligned_cols=213 Identities=10% Similarity=0.030 Sum_probs=188.9
Q ss_pred CChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHH
Q psy6461 406 DQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQE-EAALRLMARATATPARPVAYHDEAETVQARVYKSIKLW 484 (703)
Q Consensus 406 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
+.+++++..++++....|.+. .+|+.+|..+...|++ ++|+..|+++++.+|++ ...|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a----~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----------------~~a~ 140 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEA----QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----------------VEAW 140 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCH----HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----------------HHHH
T ss_pred HHHHHHHHHHHHHhccCchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----------------HHHH
Confidence 347788888888888888776 8999999999999999 99999999999999985 7899
Q ss_pred HHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q psy6461 485 SLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 564 (703)
..++.++...|++ ++|...|+++++.+|+ ...+..+|.++..
T Consensus 141 ~~lg~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~---~~~~~~lg~~~~~ 182 (474)
T 4abn_A 141 NQLGEVYWKKGDV-----------------------------------TSAHTCFSGALTHCKN---KVSLQNLSMVLRQ 182 (474)
T ss_dssp HHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHTTCCC---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhhCCC---HHHHHHHHHHHHH
Confidence 9999888887775 9999999999999998 3689999999999
Q ss_pred c---------CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh--------cCchHHHHHHHHHHHhCC---CcchH
Q psy6461 565 H---------GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI--------YGIPKTRQIYERAIESLP---EEPTR 624 (703)
Q Consensus 565 ~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~ 624 (703)
. |++++|+..|+++++..|++. ..|..+...+... |++++|...|+++++..| +++.
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD- 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH-
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH-
Confidence 9 999999999999999999984 4666666666666 889999999999999999 7665
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 625 QMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
+|..++.++...|++++|+..|++|+++. |+ ....|..+.......|..++|.+..
T Consensus 260 -~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 260 -LHLNRATLHKYEESYGEALEGFSQAAALD-PA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999994 44 5888999999999999888887643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-14 Score=138.44 Aligned_cols=230 Identities=11% Similarity=0.050 Sum_probs=179.8
Q ss_pred CCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH----cCChHHHHHHHHHhhccCC
Q psy6461 350 NPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV----NDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 350 ~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~ 423 (703)
+|.++.+++.++.++ .|++++|+..|+++++. ..+.++..+|.++.. .+++++|+..|+++++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 466677777776644 38899999999998872 245688889999998 999999999999998874
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhH
Q psy6461 424 TKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA 499 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (703)
++ ..+..++.++.. .+++++|+..|++++... ++..+..++.++.....
T Consensus 73 -~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------------~~~a~~~lg~~~~~~~~--- 125 (273)
T 1ouv_A 73 -YS----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------------------YAEGCASLGGIYHDGKV--- 125 (273)
T ss_dssp -CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHCSS---
T ss_pred -CH----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------------------CccHHHHHHHHHHcCCC---
Confidence 44 788899999988 999999999999998874 26777777777766100
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHH
Q psy6461 500 YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVY 575 (703)
Q Consensus 500 ~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~ 575 (703)
..+++++|...|+++++..+ +..+..++.++.. .|++++|+..|
T Consensus 126 ----------------------------~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 126 ----------------------------VTRDFKKAVEYFTKACDLND----GDGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp ----------------------------SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred ----------------------------cccCHHHHHHHHHHHHhcCc----HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 02345899999999998763 4578889999888 89999999999
Q ss_pred HHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy6461 576 ERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIY 647 (703)
Q Consensus 576 ~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~ 647 (703)
+++++..+. ..+......+.. .+++++|...|+++++..| ...+..++.++.. .|++++|+.+|
T Consensus 174 ~~a~~~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 174 DKACDLKDS----PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENF 245 (273)
T ss_dssp HHHHHTTCH----HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred HHHHHCCCH----HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 999987543 344455556666 7899999999999999866 3378888888888 89999999999
Q ss_pred HHHhcccC
Q psy6461 648 AHCSQICD 655 (703)
Q Consensus 648 ~~a~~~~~ 655 (703)
++|++..+
T Consensus 246 ~~a~~~~~ 253 (273)
T 1ouv_A 246 KKGCKLGA 253 (273)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99998843
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=165.04 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=135.6
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
|+.++++..+|.++...|++++|+..|+++++++|++. ..|..+|.++.+.|++++|+..|++|++.+|++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----- 76 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----- 76 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence 34677788888888888888888888888888888776 778888888888888888888888888888874
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
...|..++.++...|++ ++|++.|+++++++|+
T Consensus 77 ------------~~a~~nLg~~l~~~g~~-----------------------------------~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 77 ------------ADAYSNMGNTLKEMQDV-----------------------------------QGALQCYTRAIQINPA 109 (723)
T ss_dssp ------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTT
T ss_pred ------------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCC
Confidence 67777777777776664 7888888888888888
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q psy6461 549 RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (703)
+ ..+|..+|.++...|++++|+..|+++++..|++ ...+..++..+...+++++|.+.|+++++..|
T Consensus 110 ~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 110 F--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 7 5688888888888888888888888888888877 44566666677777888888888888887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=137.09 Aligned_cols=195 Identities=9% Similarity=0.018 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC-CCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPA-RPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
..|+..|..+...|++++|+..|++++...| .+ ...+...+.++...|++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~~~~~~------------ 58 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-----------------SVTAYNCGVCADNIKKY------------ 58 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-----------------HHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-----------------cHHHHHHHHHHHHhhcH------------
Confidence 7899999999999999999999999999997 53 66777777777776665
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH-
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF- 588 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 588 (703)
++|...|+++++.+|++ ..+|..+|.++...|++++|+..|+++++..|++...
T Consensus 59 -----------------------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 113 (228)
T 4i17_A 59 -----------------------KEAADYFDIAIKKNYNL--ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE 113 (228)
T ss_dssp -----------------------HHHHHHHHHHHHTTCSH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCcch--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 99999999999999998 6799999999999999999999999999999998533
Q ss_pred ----HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHh
Q psy6461 589 ----EMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGF 662 (703)
Q Consensus 589 ----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 662 (703)
.+|..........|++++|...|+++++..|+ ++. .|..++.++...| ...++++..+.+.+ ...
T Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~l~~~~~~~~-----~~~~~~a~~~~~~~--~~~ 184 (228)
T 4i17_A 114 KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD--ALYSLGVLFYNNG-----ADVLRKATPLASSN--KEK 184 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH--HHHHHHHHHHHHH-----HHHHHHHGGGTTTC--HHH
T ss_pred HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH--HHHHHHHHHHHHH-----HHHHHHHHhcccCC--HHH
Confidence 45666666777789999999999999999998 655 8888888886655 45567777774333 222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 663 WAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 663 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
+ ........|.+++|...++.+..+.
T Consensus 185 ~--~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 185 Y--ASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2 2333455577888888887666553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-13 Score=132.76 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=189.8
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPVA 465 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~ 465 (703)
+.+.+++.+|..+...|++++|+..|+++++ |.++ ..+..++.++.. .+++++|...|+++++.. +
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-- 73 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-- 73 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C--
Confidence 4577899999999999999999999999998 5565 789999999999 999999999999999885 1
Q ss_pred cccchhhHHHHHHhhHHHHHHHHHHHHh----cCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q psy6461 466 YHDEAETVQARVYKSIKLWSLYADLEES----FGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQ 541 (703)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~ 541 (703)
+..+..++.++.. .++ +++|...|++
T Consensus 74 ---------------~~a~~~lg~~~~~g~~~~~~-----------------------------------~~~A~~~~~~ 103 (273)
T 1ouv_A 74 ---------------SNGCHLLGNLYYSGQGVSQN-----------------------------------TNKALQYYSK 103 (273)
T ss_dssp ---------------HHHHHHHHHHHHHTSSSCCC-----------------------------------HHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhCCCCcccC-----------------------------------HHHHHHHHHH
Confidence 6778888877776 444 5999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHH
Q psy6461 542 CLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYER 613 (703)
Q Consensus 542 al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~ 613 (703)
+++.. + +..+..++.++.. .|++++|...|+++++..+.. .+..+...+.. .+++++|...|++
T Consensus 104 a~~~~--~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 104 ACDLK--Y--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD----GCTILGSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHTT--C--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHcC--C--ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99974 3 5789999999999 999999999999999987533 44445555555 7899999999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHH
Q psy6461 614 AIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT----HGNEDTMREMLRI 685 (703)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 685 (703)
+++..+ ...+..++.++.. .|++++|+.+|+++++.. ++..+..++.+... .|+.++|.+.+++
T Consensus 176 a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 176 ACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 998743 3378899999999 999999999999999873 36688888888888 8999999999976
Q ss_pred HHHHH
Q psy6461 686 KRSVQ 690 (703)
Q Consensus 686 ~~~~~ 690 (703)
+..+.
T Consensus 248 a~~~~ 252 (273)
T 1ouv_A 248 GCKLG 252 (273)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 66543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=152.42 Aligned_cols=254 Identities=15% Similarity=0.105 Sum_probs=180.7
Q ss_pred hcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-
Q psy6461 348 RQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP- 422 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 422 (703)
..+|.....|..++..+ .|++++|+..|++++....... ..+....++..+|.++...|++++|+..|++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44677777787777654 3999999999999988521110 112457889999999999999999999999999873
Q ss_pred ----CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-----CCCcccccchhhHHHHHHhhHHHHHHHHHHHHh
Q psy6461 423 ----YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATP-----ARPVAYHDEAETVQARVYKSIKLWSLYADLEES 493 (703)
Q Consensus 423 ----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (703)
+..+ ....++..++.++...|++++|...|++++... ++. ......+..++.++..
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~la~~~~~ 165 (311)
T 3nf1_A 101 KTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH--------------PDVAKQLNNLALLCQN 165 (311)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHT
T ss_pred HHhCCCCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC--------------hHHHHHHHHHHHHHHH
Confidence 2222 334789999999999999999999999998764 221 0124566666666666
Q ss_pred cCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHc
Q psy6461 494 FGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--------CPPRYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 494 ~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~ 565 (703)
.|+ +++|...|+++++. .|.. ..++..++.++...
T Consensus 166 ~~~-----------------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 166 QGK-----------------------------------YEEVEYYYQRALEIYQTKLGPDDPNV--AKTKNNLASCYLKQ 208 (311)
T ss_dssp TTC-----------------------------------HHHHHHHHHHHHHHHHHTSCTTCHHH--HHHHHHHHHHHHHH
T ss_pred cCC-----------------------------------HHHHHHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHHHc
Confidence 555 48999999999987 4443 46899999999999
Q ss_pred CChHHHHHHHHHHhhccCcc---------hH----HHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHH
Q psy6461 566 GLARHAMAVYERATGAVLPE---------EM----FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAE 632 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~---------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (703)
|++++|...|++++...|.. .. ...+..........+.+.++...+.+++...|.... ++..++.
T Consensus 209 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~la~ 286 (311)
T 3nf1_A 209 GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTT--TLKNLGA 286 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHH--HHHHHHH
Confidence 99999999999999865431 10 111222222223356778888888888887776544 8999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccC
Q psy6461 633 METKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 633 ~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
++.+.|++++|...|++|+++.+
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998843
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=143.86 Aligned_cols=240 Identities=12% Similarity=0.018 Sum_probs=176.9
Q ss_pred hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHHH
Q psy6461 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAELE 440 (703)
Q Consensus 364 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~ 440 (703)
..|++++|+..|++++..............++..+|.++...|++++|+..|++++...+... .....++..+|.++
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 349999999999999886332222223568899999999999999999999999998854432 22356889999999
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
...|++++|...|++++...+...+. ......+..++.++...|+
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~g~------------------------ 239 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQP-----------QLMGRTLYNIGLCKNSQSQ------------------------ 239 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHHCCC------------------------
Confidence 99999999999999999775532000 0013456666666666655
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHH-----hC-CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch---HHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLE-----AC-PPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE---MFEMF 591 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 591 (703)
+++|...|+++++ .. |.. ..++..+|.++...|++++|...+++++...+... ....+
T Consensus 240 -----------~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 306 (383)
T 3ulq_A 240 -----------YEDAIPYFKRAIAVFEESNILPSL--PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306 (383)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4999999999999 44 554 57899999999999999999999999998864321 11122
Q ss_pred HHHHHHHHHhcC---chHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 592 NIYIKKAAEIYG---IPKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 592 ~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
..........|+ +.+|..++++. +..+ ...++..++.++...|++++|...|++++++.+
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334444444566 66677766665 2222 234778899999999999999999999988743
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=134.44 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=141.3
Q ss_pred HhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHH
Q psy6461 24 ILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSL 99 (703)
Q Consensus 24 l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 99 (703)
...+|.+.+.+...+.... .|++++|...|+++++.+|.+ ...|..++..+... |++++|...|++++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~~l 79 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN--------KEYLLAASEYERFI 79 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh--------CcHHHHHHHHHHHH
Confidence 3467899999999998888 999999999999999999999 88888888877654 88999999999999
Q ss_pred HhcCCC---HHHHHHHHHHHHh--------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 100 VFMHKM---PRIWLDYGRFLMD--------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 100 ~~~p~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
+..|++ +.++..++.++.. .|++++|...|+++++..|.+ ...+.....+....+.. +..
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~~~~~~~~~--~~~----- 150 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH--ELVDDATQKIRELRAKL--ARK----- 150 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC--TTHHHHHHHHHHHHHHH--HHH-----
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc--hhHHHHHHHHHHHHHHH--HHH-----
Confidence 998865 5678899999998 999999999999999999953 45553332221111000 000
Q ss_pred HhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhc
Q psy6461 169 LKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYT 248 (703)
Q Consensus 169 l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (703)
.......+...|++++|+..|++++.. +|+..
T Consensus 151 -------~~~la~~~~~~g~~~~A~~~~~~~l~~------------------------~p~~~----------------- 182 (261)
T 3qky_A 151 -------QYEAARLYERRELYEAAAVTYEAVFDA------------------------YPDTP----------------- 182 (261)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------CTTST-----------------
T ss_pred -------HHHHHHHHHHccCHHHHHHHHHHHHHH------------------------CCCCc-----------------
Confidence 001123344556666666665555421 11100
Q ss_pred cchhhHHHHHHHHHHHh----------CchHHHHHHHHHHHhhcCCcccH
Q psy6461 249 DQLGHLWNSLADYYIRS----------GLFERARDIYEEAIQTVTTVRDF 288 (703)
Q Consensus 249 ~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~l~~~~~~~~~ 288 (703)
....++..+|..|... |++++|...|+++++..|+....
T Consensus 183 -~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 183 -WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp -THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred -hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 1135677888888766 89999999999999999976533
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-14 Score=137.28 Aligned_cols=192 Identities=14% Similarity=0.004 Sum_probs=142.6
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+..++..|..+...|++++|+..|+++++..|.++ ....+++.+|.++.+.|++++|+..|++++...|++.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 86 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP----- 86 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----
Confidence 4577889999999999999999999999999998873 1138899999999999999999999999999988641
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
.....++..+.++...+.. .....+++++|...|+++++..|++
T Consensus 87 ---------~~~~a~~~lg~~~~~~~~~---------------------------~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 87 ---------RVPQAEYERAMCYYKLSPP---------------------------YELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp ---------THHHHHHHHHHHHHHHCCC---------------------------TTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ---------hhHHHHHHHHHHHHHhccc---------------------------ccccchhHHHHHHHHHHHHHHCcCc
Confidence 1256677777666652110 0001234599999999999999987
Q ss_pred ch-HHHH--------------HHHHHHHHHcCChHHHHHHHHHHhhccCcch-HHHHHHHHHHHHHHh----------cC
Q psy6461 550 YA-KTLY--------------LLYAKLEEEHGLARHAMAVYERATGAVLPEE-MFEMFNIYIKKAAEI----------YG 603 (703)
Q Consensus 550 ~~-~~~~--------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~----------~~ 603 (703)
.. ..+. +.+|.++...|++++|+..|+++++..|++. ....+...+..+... |+
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~ 210 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER 210 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence 32 1122 6778888888888888888888888888743 223333333333333 67
Q ss_pred chHHHHHHHHHHHhCCCcch
Q psy6461 604 IPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~ 623 (703)
+++|...|+++++..|+++.
T Consensus 211 ~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 211 YRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHCCCChH
Confidence 78888888888888888764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=127.31 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
..++..+|..+...|++++|+..|+++++..|.++ .++..++.++...|++++|...+++++...|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 75 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLADAPDN-------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Confidence 44566666667777777777777777777666665 666677777777777777777777777666653
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..+|..++.++...|++ ++|...|+++++..|.+
T Consensus 76 ---------~~~~~~~a~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~-- 109 (186)
T 3as5_A 76 ---------VKVATVLGLTYVQVQKY-----------------------------------DLAVPLLIKVAEANPIN-- 109 (186)
T ss_dssp ---------HHHHHHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHHHCTTC--
T ss_pred ---------HHHHHHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHhcCcHh--
Confidence 55566666555555443 66777777777766665
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCc
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (703)
...+..++.++...|++++|...+++++...|.+ ...+...+..+...|++++|...++++++..|++
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE--GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4566666666666666666666666666665554 2333444444444455555555555555554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=145.07 Aligned_cols=377 Identities=12% Similarity=0.108 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...++++ +++.+|..+|..+...|++++|...|.++ | ++..|...+......|++++|+..+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~---D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----D---DPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----C---CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6688888888887 34579999999999999999999999874 2 2346777777777788899999988
Q ss_pred HHHHhhCCCCH--HHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhH
Q psy6461 166 RRYLKLFPEDA--EDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGG 243 (703)
Q Consensus 166 ~~~l~~~p~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (703)
+.+.+..|+.. ..++..+.+.|++.++...++ .|
T Consensus 85 ~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------------------------~p--------------- 120 (449)
T 1b89_A 85 QMARKKARESYVETELIFALAKTNRLAELEEFIN-----------------------------GP--------------- 120 (449)
T ss_dssp ------------------------CHHHHTTTTT-----------------------------CC---------------
T ss_pred HHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------CC---------------
Confidence 88877543321 134556677788877654432 11
Q ss_pred hhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHH
Q psy6461 244 LRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIE 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 323 (703)
....|..+|+.+...|++++|+..|.++ ..+..+-..+
T Consensus 121 -------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L---------------------------- 158 (449)
T 1b89_A 121 -------NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTL---------------------------- 158 (449)
T ss_dssp -----------------------CTTTHHHHHHHT-------TCHHHHHHHH----------------------------
T ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHH----------------------------
Confidence 1247999999999999999999999975 1221111000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHH
Q psy6461 324 LELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYE 403 (703)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 403 (703)
...|++++|++.|+++. .+.+|...+..+.
T Consensus 159 ---------------------------------------~~Lg~yq~AVea~~KA~-----------~~~~Wk~v~~aCv 188 (449)
T 1b89_A 159 ---------------------------------------VHLGEYQAAVDGARKAN-----------STRTWKEVCFACV 188 (449)
T ss_dssp ---------------------------------------HTTTCHHHHHHHHHHHT-----------CHHHHHHHHHHHH
T ss_pred ---------------------------------------HHhccHHHHHHHHHHcC-----------CchhHHHHHHHHH
Confidence 01188999999999872 3668999999999
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
..|+++.|....... ..+|. -...++.+|.+.|++++|+.++++++..++.. ..+
T Consensus 189 ~~~ef~lA~~~~l~L-~~~ad-------~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-----------------~~~ 243 (449)
T 1b89_A 189 DGKEFRLAQMCGLHI-VVHAD-------ELEELINYYQDRGYFEELITMLEAALGLERAH-----------------MGM 243 (449)
T ss_dssp HTTCHHHHHHTTTTT-TTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-----------------HHH
T ss_pred HcCcHHHHHHHHHHH-HhCHh-------hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH-----------------HHH
Confidence 999999997766542 24442 23357888899999999999999999999875 678
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC-----CcchHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP-----PRYAKTLYLLY 558 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~ 558 (703)
|..++.++...+- +++.+..+.|...+.+.| .+ ..+|..+
T Consensus 244 ftel~il~~ky~p---------------------------------~k~~ehl~~~~~~ini~k~~~~~~~--~~~w~e~ 288 (449)
T 1b89_A 244 FTELAILYSKFKP---------------------------------QKMREHLELFWSRVNIPKVLRAAEQ--AHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCH---------------------------------HHHHHHHHHHSTTSCHHHHHHHHHT--TTCHHHH
T ss_pred HHHHHHHHHhcCH---------------------------------HHHHHHHHHHHHHhcCcHHHHHHHH--HHHHHHH
Confidence 8888777665421 123445555554444433 22 3589999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc------------cCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHH
Q psy6461 559 AKLEEEHGLARHAMAVYERATGA------------VLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQM 626 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (703)
..++...|+++.|....-..... .+.+ .+++...+.|+.+ ..+.+..-+..++...-|+..
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n--~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~~r--- 361 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN--VELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTR--- 361 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS--THHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHH---
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH--HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCcHH---
Confidence 99999999999988765544322 2222 4567777777764 556666666666633223222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 627 CLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
-..+..+.|.+.-+...++.+.. .++..+=+.+-++.-..++++..++.++
T Consensus 362 ---~v~~~~~~~~l~l~~~yl~~v~~----~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 362 ---AVNYFSKVKQLPLVKPYLRSVQN----HNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp ---HHHHHHHTTCTTTTHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHcCCcHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 23445678888777777754332 2367788888888888898888887776
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-14 Score=144.99 Aligned_cols=219 Identities=12% Similarity=0.050 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccH-HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDF-TQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLAR 330 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (703)
..++..+|.+|...|++++|...|++++...+...+. ...
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------------------------------------- 183 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL--------------------------------------- 183 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH---------------------------------------
Confidence 3688999999999999999999999999875543321 000
Q ss_pred HHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 331 LEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
...+..++.+ ..|++++|+..|++++...+.....+....++..+|.++...|++
T Consensus 184 -----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 184 -----------------------LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 0011111111 128999999999999987432221223456899999999999999
Q ss_pred HHHHHHHHHhhcc-----C-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 409 EDARLIFDKATLV-----P-YTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 409 ~~A~~~~~~al~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
++|+..|++++++ + |.. ..++..+|.++...|++++|...+++++...+...+ + ....
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------~------~~~~ 304 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSL----PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD------V------IYLS 304 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------H------HHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------H------HHHH
Confidence 9999999999984 3 333 488999999999999999999999999987542100 0 0011
Q ss_pred HHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 483 LWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLE 562 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 562 (703)
.+..++.++...|+. ...++|...+++. ...|.. ..++..+|.++
T Consensus 305 ~~~~l~~~~~~~~~~--------------------------------~~~~~al~~~~~~-~~~~~~--~~~~~~la~~y 349 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDE--------------------------------EAIQGFFDFLESK-MLYADL--EDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHHHTSSCCH--------------------------------HHHHHHHHHHHHT-TCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcH--------------------------------HHHHHHHHHHHHC-cCHHHH--HHHHHHHHHHH
Confidence 133344444444431 0036777777775 222222 46888999999
Q ss_pred HHcCChHHHHHHHHHHhhccC
Q psy6461 563 EEHGLARHAMAVYERATGAVL 583 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p 583 (703)
...|++++|...|++++....
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-13 Score=124.30 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCC
Q psy6461 430 ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKW 509 (703)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~ 509 (703)
...+..++..+...|++++|+..+++++...|.+ ...+..++.++...|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~------------ 58 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-----------------VDVALHLGIAYVKTGAV------------ 58 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-----------------HHHHHHHHHHHHHTTCH------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-----------------hHHHHHHHHHHHHcCCH------------
Confidence 4778889999999999999999999999999874 67888888877776665
Q ss_pred CchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHH
Q psy6461 510 PYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFE 589 (703)
Q Consensus 510 ~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 589 (703)
++|...++++++..|.+ ..++..++.++...|++++|...+++++...|.+ ..
T Consensus 59 -----------------------~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~ 111 (186)
T 3as5_A 59 -----------------------DRGTELLERSLADAPDN--VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN--FN 111 (186)
T ss_dssp -----------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred -----------------------HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh--HH
Confidence 99999999999999988 6799999999999999999999999999999987 45
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 590 MFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
++...+..+...|++++|...++++++..|+++. ++..++.++...|++++|...++++++..|.
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 6667777777889999999999999999998765 8999999999999999999999999988544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-12 Score=133.44 Aligned_cols=325 Identities=11% Similarity=0.019 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccc----cHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHR----VWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEY 182 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 182 (703)
.++...+.++...|++++|...+++++...|.. .+. ++...+.++...|+++.|+..+++++...|....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 88 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----- 88 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----
Confidence 445566777778899999999999999887742 111 3344455666677777777777777665432210
Q ss_pred HHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHH
Q psy6461 183 LSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYY 262 (703)
Q Consensus 183 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (703)
+. .....+..+|.++
T Consensus 89 ---------------------------------------------~~--------------------~~~~~~~~la~~~ 103 (373)
T 1hz4_A 89 ---------------------------------------------WH--------------------YALWSLIQQSEIL 103 (373)
T ss_dssp ---------------------------------------------HH--------------------HHHHHHHHHHHHH
T ss_pred ---------------------------------------------HH--------------------HHHHHHHHHHHHH
Confidence 00 0123567889999
Q ss_pred HHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6461 263 IRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLL 342 (703)
Q Consensus 263 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (703)
...|++++|...|++++...+....
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~------------------------------------------------------- 128 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHL------------------------------------------------------- 128 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhcc-------------------------------------------------------
Confidence 9999999999999999875421100
Q ss_pred hhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q psy6461 343 NSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420 (703)
Q Consensus 343 ~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 420 (703)
..+|.....+..++. ...|++++|...+++++...+... .+.....+..++.++...|++++|...+++++.
T Consensus 129 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 129 -----EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp -----TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000111111111111 123999999999999998754322 122456788899999999999999999999987
Q ss_pred cCC--CCcch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCCh
Q psy6461 421 VPY--TKVED-LATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF 497 (703)
Q Consensus 421 ~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
..+ ..+.. ........+.++...|++++|...+++++...|..... ....+..++.++...|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~la~~~~~~g~- 268 (373)
T 1hz4_A 203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-------------LQGQWRNIARAQILLGE- 268 (373)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-------------GHHHHHHHHHHHHHTTC-
T ss_pred HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh-------------hHHHHHHHHHHHHHcCC-
Confidence 632 22100 00111134455778999999999999999876542100 12234455555555554
Q ss_pred hHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHH
Q psy6461 498 KAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 498 ~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
+++|...+++++...+... ...++..++.++...|++++|+.
T Consensus 269 ----------------------------------~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 269 ----------------------------------FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4889999998887644311 12478888999999999999999
Q ss_pred HHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q psy6461 574 VYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE 620 (703)
Q Consensus 574 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (703)
.+++++...+.. ++..+....| +....++++++...|-
T Consensus 315 ~l~~al~~~~~~-------g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 315 VLLDALKLANRT-------GFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHH-------CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccc-------cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 999999876642 1222222223 5677788888887774
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-12 Score=136.64 Aligned_cols=239 Identities=12% Similarity=-0.027 Sum_probs=171.7
Q ss_pred hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHH
Q psy6461 363 LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAEL 439 (703)
Q Consensus 363 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~ 439 (703)
...|++++|+..|++++.........+....++..+|.++...|+++.|...+++++...+... .....++..+|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 3459999999999999876432222234567899999999999999999999999998754432 2345788899999
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHH
Q psy6461 440 ELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTY 519 (703)
Q Consensus 440 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y 519 (703)
+...|++++|...|.+++...+..... .....++..++.++...|++
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~~~~---------------------- 238 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQND-----------RFIAISLLNIANSYDRSGDD---------------------- 238 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHTCH----------------------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHCCCH----------------------
Confidence 999999999999999999764321000 00234566666666666554
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHH-----hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc--h-HHHHH
Q psy6461 520 LTKFLSRYGGTKLERARDLFEQCLE-----ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE--E-MFEMF 591 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~-~~~~~ 591 (703)
++|...|+++++ ..|.. ..++..+|.++...|++++|...+++++...+.. . ....+
T Consensus 239 -------------~~A~~~~~~al~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 239 -------------QMAVEHFQKAAKVSREKVPDLL--PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHhhCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998 66665 5789999999999999999999999999886532 1 11222
Q ss_pred HHHHHHHHHhcC---chHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 592 NIYIKKAAEIYG---IPKTRQIYERAIESLPEEP-TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 592 ~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..........++ +.+|...+++ ....+ ...++..+|.++...|++++|...|+++++.
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~----~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEK----KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222223333344 5556655554 12221 2347778899999999999999999999876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=126.45 Aligned_cols=133 Identities=12% Similarity=0.117 Sum_probs=115.6
Q ss_pred HHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy6461 37 YIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRF 115 (703)
Q Consensus 37 ~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 115 (703)
++.... .+++++|++.|++++...|+++..|..++..+... |++++|...|+++++.+|+++.+|..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~--------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA--------KEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445555 78999999999999999999999999988887764 889999999999999999999999999999
Q ss_pred HHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH-HHHHHhhCCCCHHHH
Q psy6461 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV-FRRYLKLFPEDAEDY 179 (703)
Q Consensus 116 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~ 179 (703)
+...|++++|...|+++++.+| .++.+|..++.++...|+.++|... ++++++.+|++...+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 9999999999999999999999 4588899999999899988776665 589999999998754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=127.60 Aligned_cols=170 Identities=9% Similarity=-0.006 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCE----------------WAELELRAGQEEAALRLMA 454 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~ 454 (703)
+.+.++..|..+...|++++|+..|+++++.+|.++ ..|+. ++.++.+.|++++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345677788888899999999999999999998876 67777 7888888888888888888
Q ss_pred HHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhH
Q psy6461 455 RATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLER 534 (703)
Q Consensus 455 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 534 (703)
++++.+|++ ...|..++.++...|++ ++
T Consensus 79 ~al~~~p~~-----------------~~~~~~lg~~~~~~g~~-----------------------------------~~ 106 (208)
T 3urz_A 79 ELLQKAPNN-----------------VDCLEACAEMQVCRGQE-----------------------------------KD 106 (208)
T ss_dssp HHHHHCTTC-----------------HHHHHHHHHHHHHHTCH-----------------------------------HH
T ss_pred HHHHHCCCC-----------------HHHHHHHHHHHHHcCCH-----------------------------------HH
Confidence 888888874 67777777777776664 78
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC--hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 535 ARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL--ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 535 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
|...|+++++.+|++ +.+|..+|.++...|. ...+...+.+++...|.. ..+..........|++++|+..|+
T Consensus 107 A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 107 ALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ---YARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH---HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHccCHHHHHHHHH
Confidence 888888888888887 5678888777655543 344555666655433221 111112222233567777777777
Q ss_pred HHHHhCCCc
Q psy6461 613 RAIESLPEE 621 (703)
Q Consensus 613 ~al~~~p~~ 621 (703)
++++..|++
T Consensus 182 ~al~l~P~~ 190 (208)
T 3urz_A 182 KVILRFPST 190 (208)
T ss_dssp HHTTTSCCH
T ss_pred HHHHhCCCH
Confidence 777777764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=126.82 Aligned_cols=138 Identities=10% Similarity=0.006 Sum_probs=103.4
Q ss_pred CCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC
Q psy6461 27 NPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM 105 (703)
Q Consensus 27 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (703)
||...+.+...+.... .|++++|...|+++++.+|+++..|..++..+... |++++|...|++++...| +
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p-~ 72 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET--------KQFELAQELLATIPLEYQ-D 72 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT--------TCHHHHHHHHTTCCGGGC-C
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC--------CCHHHHHHHHHHhhhccC-C
Confidence 5666777778887776 88888888888888888888888888888877654 788888888888888888 7
Q ss_pred HHHHHHHHHHHH-hccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 106 PRIWLDYGRFLM-DQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 106 ~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
+..+...+.+.. ..+....|...|+++++..| .+..+|..++.++...|++++|+..|+++++.+|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 73 NSYKSLIAKLELHQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 776655554432 22344457888888888888 457778888888888888888888888888877764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-12 Score=124.92 Aligned_cols=235 Identities=9% Similarity=0.071 Sum_probs=193.2
Q ss_pred CchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC--ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHH----
Q psy6461 367 KPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND--QLEDARLIFDKATLVPYTKVEDLATVWCEWAELE---- 440 (703)
Q Consensus 367 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---- 440 (703)
..++|+..+++++... | ....+|...+.++...| .+++++..+++++..+|++. .+|..-+.++
T Consensus 48 ~s~~aL~~t~~~L~~n-P-----~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINEL-A-----SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQLIIGQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-c-----HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHHHHHHHHH
Confidence 3468999999999874 3 36789999999999888 99999999999999999998 9999988887
Q ss_pred HHc---CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 441 LRA---GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 441 ~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
... +++++++..++++++.+|++ ..+|.....+....|..
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkn-----------------y~aW~~R~~vl~~l~~~-------------------- 160 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKN-----------------HHVWSYRKWLVDTFDLH-------------------- 160 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCT--------------------
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccc--------------------
Confidence 555 78999999999999999985 88999988777776654
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC------hHHHHHHHHHHhhccCcchHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL------ARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
...++.+.++++++.+|.+ ..+|..-+.+....|. +++++..+++++...|.+.+.+.+
T Consensus 161 -------------~~~~EL~~~~~~i~~d~~N--~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 161 -------------NDAKELSFVDKVIDTDLKN--NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp -------------TCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 0138999999999999999 4599999999888887 899999999999999999665555
Q ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHH
Q psy6461 592 NIYIKKAAEIYG-IPKTRQIYERAIESL---PEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWK 667 (703)
Q Consensus 592 ~~~~~~~~~~~~-~~~A~~~~~~al~~~---p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 667 (703)
...+. ...|. .+.+...+++++... |.++. ++..+++++.+.|+.++|...|+++.+..+|- ...+|...+
T Consensus 226 ~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 226 LLGIH--ERFDRSITQLEEFSLQFVDLEKDQVTSSF--ALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp HHHHH--HHTTCCGGGGHHHHHTTEEGGGTEESCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HHHHH--HhcCCChHHHHHHHHHHHhccCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 54443 33444 555677888888765 65555 78888999999999999999999998744565 588888654
Q ss_pred H
Q psy6461 668 S 668 (703)
Q Consensus 668 ~ 668 (703)
.
T Consensus 301 ~ 301 (306)
T 3dra_A 301 S 301 (306)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=140.05 Aligned_cols=248 Identities=13% Similarity=0.043 Sum_probs=175.8
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC-----CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY-----TKVEDLATVWCEWAELELRAGQEEAALRLMARATATP--- 460 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 460 (703)
+....++..+|..+...|++++|+.+|+++++... .+ .....++..++.++...|++++|...+++++...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998511 11 1234789999999999999999999999998763
Q ss_pred --CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHH
Q psy6461 461 --ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDL 538 (703)
Q Consensus 461 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~ 538 (703)
+++ ......+..++.++...|++ ++|...
T Consensus 103 ~~~~~--------------~~~~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~ 133 (311)
T 3nf1_A 103 LGKDH--------------PAVAATLNNLAVLYGKRGKY-----------------------------------KEAEPL 133 (311)
T ss_dssp HCTTC--------------HHHHHHHHHHHHHHHTTTCH-----------------------------------HHHHHH
T ss_pred hCCCC--------------hHHHHHHHHHHHHHHHcCcH-----------------------------------HHHHHH
Confidence 111 01255666666666665554 889999
Q ss_pred HHHHHHhC-----CCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----C-cchHHHHHHHHHHHHHHhcCchH
Q psy6461 539 FEQCLEAC-----PPR-YAKTLYLLYAKLEEEHGLARHAMAVYERATGAV-----L-PEEMFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 539 ~~~al~~~-----p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~~~~~~~~~~~~~~ 606 (703)
|+++++.. +++ ....++..+|.++...|++++|+..|++++... + .......+......+...|++++
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998874 222 114689999999999999999999999999872 1 11234567777788888999999
Q ss_pred HHHHHHHHHHhCCC---------cchHHHHHH------HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 607 TRQIYERAIESLPE---------EPTRQMCLK------FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 607 A~~~~~~al~~~p~---------~~~~~~~~~------~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
|...|+++++..|+ ... .|.. .+......+.+.+|...++++... .+. ...+|..++....
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~la~~~~ 289 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKP--IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPT-VTTTLKNLGALYR 289 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CC--HHHHHHHHHHC-------CCSCCCC----------CHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHH--HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-Cch-HHHHHHHHHHHHH
Confidence 99999999986432 211 3333 333334456677788888888776 333 5888999999999
Q ss_pred HcCCHHHHHHHHHHHHHHH
Q psy6461 672 THGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 672 ~~g~~~~~~~~~~~~~~~~ 690 (703)
..|+.++|.+.++.+-.+.
T Consensus 290 ~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 290 RQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHh
Confidence 9999999999997666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-12 Score=129.85 Aligned_cols=295 Identities=9% Similarity=-0.008 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.+....+.++...|++++|...+++++...|........ ......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~l-------------------------------- 59 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI---VATSVL-------------------------------- 59 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH---HHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHH---HHHHHH--------------------------------
Confidence 567778889999999999999999999876643211000 000000
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDAR 412 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 412 (703)
..+....|++++|...+++++...+..........++..++.++...|++++|+
T Consensus 60 --------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 113 (373)
T 1hz4_A 60 --------------------------GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 113 (373)
T ss_dssp --------------------------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 001111288899999999998763321111112345677899999999999999
Q ss_pred HHHHHhhccCCCCc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH
Q psy6461 413 LIFDKATLVPYTKV----EDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA 488 (703)
Q Consensus 413 ~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (703)
..|++++...+... ......+..++.++...|++++|...+++++...+..... .....+..++
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~la 181 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------------QQLQCLAMLI 181 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG------------GGHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH------------HHHHHHHHHH
Confidence 99999988742110 1223667888999999999999999999999887753100 0134555666
Q ss_pred HHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH-----HHHHHHH
Q psy6461 489 DLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL-----LYAKLEE 563 (703)
Q Consensus 489 ~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~a~~~~ 563 (703)
.++...|++ ++|+..+++++...+.......|. ..+.++.
T Consensus 182 ~~~~~~g~~-----------------------------------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 182 QCSLARGDL-----------------------------------DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHTCH-----------------------------------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH-----------------------------------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 666666554 999999999988743211011222 3445577
Q ss_pred HcCChHHHHHHHHHHhhccCcch--HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHc
Q psy6461 564 EHGLARHAMAVYERATGAVLPEE--MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP----TRQMCLKFAEMETKL 637 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~ 637 (703)
..|++++|...+++++...|.+. ....+......+...|++++|...+++++...+... ...++..++.++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 89999999999999998776431 122445566677778999999999999988754321 123677788899999
Q ss_pred CCHHHHHHHHHHHhcccC
Q psy6461 638 GEIDRARAIYAHCSQICD 655 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~ 655 (703)
|+.++|+..|++++...+
T Consensus 307 g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999988754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=125.49 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=80.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHH
Q psy6461 398 FGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARV 477 (703)
Q Consensus 398 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 477 (703)
+|.++...|++++|+..|++++..+|.++ ..++.+|.++.+.|++++|+..|+++++.+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------------- 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------------- 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------
Confidence 34455556666677777777666655544 556666666666777777777777777666663
Q ss_pred HhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHH
Q psy6461 478 YKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLL 557 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 557 (703)
+..|..++.++...|++ ++|...|+++++.+|++ +.+|..
T Consensus 65 ---~~a~~~lg~~~~~~~~~-----------------------------------~~A~~~~~~al~~~p~~--~~~~~~ 104 (150)
T 4ga2_A 65 ---PKAHRFLGLLYELEENT-----------------------------------DKAVECYRRSVELNPTQ--KDLVLK 104 (150)
T ss_dssp ---HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred ---HHHHHHHHHHHHHcCch-----------------------------------HHHHHHHHHHHHhCCCC--HHHHHH
Confidence 56666666666655554 66666677777766666 456666
Q ss_pred HHHHHHHcCChHHHHHH-HHHHhhccCcc
Q psy6461 558 YAKLEEEHGLARHAMAV-YERATGAVLPE 585 (703)
Q Consensus 558 ~a~~~~~~g~~~~A~~~-~~~al~~~p~~ 585 (703)
+|.++...|++++|... ++++++..|++
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 66666666666554443 35666666655
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=152.32 Aligned_cols=174 Identities=14% Similarity=-0.042 Sum_probs=111.0
Q ss_pred HHcCChHHHHHHHHHhh--------ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 403 EVNDQLEDARLIFDKAT--------LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 403 ~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
...|++++|+..|++++ +.+|.+. .+|+.++..+.+.|++++|+..|+++++.+|++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------- 466 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV----ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR----------- 466 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-----------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch----hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-----------
Confidence 45666777777777776 6666665 666677777777777777777777777766663
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
...|+.++.++...|++ ++|...|+++++.+|++ ...
T Consensus 467 ------~~a~~~lg~~~~~~g~~-----------------------------------~~A~~~~~~al~l~P~~--~~~ 503 (681)
T 2pzi_A 467 ------WRLVWYRAVAELLTGDY-----------------------------------DSATKHFTEVLDTFPGE--LAP 503 (681)
T ss_dssp ------HHHHHHHHHHHHHHTCH-----------------------------------HHHHHHHHHHHHHSTTC--SHH
T ss_pred ------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCC--hHH
Confidence 56666666666655554 66777777777777766 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q psy6461 555 YLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEME 634 (703)
Q Consensus 555 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (703)
|..+|.++...|++++ +..|+++++.+|++. ..|......+...|++++|...|+++++..|++.. .+...+.++
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~~~~~~ 578 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVI--SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTT--ARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCchH--HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHH--HHHHHHHHH
Confidence 6677777767777776 677777777766653 34555555555666777777777777777666544 566666655
Q ss_pred HHcCC
Q psy6461 635 TKLGE 639 (703)
Q Consensus 635 ~~~g~ 639 (703)
...|+
T Consensus 579 ~~~~~ 583 (681)
T 2pzi_A 579 LSGRS 583 (681)
T ss_dssp C----
T ss_pred HccCC
Confidence 44443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=151.44 Aligned_cols=175 Identities=11% Similarity=-0.018 Sum_probs=155.7
Q ss_pred hcCCCcHHHHHHHHhhhcCCchhHHHHHHHHH--------HhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q psy6461 348 RQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAV--------KTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT 419 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~--------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 419 (703)
..+|.++.+++..+ +..|++++|++.|++++ .. . +....+|+.+|..+...|++++|+..|++++
T Consensus 388 ~~~p~~~~a~~~~a-~~~~~~~~A~~~~~~al~~~~~~~~~~-~-----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 460 (681)
T 2pzi_A 388 LVDPTDVAASVLQA-TVLSQPVQTLDSLRAARHGALDADGVD-F-----SESVELPLMEVRALLDLGDVAKATRKLDDLA 460 (681)
T ss_dssp CCCTTSTTHHHHHH-TTTCCHHHHHHHHHHHHTC-------C-C-----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc-ccccCHHHHHHHHHHhhhhcccccccc-c-----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45788887777665 44599999999999998 33 2 2467899999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhH
Q psy6461 420 LVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKA 499 (703)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (703)
+.+|.+. .+|+.+|.++...|++++|+..|+++++.+|++ ...|..++.++...|++
T Consensus 461 ~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----------------~~~~~~lg~~~~~~g~~-- 517 (681)
T 2pzi_A 461 ERVGWRW----RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-----------------LAPKLALAATAELAGNT-- 517 (681)
T ss_dssp HHHCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-----------------SHHHHHHHHHHHHHTCC--
T ss_pred ccCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHcCCh--
Confidence 9999997 999999999999999999999999999999985 78888888888887775
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q psy6461 500 YEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERAT 579 (703)
Q Consensus 500 ~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 579 (703)
++ ...|+++++.+|++ ..+|..+|.++...|++++|+..|++++
T Consensus 518 ---------------------------------~~-~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 518 ---------------------------------DE-HKFYQTVWSTNDGV--ISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp ---------------------------------CT-TCHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ---------------------------------HH-HHHHHHHHHhCCch--HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 88 99999999999999 6799999999999999999999999999
Q ss_pred hccCcchHH
Q psy6461 580 GAVLPEEMF 588 (703)
Q Consensus 580 ~~~p~~~~~ 588 (703)
+..|.+...
T Consensus 562 ~l~P~~~~a 570 (681)
T 2pzi_A 562 PTSRHFTTA 570 (681)
T ss_dssp TTSTTHHHH
T ss_pred ccCcccHHH
Confidence 999987443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=136.78 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=165.1
Q ss_pred CCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccC-----CCCcchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVP-----YTKVEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~ 438 (703)
|+++.|+..|++++....... ..+....++..+|.++...|++++|+..|++++... +.++ ....++..++.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~ 93 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNNLAV 93 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHH
Confidence 888999999999988632111 113467889999999999999999999999999873 2222 33478999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCC-----CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchH
Q psy6461 439 LELRAGQEEAALRLMARATATP-----ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIF 513 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~ 513 (703)
++...|++++|...|.+++... +++ +.....+..++.++...|++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~---------------- 143 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFH--------------PDVAKQLNNLALLCQNQGKA---------------- 143 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHTTTCH----------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCC--------------hHHHHHHHHHHHHHHHcCCH----------------
Confidence 9999999999999999999763 211 01255666666666666554
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 514 DIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--------CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 514 ~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
++|...|+++++. .|.. ..++..+|.++...|++++|...|+++++..+..
T Consensus 144 -------------------~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 144 -------------------EEVEYYYRRALEIYATRLGPDDPNV--AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 4444 5689999999999999999999999999874321
Q ss_pred h-------HHHHHHHHHHHHHHhcC------chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 586 E-------MFEMFNIYIKKAAEIYG------IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQ 652 (703)
Q Consensus 586 ~-------~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~ 652 (703)
. ...+|..........+. +..+...++......|+ ....+..++.++...|++++|...|++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT--VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 11233333333322222 22222223222222233 234788899999999999999999999987
Q ss_pred c
Q psy6461 653 I 653 (703)
Q Consensus 653 ~ 653 (703)
+
T Consensus 281 ~ 281 (283)
T 3edt_B 281 N 281 (283)
T ss_dssp T
T ss_pred h
Confidence 6
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-13 Score=125.14 Aligned_cols=169 Identities=11% Similarity=0.062 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHH----------------HHHHHHhc
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSL----------------YADLEESF 494 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 494 (703)
..++..+..++..|++++|+..|++++..+|++ +..|.. ++.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~- 66 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-----------------TEMYYWTNVDKNSEISSKLATELALAYKK- 66 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----------------HHHHHHHHSCTTSHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------hHHHHHhhhcchhhhhHHHHHHHHHHHHH-
Confidence 567788888899999999999999999999974 555555 3333333
Q ss_pred CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHH
Q psy6461 495 GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAV 574 (703)
Q Consensus 495 ~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~ 574 (703)
.|++++|...|+++++.+|++ +.+|..+|.++...|++++|+..
T Consensus 67 ----------------------------------~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 110 (208)
T 3urz_A 67 ----------------------------------NRNYDKAYLFYKELLQKAPNN--VDCLEACAEMQVCRGQEKDALRM 110 (208)
T ss_dssp ----------------------------------TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 455699999999999999999 67999999999999999999999
Q ss_pred HHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 575 YERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 575 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
|+++++..|++.......+.+.+....+....+...|.+++...|. ...+...+......|++++|+..|++|+++.
T Consensus 111 ~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 111 YEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---QYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999865544444444443344556677777777643332 2245666777778999999999999999995
Q ss_pred CC
Q psy6461 655 DP 656 (703)
Q Consensus 655 ~~ 656 (703)
|.
T Consensus 188 P~ 189 (208)
T 3urz_A 188 PS 189 (208)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-13 Score=121.68 Aligned_cols=166 Identities=16% Similarity=0.008 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+.++..|..+...|++++|+..|+++++.+|+++ .+|..++.++.+.|++++|+..|++++...| +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--------- 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQ-D--------- 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C---------
Confidence 3578889999999999999999999999999998 9999999999999999999999999999988 5
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
+..+...+.+.... . +...+|...|+++++.+|++ +
T Consensus 73 --------~~~~~~~~~~~~~~-------------------------------~---~~~~~a~~~~~~al~~~P~~--~ 108 (176)
T 2r5s_A 73 --------NSYKSLIAKLELHQ-------------------------------Q---AAESPELKRLEQELAANPDN--F 108 (176)
T ss_dssp --------HHHHHHHHHHHHHH-------------------------------H---HTSCHHHHHHHHHHHHSTTC--H
T ss_pred --------hHHHHHHHHHHHHh-------------------------------h---cccchHHHHHHHHHHhCCCC--H
Confidence 33333322221110 0 01145899999999999998 6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (703)
.++..+|.++...|++++|+..|+++++..|.......+...+..+...|+.++|...|+++|.
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 7999999999999999999999999999988653333555555566666677777777766664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=122.51 Aligned_cols=190 Identities=10% Similarity=0.039 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM 105 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 105 (703)
+...+...+.... .|++++|...|+++++.+|.++ ..|..++...... |++++|...|+++++..|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN--------ADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHCcCC
Confidence 4567777777666 8999999999999999999874 6777777766554 88999999999999999988
Q ss_pred HH---HHHHHHHHHHh------------------ccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 106 PR---IWLDYGRFLMD------------------QHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 106 ~~---~~~~~~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
+. ++...+.++.. .|++++|...|+++++..|.+ ..++.....+....+....
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~--~~a~~a~~~l~~~~~~~~~---- 148 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS--QYTTDATKRLVFLKDRLAK---- 148 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC--TTHHHHHHHHHHHHHHHHH----
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC--hhHHHHHHHHHHHHHHHHH----
Confidence 75 67777776654 467778888888888877743 4444332222111000000
Q ss_pred HHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHh
Q psy6461 165 FRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGL 244 (703)
Q Consensus 165 ~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (703)
.......++...|++++|+..|++++.. +|+..
T Consensus 149 ----------~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------------~p~~~------------- 181 (225)
T 2yhc_A 149 ----------YEYSVAEYYTERGAWVAVVNRVEGMLRD------------------------YPDTQ------------- 181 (225)
T ss_dssp ----------HHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------STTSH-------------
T ss_pred ----------HHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------CcCCC-------------
Confidence 0011234566788888888888777631 22210
Q ss_pred hhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCc
Q psy6461 245 RRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 285 (703)
...+++..+|..+.+.|++++|+..++++....|+.
T Consensus 182 -----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 182 -----ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 113679999999999999999999999988887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-11 Score=125.90 Aligned_cols=247 Identities=13% Similarity=0.047 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHH
Q psy6461 254 LWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLED 333 (703)
Q Consensus 254 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (703)
.++..|..+...|++++|...|++++...+...+-..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------------------- 139 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE------------------------------------------- 139 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-------------------------------------------
Confidence 5677899999999999999999999986543222100
Q ss_pred HHhhhhhhhhhhhhhcCCCcHHHHHHHHhh--hcCCchhHHHHHHHHHHhcCCCcc-CCchhHHHHHHHHHHHHcCChHH
Q psy6461 334 LMERRLLLLNSVLLRQNPHNVLEWHKRVRL--FDGKPLDIIRTYTEAVKTVDPKLA-VGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 334 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
....+..++.+ ..|+++.|+..+++++...+.... ......++..+|.++...|++++
T Consensus 140 -------------------~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 200 (378)
T 3q15_A 140 -------------------KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200 (378)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHH
Confidence 00111111111 128889999999999887433221 12346788899999999999999
Q ss_pred HHHHHHHhhccCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----CCCCCcccccchhhHHHHHHhhHHH
Q psy6461 411 ARLIFDKATLVPY--TKVEDLATVWCEWAELELRAGQEEAALRLMARATA-----TPARPVAYHDEAETVQARVYKSIKL 483 (703)
Q Consensus 411 A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
|...|++++...+ .+......++..+|.++...|++++|+..|++++. .+|. ....
T Consensus 201 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~ 263 (378)
T 3q15_A 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-----------------LPKV 263 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-----------------HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-----------------HHHH
Confidence 9999999998743 22223356889999999999999999999999998 5554 2566
Q ss_pred HHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc---hHHHHHHHHH
Q psy6461 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY---AKTLYLLYAK 560 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~a~ 560 (703)
+..++.++...|+. ++|...++++++..+... ....+..++.
T Consensus 264 ~~~la~~~~~~g~~-----------------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 264 LFGLSWTLCKAGQT-----------------------------------QKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777766664 899999999999855321 1234556666
Q ss_pred HHHHcCC---hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q psy6461 561 LEEEHGL---ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES 617 (703)
Q Consensus 561 ~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (703)
++...|+ +.+|+..+++. ...| ....++...+..+...|++++|...|+++++.
T Consensus 309 ly~~~~~~~~~~~al~~~~~~-~~~~--~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFEKK-NLHA--YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT-TCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHhC-CChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777 77777777762 1122 22345556677777889999999999999875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=133.82 Aligned_cols=390 Identities=10% Similarity=0.080 Sum_probs=171.6
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.|++++|...+++. +.+.+|..+++..... |++++|...|.++ +++..|...+..+...|++
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~--------g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQK--------GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHc--------CCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCH
Confidence 57788888888888 2345888887766543 7788888888764 4666788888888888888
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH---HHHHHhcCCHHHHHHHHHHh
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY---IEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~A~~~~~~~ 199 (703)
++|++.++.+++..| .+.+...++..+.+.|++.++.++++. |+.. .| ...+...|.+++|+..|..+
T Consensus 78 EeAi~yl~~ark~~~---~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~-a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKKAR---ESYVETELIFALAKTNRLAELEEFING-----PNNA-HIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHhCc---cchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 888888888887544 245566677777778888877777642 4332 33 34456788888888888755
Q ss_pred hcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHH
Q psy6461 200 VNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAI 279 (703)
Q Consensus 200 ~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 279 (703)
..|..+|+.+.+.|+++.|.+.|+++.
T Consensus 149 -----------------------------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 149 -----------------------------------------------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -----------------------------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred -----------------------------------------------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 258888888889999999999888872
Q ss_pred hhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHH
Q psy6461 280 QTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHK 359 (703)
Q Consensus 280 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 359 (703)
.+ ..|...... +.
T Consensus 176 --~~------~~Wk~v~~a-------------------------------Cv---------------------------- 188 (449)
T 1b89_A 176 --ST------RTWKEVCFA-------------------------------CV---------------------------- 188 (449)
T ss_dssp --CH------HHHHHHHHH-------------------------------HH----------------------------
T ss_pred --Cc------hhHHHHHHH-------------------------------HH----------------------------
Confidence 11 122211100 00
Q ss_pred HHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHH
Q psy6461 360 RVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAEL 439 (703)
Q Consensus 360 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 439 (703)
..|+++.|..+... +. ..++-...++.+|.+.|.+++|+.+++.++..++.+. .+|..++-+
T Consensus 189 ----~~~ef~lA~~~~l~-L~---------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~----~~ftel~il 250 (449)
T 1b89_A 189 ----DGKEFRLAQMCGLH-IV---------VHADELEELINYYQDRGYFEELITMLEAALGLERAHM----GMFTELAIL 250 (449)
T ss_dssp ----HTTCHHHHHHTTTT-TT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH----HHHHHHHHH
T ss_pred ----HcCcHHHHHHHHHH-HH---------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH----HHHHHHHHH
Confidence 01555555443332 11 1222344577889999999999999999999998887 889999888
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHH
Q psy6461 440 ELRA--GQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWN 517 (703)
Q Consensus 440 ~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~ 517 (703)
+.+. ++..+.++.|...+.++|- -|.-....+|..++-++...+++ +.|+..+
T Consensus 251 ~~ky~p~k~~ehl~~~~~~ini~k~------------~~~~~~~~~w~e~~~ly~~~~e~---d~A~~tm---------- 305 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRVNIPKV------------LRAAEQAHLWAELVFLYDKYEEY---DNAIITM---------- 305 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTSCHHHH------------HHHHHTTTCHHHHHHHHHHTTCH---HHHHHHH----------
T ss_pred HHhcCHHHHHHHHHHHHHHhcCcHH------------HHHHHHHHHHHHHHHHHHhhchH---HHHHHHH----------
Confidence 8664 4566666676665555540 00001257888888888887775 4444322
Q ss_pred HHHHHHHHHhCCCChhH--HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 518 TYLTKFLSRYGGTKLER--ARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 518 ~y~~~~~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
.. .++. --..|...+....+ .+++...+.++.. ....+..-+..++...-++++ -+
T Consensus 306 ------~~-----h~~~a~~~~~f~~~~~kv~n---~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~~r------~v 363 (449)
T 1b89_A 306 ------MN-----HPTDAWKEGQFKDIITKVAN---VELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTR------AV 363 (449)
T ss_dssp ------HH-----STTTTCCHHHHHHHHHHCSS---THHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHH------HH
T ss_pred ------Hh-----CChhhhhhHHHHHHHhchhH---HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCcHH------HH
Confidence 00 0011 12455555554443 4688888888773 333445555555533333322 13
Q ss_pred HHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 596 KKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYA 648 (703)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 648 (703)
.+..+.++++-++..++.+-.. ++.. +-..+-.++....+++.-|...+
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~--n~~~--vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNH--NNKS--VNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTT--CCHH--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHh--hHHH--HHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445567777777777544432 2222 66677777888888776665544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=129.32 Aligned_cols=170 Identities=9% Similarity=-0.042 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|.+.+.+...+.... .|++++|...|+++++.+|++...|..++..+... |++++|...|++++...|++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--------g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL--------NRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHTTSCGGGCSHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC--------CCHHHHHHHHHhCchhhcchH
Confidence 555555555554444 55555555555555555555555555555544432 455555555555555555433
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSI 186 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 186 (703)
..+...+..+...++.+.|...|++++...| .+..++..++..+...|++++|+..|+++++.+|++.
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~---------- 253 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA---------- 253 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----------
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----------
Confidence 3333333334444455555555555555555 2344555555555555555555555555555554431
Q ss_pred CCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhC
Q psy6461 187 ERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSG 266 (703)
Q Consensus 187 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (703)
...++..++.++...|
T Consensus 254 ----------------------------------------------------------------~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 254 ----------------------------------------------------------------DGQTRXTFQEILAALG 269 (287)
T ss_dssp ----------------------------------------------------------------GGHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------------------------cchHHHHHHHHHHHcC
Confidence 1357888888888899
Q ss_pred chHHHHHHHHHHHhh
Q psy6461 267 LFERARDIYEEAIQT 281 (703)
Q Consensus 267 ~~~~A~~~~~~~l~~ 281 (703)
+.++|...|++++..
T Consensus 270 ~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 270 TGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 999999999887753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-13 Score=130.62 Aligned_cols=164 Identities=15% Similarity=0.285 Sum_probs=127.0
Q ss_pred cCchhHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhc--------CCCH
Q psy6461 43 NAPKAIINTIYERSLKE--------LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFM--------HKMP 106 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~--------~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 106 (703)
.|++++|...|+++++. .|.....|..++..+... |++++|...|++++... |...
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ--------NKYKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 57888888888888884 366778888888776654 89999999999999884 5667
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhC-----Cc-ccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRAL-----PI-TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
.+|..++.++...|++++|...|++++... |. .....++..++.++...|++++|+..|+++++...
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 158 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA------- 158 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 899999999999999999999999999972 11 13466777788888888888888888888776410
Q ss_pred HHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHH
Q psy6461 181 EYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLAD 260 (703)
Q Consensus 181 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (703)
... ++ ..| ....++..+|.
T Consensus 159 -----------------~~~---------~~--------------~~~---------------------~~~~~~~~la~ 177 (283)
T 3edt_B 159 -----------------TRL---------GP--------------DDP---------------------NVAKTKNNLAS 177 (283)
T ss_dssp -----------------HHS---------CT--------------TCH---------------------HHHHHHHHHHH
T ss_pred -----------------Hhc---------CC--------------CCH---------------------HHHHHHHHHHH
Confidence 000 00 000 12357889999
Q ss_pred HHHHhCchHHHHHHHHHHHhhc
Q psy6461 261 YYIRSGLFERARDIYEEAIQTV 282 (703)
Q Consensus 261 ~~~~~~~~~~A~~~~~~~l~~~ 282 (703)
++...|++++|...|++++...
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-13 Score=113.28 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=92.8
Q ss_pred HHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHH
Q psy6461 22 EEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLV 100 (703)
Q Consensus 22 ~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 100 (703)
++...||...+.|...+..+. .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--------MEFQRALDDCDTCIR 75 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--------ccHHHHHHHHHHHHH
Confidence 344568888888888887776 88888888888888888888888888887776654 778888888888888
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
.+|+++.+|..+|.++...|++++|...|+++++.+|. +..++..+..+
T Consensus 76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~a~~~l~~~ 124 (126)
T 4gco_A 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS--NEEAREGVRNC 124 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHHh
Confidence 88888888888888888888888888888888888884 45665555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=119.19 Aligned_cols=111 Identities=3% Similarity=-0.044 Sum_probs=58.4
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
.|++++..+|.+.+.|..++..+. .|++++|...|+++++.+|.++..|..++..+... |++++|...|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--------g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--------EQFQQAADLYAV 95 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------ccHHHHHHHHHH
Confidence 344445555555555555554444 55555555555555555555555555555444332 455555555555
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
+++.+|+++.+|..+|.++...|++++|...|+++++..|
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555555555555555555555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-12 Score=124.26 Aligned_cols=260 Identities=10% Similarity=0.042 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 47 AIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 47 ~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
.+|.+++.+|-+..+.+...| .+... + ..+++++|...|+++ +.++...|++++|.
T Consensus 2 ~~a~~~~~~a~k~~~~~~~~~-~~~~~-------~--~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVPSSGFM-KLFSG-------S--DSYKFEEAADLCVQA--------------ATIYRLRKELNLAG 57 (292)
T ss_dssp CCHHHHHHHHHHHSSCCCTHH-HHHSC-------C--SHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHH
T ss_pred CcHHHHHHHHHHHhCcCCCcc-hhcCC-------C--CCccHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 457788888888888776666 44210 0 013588999999988 45677789999999
Q ss_pred HHHHHHHHhCCcc----cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q psy6461 127 HVFDRALRALPIT----QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNK 202 (703)
Q Consensus 127 ~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 202 (703)
..|++++...+.. .....|..++.++...|++++|+..|++++...|.. |+..
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-----------g~~~------------ 114 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-----------GQFR------------ 114 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHH------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-----------CCHH------------
Confidence 9999999875421 124567777888888888888888888887654332 1110
Q ss_pred cccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHh-CchHHHHHHHHHHHhh
Q psy6461 203 ESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRS-GLFERARDIYEEAIQT 281 (703)
Q Consensus 203 ~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~l~~ 281 (703)
....++..+|.+|... |++++|+..|++++..
T Consensus 115 -----------------------------------------------~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 115 -----------------------------------------------RGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 0124688889999996 9999999999999987
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHH
Q psy6461 282 VTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRV 361 (703)
Q Consensus 282 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 361 (703)
.|...+..... ..+..++
T Consensus 148 ~~~~~~~~~~~--------------------------------------------------------------~~~~~lg 165 (292)
T 1qqe_A 148 YAQDQSVALSN--------------------------------------------------------------KCFIKCA 165 (292)
T ss_dssp HHHTTCHHHHH--------------------------------------------------------------HHHHHHH
T ss_pred HHhCCChHHHH--------------------------------------------------------------HHHHHHH
Confidence 65322110000 0011111
Q ss_pred hh--hcCCchhHHHHHHHHHHhcCCCccC-CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH-HHHHHHHH
Q psy6461 362 RL--FDGKPLDIIRTYTEAVKTVDPKLAV-GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL-ATVWCEWA 437 (703)
Q Consensus 362 ~~--~~~~~~~a~~~~~~a~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~ 437 (703)
.+ ..|++++|+..|++++...+..... .....++..+|.++...|++++|+..|+++++++|...... ...+..++
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 11 1288999999999999874322111 12234788999999999999999999999999988765211 12344455
Q ss_pred HHHH--HcCCHHHHHHHHHHHhcCCCC
Q psy6461 438 ELEL--RAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 438 ~~~~--~~~~~~~A~~~~~~a~~~~p~ 462 (703)
..+. ..+++++|+..|++++..+|.
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 5443 356799999999999999886
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=127.29 Aligned_cols=169 Identities=11% Similarity=-0.054 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...+.++..|..+...|++++|+..|++++..+|.++ .++..++.++.+.|++++|+..+++++...|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------ 184 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------ 184 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------
Confidence 3567889999999999999999999999999999998 899999999999999999999999999999862
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...+......+...+ +.++|...|++++..+|++
T Consensus 185 -----------~~~~~~~~~~l~~~~-----------------------------------~~~~a~~~l~~al~~~P~~ 218 (287)
T 3qou_A 185 -----------RYQGLVAQIELLXQA-----------------------------------ADTPEIQQLQQQVAENPED 218 (287)
T ss_dssp -----------HHHHHHHHHHHHHHH-----------------------------------TSCHHHHHHHHHHHHCTTC
T ss_pred -----------HHHHHHHHHHHHhhc-----------------------------------ccCccHHHHHHHHhcCCcc
Confidence 222222221122222 2378999999999999999
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIE 616 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (703)
+.++..+|.++...|++++|+..|+++++..|++.....+...+..+...|+.+.|...|++++.
T Consensus 219 --~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 219 --AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 67999999999999999999999999999998764445566666666666777777777777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-11 Score=119.75 Aligned_cols=222 Identities=10% Similarity=0.090 Sum_probs=183.9
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG--QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIK 482 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 482 (703)
....++|+..++++|.++|.+. .+|+.-+.++...| .+++++..+++++..+|++ ..
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~----taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----------------y~ 104 (306)
T 3dra_A 46 EEYSERALHITELGINELASHY----TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----------------YQ 104 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----------------CH
T ss_pred CCCCHHHHHHHHHHHHHCcHHH----HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----------------HH
Confidence 3444799999999999999997 99999999998888 9999999999999999995 78
Q ss_pred HHHHHHHHH----HhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 483 LWSLYADLE----ESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLY 558 (703)
Q Consensus 483 ~~~~~~~~~----~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 558 (703)
+|.....+. ...+. .++++++...++++++.+|.+ ..+|..-
T Consensus 105 aW~~R~~iL~~~~~~l~~--------------------------------~~~~~~EL~~~~~~l~~~pkn--y~aW~~R 150 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNN--------------------------------DFDPYREFDILEAMLSSDPKN--HHVWSYR 150 (306)
T ss_dssp HHHHHHHHHHHHHHHTTT--------------------------------CCCTHHHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--------------------------------cCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 998887776 32210 134689999999999999999 5799999
Q ss_pred HHHHHHcCChH--HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC------chHHHHHHHHHHHhCCCcchHHHHHHH
Q psy6461 559 AKLEEEHGLAR--HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG------IPKTRQIYERAIESLPEEPTRQMCLKF 630 (703)
Q Consensus 559 a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (703)
+.+....|.++ +++..++++++.+|.+...+.+..++... .+. ++++.+.+.+++..+|++.. +|...
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~--l~~~~~~~~~~eEl~~~~~aI~~~p~n~S--aW~y~ 226 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS--KKHLATDNTIDEELNYVKDKIVKCPQNPS--TWNYL 226 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS--SGGGCCHHHHHHHHHHHHHHHHHCSSCHH--HHHHH
T ss_pred HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccchhhhHHHHHHHHHHHHHhCCCCcc--HHHHH
Confidence 99999999998 99999999999999996655555554433 344 88999999999999999987 89999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhccc--CCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 631 AEMETKLGE-IDRARAIYAHCSQIC--DPRVTAGFWAAWKSFEITHGNEDTMREMLRIK 686 (703)
Q Consensus 631 a~~~~~~g~-~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 686 (703)
..++.+.|+ .+.+..+.+++++.. .+. ....+...++.....|+.++|.++++..
T Consensus 227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 227 LGIHERFDRSITQLEEFSLQFVDLEKDQVT-SSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTEEGGGTEES-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999998 444667888877763 122 5788999999999999999888877543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-12 Score=128.54 Aligned_cols=209 Identities=11% Similarity=0.078 Sum_probs=152.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhccCCC--CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 399 GKFYEVNDQLEDARLIFDKATLVPYT--KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 399 a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
+.++...|++++|...|++++.+.+. ++......|..++.++...|++++|+..|++|+...|......
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~--------- 114 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR--------- 114 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH---------
Confidence 45667799999999999999987432 2223357899999999999999999999999998765421000
Q ss_pred HHhhHHHHHHHHHHHHhc-CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----h
Q psy6461 477 VYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY----A 551 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~-~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~ 551 (703)
.....+...+.++... |+ +++|...|+++++..|... .
T Consensus 115 --~~a~~~~~lg~~~~~~lg~-----------------------------------~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 115 --RGANFKFELGEILENDLHD-----------------------------------YAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----------------------------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHHHHHHHhhcC-----------------------------------HHHHHHHHHHHHHHHHhCCChHHH
Confidence 0134566666666653 55 4999999999999887541 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH-----HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH--
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF-----EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR-- 624 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-- 624 (703)
..++..+|.++...|++++|+..|++++...|.+... ..+...+......|++++|+..|+++++..|+.+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3578999999999999999999999999998875321 245555666667899999999999999999976532
Q ss_pred -HHHHHHHHHHH--HcCCHHHHHHHHHHHhcc
Q psy6461 625 -QMCLKFAEMET--KLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 625 -~~~~~~a~~~~--~~g~~~~A~~~~~~a~~~ 653 (703)
..+..++..+. ..+++++|+..|++++.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 13333444333 356799999999998887
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-12 Score=119.60 Aligned_cols=212 Identities=7% Similarity=-0.120 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
.+..++..|..+...|++++|+..|+++++..|.++ .....++.+|.++.+.|++++|+..|+++++..|++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~----- 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN----- 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-----
Confidence 356788889999999999999999999999988764 22368899999999999999999999999999998521
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
....++..+.++...+.. .++ .|..........++.++|...|+++++..|++.
T Consensus 77 ---------~~~a~~~~g~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 77 ---------IDYVMYMRGLTNMALDDS-ALQ----------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp ---------HHHHHHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred ---------HHHHHHHHHHHHHhhhhh-hhh----------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 123555555555443211 000 000000111124567999999999999999983
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch-HHHHHH
Q psy6461 551 AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT-RQMCLK 629 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~ 629 (703)
.++.....+....+.. .......+.++.+.|++++|...|+++++..|+++. ..++..
T Consensus 131 --~a~~a~~~l~~~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 131 --YTTDATKRLVFLKDRL-------------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp --THHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 2332222111110000 011123345556688999999999999999998873 358899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
.+.++.+.|++++|+..++++....|
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 99999999999999999998887744
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=113.05 Aligned_cols=115 Identities=6% Similarity=-0.028 Sum_probs=103.8
Q ss_pred CchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q psy6461 16 EDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNT 94 (703)
Q Consensus 16 ~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~ 94 (703)
....|++++..+|.+...|..++.... .|++++|...|+++++.+|.++..|..++..+... |++++|...
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~ 77 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM--------GQYDLAIHS 77 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH--------hhHHHHHHH
Confidence 356789999999999999999998887 99999999999999999999999999888877654 889999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
|+++++.+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999884
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-13 Score=116.69 Aligned_cols=116 Identities=8% Similarity=-0.040 Sum_probs=108.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHH
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
..|+++++.+|++...|..++..+... |++++|...|++++..+|+++.+|..+|.++...|++++|...|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNK--------GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 467788899999999999999887654 899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 131 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
++++.+| .++.+|..++.++...|++++|+..|+++++..|++.
T Consensus 95 ~al~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 95 VAFALGK--NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999 4689999999999999999999999999999999874
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=109.48 Aligned_cols=117 Identities=11% Similarity=0.013 Sum_probs=105.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 55 RSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 55 ~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
|+..++|+....|...+..+... |++++|...|+++++.+|.++.+|..+|.++...|++++|...|+++++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKK--------GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 45568899999998888877664 8999999999999999999999999999999999999999999999999
Q ss_pred hCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 135 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
.+| .+..+|..++.++...|++++|+..|+++++.+|++.+++..
T Consensus 76 ~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 76 LDS--KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhh--hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 999 568899999999999999999999999999999999865543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-12 Score=138.49 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=134.1
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHH
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDV 91 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A 91 (703)
.++....|+++++.+|.+...|..++..+. .|++++|...|+++++.+|++...|..++..+... |++++|
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A 76 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ--------QRHAEA 76 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT--------TCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHH
Confidence 445567899999999999999999999888 99999999999999999999999999999887764 899999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc---CChHHHHHHHHHH
Q psy6461 92 NNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH---AVPETAVRVFRRY 168 (703)
Q Consensus 92 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~ 168 (703)
...|+++++.+|+++.+|..++.++...|++++|...|+++++..| .+..+|..++.++... |+.++|...|+++
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 4578889999999999 9999999999999
Q ss_pred HhhCCCCHHHHHHHH
Q psy6461 169 LKLFPEDAEDYIEYL 183 (703)
Q Consensus 169 l~~~p~~~~~~~~~~ 183 (703)
++.+|.+...+..+.
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999876554333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-11 Score=104.99 Aligned_cols=134 Identities=17% Similarity=0.296 Sum_probs=122.5
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
++|..++..+. .|++++|...|+++++..|.+...|..++...... |++++|...|++++...|.++.+|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHCCCchHHHH
Confidence 56788888777 89999999999999999999999999988876654 8899999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
.++.++...|++++|...|++++...|. ...+|..++.++...|++++|...|++++..+|.+
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999994 57888899999999999999999999999998864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=112.20 Aligned_cols=113 Identities=7% Similarity=-0.060 Sum_probs=94.3
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
..|++++..+|.+...|..++.... .|++++|...|+++++.+|.++..|..++..+... |++++|...|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--------GLYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--------hhHHHHHHHHH
Confidence 4577788888888888888888777 88899999999999999999888888888776654 78888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 97 RSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 97 ~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+++..+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999888988888888888888889999999999998888884
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=134.37 Aligned_cols=156 Identities=9% Similarity=0.036 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+.++|+..|++++... | ....+|..+|..+...|++++|+..|+++++.+|.+. ..|..++.++...|+
T Consensus 3 g~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-P-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQR 72 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCC
Confidence 45566666666665542 2 2456666666666666666666666666666666655 566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|...|+++++.+|++ ...|..++.++...|++
T Consensus 73 ~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~---------------------------- 107 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEH-----------------PGIALWLGHALEDAGQA---------------------------- 107 (568)
T ss_dssp HHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCH----------------------------
T ss_pred HHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHcCCH----------------------------
Confidence 666666666666666653 55566666555555443
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---CChHHHHHHHHHHhhccCcc
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH---GLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~ 585 (703)
++|.+.|+++++.+|++ ..++..++.++... |++++|...|+++++..|.+
T Consensus 108 -------~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 108 -------EAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp -------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred -------HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 66666666666666665 45666666666666 66666666666666666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=113.18 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHH
Q psy6461 49 INTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHV 128 (703)
Q Consensus 49 a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 128 (703)
+-..|+++++.+|.+...|..++...... |++++|...|++++..+|+++.+|..++.++...|++++|...
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQS--------GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34578999999999999999998887664 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 129 FDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 129 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
|++++...| .++.+|..++.++...|++++|+..|+++++.+|+++.
T Consensus 78 ~~~al~l~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 78 YSYGAVMDI--XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999 45888999999999999999999999999999988753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-10 Score=109.31 Aligned_cols=233 Identities=11% Similarity=0.086 Sum_probs=176.2
Q ss_pred CCc-hhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHhhccCCCCcchHHHHHH
Q psy6461 366 GKP-LDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQ----------LEDARLIFDKATLVPYTKVEDLATVWC 434 (703)
Q Consensus 366 ~~~-~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~ 434 (703)
|.+ ++|++.++.++... | ....+|...+.++...+. ++++...++.++..+|++. .+|.
T Consensus 43 ~e~s~eaL~~t~~~L~~n-P-----~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~aW~ 112 (331)
T 3dss_A 43 GELDESVLELTSQILGAN-P-----DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWH 112 (331)
T ss_dssp TCCSHHHHHHHHHHHTTC-T-----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred CCCCHHHHHHHHHHHHHC-c-----hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HHHH
Confidence 443 47888888888763 3 356788888888775554 6889999999999999997 9999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 435 EWAELELRAG--QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 435 ~~~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
.-+.+....+ .+++++..++++++.+|++ ...|....-+....|..
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-----------------y~AW~~R~~vl~~l~~~--------------- 160 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERN-----------------FHCWDYRRFVAAQAAVA--------------- 160 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHTTCC---------------
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhCcC---------------
Confidence 9988888877 4899999999999999985 78888877666655441
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc--------------CChHHHHHHHHHH
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH--------------GLARHAMAVYERA 578 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~--------------g~~~~A~~~~~~a 578 (703)
.+++.+.++++++.+|.+ ..+|...+.+.... +.+++++..+.++
T Consensus 161 -------------------~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a 219 (331)
T 3dss_A 161 -------------------PAEELAFTDSLITRNFSN--YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 219 (331)
T ss_dssp -------------------HHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH
Confidence 378999999999999999 45898888887766 4578999999999
Q ss_pred hhccCcchHHHHHHHHHHHHH---------HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHH---HcCCHHHHHHH
Q psy6461 579 TGAVLPEEMFEMFNIYIKKAA---------EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMET---KLGEIDRARAI 646 (703)
Q Consensus 579 l~~~p~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~---~~g~~~~A~~~ 646 (703)
+...|++.+.+.|..++.... ..+-++++.+.+.++++..|++.- .+...+.+.. ..|..++++.+
T Consensus 220 i~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w--~l~~~~~~~~~~~~~~~~~~~~~~ 297 (331)
T 3dss_A 220 FFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW--CLLTIILLMRALDPLLYEKETLQY 297 (331)
T ss_dssp HHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch--HHHHHHHHHHhhcccccHHHHHHH
Confidence 999999977666554443221 013467899999999999998732 3334443332 35778899999
Q ss_pred HHHHhcccCCCCChHhHHH
Q psy6461 647 YAHCSQICDPRVTAGFWAA 665 (703)
Q Consensus 647 ~~~a~~~~~~~~~~~~~~~ 665 (703)
+.+.+++ ||. ....|..
T Consensus 298 l~~l~~~-Dp~-r~~~y~d 314 (331)
T 3dss_A 298 FSTLKAV-DPM-RAAYLDD 314 (331)
T ss_dssp HHHHHHH-CGG-GHHHHHH
T ss_pred HHHHHHh-Ccc-hhhHHHH
Confidence 9999998 454 2444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=118.85 Aligned_cols=219 Identities=12% Similarity=0.002 Sum_probs=167.8
Q ss_pred HcCChHHHHHHHHHhhccCCCCcchHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc-hhh---
Q psy6461 404 VNDQLEDARLIFDKATLVPYTKVEDLATVWCEW-------AELELRAGQEEAALRLMARATATPARPVAYHDE-AET--- 472 (703)
Q Consensus 404 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-~~~--- 472 (703)
..++...|+..|.+++..+|..+ ..|+.+ +.++.+.++..++...+.+++++.|+.+..... +..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~----Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC----DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhh----HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 47899999999999999999998 999999 788888888899999999999999987643322 110
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
++.++..-..++..|+.++...|++ ++|+++|+.++...|++ .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y-----------------------------------~eA~~~l~~~~~~~p~~--~ 136 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNY-----------------------------------ADAMEALEAAPVAGSEH--L 136 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCH-----------------------------------HHHHHHHTSSCCTTCHH--H
T ss_pred cccccCCHhHHHHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHhcCCch--H
Confidence 1111111256677777777666654 99999999999888887 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC--CCcchHHHHHHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL--PEEPTRQMCLKF 630 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 630 (703)
.+...+.++.+.|++++|+..|+++....++.....++......+..+|++++|...|++++... |.. ....++..
T Consensus 137 -~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~ 214 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYL 214 (282)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHH
Confidence 78888889999999999999999887654322112345555666777899999999999998543 331 23488999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHH
Q psy6461 631 AEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKS 668 (703)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 668 (703)
+.++.++|+.++|+.+|++++... |+ ...+..+..
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~-P~--~~~~~aL~~ 249 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTH-PE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-CC--HHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-Cc--HHHHHHHhC
Confidence 999999999999999999999984 44 666665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-10 Score=113.17 Aligned_cols=244 Identities=12% Similarity=0.075 Sum_probs=178.9
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHc-
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRA- 443 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~- 443 (703)
+..++|++.+++++... | ....+|...+.++...| .+++++..+++++..+|++. .+|..-..+..+.
T Consensus 68 e~se~AL~lt~~~L~~n-P-----~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-P-----AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRLLLLDRIS 137 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhC-c-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhc
Confidence 44568999999999874 3 35789999999999888 59999999999999999997 9999999888776
Q ss_pred C-CHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHH
Q psy6461 444 G-QEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTK 522 (703)
Q Consensus 444 ~-~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~ 522 (703)
+ ++++++..+++++..+|++ ...|....-+....|.. + +....
T Consensus 138 ~~~~~~EL~~~~k~L~~dpkN-----------------y~AW~~R~wvl~~l~~~---~--------~~~~~-------- 181 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPKN-----------------YHTWAYLHWLYSHFSTL---G--------RISEA-------- 181 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTTC-----------------HHHHHHHHHHHHHHHHT---T--------CCCHH--------
T ss_pred CCChHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHhccc---c--------ccchh--------
Confidence 7 8899999999999999985 78888877766654433 0 00000
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHhhccCcchHHHHHHHHH
Q psy6461 523 FLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL-------ARHAMAVYERATGAVLPEEMFEMFNIYI 595 (703)
Q Consensus 523 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 595 (703)
-..++.+.++++++.+|.+ ..+|...+.+....|. +++++..+++++...|.+.+.+.+...+
T Consensus 182 --------~~~eELe~~~k~I~~dp~N--~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 182 --------QWGSELDWCNEMLRVDGRN--NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF 251 (349)
T ss_dssp --------HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0248999999999999999 5699999999888886 6899999999999999996655554333
Q ss_pred HHHHHhcCch-----------------HHHHHHHHHHHhCCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6461 596 KKAAEIYGIP-----------------KTRQIYERAIESLPE-------EPTRQMCLKFAEMETKLGEIDRARAIYAHCS 651 (703)
Q Consensus 596 ~~~~~~~~~~-----------------~A~~~~~~al~~~p~-------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~ 651 (703)
.. ..|... .-..+-+-+++..+. ...+.++.-+++++...|+.++|...++...
T Consensus 252 l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 252 LK--HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HH--HTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH--hcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22 222220 112334444443222 1234477788899999999999999999987
Q ss_pred cccCCCCChHhHHHHHH
Q psy6461 652 QICDPRVTAGFWAAWKS 668 (703)
Q Consensus 652 ~~~~~~~~~~~~~~~~~ 668 (703)
+..||- -...|+..+.
T Consensus 330 ~~~dpi-r~~yw~~~~~ 345 (349)
T 3q7a_A 330 SEYDQM-RAGYWEFRRR 345 (349)
T ss_dssp HTTCGG-GHHHHHHHHH
T ss_pred hhhChH-HHHHHHHHHH
Confidence 555554 4778877654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-11 Score=101.39 Aligned_cols=133 Identities=16% Similarity=0.279 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+|..+|..+...|++++|..+|+++++..|.++ ..|..++.++...|++++|...+++++...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------- 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----------
Confidence 577788888888889999999998888877776 778888888888888999999998888888764
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
...|..++.++...|++ ++|...++++++..|.+ ..
T Consensus 69 -------~~~~~~l~~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~--~~ 104 (136)
T 2fo7_A 69 -------AEAWYNLGNAYYKQGDY-----------------------------------DEAIEYYQKALELDPRS--AE 104 (136)
T ss_dssp -------HHHHHHHHHHHHTTTCH-----------------------------------HHHHHHHHHHHHHCTTC--HH
T ss_pred -------hHHHHHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHHhCCCC--hH
Confidence 66777777666665554 88888888888888877 56
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 554 LYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 554 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
.+..++.++...|++++|...+++++...|.
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7888888888888888888888888887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-10 Score=112.19 Aligned_cols=233 Identities=10% Similarity=0.019 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
+.+++-.+..+....+..++|+..+++++..+|.+. .+|+.-+.+....| .+++++..+++++..+|++
T Consensus 53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------ 122 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------ 122 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------
Confidence 345555555555566777899999999999999997 99999999998888 5999999999999999995
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhc-CChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESF-GTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
..+|.....+.... +. +++++...++++++.+|.
T Consensus 123 -----------y~aW~hR~wlL~~l~~~----------------------------------~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 123 -----------YQVWHHRLLLLDRISPQ----------------------------------DPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp -----------HHHHHHHHHHHHHHCCS----------------------------------CCHHHHHHHHHHTSSCTT
T ss_pred -----------HHHHHHHHHHHHHhcCC----------------------------------ChHHHHHHHHHHHHhCCC
Confidence 89999988777665 31 248999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCChH--------HHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcC-------chHHHHHHHH
Q psy6461 549 RYAKTLYLLYAKLEEEHGLAR--------HAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYG-------IPKTRQIYER 613 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~ 613 (703)
+ ..+|..-+.+....|.++ +++..++++++.+|.+...+.+..++.. ..++ ++++.+.+.+
T Consensus 158 N--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~--~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 158 N--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV--SRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp C--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT--TSTTCCCCHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hccccccchHHHHHHHHHHHH
Confidence 9 569999999888888887 9999999999999999665555554433 3333 6889999999
Q ss_pred HHHhCCCcchHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHhcccCCC-------CChHhHHHHHHH
Q psy6461 614 AIESLPEEPTRQMCLKFAEMETKLGEID-----------------RARAIYAHCSQICDPR-------VTAGFWAAWKSF 669 (703)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~-----------------~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~ 669 (703)
++..+|++.. +|..+..++.+.|... .--.+-+.|.+..+.. .....+..++++
T Consensus 234 aI~~~P~n~S--aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 311 (349)
T 3q7a_A 234 SIHLIPHNVS--AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADS 311 (349)
T ss_dssp HHHHCTTCHH--HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHH
T ss_pred HHHhCCCCHH--HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHH
Confidence 9999999987 8998888888877641 1124455566554322 367888999999
Q ss_pred HHHcCCHHHHHHHHH
Q psy6461 670 EITHGNEDTMREMLR 684 (703)
Q Consensus 670 ~~~~g~~~~~~~~~~ 684 (703)
+...|+.++|.++++
T Consensus 312 ~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 312 FIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHH
Confidence 998999888877663
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=108.55 Aligned_cols=117 Identities=10% Similarity=-0.037 Sum_probs=105.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHH
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFD 130 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 130 (703)
..|+++++.+|.+...|..++...... |++++|...|++++..+|+++.+|..++.++...|++++|...|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA--------GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH--------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 578899999999999999988877654 899999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 131 RALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 131 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+++..+| .++.+|..++.++...|++++|+..|+++++.+|++..
T Consensus 77 ~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 77 YGALMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999 45888999999999999999999999999999988753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-11 Score=109.64 Aligned_cols=124 Identities=13% Similarity=0.133 Sum_probs=95.4
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhccC
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRF-LMDQHK 121 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~ 121 (703)
.+++++|...|+++++.+|.+...|..++..+... |++++|...|+++++..|+++.+|..++.+ +...|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--------NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 57778888888888888888888888877776553 778888888888888888888888888888 667777
Q ss_pred h--HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 122 I--TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 122 ~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+ ++|...|+++++..| .+..+|..++.++...|++++|+..|+++++.+|.+.
T Consensus 95 ~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred cchHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 7 888888888888888 3467777778887788888888888888888887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=120.17 Aligned_cols=193 Identities=11% Similarity=0.054 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....+...|..+...|++++|+..|+++++.+|.++ .+|..+|.++...|++++|...++++++.+|++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------- 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQS------- 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------
Confidence 456788889999999999999999999999999887 899999999999999999999999999999985
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...++.++.++...|++ ++|...|+++++..|++.
T Consensus 72 ----------~~~~~~lg~~~~~~g~~-----------------------------------~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 72 ----------VKAHFFLGQCQLEMESY-----------------------------------DEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCccch
Confidence 78888888888877765 999999999999988652
Q ss_pred ---hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHH
Q psy6461 551 ---AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMC 627 (703)
Q Consensus 551 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 627 (703)
...+|..+.. .++...........|.+.. +...+..+. .|++++|...++++++..|++.. +.
T Consensus 107 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~--~~ 172 (281)
T 2c2l_A 107 LNFGDDIPSALRI--------AKKKRWNSIEERRIHQESE--LHSYLTRLI--AAERERELEECQRNHEGHEDDGH--IR 172 (281)
T ss_dssp CCCCSHHHHHHHH--------HHHHHHHHHHHTCCCCCCH--HHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH--HT
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHH--HHHHHHHHH--HHHHHHHHHHHHhhhccccchhh--hh
Confidence 1123333311 1222223333344555432 333333332 57889999999999999998754 55
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhcc
Q psy6461 628 LKFAEMETKL-GEIDRARAIYAHCSQI 653 (703)
Q Consensus 628 ~~~a~~~~~~-g~~~~A~~~~~~a~~~ 653 (703)
..+..++.+. +.+++|..+|.++.+.
T Consensus 173 ~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 173 AQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6666666665 6788999999988764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.5e-11 Score=98.91 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=95.8
Q ss_pred hcCCCcHHHHHHHHhhhc--CCc------hhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 348 RQNPHNVLEWHKRVRLFD--GKP------LDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDK 417 (703)
Q Consensus 348 ~~~p~~~~~~~~~~~~~~--~~~------~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 417 (703)
-.+|.+++.|+.++.+.+ |++ +..+++|++|+..+||.. .+..+..+|+.||.+ ...++.++|+++|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 457999999999999887 898 899999999999998864 334678999999988 456999999999999
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 418 ATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
|++++. .|+.+|+.+|+++.++|+...|++++.+|+..+|.+
T Consensus 86 a~~~hK----kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 86 ARANCK----KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCT----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHhH----HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 998722 236999999999999999999999999999999985
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-10 Score=104.04 Aligned_cols=125 Identities=10% Similarity=0.058 Sum_probs=111.6
Q ss_pred cCCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcccCCCCchhH--
Q psy6461 13 ENEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKL-RRKQVKGKVITDPSY-- 88 (703)
Q Consensus 13 ~~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~-~~~~~~~~~~~~~~~-- 88 (703)
..+....|+++++.+|.+...|..++..+. .|++++|...|+++++.+|.++.+|..++.. .... |++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~--------~~~~~ 97 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA--------SQHMT 97 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--------TTCCC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--------CCcch
Confidence 344557899999999999999999999988 9999999999999999999999999999987 4443 777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHH
Q psy6461 89 EDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPL 147 (703)
Q Consensus 89 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 147 (703)
++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..|.+ ...+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--SCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--ccHHHH
Confidence 999999999999999999999999999999999999999999999999953 444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-11 Score=122.14 Aligned_cols=148 Identities=7% Similarity=-0.010 Sum_probs=126.3
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHh
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---------------YKLWYNYLKLRRKQ 77 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---------------~~~w~~~~~~~~~~ 77 (703)
.+....|++++..+|.+...|..++..+. .+++++|...|+++++.+|.+ ..+|..++..+...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445778888889999999999999888 999999999999999999999 58888888877664
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCC
Q psy6461 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV 157 (703)
Q Consensus 78 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 157 (703)
|++++|...|+++++.+|+++.+|..++.++...|++++|+..|+++++..| .+..+|..++.++...|+
T Consensus 210 --------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 210 --------QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp --------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 457788888888888888
Q ss_pred hHHH-HHHHHHHHhh
Q psy6461 158 PETA-VRVFRRYLKL 171 (703)
Q Consensus 158 ~~~A-~~~~~~~l~~ 171 (703)
.++| ...|++++..
T Consensus 280 ~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 280 QLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 7777 4566666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=99.70 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=93.6
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|.+.+.|...+.... .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++.+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--------MSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCcH
Confidence 456677888887777 88899999999999999998888888888877654 788889999999998888888
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhC------CcccccccHHHHHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRAL------PITQHHRVWPLYLSFV 152 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~ 152 (703)
.+|..++.++...|++++|...|+++++.. | .+..++..+..+.
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p--~~~~~~~~l~~~~ 122 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS--SAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch--hHHHHHHHHHHHH
Confidence 888888888888889999999999988888 6 3455555555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-10 Score=114.73 Aligned_cols=197 Identities=12% Similarity=0.014 Sum_probs=131.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHH
Q psy6461 437 AELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIW 516 (703)
Q Consensus 437 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~ 516 (703)
+.++...|++++|...|.+++...+..-+.. .....+...+.++...|+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------~~a~~~~~lg~~~~~~g~-------------------- 91 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLF-----------HAAKAFEQAGMMLKDLQR-------------------- 91 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHHHHhCCC--------------------
Confidence 4556678899999999998887654321000 013344455555554444
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc--c--hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HH
Q psy6461 517 NTYLTKFLSRYGGTKLERARDLFEQCLEACPPR--Y--AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MF 588 (703)
Q Consensus 517 ~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~ 588 (703)
+++|+..|++++++.+.. . ....+..+|.++.. |++++|+..|++++...|... ..
T Consensus 92 ---------------~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 92 ---------------MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp ---------------GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 488888888888874322 1 13577888888888 999999999999988876431 23
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCC---hH
Q psy6461 589 EMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT----RQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVT---AG 661 (703)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~ 661 (703)
..+......+...|++++|...|+++++..|++.. ...++..+.++...|++++|+..|++++ +.|.... ..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 45666777777888999999999999987664431 2366777778888899999999999999 6443211 12
Q ss_pred hHHHHHHHHHHcCCHHHHHHH
Q psy6461 662 FWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 662 ~~~~~~~~~~~~g~~~~~~~~ 682 (703)
+...+.... ..|+.+.+.++
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHHH
Confidence 233333322 45777777664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-09 Score=104.51 Aligned_cols=221 Identities=9% Similarity=0.001 Sum_probs=169.4
Q ss_pred HcCCh-HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 404 VNDQL-EDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ----------EEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 404 ~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+.|++ ++|...+.+++..+|.+. .+|+.-..+....+. +++++..++.++..+|++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn--------- 107 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--------- 107 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---------
Confidence 35555 489999999999999997 899988887766544 688999999999999984
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchH
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAK 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 552 (703)
..+|.....+....+.. .++++...++++++.+|.+ .
T Consensus 108 --------y~aW~hR~wlL~~l~~~---------------------------------~~~~EL~~~~k~l~~dprN--y 144 (331)
T 3dss_A 108 --------YGTWHHRCWLLSRLPEP---------------------------------NWARELELCARFLEADERN--F 144 (331)
T ss_dssp --------HHHHHHHHHHHHHCSSC---------------------------------CHHHHHHHHHHHHHHCTTC--H
T ss_pred --------HHHHHHHHHHHhccCcc---------------------------------cHHHHHHHHHHHHHhCCCC--H
Confidence 89999988777766531 2488999999999999999 5
Q ss_pred HHHHHHHHHHHHcCC-hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH------------hcCchHHHHHHHHHHHhCC
Q psy6461 553 TLYLLYAKLEEEHGL-ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE------------IYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~------------~~~~~~A~~~~~~al~~~p 619 (703)
.+|..-+.+....|. +++++..+++++..+|.+.+.+.+..++..... .+.++++.+.+.+++..+|
T Consensus 145 ~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 145 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 699999999999998 599999999999999999776666666554431 0457899999999999999
Q ss_pred CcchHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH---HcCCHHHHHHHHH
Q psy6461 620 EEPTRQMCLKFAEMETKL-----------GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI---THGNEDTMREMLR 684 (703)
Q Consensus 620 ~~~~~~~~~~~a~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~ 684 (703)
++.. +|.....++.+. +.+++++..++.++++. |+ +.=.+...+.+.. ..|..++..+.+.
T Consensus 225 ~d~S--aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~ 299 (331)
T 3dss_A 225 NDQS--AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PE-NKWCLLTIILLMRALDPLLYEKETLQYFS 299 (331)
T ss_dssp TCHH--HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cc-cchHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 9987 897665555554 35789999999999984 55 2222222222222 2355555555554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=122.62 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=114.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---------------HH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---------------PR 107 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~ 107 (703)
..++++|...|+++++..|.+...|..++..+... |++++|...|+++++..|.+ ..
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~--------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE--------GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 46788899999999999999999999999887765 89999999999999999998 69
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+|..++.++...|++++|...|+++++.+| .+..+|..++.++...|++++|+..|+++++.+|++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999 4588899999999999999999999999999999885
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=98.63 Aligned_cols=121 Identities=13% Similarity=0.032 Sum_probs=107.5
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
..|.+...|..++..+. .+++++|...|+++++.+|.+...|..++..+.. .|++++|...|+++++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--------LLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--------TTCHHHHHHHHHHHHHHCTT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHhCCC
Confidence 35788899999998888 9999999999999999999999999998887644 38899999999999999999
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
++.+|..++.++...|++++|...|+++++..| ....+|..++.++...|
T Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 45777888887776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-10 Score=101.33 Aligned_cols=131 Identities=9% Similarity=0.005 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
....|..++.... .|++++|...|+++++.+|.+..+|..++...... |++++|...|+++++..|.++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------ECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCcccHHH
Confidence 3466777777766 88888888888888888888888888887776553 77888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHH--HHHHHhcCChHHHHHHHHHHHh
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLY--LSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
|..++.++...|++++|...|+++++..|. +..+|..+ +..+...|++++|+..+.+...
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888888888888884 34555333 3335556667777777666543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-10 Score=113.73 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=158.3
Q ss_pred CCchhHHHHHHHHHHhcCCCcc--CCc---hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC--cchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLA--VGK---LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTK--VEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~--~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~ 438 (703)
|++.+|.+.++++....+.... .+. ....+...+.++...|++++|...|++++...+.. .......+..++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666677766654332110 111 22355556777888999999999999999885432 2233468889999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHH
Q psy6461 439 LELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNT 518 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~ 518 (703)
++...|++++|+..|++++...+...+.. .....+...+.++.. |+
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~-----------~~a~~~~~lg~~~~~-g~---------------------- 130 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPD-----------TAAMALDRAGKLMEP-LD---------------------- 130 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHH-----------HHHHHHHHHHHHHTT-TC----------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHHHHc-CC----------------------
Confidence 99999999999999999998754311000 013445555555544 44
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHH
Q psy6461 519 YLTKFLSRYGGTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEM 590 (703)
Q Consensus 519 y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~ 590 (703)
+++|...|++++...|... ...++..+|.++...|++++|+..|++++...|.+. ....
T Consensus 131 -------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 131 -------------LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 4999999999999876431 136889999999999999999999999999876542 1224
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch---HHHHHHHHHHHHHcCCHHHHHH
Q psy6461 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT---RQMCLKFAEMETKLGEIDRARA 645 (703)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~a~~~~~~g~~~~A~~ 645 (703)
+...+......|++++|+..|++++ ..|+... ......++..+ ..|+.+.+..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 4455555566799999999999999 9986542 12334444433 5677665555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.8e-11 Score=116.52 Aligned_cols=156 Identities=10% Similarity=-0.018 Sum_probs=119.3
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP 106 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (703)
|.+...|..++..+. .|++++|...|+++++.+|.+..+|..++..+... |++++|...|+++++.+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--------QQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCCH
Confidence 678889999998888 99999999999999999999999999999887764 899999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc---cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH--HHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH---HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED--YIE 181 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~ 181 (703)
.+|..+|.++...|++++|...|+++++..|.+.. ..+|..+.. .++...........|.+... +..
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------AKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------HHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999885311 222332211 12222222333445555442 222
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q psy6461 182 YLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 182 ~~~~~~~~~~A~~~~~~~~ 200 (703)
.+ ..|++++|++.++.++
T Consensus 145 ~l-~~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 145 RL-IAAERERELEECQRNH 162 (281)
T ss_dssp HH-HHHHHHHHHTTTSGGG
T ss_pred HH-HHHHHHHHHHHHHhhh
Confidence 22 3677888877777665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=97.99 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=106.7
Q ss_pred hcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 25 LRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 25 ~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
+.+|.+...|..++.... .+++++|...|+++++.+|.+...|..++...... |++++|...|+++++..|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL--------GNYAGAVQDCERAICIDP 77 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCT
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------hchHHHHHHHHHHHhcCc
Confidence 346777888888888887 89999999999999999999999999888877654 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
+++.+|..++.++...|++++|...|+++++..|. ...+|..++.++...|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999984 467788888887766653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=98.22 Aligned_cols=99 Identities=9% Similarity=-0.035 Sum_probs=82.0
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..|..++.... .|++++|...|+++++.+|++...|..++..+... |++++|...|+++++.+|+++.+|.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~P~~~~~~~ 89 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------EKDGLAIIALNHARMLDPKDIAVHA 89 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45777777666 88999999999999999999999998888877654 7888999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.++.++...|++++|...|+++++..|.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999998899999999999999988884
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-10 Score=101.60 Aligned_cols=110 Identities=11% Similarity=0.036 Sum_probs=91.5
Q ss_pred cCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
.+|.+...|..++..+. .+++++|...|+++++.+|.+..+|..++..+... |++++|...|+++++.+|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--------GQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCC
Confidence 35667788888888777 88888898899999888888888888888877654 7888888888888888888
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVW 145 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 145 (703)
++.+|..++.++...|++++|...|+++++..|. +...|
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 116 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN--GGSDA 116 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS--SCCHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--chHHH
Confidence 8888888888888888888888888888888884 34544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=97.23 Aligned_cols=119 Identities=10% Similarity=-0.025 Sum_probs=97.7
Q ss_pred hcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 25 LRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 25 ~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
..+|.+...|..++..+. .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++.+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--------QQPEQALADCRRALELDG 74 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCT
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCc
Confidence 457888899999998888 89999999999999999999999999988887654 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc---ccccHHHHHHH
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ---HHRVWPLYLSF 151 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~ 151 (703)
+++.+|..++.++...|++++|...|++++...|... ...++..+...
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888411 34444444444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-09 Score=92.05 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCCC-hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC
Q psy6461 27 NPFS-VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK 104 (703)
Q Consensus 27 ~P~~-~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 104 (703)
+|.+ ...|..++.... .+++++|...|+++++..|.+...|..++...... |++++|...|++++...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTT
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHhCCc
Confidence 5655 678888888777 88899999999999988888888888888776553 7888889999998888888
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS 154 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 154 (703)
++.+|..++.++...|++++|...|+++++..|. ...++..++.++..
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHh
Confidence 8888888888888888899999999998888884 45666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-10 Score=108.96 Aligned_cols=203 Identities=9% Similarity=-0.039 Sum_probs=157.8
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHH-------HHHHHHcCChHHHHHHHHHhhccCCCCcc-----------
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEF-------GKFYEVNDQLEDARLIFDKATLVPYTKVE----------- 427 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~~~~~~----------- 427 (703)
++...|+..|.+++... | ..+++|+.+ +..+...+...++...+.+.+.+.|....
T Consensus 20 ~d~~~A~~~F~~a~~~d-P-----~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD-E-----SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred CCHHHHHHHHHHHHHhC-h-----hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 88899999999999973 4 468999999 78888888889999999999997664321
Q ss_pred ------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHH
Q psy6461 428 ------DLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYE 501 (703)
Q Consensus 428 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 501 (703)
.-..+++.|+.++...|++++|...|..++...|.+ . ..+..+.++...++
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----------------~-~~~~~a~l~~~~~r----- 150 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH-----------------L-VAWMKAVVYGAAER----- 150 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----------------H-HHHHHHHHHHHTTC-----
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----------------H-HHHHHHHHHHHcCC-----
Confidence 114788899999999999999999999999888863 4 55555555555554
Q ss_pred hHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Q psy6461 502 KGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA 581 (703)
Q Consensus 502 ~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 581 (703)
+++|+..|++++...+......+++.+|..+...|++++|+..|++++..
T Consensus 151 ------------------------------~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 151 ------------------------------WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp ------------------------------HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred ------------------------------HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 49999999977664322111248999999999999999999999999854
Q ss_pred c--CcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHH
Q psy6461 582 V--LPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFA 631 (703)
Q Consensus 582 ~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (703)
. |.. ....+........++|+.++|+.+|++++...|+ +. ++..+.
T Consensus 201 ~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~--~~~aL~ 248 (282)
T 4f3v_A 201 PAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK--VAAALK 248 (282)
T ss_dssp TTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH--HHHHHH
T ss_pred CCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH--HHHHHh
Confidence 4 331 2345556666677789999999999999999998 54 555553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.13 E-value=8.7e-10 Score=99.08 Aligned_cols=133 Identities=17% Similarity=0.069 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...|..+|..+...|++++|...|+++++..|.++ .+|..++.++...|++++|+..+++++...|.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELDKKY-------- 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------
Confidence 45678888888899999999999999999888886 888999999999999999999999999988874
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
...|..++.++...|++ ++|...|+++++..|.+
T Consensus 81 ---------~~~~~~~a~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~p~~-- 114 (166)
T 1a17_A 81 ---------IKGYYRRAASNMALGKF-----------------------------------RAALRDYETVVKVKPHD-- 114 (166)
T ss_dssp ---------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC--
T ss_pred ---------HHHHHHHHHHHHHhccH-----------------------------------HHHHHHHHHHHHhCCCC--
Confidence 67788888777776665 88999999999999987
Q ss_pred HHHH--HHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 552 KTLY--LLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 552 ~~~~--~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
...+ +..+..+...|++++|+..++++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 4455 444444777788888888888765543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=101.44 Aligned_cols=147 Identities=11% Similarity=-0.005 Sum_probs=124.2
Q ss_pred HHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHH
Q psy6461 33 HWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLD 111 (703)
Q Consensus 33 ~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 111 (703)
.+..++..+. .|++++|...|++++ .| ++..|..++..+... |++++|...|+++++.+|+++.+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTIL--------KNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3455666666 899999999999996 34 788999988887654 89999999999999999999999999
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhCCccc--------------ccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 112 YGRFLMDQHKITQTRHVFDRALRALPITQ--------------HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 112 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
+|.++...|++++|...|+++++..|.+. ...+|..++.++...|++++|+..|+++++.+|++.
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 155 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR- 155 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG-
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc-
Confidence 99999999999999999999999888532 127788889999999999999999999999999873
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q psy6461 178 DYIEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 178 ~~~~~~~~~~~~~~A~~~~~~~ 199 (703)
.+..+.++..+.+.
T Consensus 156 --------~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 156 --------HSKIDKAMECVWKQ 169 (213)
T ss_dssp --------GGHHHHHHHHHHTT
T ss_pred --------cchHHHHHHHHHhc
Confidence 34555565555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-10 Score=97.76 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=108.6
Q ss_pred HHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHH
Q psy6461 22 EEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFER 97 (703)
Q Consensus 22 ~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 97 (703)
+....+|.+...|...+.... .+++++|...|+++++.+|++ ..+|..++..+... |++++|...|++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~ 90 (148)
T 2dba_A 19 RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--------EDYDKAETEASK 90 (148)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH--------ccHHHHHHHHHH
Confidence 445668899999999999888 999999999999999999998 88898888877654 889999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH
Q psy6461 98 SLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153 (703)
Q Consensus 98 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 153 (703)
+++..|+++.+|..++.++...|++++|...|+++++..|. +..+|..+..+..
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 144 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK--NKVFQEALRNISG 144 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHC
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999994 5777777777653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-10 Score=92.26 Aligned_cols=103 Identities=13% Similarity=0.292 Sum_probs=73.8
Q ss_pred cCCCChHHHHHHHHHhh-cCch------hHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 26 RNPFSVKHWLRYIEHKK-NAPK------AIINTIYERSLKELPGS--------YKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 26 ~~P~~~~~w~~~~~~~~-~~~~------~~a~~~~e~al~~~P~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
..|+|++.|..|+.... .|+. ++.+.+|+||+..-|-+ .-+|+.|+.+.. .++.++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e---------i~D~d~ 78 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA---------IQEPDD 78 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH---------HHCGGG
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH---------hcCHHH
Confidence 47999999999999888 8888 99999999999999954 356666665521 145666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
|+.+|+.|++.+.+-..+|+.+++|+.++|+++.||+++.+|+-..|
T Consensus 79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 79 ARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 66666666666555566666666666666666666666666666665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-10 Score=94.65 Aligned_cols=108 Identities=7% Similarity=-0.074 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc
Q psy6461 61 PGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ 140 (703)
Q Consensus 61 P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 140 (703)
|.+...|...+...... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+| .
T Consensus 1 p~~a~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~ 70 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTK--------SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--N 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T
T ss_pred CchHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--C
Confidence 34556777777666553 8999999999999999999999999999999999999999999999999999 4
Q ss_pred ccccHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCHHH
Q psy6461 141 HHRVWPLYLSFVKSHAVPETAVRVFRRYLKLF------PEDAED 178 (703)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~ 178 (703)
+...|..++.++...|++++|+..|+++++.+ |.+...
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~ 114 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHH
Confidence 58889999999999999999999999999999 766543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=90.42 Aligned_cols=113 Identities=9% Similarity=0.019 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
....|..++.... .|++++|...|++++..+|.++..|..++...... |++++|...++++++..|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--------GDYQKAYEDGCKTVDLKPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHhCcccHHH
Confidence 3466777777776 88888888888888888888888888888776654 77888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHH
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 152 (703)
|..++.++...|++++|...|+++++..|. ++.+|..++.+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 116 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHhh
Confidence 888888888888888888888888888883 466666665553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-09 Score=98.65 Aligned_cols=115 Identities=13% Similarity=0.005 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcC
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYG 603 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~ 603 (703)
+++|...|+++++. .+ +..+..++.++.. .+++++|+..|+++.+..|.+.....+..+..++.. .++
T Consensus 69 ~~~A~~~~~~A~~~--g~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 69 YPQARQLAEKAVEA--GS--KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHHHHHHHHHHHT--TC--HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHHHHC--CC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 46666666666442 23 3456666666655 556666666666666665521111223333333333 456
Q ss_pred chHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhcc
Q psy6461 604 IPKTRQIYERAIESLPEEPTRQMCLKFAEMETKL-G-----EIDRARAIYAHCSQI 653 (703)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g-----~~~~A~~~~~~a~~~ 653 (703)
+++|...|+++++. |.++. .+..++.++... | ++++|+.+|++|.+.
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 67777777777776 44444 566666666543 3 788888888888776
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-09 Score=92.05 Aligned_cols=121 Identities=13% Similarity=0.036 Sum_probs=98.5
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCccccc
Q psy6461 389 GKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHD 468 (703)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 468 (703)
+.....|..+|..+...|++++|+..|+++++..|.+. .+|..++.++...|++++|+..+++++...|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----- 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----- 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----
Confidence 45677888888888888899999999999888888776 788888888888888999999998888888874
Q ss_pred chhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC
Q psy6461 469 EAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 548 (703)
...|..++.++...|++ ++|+..|+++++.+|.
T Consensus 84 ------------~~~~~~la~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 84 ------------IKGYTRKAAALEAMKDY-----------------------------------TKAMDVYQKALDLDSS 116 (133)
T ss_dssp ------------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCGG
T ss_pred ------------hHHHHHHHHHHHHHhhH-----------------------------------HHHHHHHHHHHHhCCC
Confidence 67787877777766654 8888888888888888
Q ss_pred cchHHHHHHHHHHHHHcCC
Q psy6461 549 RYAKTLYLLYAKLEEEHGL 567 (703)
Q Consensus 549 ~~~~~~~~~~a~~~~~~g~ 567 (703)
+ ..++..++.++...|+
T Consensus 117 ~--~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 117 C--KEAADGYQRCMMAQYN 133 (133)
T ss_dssp G--THHHHHHHHHHHHHTC
T ss_pred c--hHHHHHHHHHHHHhcC
Confidence 7 4578888877766653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-09 Score=91.02 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-
Q psy6461 27 NPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK- 104 (703)
Q Consensus 27 ~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 104 (703)
+|.+...|..++.... .+++++|...|+++++.+|.+...|..++...... |++++|...|+++++..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------ERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCccc
Confidence 6888888888888777 88888888888888888888888888888776653 7788888888888888888
Q ss_pred -CHHHHHHHHHHHHhc-cChHHHHHHHHHHHHhCCc
Q psy6461 105 -MPRIWLDYGRFLMDQ-HKITQTRHVFDRALRALPI 138 (703)
Q Consensus 105 -~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~ 138 (703)
++.+|..++.++... |++++|...|++++...|.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 888888888888888 8888888888888888874
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-09 Score=98.81 Aligned_cols=133 Identities=10% Similarity=-0.065 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
.++..|..+...|++++|+..|++++ +| ++ .+|..++.++...|++++|+..|++++..+|++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------- 70 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------- 70 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------
Confidence 35677888889999999999999996 33 44 789999999999999999999999999999984
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc---
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--- 550 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--- 550 (703)
...|..++.++...|++ ++|...|+++++..|.+.
T Consensus 71 -------~~~~~~lg~~~~~~~~~-----------------------------------~~A~~~~~~al~~~~~~~~~~ 108 (213)
T 1hh8_A 71 -------AVAYFQRGMLYYQTEKY-----------------------------------DLAIKDLKEALIQLRGNQLID 108 (213)
T ss_dssp -------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHTTTTCSEEE
T ss_pred -------hHHHHHHHHHHHHcccH-----------------------------------HHHHHHHHHHHHhCCCccHHH
Confidence 78888888888877765 999999999999888752
Q ss_pred -----------hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 551 -----------AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 551 -----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
...+|..+|.++...|++++|...|+++++..|.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 13689999999999999999999999999999976
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=9.1e-10 Score=93.20 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccH
Q psy6461 66 LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVW 145 (703)
Q Consensus 66 ~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 145 (703)
.|...+...... |++++|...|+++++.+|+++.+|..+|.++...|++++|...|+++++.+| .+..+|
T Consensus 19 ~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKL--------ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Confidence 355555554443 8999999999999999999999999999999999999999999999999999 457899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 146 PLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 146 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
..++.++...|++++|+..|+++++.+|++.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999999999864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=98.26 Aligned_cols=112 Identities=8% Similarity=-0.006 Sum_probs=101.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 59 ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 59 ~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
..|.+...|...+..+... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 76 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMAR--------KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP- 76 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred hhhhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence 3456677788887776654 8999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 139 TQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
.+..+|..++.++...|++++|+..|+++++.+|++...++
T Consensus 77 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 77 -KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 45889999999999999999999999999999999987554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-10 Score=103.51 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=112.4
Q ss_pred CCCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHH
Q psy6461 14 NEEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY----------------KLWYNYLKLRRK 76 (703)
Q Consensus 14 ~~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~----------------~~w~~~~~~~~~ 76 (703)
.+....++......|.....|...+.... .+++++|...|+++++..|.++ .+|..++..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555556666777888999998887 9999999999999999999987 788888777665
Q ss_pred hcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC
Q psy6461 77 QVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA 156 (703)
Q Consensus 77 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 156 (703)
. |++++|...|+++++..|+++.+|..++.++...|++++|...|+++++..| .+..++..+..++...+
T Consensus 101 ~--------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 101 N--------KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLK 170 (198)
T ss_dssp T--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHH
T ss_pred h--------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999999999999999999999999999988 45777877777776666
Q ss_pred ChHHHH-HHHHHH
Q psy6461 157 VPETAV-RVFRRY 168 (703)
Q Consensus 157 ~~~~A~-~~~~~~ 168 (703)
+..++. ..|.+.
T Consensus 171 ~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 171 EARKKDKLTFGGM 183 (198)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHHHHH
Confidence 555544 334433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.8e-09 Score=90.30 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....+..+|..+...|++++|+..|++++...|.++ .+|..++.++...|++++|+..+.+++...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------- 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-------
Confidence 456777888888888888888888888888888776 778888888888888888888888888888774
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...|..++.++...|++ ++|...|+++++..|++
T Consensus 80 ----------~~~~~~~~~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~p~~- 113 (131)
T 2vyi_A 80 ----------SKAYGRMGLALSSLNKH-----------------------------------VEAVAYYKKALELDPDN- 113 (131)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHSTTC-
T ss_pred ----------HHHHHHHHHHHHHhCCH-----------------------------------HHHHHHHHHHHhcCccc-
Confidence 66777777777666554 88888888888888877
Q ss_pred hHHHHHHHHHHHHHcCCh
Q psy6461 551 AKTLYLLYAKLEEEHGLA 568 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g~~ 568 (703)
...+..++.++...|++
T Consensus 114 -~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 114 -ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -HHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHHhcC
Confidence 56788888877777664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-08 Score=97.12 Aligned_cols=192 Identities=11% Similarity=-0.017 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC--CCcchHHHHHHHHHHHHHHcCCHHH
Q psy6461 371 IIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY--TKVEDLATVWCEWAELELRAGQEEA 448 (703)
Q Consensus 371 a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (703)
++..|++.+..- + .....+..+|.++...|++++|+.++.+++..+| .+. +++...+.++++.|+.+.
T Consensus 85 a~~~l~~l~~~~-~-----~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l----ea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDK-Q-----NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT----ELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTS-C-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH----HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcC-C-----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH----HHHHHHHHHHHHCCCHHH
Confidence 567777766531 1 2244567889999999999999999999998876 444 889999999999999999
Q ss_pred HHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhC
Q psy6461 449 ALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYG 528 (703)
Q Consensus 449 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~ 528 (703)
|++.++++.+.+|+.+. ....+...++. .|..... +
T Consensus 155 A~k~l~~~~~~~~d~~~-------------~~d~~l~~Lae-------------------------a~v~l~~------g 190 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVS-------------GDNEMILNLAE-------------------------SYIKFAT------N 190 (310)
T ss_dssp HHHHHHHHHHHSCHHHH-------------HHHHHHHHHHH-------------------------HHHHHHH------T
T ss_pred HHHHHHHHHhcCccccc-------------cchHHHHHHHH-------------------------HHHHHHh------C
Confidence 99999999998882000 00112222211 1111110 2
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc----------CcchHHHHHHHHHHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV----------LPEEMFEMFNIYIKKA 598 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~~~~~~~~ 598 (703)
.+++.+|..+|+++....|+..++.+.+. +++..|++++|.+.++++++.. |++ +......+.+.
T Consensus 191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~--~~~LaN~i~l~ 265 (310)
T 3mv2_B 191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK--PTFLANQITLA 265 (310)
T ss_dssp CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH--HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC--HHHHHHHHHHH
Confidence 33569999999999998887211223333 7889999999999999877763 656 34444555555
Q ss_pred HHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 599 AEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
...|+ .|..+++++.+..|++|.
T Consensus 266 ~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 266 LMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHhCh--HHHHHHHHHHHhCCCChH
Confidence 55665 889999999999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=96.40 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC----C
Q psy6461 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG----Q 445 (703)
Q Consensus 370 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~ 445 (703)
+|...|+++.+. ..+.++..+|.++...+++++|+..|+++++. .++ ..++.++.++.. + +
T Consensus 4 eA~~~~~~aa~~--------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHc-CCCCCC
Confidence 577888888875 35778999999999999999999999999875 444 788999999877 6 8
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHH
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLS 525 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~ 525 (703)
+++|..+|+++.... ++..++.++.++..-..
T Consensus 69 ~~~A~~~~~~A~~~g-------------------~~~a~~~Lg~~y~~g~g----------------------------- 100 (212)
T 3rjv_A 69 YPQARQLAEKAVEAG-------------------SKSGEIVLARVLVNRQA----------------------------- 100 (212)
T ss_dssp HHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHTCGGG-----------------------------
T ss_pred HHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHcCCC-----------------------------
Confidence 999999999997653 26677777777654111
Q ss_pred HhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-
Q psy6461 526 RYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE- 600 (703)
Q Consensus 526 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~- 600 (703)
..+++++|...|+++++..|.+..+..+..++.++.. .+++++|+..|+++... |.+...... ...++..
T Consensus 101 --~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~--Lg~~y~~g 175 (212)
T 3rjv_A 101 --GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW--AGMMFQQG 175 (212)
T ss_dssp --SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH--HHHHHHHC
T ss_pred --CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH--HHHHHHcC
Confidence 0245699999999999998841115689999999998 88999999999999988 333323222 3333332
Q ss_pred hc-----CchHHHHHHHHHHHhCC
Q psy6461 601 IY-----GIPKTRQIYERAIESLP 619 (703)
Q Consensus 601 ~~-----~~~~A~~~~~~al~~~p 619 (703)
.+ ++++|...|+++++...
T Consensus 176 ~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 176 EKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC
Confidence 23 78999999999998854
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-08 Score=96.47 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=139.9
Q ss_pred HHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHH
Q psy6461 411 ARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADL 490 (703)
Q Consensus 411 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
|+..+++.+...+.+. ..+..++.++...|++++|++++.+++...|.. .+.......+++
T Consensus 85 a~~~l~~l~~~~~~~~----~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~---------------~~lea~~l~vqi 145 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP----YELYLLATAQAILGDLDKSLETCVEGIDNDEAE---------------GTTELLLLAIEV 145 (310)
T ss_dssp CCHHHHHTTTTSCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST---------------THHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc---------------CcHHHHHHHHHH
Confidence 7889999887754443 456788999999999999999999999988721 036777777777
Q ss_pred HHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCC-----cchHHHHHHHHHHHHHc
Q psy6461 491 EESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPP-----RYAKTLYLLYAKLEEEH 565 (703)
Q Consensus 491 ~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~a~~~~~~ 565 (703)
+...|+. +.|++.++++.+.+|+ + ...+.+.-+.+....
T Consensus 146 ~L~~~r~-----------------------------------d~A~k~l~~~~~~~~d~~~~~d-~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 146 ALLNNNV-----------------------------------STASTIFDNYTNAIEDTVSGDN-EMILNLAESYIKFAT 189 (310)
T ss_dssp HHHTTCH-----------------------------------HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCH-----------------------------------HHHHHHHHHHHhcCccccccch-HHHHHHHHHHHHHHh
Confidence 7776654 9999999999999993 3 123344334345555
Q ss_pred C--ChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh----------CCCcchHHHHHHHHH
Q psy6461 566 G--LARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIES----------LPEEPTRQMCLKFAE 632 (703)
Q Consensus 566 g--~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~~~a~ 632 (703)
| ++.+|..+|+.+.+.+|+. ....++. ...+.|++++|...++++++. .|+++. +....+.
T Consensus 190 g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~--~LaN~i~ 263 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT--FLANQIT 263 (310)
T ss_dssp TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH--HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH--HHHHHHH
Confidence 5 8999999999999999862 2233444 566789999999999988876 377765 6777777
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 633 METKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 633 ~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+....|+ +|..+++++.+..|.+
T Consensus 264 l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHhCh--HHHHHHHHHHHhCCCC
Confidence 8888897 8999999999985443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-10 Score=103.86 Aligned_cols=127 Identities=10% Similarity=-0.035 Sum_probs=106.0
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH----------------
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP---------------- 106 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------- 106 (703)
.++++++...++......+.....|...+...... |++++|...|++++...|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKK--------NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 45666666666666666666677777777766553 899999999999999999988
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
.+|..++.++...|++++|...|+++++..| ....+|..++.++...|++++|+..|+++++.+|++...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 159 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 8999999999999999999999999999999 4578899999999999999999999999999999987544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-08 Score=110.49 Aligned_cols=180 Identities=10% Similarity=0.017 Sum_probs=153.3
Q ss_pred cCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcCCCCCcccccchhhHH
Q psy6461 405 NDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ----------EEAALRLMARATATPARPVAYHDEAETVQ 474 (703)
Q Consensus 405 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 474 (703)
....++|...+++++..+|.+. .+|..-+.+....|+ +++++..++++++.+|++
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----------- 106 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----------- 106 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----------
T ss_pred CCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----------
Confidence 3445788999999999999997 999999998888777 999999999999999995
Q ss_pred HHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHH
Q psy6461 475 ARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTL 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 554 (703)
..+|...+.+....+.. +++++.+.++++++.+|.+ ..+
T Consensus 107 ------y~aW~hR~w~l~~l~~~---------------------------------~~~~el~~~~k~l~~d~~N--~~a 145 (567)
T 1dce_A 107 ------YGTWHHRCWLLSRLPEP---------------------------------NWARELELCARFLEADERN--FHC 145 (567)
T ss_dssp ------HHHHHHHHHHHHTCSSC---------------------------------CHHHHHHHHHHHHHHCTTC--HHH
T ss_pred ------HHHHHHHHHHHHHcccc---------------------------------cHHHHHHHHHHHHhhcccc--ccH
Confidence 89999988777766521 2489999999999999999 569
Q ss_pred HHHHHHHHHHcC-ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHH------------HhcCchHHHHHHHHHHHhCCCc
Q psy6461 555 YLLYAKLEEEHG-LARHAMAVYERATGAVLPEEMFEMFNIYIKKAA------------EIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 555 ~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~al~~~p~~ 621 (703)
|..-+.+....| .++++++.++++++.+|.+.+.+.+..++.... ..+.++++.+.+.+|+..+|++
T Consensus 146 W~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999 899999999999999999977766666665442 1245789999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCHHH
Q psy6461 622 PTRQMCLKFAEMETKLGEIDR 642 (703)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~ 642 (703)
.. +|..+..++.+.|..++
T Consensus 226 ~s--aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 226 QS--AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SH--HHHHHHHHHSCCCCCSC
T ss_pred cc--HHHHHHHHHhcCCCccc
Confidence 87 89999998888777554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=115.83 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=116.8
Q ss_pred CCchhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhc
Q psy6461 15 EEDLPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGS---------------YKLWYNYLKLRRKQV 78 (703)
Q Consensus 15 ~~~~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~---------------~~~w~~~~~~~~~~~ 78 (703)
+....|+..+..+|.....|...+..+. .+++++|...|+++++.+|.+ ..+|..++..+...
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~- 330 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL- 330 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4445677888889999999999999888 999999999999999999998 57888888776654
Q ss_pred ccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 79 KGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 79 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
|++++|+..|+++++.+|+++.+|..++.++...|++++|+..|+++++..| .+..+|..++.++...++.
T Consensus 331 -------g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 331 -------REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp -------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHH
T ss_pred -------cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence 7888899999999998898888888889988888999999999999998888 4577888888887777766
Q ss_pred HHHH-HHHHHH
Q psy6461 159 ETAV-RVFRRY 168 (703)
Q Consensus 159 ~~A~-~~~~~~ 168 (703)
++|. ..|++.
T Consensus 402 ~~a~~~~~~~~ 412 (457)
T 1kt0_A 402 NERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 6554 344443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-09 Score=90.99 Aligned_cols=107 Identities=11% Similarity=-0.012 Sum_probs=97.3
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC
Q psy6461 58 KELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALP 137 (703)
Q Consensus 58 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 137 (703)
...|.+...|...+...... |++++|...|++++...|+++.+|..++.++...|++++|...|+++++..|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG--------RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCccccHHHHHHHHHHHHHh--------CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 45788899999998887654 8999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q psy6461 138 ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPE 174 (703)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 174 (703)
.+..+|..++.++...|++++|+..|+++++.+|+
T Consensus 75 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 --QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 45889999999999999999999999999999887
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=88.81 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc
Q psy6461 60 LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT 139 (703)
Q Consensus 60 ~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 139 (703)
+|.+...|..++..... .|++++|...|+++++..|.++.+|..++.++...|++++|...|+++++..|..
T Consensus 2 ~p~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD--------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHS--------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 58888888888877654 3889999999999999999999999999999999999999999999999999941
Q ss_pred cccccHHHHHHHHHhc-CChHHHHHHHHHHHhhCCCCH
Q psy6461 140 QHHRVWPLYLSFVKSH-AVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~ 176 (703)
....+|..++.++... |++++|++.+++++..+|.+.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 1578899999999999 999999999999999998763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-09 Score=90.70 Aligned_cols=101 Identities=9% Similarity=0.099 Sum_probs=90.4
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCH--
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMP-- 106 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 106 (703)
...+|..++..+. +|++++|+..|+++++.+|.++.+|..++..+... |++++|+..|+++++..|+++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE--------KKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--------hhHHHHHHHHHHHHHhCcccchh
Confidence 4567888888777 99999999999999999999999999999887765 899999999999999988764
Q ss_pred -----HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 107 -----RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 107 -----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.++..+|.++...|++++|...|+++|...|+
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 47788889999999999999999999998884
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-10 Score=113.44 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=83.4
Q ss_pred hHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHhcccC
Q psy6461 20 YEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY-----------------KLWYNYLKLRRKQVKGK 81 (703)
Q Consensus 20 ~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~-----------------~~w~~~~~~~~~~~~~~ 81 (703)
++..++..|.....|...+..+. .+++++|...|+++++..|.+. .+|..++..+...
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~---- 243 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL---- 243 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT----
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 33344455667788999998888 9999999999999999999877 3666666665432
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH-hcCChHH
Q psy6461 82 VITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK-SHAVPET 160 (703)
Q Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~~ 160 (703)
|++++|...|+++++.+|+++.+|..++.++...|++++|+..|+++++..|. +..++..+..+.. ..+..+.
T Consensus 244 ----g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 244 ----KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp ----TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888878877778888888887788888888888888777773 4566666665532 3445566
Q ss_pred HHHHHHHHHhhCCCCH
Q psy6461 161 AVRVFRRYLKLFPEDA 176 (703)
Q Consensus 161 A~~~~~~~l~~~p~~~ 176 (703)
+.+.|++++...|.+.
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 7777777777777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=85.14 Aligned_cols=118 Identities=14% Similarity=0.288 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....|..+|..+...|++++|+..|+++++..|.++ .++..++.++...|++++|...+++++...|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 356788889999999999999999999999888776 888999999999999999999999999988874
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
...|..++.++...|++ ++|...|+++++..|++
T Consensus 77 ----------~~~~~~la~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~- 110 (125)
T 1na0_A 77 ----------AEAWYNLGNAYYKQGDY-----------------------------------DEAIEYYQKALELDPNN- 110 (125)
T ss_dssp ----------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHCTTC-
T ss_pred ----------HHHHHHHHHHHHHhcCH-----------------------------------HHHHHHHHHHHHhCCCc-
Confidence 67777777777766654 89999999999999988
Q ss_pred hHHHHHHHHHHHHHcC
Q psy6461 551 AKTLYLLYAKLEEEHG 566 (703)
Q Consensus 551 ~~~~~~~~a~~~~~~g 566 (703)
+.++..++.++...|
T Consensus 111 -~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 111 -AEAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcc
Confidence 567878877765543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=84.82 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...|..+|..+...|++++|+..|++++...|.++ .+|..++.++...|++++|...+++++...|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-------- 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--------
Confidence 45678888888889999999999999998888876 888888988888999999999999999888874
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
...|..++.++...|++ ++|+..|+++++..|++
T Consensus 72 ---------~~~~~~~a~~~~~~~~~-----------------------------------~~A~~~~~~~~~~~~~~-- 105 (118)
T 1elw_A 72 ---------GKGYSRKAAALEFLNRF-----------------------------------EEAKRTYEEGLKHEANN-- 105 (118)
T ss_dssp ---------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHTTCTTC--
T ss_pred ---------HHHHHHHHHHHHHHhhH-----------------------------------HHHHHHHHHHHHcCCCC--
Confidence 67788887777776654 88999999999988887
Q ss_pred HHHHHHHHHHH
Q psy6461 552 KTLYLLYAKLE 562 (703)
Q Consensus 552 ~~~~~~~a~~~ 562 (703)
+.++..++.+.
T Consensus 106 ~~~~~~l~~~~ 116 (118)
T 1elw_A 106 PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 56777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=91.21 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLS 184 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 184 (703)
....|..+|..+..+|++++|...|++|++.+| .+..+|..++.++...|++++|+..|+++++++|++...+.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---- 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK---- 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH----
Confidence 446677889999999999999999999999999 45788888999999999999999999999988776531100
Q ss_pred hcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHH
Q psy6461 185 SIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIR 264 (703)
Q Consensus 185 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (703)
....++..+|..+..
T Consensus 81 -----------------------------------------------------------------~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 81 -----------------------------------------------------------------LIAKAMSRAGNAFQK 95 (127)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 012578889999999
Q ss_pred hCchHHHHHHHHHHHhhcCCc
Q psy6461 265 SGLFERARDIYEEAIQTVTTV 285 (703)
Q Consensus 265 ~~~~~~A~~~~~~~l~~~~~~ 285 (703)
.|++++|+..|++++...|+.
T Consensus 96 ~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCHHHHHHHHHHHHHHSCCH
T ss_pred cCCHHHHHHHHHHHHhhCcCH
Confidence 999999999999999987764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-10 Score=120.97 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=101.4
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..|..++..+. .|++++|...|+++++.+|.+...|..++..+... |++++|...|+++++.+|+++.+|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------ECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34444555555 78999999999999999999999999998887664 8899999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH--HHhcCChHHHHHHHH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF--VKSHAVPETAVRVFR 166 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~ 166 (703)
.++.++..+|++++|...|+++++..|. ...+|..++.+ +...|++++|++.++
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999994 46677777666 667788888888888
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-09 Score=113.06 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=132.7
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCc----------hhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCch
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAP----------KAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDP 86 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~----------~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~ 86 (703)
..++++|+.||.++.+|..-..... .++ ++++...++++++.+|.+..+|....-.... .+
T Consensus 50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~--------l~ 121 (567)
T 1dce_A 50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR--------LP 121 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--------CS
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cc
Confidence 4678899999999999998887776 555 8999999999999999999999887655432 14
Q ss_pred --hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc--------
Q psy6461 87 --SYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH-KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH-------- 155 (703)
Q Consensus 87 --~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------- 155 (703)
+++++...++++++.+|++..+|...+.+....| .++++...++++++.+| .+..+|...+.+....
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p--~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--CCccHHHHHHHHHHhhcccccccc
Confidence 5799999999999999999999999999999999 89999999999999999 4588998887776553
Q ss_pred ------CChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 156 ------AVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 156 ------~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
+.++++++.+.+++..+|++..+|.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 3458899999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.8e-09 Score=90.88 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=74.3
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc--CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG--KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
.+.+++|+..|+++++.+|++.+.|..+...+.....- .....+.+++|+..|++|++++|+++.+|..+|.++.+.|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 46689999999999999999999999999876654100 0000123679999999999999999999999999998876
Q ss_pred -----------ChHHHHHHHHHHHHhCC
Q psy6461 121 -----------KITQTRHVFDRALRALP 137 (703)
Q Consensus 121 -----------~~~~A~~~~~~al~~~p 137 (703)
++++|...|++|++.+|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 56666666666666666
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-09 Score=90.39 Aligned_cols=112 Identities=7% Similarity=0.031 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHhcccCCCCchhHHHHHHHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPG-------SYK-----LWYNYLKLRRKQVKGKVITDPSYEDVNNTFE 96 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~-------~~~-----~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 96 (703)
....|...+.... .|++++|...|+++|+.+|. +.. .|...+..+... |++++|...|+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L--------gr~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL--------RSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 3466777887777 99999999999999999999 554 999988877654 89999999999
Q ss_pred HHHHh-------cCCCHHHH----HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 97 RSLVF-------MHKMPRIW----LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 97 ~al~~-------~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
+||.. +|+++.+| ...|.++...|++++|...|+++++..|. ...+...+...
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~--d~~~~~~~~~~ 145 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE--RKGETPGKERM 145 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--CCSCCTTHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Confidence 99999 99999999 99999999999999999999999999994 45555555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=115.36 Aligned_cols=124 Identities=12% Similarity=0.034 Sum_probs=110.5
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---------------HH
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---------------PR 107 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~ 107 (703)
.+++++|...|+++++..|.....|...+..+... |++++|...|++|++.+|.+ ..
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~--------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG--------GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 45678888999999999999999999999887664 89999999999999999998 69
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+|..++.++...|++++|...|+++|+.+| .+..+|..++.++...|++++|+..|+++++.+|++.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999 4588899999999999999999999999999998875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=94.60 Aligned_cols=185 Identities=12% Similarity=-0.015 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVED--LATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
...+...+..+...|++++|...++++++..+..... ....+..++.++...|++++|...+.+++...+...+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~- 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ- 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH-
Confidence 3455667788889999999999999999887654321 1234556777788889999999999999987654321110
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH---HhC
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCL---EAC 546 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al---~~~ 546 (703)
...++...+.++...|++ ++|...|++++ +..
T Consensus 154 ----------~~~~~~~lg~~y~~~~~~-----------------------------------~~A~~~~~kal~~~~~~ 188 (293)
T 2qfc_A 154 ----------NLYIENAIANIYAENGYL-----------------------------------KKGIDLFEQILKQLEAL 188 (293)
T ss_dssp ----------HHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHHHHhc
Confidence 134666667676666654 99999999999 456
Q ss_pred CCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchH
Q psy6461 547 PPRY--AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTR 624 (703)
Q Consensus 547 p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 624 (703)
|++. ...++..+|.++...|++++|...++++++..+.... + ....
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-------------------------------~-~~~~ 236 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-------------------------------M-ALIG 236 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-------------------------------C-SSHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------------------------------H-HHHH
Confidence 6542 1258899999999999999999999999876532100 0 0012
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhccc
Q psy6461 625 QMCLKFAEMETKLGEIDRA-RAIYAHCSQIC 654 (703)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A-~~~~~~a~~~~ 654 (703)
.++...+.++.+.|++++| ...|++|+.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2555666666666766666 55666666553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=85.68 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=62.8
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---H
Q psy6461 34 WLRYIEHKK-NAPKAIINTIYERSLKELPGSY---KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---P 106 (703)
Q Consensus 34 w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~ 106 (703)
+...+.... .|++++|...|+++++.+|++. ..|..++...... |++++|...|+++++..|++ +
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT--------RNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHCCCCcccH
Confidence 444555444 6667777777777777666666 5666666555443 66666777777776666666 6
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 107 RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.++..++.++...|++++|...|+++++..|.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 66666666666666777777777766666663
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.91 E-value=9.5e-09 Score=89.28 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHhccChHHHHHHHHHH
Q psy6461 65 KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHK-------MPR-----IWLDYGRFLMDQHKITQTRHVFDRA 132 (703)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~a 132 (703)
..|...+...... |++++|...|++|++.+|+ +.. +|.+.+.++...|++++|...|+++
T Consensus 12 ~~~~~~G~~l~~~--------g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 12 YLALSDAQRQLVA--------GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--------CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555554443 8999999999999999999 444 9999999999999999999999999
Q ss_pred HHh-------CCcccccccH----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 133 LRA-------LPITQHHRVW----PLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 133 l~~-------~p~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
|+. +| ....+| ...+..+...|++++|+..|+++++++|++.
T Consensus 84 L~l~n~~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 84 LHYFNRRGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhccccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 999 99 468899 8889999999999999999999999999874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-07 Score=93.99 Aligned_cols=185 Identities=6% Similarity=-0.025 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWP 510 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~ 510 (703)
..+...+..+...|++++|...+.+++...+...... .....+...+.++..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~----------------- 127 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-----------QFLQWQYYVAAYVLK----------------- 127 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-----------HHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-----------HHHHHHHHHHHHHhc-----------------
Confidence 4455667777889999999999999998877530000 001111122222222
Q ss_pred chHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 511 YIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 511 ~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
.+++++|...|+++++..+... ...++..+|.++...|++++|...|+++++...
T Consensus 128 ------------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~--- 186 (293)
T 2qfc_A 128 ------------------KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE--- 186 (293)
T ss_dssp ------------------SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---
T ss_pred ------------------CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---
Confidence 3456889999999987654431 124677788888888888888888887774321
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC----CCh
Q psy6461 587 MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR----VTA 660 (703)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~ 660 (703)
..|+++ ...++..++.++...|++++|...+++|+++.+.. ...
T Consensus 187 ------------------------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 187 ------------------------------ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp ------------------------------HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred ------------------------------hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 112211 11367788888999999999999999998874211 127
Q ss_pred HhHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhh
Q psy6461 661 GFWAAWKSFEITHGNEDTM-REMLRIKRSVQAQYN 694 (703)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 694 (703)
.++...+......|+.++| ...++++..+....+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 7889999999999999999 777877777666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-08 Score=89.98 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHhcccCCCCchhHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKE------------------LPGSYKLWYNYLKLRRKQVKGKVITDPSYED 90 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~------------------~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 90 (703)
....|...+..+. .|++++|...|+++++. .|.+..+|..++..+... |++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------~~~~~ 81 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--------GDLHE 81 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH--------TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--------CcHHH
Confidence 4567888888777 99999999999999998 555556666666555443 56666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 91 VNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 91 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
|...++++++.+|+++.+|..+|.++...|++++|...|+++++.+|.
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 666666666666666666666666666666666666666666666663
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=87.18 Aligned_cols=113 Identities=9% Similarity=-0.050 Sum_probs=101.0
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHH
Q psy6461 58 KELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---PRIWLDYGRFLMDQHKITQTRHVFDRALR 134 (703)
Q Consensus 58 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 134 (703)
...|.+...|...+...... |++++|...|+++++..|++ +.+|..++.++...|++++|...|+++++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKC--------GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTT--------TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 45678889998888776543 89999999999999999987 89999999999999999999999999999
Q ss_pred hCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 135 ALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 135 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
..|. +..+|..++.++...|++++|+..|+++++.+|++...+.
T Consensus 94 ~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 94 KDGG--DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HTSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hCcc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 9994 5788999999999999999999999999999999876543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=86.81 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC-
Q psy6461 28 PFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM- 105 (703)
Q Consensus 28 P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 105 (703)
|.....|..++.... .|++++|...|+++++.+|.+..+|..++..+... |++++|...|++++...|.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--------GDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHhhccccc
Confidence 345678889998888 99999999999999999999999999999887665 89999999999999998877
Q ss_pred ------HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHH
Q psy6461 106 ------PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVK 153 (703)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 153 (703)
+.+|..++.++...|++++|...|++++...|. +..+..+..+..
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~ 123 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT---PDVLKKCQQAEK 123 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 899999999999999999999999999998883 455666655543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=90.13 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh----------HHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI----------TQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
+.+++|+..|+++++.+|+++.+|+.++.++...+++ ++|+..|++||+++| ....+|..++..+...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999998764 599999999999999 5688899999888876
Q ss_pred C-----------ChHHHHHHHHHHHhhCCCCHH
Q psy6461 156 A-----------VPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 156 ~-----------~~~~A~~~~~~~l~~~p~~~~ 177 (703)
| ++++|++.|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 4 789999999999999999863
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=88.38 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=56.2
Q ss_pred CchhHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 44 APKAIINTIYERSLKE---LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~---~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
|++++|+..|+++++. +|.+...|..++..+... |++++|...|+++++.+|+++.++..++.++...|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--------GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence 5566666677777666 466666666666665543 66666777777777666766666666666666667
Q ss_pred ChHHHHHHHHHHHHhCCc
Q psy6461 121 KITQTRHVFDRALRALPI 138 (703)
Q Consensus 121 ~~~~A~~~~~~al~~~p~ 138 (703)
++++|...|++++...|.
T Consensus 76 ~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSD 93 (117)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 777777777776666663
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-08 Score=103.23 Aligned_cols=160 Identities=15% Similarity=0.098 Sum_probs=120.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
.+++++|...|+++++.+|++ ..+|..+|.++...|++++|+..|+++++..|.+ ...+......+...|++++|.
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHH
Confidence 577899999999999999998 6799999999999999999999999999999987 456666777777889999999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhcccCCCC---------ChHhHHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEM--ETKLGEIDRARAIYA-----------HCSQICDPRV---------TAGFWAAW 666 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~--~~~~g~~~~A~~~~~-----------~a~~~~~~~~---------~~~~~~~~ 666 (703)
..|+++++..|+++. .+..++.+ +.+.|++++|+..++ ++++..+... .......+
T Consensus 95 ~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~l 172 (477)
T 1wao_1 95 RDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172 (477)
T ss_dssp HHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHH
Confidence 999999999999887 56666655 788899999999999 7776643211 12334444
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHHHHHHhh
Q psy6461 667 KSFEITHGN--EDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 667 ~~~~~~~g~--~~~~~~~~~~~~~~~~~~~ 694 (703)
.......+. .+.+..++..++.+-.+.+
T Consensus 173 ie~l~~~~~l~e~~v~~L~~~a~eil~~e~ 202 (477)
T 1wao_1 173 MQWYKDQKKLHRKCAYQILVQVKEVLSKLS 202 (477)
T ss_dssp HHHHHTCCCCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHccCC
Confidence 444444443 5555666777777554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.6e-09 Score=87.72 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=82.5
Q ss_pred chhHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHH
Q psy6461 85 DPSYEDVNNTFERSLVF---MHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 85 ~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A 161 (703)
.|++++|+..|+++++. +|+++.+|..++.++...|++++|...|+++++..|. ++.++..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHHH
Confidence 37889999999999999 6999999999999999999999999999999999994 588999999999999999999
Q ss_pred HHHHHHHHhhCCCCHH
Q psy6461 162 VRVFRRYLKLFPEDAE 177 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~ 177 (703)
+..|++++...|++..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999999999864
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.7e-08 Score=87.48 Aligned_cols=103 Identities=8% Similarity=0.043 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 65 KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF------------------MHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
..|...+..... .|++++|...|.+++.. .|.++.+|..++.++...|++++|.
T Consensus 12 ~~~~~~G~~~~~--------~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 12 EALRQKGNELFV--------QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 445555555444 38999999999999999 7778899999999999999999999
Q ss_pred HHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 127 HVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 127 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
..++++|+.+| .+..+|..++.++...|++++|+..|+++++.+|++..
T Consensus 84 ~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 84 ETSSEVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp HHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999 56889999999999999999999999999999999874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-08 Score=84.16 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHH
Q psy6461 47 AIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTR 126 (703)
Q Consensus 47 ~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~ 126 (703)
+.|...|+++++.+|.+...|..++..+... |++++|...|+++++..|+++.+|..++.++...|++++|+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH--------EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4577788888888888888888888776653 77888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCc
Q psy6461 127 HVFDRALRALPI 138 (703)
Q Consensus 127 ~~~~~al~~~p~ 138 (703)
..|+++++..|.
T Consensus 74 ~~~~~al~~~~~ 85 (115)
T 2kat_A 74 QAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 888888887774
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-07 Score=91.17 Aligned_cols=170 Identities=11% Similarity=-0.008 Sum_probs=125.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHH-----HH-HHHHHHHhcCChhHHHhHhhc
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL-----WS-LYADLEESFGTFKAYEKGIAL 506 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~e~al~~ 506 (703)
+...+..+...|++++|...+++++...+.. +.. |. ..+.++.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~l~~~~~-------------- 126 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-----------------PEFQQFLQWQYYVAAYVL-------------- 126 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC-----------------HHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCC-----------------hHHHHHHHHHHHHHHHHH--------------
Confidence 3344566778999999999999999877653 111 11 1122222
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch----HHHHHHHHHHHHHcCChHHHHHHHHHHhhcc
Q psy6461 507 FKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA----KTLYLLYAKLEEEHGLARHAMAVYERATGAV 582 (703)
Q Consensus 507 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 582 (703)
..+++++|...|++++...+.... ..++..+|.++...|++++|...|+++++..
T Consensus 127 ---------------------~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 127 ---------------------KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp ---------------------TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234669999999999996544321 2478999999999999999999999999532
Q ss_pred C---cc--hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCC-HHHHHHHHHHHhc
Q psy6461 583 L---PE--EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP----TRQMCLKFAEMETKLGE-IDRARAIYAHCSQ 652 (703)
Q Consensus 583 p---~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~-~~~A~~~~~~a~~ 652 (703)
. .+ ....++...+..+...|++++|...++++++..++.. ...++...+.++.+.|+ +++|...|++|++
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1 21 2344677777788889999999999999998764321 24588899999999995 6999999999988
Q ss_pred cc
Q psy6461 653 IC 654 (703)
Q Consensus 653 ~~ 654 (703)
+.
T Consensus 266 i~ 267 (293)
T 3u3w_A 266 FF 267 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-07 Score=92.33 Aligned_cols=176 Identities=10% Similarity=-0.050 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhccCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDL--ATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
...+..+...|++++|...++++++..+..+... ...+..++.++...+++++|+..|++++...+...+...
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----- 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ----- 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-----
Confidence 3345667789999999999999999876665221 123345777777888999999999999986544211100
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh---CCCc-
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA---CPPR- 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~- 549 (703)
...++...+.++...|++ ++|...|+++++. .|.+
T Consensus 154 ------~~~~~~~lg~~y~~~g~~-----------------------------------~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 154 ------NLYIENAIANIYAENGYL-----------------------------------KKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp ------HHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHSSCCH
T ss_pred ------HHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHHHHhcccch
Confidence 134566666666666554 8899999999863 2222
Q ss_pred -chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc----hHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHh
Q psy6461 550 -YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE----EMFEMFNIYIKKAAEIYG-IPKTRQIYERAIES 617 (703)
Q Consensus 550 -~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~ 617 (703)
....++..+|.++...|++++|...++++++..+.. ....++...+..+...|+ +++|...|++|+..
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 113588999999999999999999999999876543 123456666666777885 59999999999975
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.6e-08 Score=81.45 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc-cccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP---RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-HRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~A 161 (703)
|++++|...|+++++..|+++ .+|..++.++...|++++|...|++++...|.+.. +.++..++.++...|++++|
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A 95 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEA 95 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999998 89999999999999999999999999999994211 56688889999999999999
Q ss_pred HHHHHHHHhhCCCCHHH
Q psy6461 162 VRVFRRYLKLFPEDAED 178 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~~ 178 (703)
+..|++++..+|++...
T Consensus 96 ~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 96 QQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHCCCChHH
Confidence 99999999999998653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-07 Score=96.77 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=71.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC---CCcchHHHHHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY---TKVEDLATVWCEWAELELR 442 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~ 442 (703)
|++.+|...+.+++.........+....++...+.++...|++++|+..|++++...+ ..+.....++...+.++..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 6667777777766655433333344677899999999999999999999999987632 2222235678888888888
Q ss_pred cCCHHHHHHHHHHHhcCC
Q psy6461 443 AGQEEAALRLMARATATP 460 (703)
Q Consensus 443 ~~~~~~A~~~~~~a~~~~ 460 (703)
.+++++|...|.+++...
T Consensus 229 ~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFESY 246 (434)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh
Confidence 999999999999987643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-07 Score=86.06 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=116.8
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHH
Q psy6461 441 LRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYL 520 (703)
Q Consensus 441 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~ 520 (703)
+..|++++|...++.... +|.. ...++...+.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~----------------~~~~~~~l~~~~~~~g~~----------------------- 42 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPAT----------------ASGARFMLGYVYAFMDRF----------------------- 42 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTT----------------HHHHHHHHHHHHHHTTCH-----------------------
T ss_pred cccccHHHHHHHHHHhcC-ChHH----------------HHHHHHHHHHHHHHhCcH-----------------------
Confidence 457889999985544443 4432 366777777777766654
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---cCcc--hHHHHH
Q psy6461 521 TKFLSRYGGTKLERARDLFEQCLEACPPR----YAKTLYLLYAKLEEEHGLARHAMAVYERATGA---VLPE--EMFEMF 591 (703)
Q Consensus 521 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~ 591 (703)
++|+..|++++...... ....++..+|.++...|++++|...+++++.. .+++ .....+
T Consensus 43 ------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 43 ------------DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp ------------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 88999999998842211 11468899999999999999999999999987 3422 223455
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCC--cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPE--EP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
..........|++++|+..++++++..+. ++ ....+..++.++...|++++|+..+++++++.
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56666677789999999999999976432 22 12356788999999999999999999998874
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-08 Score=100.27 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLK----------------ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNN 93 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~----------------~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 93 (703)
...|..++..+. .+++++|...|+++++ ..|.+..+|..++..+... |++++|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------g~~~~A~~ 294 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--------SDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc--------cCHHHHHH
Confidence 456777887777 9999999999999998 4445555555555544432 45555555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCCh
Q psy6461 94 TFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVP 158 (703)
Q Consensus 94 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 158 (703)
.|+++++.+|+++.+|..++.++...|++++|...|+++++..|. +..++..+..++...++.
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555552 344444444444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=7.4e-08 Score=82.08 Aligned_cols=122 Identities=13% Similarity=0.038 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccch
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEA 470 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 470 (703)
....|..+|..+...|++++|+..|++++...|.++ .++..++.++...|++++|...+++++...|.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--- 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY--- 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH---
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH---
Confidence 356789999999999999999999999999999887 8999999999999999999999999998876421000
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc
Q psy6461 471 ETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY 550 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 550 (703)
......+..++.++...|+ +++|...|+++++..|+
T Consensus 76 -------~~~~~~~~~la~~~~~~~~-----------------------------------~~~A~~~~~~~~~~~~~-- 111 (131)
T 1elr_A 76 -------RQIAKAYARIGNSYFKEEK-----------------------------------YKDAIHFYNKSLAEHRT-- 111 (131)
T ss_dssp -------HHHHHHHHHHHHHHHHTTC-----------------------------------HHHHHHHHHHHHHHCCC--
T ss_pred -------HHHHHHHHHHHHHHHHhcc-----------------------------------HHHHHHHHHHHHHhCCC--
Confidence 0014556666666665555 48899999999998884
Q ss_pred hHHHHHHHHHHHHH
Q psy6461 551 AKTLYLLYAKLEEE 564 (703)
Q Consensus 551 ~~~~~~~~a~~~~~ 564 (703)
+..+..++.+...
T Consensus 112 -~~~~~~l~~~~~~ 124 (131)
T 1elr_A 112 -PDVLKKCQQAEKI 124 (131)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3566666655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.4e-09 Score=104.39 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
...|...|..+...|++++|+..|++++...|.+. .+ ...++..++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~-------~~~~~~~~~~~~l~----------------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MF-------QLYGKYQDMALAVK----------------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HH-------TCCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hh-------hhcccHHHHHHHHH-----------------
Confidence 45678889999999999999999999999887542 11 12233344433221
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcch
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA 551 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 551 (703)
..+|..++.++...|++ ++|+..|+++++.+|++
T Consensus 230 ---------~~~~~nla~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~~-- 263 (338)
T 2if4_A 230 ---------NPCHLNIAACLIKLKRY-----------------------------------DEAIGHCNIVLTEEEKN-- 263 (338)
T ss_dssp ---------THHHHHHHHHHHTTTCC-----------------------------------HHHHHHHHHHHHHCTTC--
T ss_pred ---------HHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHHhCCCC--
Confidence 24677778888777665 88899999999998888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHH-HHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKK-AAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
..+|..+|.++...|++++|+..|++++...|.+.. ++..+... ....+..+.++.+|.+++...|+++.
T Consensus 264 ~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~--a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 264 PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA--IRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 578888999988999999999999999988887743 33333333 22345677888899999988887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-07 Score=83.62 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc----chHHHHHHHHHHHHHHhcCc
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP----EEMFEMFNIYIKKAAEIYGI 604 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~ 604 (703)
.|++++|++.++.... +|... ..++..+|.++...|++++|+..+++++..... ......+......+...|++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATA-SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcC-ChHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4678999995555433 55432 578999999999999999999999999985321 12234555666667778999
Q ss_pred hHHHHHHHHHHHh---CCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC----ChHhHHHHHHHHHHcCC
Q psy6461 605 PKTRQIYERAIES---LPEEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV----TAGFWAAWKSFEITHGN 675 (703)
Q Consensus 605 ~~A~~~~~~al~~---~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~g~ 675 (703)
++|...++++++. .|+++ ...++..++.++...|++++|...+++++++.+... ....+..++......|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999998 55443 234678889999999999999999999997643221 23446788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy6461 676 EDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~ 694 (703)
.++|.+.++.+..+..+.+
T Consensus 163 ~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999888777765554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=97.27 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhc----------------cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATL----------------VPYTKVEDLATVWCEWAELELRAGQEEAALRLMAR 455 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 455 (703)
...|..+|..+...|++++|+..|+++++ ..|.+. .+|..++.++.+.|++++|+..+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~----~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL----SCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH----HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44678889999999999999999999998 334333 7788888888888888888888888
Q ss_pred HhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHH
Q psy6461 456 ATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERA 535 (703)
Q Consensus 456 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A 535 (703)
+++.+|++ ...|+.++.++...|++ ++|
T Consensus 299 al~~~p~~-----------------~~a~~~lg~~~~~~g~~-----------------------------------~eA 326 (370)
T 1ihg_A 299 ALEIDPSN-----------------TKALYRRAQGWQGLKEY-----------------------------------DQA 326 (370)
T ss_dssp HHTTCTTC-----------------HHHHHHHHHHHHHTTCH-----------------------------------HHH
T ss_pred HHHhCchh-----------------HHHHHHHHHHHHHccCH-----------------------------------HHH
Confidence 88888874 77788888777776664 888
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHH
Q psy6461 536 RDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMA 573 (703)
Q Consensus 536 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 573 (703)
+..|+++++.+|++ ..++..++.++...|+.+++.+
T Consensus 327 ~~~l~~Al~l~P~~--~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 327 LADLKKAQEIAPED--KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887 5678888887777776666544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-07 Score=95.22 Aligned_cols=214 Identities=11% Similarity=0.077 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcc-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVE-------------DLATVWCEWAELELRAGQEEAALRLMARATATP 460 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 460 (703)
..+.-|+-+...|++++|+..|.++++..|.... .....+..++.++...|++++|.+.+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455677778899999999999999998765431 123457889999999999999999999988765
Q ss_pred CCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q psy6461 461 ARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFE 540 (703)
Q Consensus 461 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~ 540 (703)
+.... .. ....+....+.+... .++.++|..+++
T Consensus 86 ~~~~~---------~~--~~~~~~~~l~~~~~~-----------------------------------~~~~~~a~~~~~ 119 (434)
T 4b4t_Q 86 MQFAK---------SK--TVKVLKTLIEKFEQV-----------------------------------PDSLDDQIFVCE 119 (434)
T ss_dssp HTSCH---------HH--HHHHHHHHHHHHCSC-----------------------------------CSCHHHHHHHHH
T ss_pred HHccc---------hH--HHHHHHHHHHHHHhC-----------------------------------CCCHHHHHHHHH
Confidence 43200 00 001111111112112 345688888888
Q ss_pred HHHHhCCCc----chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccC----cchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 541 QCLEACPPR----YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVL----PEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 541 ~al~~~p~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
+++...+.. ....++..+|.++...|++++|..++++++.... ......++...+..+...|++++|+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 120 KSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 888753321 1245888999999999999999999998876532 22345667777777788899999999999
Q ss_pred HHHHhCC---Ccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 613 RAIESLP---EEP--TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 613 ~al~~~p---~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
+++...| +.+ ...++...+.++...|++++|...|..+++.
T Consensus 200 ~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9987643 222 1235666777777889999999999888764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=87.34 Aligned_cols=156 Identities=7% Similarity=0.010 Sum_probs=116.5
Q ss_pred hhHHHHhcCCCChHHHHHHHHHhh------cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHH
Q psy6461 19 PYEEEILRNPFSVKHWLRYIEHKK------NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVN 92 (703)
Q Consensus 19 ~~e~~l~~~P~~~~~w~~~~~~~~------~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 92 (703)
+-++....-|.+.++|-.+.+-.. ..++.+|+.+|++|++.+|+....|..++.....................
T Consensus 182 e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 455666778999999999875443 24568999999999999999999887655544321111111112233333
Q ss_pred HHHHHH--HHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 93 NTFERS--LVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 93 ~~~~~a--l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
..++++ +...|.++.++..++..+...|++++|...+++|+..+|. ...|..++..+...|++++|+..|++++.
T Consensus 262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344432 2446999999999999888899999999999999999973 45566778888889999999999999999
Q ss_pred hCCCCHH
Q psy6461 171 LFPEDAE 177 (703)
Q Consensus 171 ~~p~~~~ 177 (703)
++|....
T Consensus 339 L~P~~~t 345 (372)
T 3ly7_A 339 LRPGANT 345 (372)
T ss_dssp HSCSHHH
T ss_pred cCCCcCh
Confidence 9998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=77.94 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYE 612 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (703)
+.|...|+++++.+|++ +.+|..+|.++...|++++|+..|++++...|.+ ...|..+...+...|++++|+..|+
T Consensus 2 ~~a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45788888888888887 5688888888888888888888888888888876 3455556666666778888888888
Q ss_pred HHHHhCCCcc
Q psy6461 613 RAIESLPEEP 622 (703)
Q Consensus 613 ~al~~~p~~~ 622 (703)
++++..|+..
T Consensus 78 ~al~~~~~~~ 87 (115)
T 2kat_A 78 SGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhccccc
Confidence 8877766543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=82.88 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=121.5
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-------c---------------CchhHHHHHHHHH-------Hhh-CCC-----
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-------N---------------APKAIINTIYERS-------LKE-LPG----- 62 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-------~---------------~~~~~a~~~~e~a-------l~~-~P~----- 62 (703)
+-+|-.+..+|.+...-...+..+. + .++.+|+.+|.|+ |.. .|.
T Consensus 53 k~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~ 132 (301)
T 3u64_A 53 KVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTREV 132 (301)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 5688889999999877666544332 1 1244666665543 443 242
Q ss_pred ------------------CH--HHHHHHHHHHHHhc-ccCCCCchhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhc
Q psy6461 63 ------------------SY--KLWYNYLKLRRKQV-KGKVITDPSYEDVNNTFERSLVFMHK--MPRIWLDYGRFLMDQ 119 (703)
Q Consensus 63 ------------------~~--~~w~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~ 119 (703)
++ -+|...+..-.... ++.-...+....|+..++||++.+|+ +..+|..++.++...
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 22 34544443322222 22233456788899999999999998 778999999999884
Q ss_pred -----cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh-cCChHHHHHHHHHHHhhCCCC-HHHHHHHHHhcCCHHHH
Q psy6461 120 -----HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS-HAVPETAVRVFRRYLKLFPED-AEDYIEYLSSIERLDEA 192 (703)
Q Consensus 120 -----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~A 192 (703)
|+.++|+..|+|||+++|. .+...+..|++++.. .|+.+.+.+.+++++..+|.. +. .-+.+.++-.+|
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~-~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~---~~lan~~~q~eA 288 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSA-HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH---NKLLVILSQKRA 288 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCT-TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS---CHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC---hhHHHHHHHHHH
Confidence 8999999999999999994 247888899999877 488999999999999988874 21 112233444555
Q ss_pred HHHHHH
Q psy6461 193 AVKLAY 198 (703)
Q Consensus 193 ~~~~~~ 198 (703)
..++.+
T Consensus 289 ~~LL~~ 294 (301)
T 3u64_A 289 RWLKAH 294 (301)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-07 Score=74.61 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=54.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 59 ELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 59 ~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
.+|+++.+|..++..+... |++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--------DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4677888887777776553 77888888888888888888888888888888888888888888888877663
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-06 Score=80.06 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=79.6
Q ss_pred hHHHhHhhcC-CCCchHHHHHHHHHHHHHHh---C---CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-----c
Q psy6461 498 KAYEKGIALF-KWPYIFDIWNTYLTKFLSRY---G---GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE-----H 565 (703)
Q Consensus 498 ~~~e~al~~~-~~~~~~~~~~~y~~~~~~~~---~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-----~ 565 (703)
.-++.++... +......+|..-+..-.... + .+....|+..++++++++|+......|..+|.++.. .
T Consensus 138 ~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g 217 (301)
T 3u64_A 138 QRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG 217 (301)
T ss_dssp HHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred hhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC
Confidence 4455555544 22334555555442211111 0 124578888999999999984334588888888887 4
Q ss_pred CChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHhCCCc
Q psy6461 566 GLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 566 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 621 (703)
|+.++|+..|++|+.++|+.. ......|..+++. .++.+.++..+++++...|..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~-id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHD-PDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTC-SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 888888888888888888531 2355566777665 377788888888888876653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.7e-07 Score=70.22 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHH
Q psy6461 29 FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPR 107 (703)
Q Consensus 29 ~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 107 (703)
.+...|..++..+. .+++++|...|+++++.+|.+...|..++..+... |++++|...|+++++.+|+++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--------GDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHhcCCCCHH
Confidence 34556666666555 66666666666666666666666666666555442 5666666666666666666666
Q ss_pred HHHHHHHHHHh
Q psy6461 108 IWLDYGRFLMD 118 (703)
Q Consensus 108 ~~~~~~~~~~~ 118 (703)
++..++.++..
T Consensus 79 ~~~~l~~~~~~ 89 (91)
T 1na3_A 79 AKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.1e-07 Score=78.69 Aligned_cols=135 Identities=7% Similarity=-0.063 Sum_probs=100.9
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
...+..++..+. .|++++|...|+++++..|... ..+..++..... .|++++|...|++++...+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--------LGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHH
Confidence 356677777777 8999999999999999877433 244555555443 3889999999999998865
Q ss_pred CC------HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcc----cccccHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q psy6461 104 KM------PRIWLDYGRFLMDQHKITQTRHVFDRALRALPIT----QHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFP 173 (703)
Q Consensus 104 ~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 173 (703)
.. ..++..++.++...|++++|...+++++...+.. .....+..++.++...|++++|+..++++++...
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 42 5678888899999999999999999998864321 1134456667777788888888888888876543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-07 Score=76.86 Aligned_cols=91 Identities=7% Similarity=-0.069 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC----
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM---- 105 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 105 (703)
.+.|..++.... .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++..|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL--------GEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHhCCCccHHH
Confidence 445555555555 56666666666666666666666666555554432 55666666666666666655
Q ss_pred --HHHHHHHHHHHHhccChHHHHHHH
Q psy6461 106 --PRIWLDYGRFLMDQHKITQTRHVF 129 (703)
Q Consensus 106 --~~~~~~~~~~~~~~~~~~~A~~~~ 129 (703)
..++..++.++...|+.+.|...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 555555555555555544444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=68.64 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 390 KLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
....+|..+|..+...|++++|+..|++++...|.++ .+|..++.++.+.|++++|+..|++++..+|++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------
Confidence 3567889999999999999999999999999999887 889999999999999999999999999999985
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
...+..++.++...
T Consensus 77 -----------~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 77 -----------AEAKQNLGNAKQKQ 90 (91)
T ss_dssp -----------HHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhc
Confidence 67777777766544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.5e-06 Score=75.43 Aligned_cols=125 Identities=14% Similarity=-0.011 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch----HHHHHHHHHHHHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRY----AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE----MFEMFNIYIKKAAE 600 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~ 600 (703)
.+++++|...++++++..+... ...++..+|.++...|++++|...+++++...+... ...++.........
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3455555555555555433211 012455555555555555555555555555433210 11223333333344
Q ss_pred hcCchHHHHHHHHHHHhCCCc---c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 601 IYGIPKTRQIYERAIESLPEE---P-TRQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~---~-~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.|++++|...++++++..+.. + ....+..++.++...|++++|...+++++++
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455555555555555442211 1 1123444455555555555555555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-07 Score=77.03 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc--
Q psy6461 64 YKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH-- 141 (703)
Q Consensus 64 ~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 141 (703)
...|...+..... .|++++|...|+++++..|+++.+|..++.++...|++++|...|+++++..|.+..
T Consensus 4 ~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFK--------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 4556666655443 378888888888888888888888888888888888888888888888888884211
Q ss_pred --cccHHHHHHHHHhcCChHHHHHH
Q psy6461 142 --HRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
..++..++..+...|+.+.|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 33444455555555555444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=84.56 Aligned_cols=158 Identities=12% Similarity=0.034 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCC---------hHHHHHHHHHHhhcc--CcchHHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGL---------ARHAMAVYERATGAV--LPEEMFEMFNIYIKK 597 (703)
Q Consensus 531 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~---------~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~ 597 (703)
++++|+++|+++.+. .|+ ...|..+...+...|. .++|..+|++..... |+ ...|...+..
T Consensus 41 ~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~tyn~lI~~ 114 (501)
T 4g26_A 41 DVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EATFTNGARL 114 (501)
T ss_dssp CHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHH
Confidence 346666666666654 233 2345445444433322 455666666554432 32 3456666666
Q ss_pred HHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCC
Q psy6461 598 AAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGN 675 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~ 675 (703)
+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|..+|+...+. .-..+..+|+.+...+...|.
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCC
Confidence 66666666666666666554 233 224556666666666666666666665543 111135666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q psy6461 676 EDTMREMLRIKRSVQAQYNTQVLF 699 (703)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~ 699 (703)
.++|.++++..|....+|+ +.||
T Consensus 191 ~d~A~~ll~~Mr~~g~~ps-~~T~ 213 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQVS-KSTF 213 (501)
T ss_dssp HHHHHHHHHHHHHHTSSBC-HHHH
T ss_pred HHHHHHHHHHHHHhCCCcC-HHHH
Confidence 6666666666665554444 3444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-05 Score=83.05 Aligned_cols=187 Identities=11% Similarity=0.099 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCC
Q psy6461 431 TVWCEWAELELRAGQEEAALRLMARATA--TPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFK 508 (703)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~ 508 (703)
.++......+.+.|++++|..+|++..+ ..|+ ...|+.++..+...+.. ..+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd------------------~~tyn~Li~~c~~~~~~---~~~----- 80 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS------------------QYHYNVLLYVCSLAEAA---TES----- 80 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC------------------HHHHHHHHHHHTTCCCC---SSS-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------------------HhHHHHHHHHHHhCCch---hhh-----
Confidence 4567777888899999999999999875 4554 56677777666554432 000
Q ss_pred CCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCc
Q psy6461 509 WPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGA--VLP 584 (703)
Q Consensus 509 ~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~ 584 (703)
...+.+++|.++|+++... .|+ ...|..++..+.+.|+.++|..+|++..+. .|+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 139 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPN---EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR 139 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Confidence 0122358899999998875 455 468999999999999999999999988765 344
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc-CCCCChH
Q psy6461 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC-DPRVTAG 661 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~ 661 (703)
...|...+..+.+.|++++|..+|+.+.+. .|+ ...+..++..+.+.|+.++|..++++..+.. .| +..
T Consensus 140 ---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~ 211 (501)
T 4g26_A 140 ---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE---EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKS 211 (501)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHH
T ss_pred ---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHH
Confidence 568899999999999999999999999986 354 3478899999999999999999999987642 23 466
Q ss_pred hHHHHHHHHHH
Q psy6461 662 FWAAWKSFEIT 672 (703)
Q Consensus 662 ~~~~~~~~~~~ 672 (703)
+++........
T Consensus 212 T~~~l~~~F~s 222 (501)
T 4g26_A 212 TFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 77666655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=70.62 Aligned_cols=73 Identities=7% Similarity=0.084 Sum_probs=65.5
Q ss_pred hcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 101 FMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 101 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
.+|+++.+|..+|.++...|++++|...|+++++.+| ....+|..++.++...|++++|+..|+++++..|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999 457899999999999999999999999999886643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-06 Score=68.97 Aligned_cols=80 Identities=9% Similarity=0.007 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPR-IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRV 164 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 164 (703)
|++++|...|+++++..|+++. +|..+|.++...|++++|...|+++++.+|. +..+|.. +...++...
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~--------~~~~~a~~~ 83 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQAR--------KMVMDILNF 83 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHH--------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHH--------HHHHHHHHH
Confidence 7888899999999999998888 9999999998899999999999999998884 3444422 234666777
Q ss_pred HHHHHhhCCCC
Q psy6461 165 FRRYLKLFPED 175 (703)
Q Consensus 165 ~~~~l~~~p~~ 175 (703)
|++++..+|++
T Consensus 84 ~~~~~~~~p~~ 94 (99)
T 2kc7_A 84 YNKDMYNQLEH 94 (99)
T ss_dssp HCCTTHHHHCC
T ss_pred HHHHhccCccc
Confidence 77776666654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=68.41 Aligned_cols=87 Identities=10% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHhh-cCchhHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy6461 36 RYIEHKK-NAPKAIINTIYERSLKELPGSYK-LWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYG 113 (703)
Q Consensus 36 ~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 113 (703)
..+.... .|++++|...|+++++.+|.+.. .|..++..+... |++++|...|+++++.+|+++.+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~-- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL--------GDWQKALNNYQSAIELNPDSPALQAR-- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCcHHHHHH--
Confidence 3455555 89999999999999999999999 999999887765 89999999999999999999988743
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+.+.++...|++++...|.
T Consensus 75 ------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 ------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ------HHHHHHHHHHCCTTHHHHC
T ss_pred ------HHHHHHHHHHHHHhccCcc
Confidence 5667788888888887774
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-05 Score=77.00 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=99.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---c-----Ch
Q psy6461 51 TIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ---H-----KI 122 (703)
Q Consensus 51 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~-----~~ 122 (703)
...+++...-|.+.+.|..|++....... ....+..+|+.+|++|++.+|+.+.+|..++.++... + ..
T Consensus 181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~---~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKILPHRGALLTNFYQAHDYLLH---GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHHSCSSGGGHHHHHHHHHHHHH---CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 34556778889999999888866432211 1235678999999999999999999998777766421 1 11
Q ss_pred HHHHHHHHHHH--HhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 123 TQTRHVFDRAL--RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 123 ~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
......++++. ...| ..+.++..++......|+++.|+..+++++.++|+
T Consensus 258 ~~l~~a~~a~~a~~~~~--~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-------------------------- 309 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELN--NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------------------------- 309 (372)
T ss_dssp HHHHHHHHHHHTCGGGT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--------------------------
T ss_pred HHHHHHHHHHHhcccCC--cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------------------------
Confidence 11222222211 1223 23444444444444456666666666666655532
Q ss_pred cccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHh
Q psy6461 201 NKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQ 280 (703)
Q Consensus 201 ~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 280 (703)
...|..+|..+.-.|++++|.+.|++++.
T Consensus 310 ---------------------------------------------------~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 310 ---------------------------------------------------WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 13567778888899999999999999999
Q ss_pred hcCCcc
Q psy6461 281 TVTTVR 286 (703)
Q Consensus 281 ~~~~~~ 286 (703)
..|...
T Consensus 339 L~P~~~ 344 (372)
T 3ly7_A 339 LRPGAN 344 (372)
T ss_dssp HSCSHH
T ss_pred cCCCcC
Confidence 988754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=63.91 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHHHHHHhccC---hHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 102 MHKMPRIWLDYGRFLMDQHK---ITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 102 ~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
+|+++.+|..++.++...++ .++|+.+++++|+.+| .++..+..++..+...|++++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976554 7999999999999999 458888888999889999999999999999999984
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=62.89 Aligned_cols=74 Identities=7% Similarity=-0.137 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 60 LPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 60 ~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
+|.++++|..++..+..... ....++|...++++++.+|+++..+..+|..++..|++++|...+++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~-----~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK-----QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 69999999999988753211 123689999999999999999999999999999999999999999999999994
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00018 Score=75.86 Aligned_cols=126 Identities=11% Similarity=0.014 Sum_probs=89.0
Q ss_pred CCCChhHHHHHHHHHHHhC-----CCcc-hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc-----Ccch-HHHHHHHHH
Q psy6461 528 GGTKLERARDLFEQCLEAC-----PPRY-AKTLYLLYAKLEEEHGLARHAMAVYERATGAV-----LPEE-MFEMFNIYI 595 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~~ 595 (703)
..|++++|+.++++++++. |++. ...++.++|.++...|++++|..++++++... |+++ ....+...+
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4678899999999999863 4442 13578889999999999999999999988653 3332 223445556
Q ss_pred HHHHHhcCchHHHHHHHHHHHh-----CCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 596 KKAAEIYGIPKTRQIYERAIES-----LPEEPTR-QMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
..+..+|++++|+.+|++|++. .|++|.+ .+...++..+..+|.+++|...|.+|.+-
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666678888888888888864 5676642 24445556666777788888888777653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00024 Score=75.03 Aligned_cols=128 Identities=9% Similarity=0.083 Sum_probs=99.4
Q ss_pred HHHcCChHHHHHHHHHHhhcc-----Ccch-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHh-----CCCcch-HHHHHH
Q psy6461 562 EEEHGLARHAMAVYERATGAV-----LPEE-MFEMFNIYIKKAAEIYGIPKTRQIYERAIES-----LPEEPT-RQMCLK 629 (703)
Q Consensus 562 ~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-~~~~~~ 629 (703)
+...|++++|..++++++... |++. ....+...+..+..+|++++|..+++++|+. .|++|. ...+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 447899999999999998763 3332 3456667777788899999999999999975 577775 336678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccc----CCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQIC----DPRVT---AGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
+|.++..+|++++|..+|++|+++. .++ + ..+...+.......|.+..++.++..+|...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998762 344 3 3444555566666788999999998888744
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0002 Score=61.15 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=80.9
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHhC-CcccccccHHHHHHHHHhcCChH
Q psy6461 84 TDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH---KITQTRHVFDRALRAL-PITQHHRVWPLYLSFVKSHAVPE 159 (703)
Q Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 159 (703)
..+....+++.|.+.+...|.+..+.+.|+.++.... +++++..+|+..++.. |. .+.+.+..++-.+.+.++++
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHH
Confidence 3466788999999999999999999999999999987 6679999999999988 63 34566666677778999999
Q ss_pred HHHHHHHHHHhhCCCCHHH
Q psy6461 160 TAVRVFRRYLKLFPEDAED 178 (703)
Q Consensus 160 ~A~~~~~~~l~~~p~~~~~ 178 (703)
+|++.++++++.+|++..+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00066 Score=58.16 Aligned_cols=111 Identities=7% Similarity=-0.031 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD----Q 119 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~ 119 (703)
.++++|...|+++.+..+.... ++.++. ..+.+++|...|+++.+. +++..+..++.++.. .
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~--------~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 74 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSN--------SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVK 74 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTC--------TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHH--------cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC
Confidence 4678888888888887644443 333221 124566788888888876 677888888888877 7
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh----cCChHHHHHHHHHHHhhC
Q psy6461 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS----HAVPETAVRVFRRYLKLF 172 (703)
Q Consensus 120 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~ 172 (703)
+++++|...|+++.+.. ++..+..++.++.. .+++++|+..|+++.+..
T Consensus 75 ~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 75 KDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 78888888888888752 25667777777776 677888888888887753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00055 Score=58.66 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPK 606 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~ 606 (703)
++++|...|+++.+..+.. .. ++.++...+..++|+..|+++.+..... .+.....++.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~----a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF----GC--LSLVSNSQINKQKLFQYLSKACELNSGN----GCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCCCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHH----HHHHHHHHHHcCCCCCccHHH
Confidence 4589999999999986443 33 8888888889999999999999874432 23333444444 578999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccc
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~ 654 (703)
|...|+++.+. .+ +..+..++.++.. .+++++|..+|++|.+..
T Consensus 80 A~~~~~~Aa~~--g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL--ND--QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT--TC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CC--HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999987 33 3378888999988 899999999999999873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00046 Score=58.94 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcc-CcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG---LARHAMAVYERATGAV-LPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
+..+++.|.+.+...|.+ ..+.+.||..+.+.+ +.++++.+++..++.. |.+..-.+|.. .-.+.+.+++++|
T Consensus 14 l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L-Av~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL-AVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH-HHHHHHccCHHHH
Confidence 467899999999887766 689999999999988 6669999999999988 63322233332 2233578999999
Q ss_pred HHHHHHHHHhCCCcchH
Q psy6461 608 RQIYERAIESLPEEPTR 624 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~ 624 (703)
+..++++|+..|++..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 99999999999988764
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0072 Score=52.15 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=83.2
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6461 499 AYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLE-RARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYER 577 (703)
Q Consensus 499 ~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 577 (703)
.||..|......+....|..|+.+....+..+..+ .-..++++|++...++.. |
T Consensus 5 ~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~---Y---------------------- 59 (164)
T 2wvi_A 5 AFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKR---Y---------------------- 59 (164)
T ss_dssp HHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGG---G----------------------
T ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhh---h----------------------
Confidence 46666665455667888888888777766543322 345677777776544310 0
Q ss_pred HhhccCcch-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 578 ATGAVLPEE-MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 578 al~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
-+|. -+.+|..|+.+. +.++.+|..+....-....+.+|..||.++...|++.+|..+|+++++.. -
T Consensus 60 -----knD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~-A 127 (164)
T 2wvi_A 60 -----YSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK-A 127 (164)
T ss_dssp -----TTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C
T ss_pred -----ccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 0010 123444444432 34666677666665444456689999999999999999999999998863 2
Q ss_pred CCChHhHHHHHHHHHH
Q psy6461 657 RVTAGFWAAWKSFEIT 672 (703)
Q Consensus 657 ~~~~~~~~~~~~~~~~ 672 (703)
.....+-..+..|...
T Consensus 128 ~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 128 EPLERLQSQHRQFQAR 143 (164)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 2135566666666543
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0016 Score=55.34 Aligned_cols=133 Identities=12% Similarity=0.101 Sum_probs=92.2
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc---CChHHHHHHHHHHhhccCcchH-------HHHHHHHHHHHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEH---GLARHAMAVYERATGAVLPEEM-------FEMFNIYIKKAAE 600 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~~ 600 (703)
....+++.|+..+.....+.+...|..|+...... |. ..-..+++++++.+.++.. +.+|..|++
T Consensus 5 ~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~---- 79 (152)
T 4a1g_A 5 TPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAE---- 79 (152)
T ss_dssp HHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHT----
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH----
Confidence 45677888888888754443457888888876542 43 3467788899888866431 345555543
Q ss_pred hcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHH
Q psy6461 601 IYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEI 671 (703)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 671 (703)
..++++.+|..+....-....+.++..||.++.+.|++++|..+|+++++.. -.....+-..+..|..
T Consensus 80 --~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~-A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 80 --YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ-AEPREFLQQQYRLFQT 147 (152)
T ss_dssp --TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSHHHHHHHHHHHHH
T ss_pred --hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHH
Confidence 3566888998888776555566789999999999999999999999998863 2212455555555554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00078 Score=69.84 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-----CCCCcchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-----PYTKVEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~ 438 (703)
|++++|...|++++....... ..+.....+.++|.+|...|++++|+.+|++++.+ .|.++ .....++.+|.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-NVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHH
Confidence 788999999999988632221 12345677888999999999999999999999876 46665 55677999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC
Q psy6461 439 LELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~ 459 (703)
++..+|++++|..+|++|+++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999864
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0069 Score=51.46 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHHc
Q psy6461 568 ARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEI---YGIPKTRQIYERAIESLPEEP-------TRQMCLKFAEMETKL 637 (703)
Q Consensus 568 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~ 637 (703)
...+++.||..+.....+++..+|.-|+....+. |. ..-..++++|++.+.+++ ...+|+.|+++ .
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~ 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---N 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---B
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---c
Confidence 4556778888888777777888888888887652 22 335678888887765433 24588888775 2
Q ss_pred CCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy6461 638 GEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693 (703)
Q Consensus 638 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 693 (703)
+.++.+|+......=....+.+|..|+.+....|+..+|.+|++....-.++|
T Consensus 82 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33777777766543233368889999999988899999988887665544444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0048 Score=54.91 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHhhccCcch-------HHHHHHH
Q psy6461 531 KLERARDLFEQCLEA---CPPRYAKTLYLLYAKLEEEH---GLA---RHAM-AVYERATGAVLPEE-------MFEMFNI 593 (703)
Q Consensus 531 ~~~~A~~~~~~al~~---~p~~~~~~~~~~~a~~~~~~---g~~---~~A~-~~~~~al~~~p~~~-------~~~~~~~ 593 (703)
.+.+.|+.|++.+.. ..++ +...|..|+...... |.. ..-. .++++++..+.++. -+.+|..
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dD-PL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDD-PLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSC-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCC-chHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 367889999999988 3444 357899998875432 332 2234 79999999887653 2467777
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH
Q psy6461 594 YIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT 672 (703)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 672 (703)
|+.+.. ..+..+++.+|.-+....-....+.+|..||.++...|++.+|..+|+++++..- .....+-..+..|...
T Consensus 86 Ya~~~~-~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A-~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 86 YINLFL-SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC-RPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BSHHHHHHHHHHHHHH
T ss_pred HHHhhc-ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHHH
Confidence 777651 2236699999999998866666677999999999999999999999999998742 2135566666666643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0017 Score=67.23 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=36.7
Q ss_pred HhcCchHHHHHHHHHHHh-----CCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy6461 600 EIYGIPKTRQIYERAIES-----LPEEPT-RQMCLKFAEMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 600 ~~~~~~~A~~~~~~al~~-----~p~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.+|++++|..+++++|+. .|++|. ...+..+|.++..+|++++|..+|++|+++
T Consensus 352 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 352 YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 334444444444444432 456654 236678899999999999999999999886
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0022 Score=51.57 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCC-----cccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALP-----ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAED 178 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 178 (703)
++.-.+.+|..+...+++..|...|+.|++..+ ......++..++..+.+.|+++.|+..++++++..|++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 556778899999999999999999999999742 11346778888889999999999999999999999999754
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.01 Score=53.85 Aligned_cols=131 Identities=14% Similarity=0.241 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHh--CCCcchHHHHHHHHHHHHHc---CC--hHHHHHHHHHHhhccCcch-------HHHHHHHHHHH
Q psy6461 532 LERARDLFEQCLEA--CPPRYAKTLYLLYAKLEEEH---GL--ARHAMAVYERATGAVLPEE-------MFEMFNIYIKK 597 (703)
Q Consensus 532 ~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~---g~--~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~ 597 (703)
.++.+..|+..|.. ..++ +...|..|+...... |. -..-..+++++++.+.++. -+.+|..|+.+
T Consensus 51 l~~~r~~fE~~i~~~~~~dD-PL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDD-PLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSC-THHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCC-ChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 36778888888875 2333 246888888765542 32 2235678888888765542 24577777753
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHH
Q psy6461 598 AAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFE 670 (703)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 670 (703)
.+.++.+|..+....-....+.+|..||.++...|++.+|..+|+++++..- .....+-..+..|.
T Consensus 130 ------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A-~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 130 ------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA-KPFLRFQQKYQQFT 195 (223)
T ss_dssp ------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-BSHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHH
Confidence 4678899999998766555677999999999999999999999999998731 21244555555554
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.019 Score=51.10 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=88.2
Q ss_pred hHHHhHhhc--CCCCchHHHHHHHHHHHHHHhCCCCh---hHHH-HHHHHHHHhCCCcc-------hHHHHHHHHHHHHH
Q psy6461 498 KAYEKGIAL--FKWPYIFDIWNTYLTKFLSRYGGTKL---ERAR-DLFEQCLEACPPRY-------AKTLYLLYAKLEEE 564 (703)
Q Consensus 498 ~~~e~al~~--~~~~~~~~~~~~y~~~~~~~~~~~~~---~~A~-~~~~~al~~~p~~~-------~~~~~~~~a~~~~~ 564 (703)
+.||+.|.. ....+-...|..|+.+....+..|.. ..-. .++++|++..-++. -..+|+.|+.+. .
T Consensus 13 ~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~ 91 (202)
T 3esl_A 13 IAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-L 91 (202)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-c
Confidence 567777776 55667889999999888887743332 1234 78899888765541 125888888865 3
Q ss_pred cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC
Q psy6461 565 HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESL 618 (703)
Q Consensus 565 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (703)
.++..++..+|.-.....-......+|..|+.++...|++.+|..+|+.+++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455778888888777666555456788899999888899999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0057 Score=49.14 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-----hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch
Q psy6461 552 KTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE-----EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT 623 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (703)
+.-++.+|......|++..|..-|+.|++..+.+ ....++..+...+.+.|+++.|..+++++++..|+++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3456778888888888888888888887754221 23344444555555555666666666666666665543
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0038 Score=53.89 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=83.1
Q ss_pred HHHHHHhhccCcchHHHHHHHHHHHHHHh---cCc-hHHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHHcCCHH
Q psy6461 573 AVYERATGAVLPEEMFEMFNIYIKKAAEI---YGI-PKTRQIYERAIESLPEEP-------TRQMCLKFAEMETKLGEID 641 (703)
Q Consensus 573 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~-~~A~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~g~~~ 641 (703)
+.|+..+.....+++..+|..||...... |+. ..-..++++|+..+-+++ ...+|+.|+++ +++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~~-- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CNE-- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CSC--
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cCC--
Confidence 45777777666677788999999887662 222 234678999998876443 24599999987 344
Q ss_pred HHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q psy6461 642 RARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 642 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 694 (703)
++.+|....+..=....+.+|..|+.+....|+..+|.+|+.....-.++|.
T Consensus 79 -p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 -PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp -HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred -HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 6677777655422333699999999999999999999999976655444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.013 Score=60.63 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=64.0
Q ss_pred HcCChHHHHHHHHHHhhcc-----Ccch-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHh-----CCCcch-HHHHHHHH
Q psy6461 564 EHGLARHAMAVYERATGAV-----LPEE-MFEMFNIYIKKAAEIYGIPKTRQIYERAIES-----LPEEPT-RQMCLKFA 631 (703)
Q Consensus 564 ~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-~~~~~~~a 631 (703)
..|++++|..++++++... |++. ...++...+..+...|++++|..+++++|+. .|++|. ...+..+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 5677777777777777542 3332 2344555555566677888888888888754 466664 23567888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc
Q psy6461 632 EMETKLGEIDRARAIYAHCSQI 653 (703)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~a~~~ 653 (703)
.++..+|++++|...|++|+++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999876
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.014 Score=47.79 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHH---HHHHHHHHhhcc-CcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARH---AMAVYERATGAV-LPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
+..++..|.+.+...+.+ ....+.||..+.+..+... ++.+++..++.. |......+|.. .....+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L-Avg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL-AVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH-HHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHHHhhhHHHH
Confidence 367888999988877655 6789999999998887766 889999988876 43333333322 2233468899999
Q ss_pred HHHHHHHHHhCCCcchHHHH
Q psy6461 608 RQIYERAIESLPEEPTRQMC 627 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~ 627 (703)
+..++.+|+..|++..+...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999998764333
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0092 Score=54.09 Aligned_cols=120 Identities=11% Similarity=0.173 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhhc-cCcchHHHHHHHHHHHHHHh---cC--chHHHHHHHHHHHhCCCcch-------HHHHHHHHHHH
Q psy6461 568 ARHAMAVYERATGA-VLPEEMFEMFNIYIKKAAEI---YG--IPKTRQIYERAIESLPEEPT-------RQMCLKFAEME 634 (703)
Q Consensus 568 ~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~---~~--~~~A~~~~~~al~~~p~~~~-------~~~~~~~a~~~ 634 (703)
.+..+..|+..+.. ...+++..+|.-|+...... |. -..-..++++|+..+-+++. ..+|+.|+++
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~- 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY- 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc-
Confidence 45667778888766 34456689999999988773 32 22357899999998765542 4599999885
Q ss_pred HHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy6461 635 TKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQY 693 (703)
Q Consensus 635 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 693 (703)
+ +.++.+|.......=....+.+|..|+.+....|.+.+|.+|++....-.++|
T Consensus 130 --~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 --I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp --C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred --c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3 46677777766543233369999999999999999999999997555544433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.004 Score=64.58 Aligned_cols=93 Identities=12% Similarity=-0.057 Sum_probs=76.0
Q ss_pred CCchhHHHHHHHHHHhcCCCc--cCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhcc-----CCCCcchHHHHHHHHHH
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKL--AVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLV-----PYTKVEDLATVWCEWAE 438 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~ 438 (703)
|++++|+..|++++....... ..+.....+..++..|...|++++|+.++++++.+ .|.+| .....++.+|.
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~l~nLa~ 379 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-VRGVQVMKVGK 379 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-HHHHHHHHHHH
Confidence 888999999999987632221 12345678888899999999999999999999876 46665 55677999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC
Q psy6461 439 LELRAGQEEAALRLMARATAT 459 (703)
Q Consensus 439 ~~~~~~~~~~A~~~~~~a~~~ 459 (703)
++..+|++++|..++++|+++
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999864
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.037 Score=45.33 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHH---HHHHHHHHHHhC-CcccccccHHHHHHHHHhcCChHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQ---TRHVFDRALRAL-PITQHHRVWPLYLSFVKSHAVPETA 161 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 161 (703)
..+..++..|.+.+...+.+....+.|+-.+....+... +..+++..+... |. ........++-.+.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHHHH
Confidence 456678899999998888899999999999999776554 889999988876 52 2233334445555689999999
Q ss_pred HHHHHHHHhhCCCCHHH
Q psy6461 162 VRVFRRYLKLFPEDAED 178 (703)
Q Consensus 162 ~~~~~~~l~~~p~~~~~ 178 (703)
++.++..|+..|++..+
T Consensus 94 ~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 99999999999999754
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.79 E-value=2.8 Score=42.19 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHH
Q psy6461 253 HLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLE 332 (703)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (703)
.+...+|..|...|+.++...++.......+..... ..+..-+.+ ++.+... +...+.........++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka-----k~~k~v~~l----~~~~~~~---~~~~~~~~~~~~~~~~ 87 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA-----KAAKLVRSL----VDMFLDM---DAGTGIEVQLCKDCIE 87 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH-----HHHHHHHHH----HHHHTTS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH-----HHHHHHHHH----HHHHhcC---CCcHHHHHHHHHHHHH
Confidence 578899999999999999888887654433222111 001111111 1111111 1122333444444444
Q ss_pred HHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHH
Q psy6461 333 DLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLED 410 (703)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 410 (703)
-.-..+-.|+.. ..=.+++.++ .|++.+|.+.+.+..+.+...+......+++..-.++|...+++.+
T Consensus 88 ~a~~~~r~flr~----------~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k 157 (394)
T 3txn_A 88 WAKQEKRTFLRQ----------SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPK 157 (394)
T ss_dssp HHHHTTCHHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHH
Confidence 433322222221 0001234433 3999999999998888765433223456788888899999999999
Q ss_pred HHHHHHHhhccC---CCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcCC
Q psy6461 411 ARLIFDKATLVP---YTKVEDLATVWCEWAELEL-RAGQEEAALRLMARATATP 460 (703)
Q Consensus 411 A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~ 460 (703)
++..|.++.... +.+|.....+...-|.+++ ..+++.+|...|-.++...
T Consensus 158 ~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 158 ARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 999999986652 2333344567777778888 8999999999999887543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.39 Score=40.00 Aligned_cols=91 Identities=9% Similarity=-0.060 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCh---HHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLA---RHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
...++.|++-.. + ..++...+.||..+.+..+. .+++.+++..+...|...+..+|..-+.. .+.|++++|+.
T Consensus 23 ~~lr~qY~~E~~--~-~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~-ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 23 EILRQQVVSEGG--P-TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGC-YKLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHTTS--T-TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH-HTTTCHHHHHH
T ss_pred HHHHHHHHHhcc--C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH-HHhhhHHHHHH
Confidence 455555554322 1 22367899999999888765 46788899888887765444444333322 35789999999
Q ss_pred HHHHHHHhCCCcchHHHH
Q psy6461 610 IYERAIESLPEEPTRQMC 627 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~~~ 627 (703)
..+.+|+..|++..+...
T Consensus 99 y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 99 YVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHH
Confidence 999999999988764333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.76 Score=37.74 Aligned_cols=89 Identities=9% Similarity=-0.041 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCh---HHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHH
Q psy6461 533 ERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLA---RHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQ 609 (703)
Q Consensus 533 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (703)
...++.|++=+. ++.++...+.||..+.+..+. .+++.+++..++..|...+..+|..-+. ..+.|++++|+.
T Consensus 24 ~~l~~qy~~E~~---~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg-~yklgdY~~Ar~ 99 (134)
T 3o48_A 24 EILRQQVVSEGG---PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG-CYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHTTG---GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred HHHHHHHHHHhC---CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH-HHHhhhHHHHHH
Confidence 445555554332 222357888999888887754 4678888888887775544334333232 235789999999
Q ss_pred HHHHHHHhCCCcchHH
Q psy6461 610 IYERAIESLPEEPTRQ 625 (703)
Q Consensus 610 ~~~~al~~~p~~~~~~ 625 (703)
..+.+|+..|++..+.
T Consensus 100 y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 100 YVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHTTCTTCHHHH
T ss_pred HHHHHHhhCCCCHHHH
Confidence 9999999999887643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.3 Score=54.89 Aligned_cols=123 Identities=14% Similarity=0.053 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh-----ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh--CCCcchHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATG-----AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES--LPEEPTRQ 625 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 625 (703)
..+..+.+.+.+.|+.++|..+|+...+ ..|+ +..|+..|.-+++.|++++|..+|+++.+. .|| +.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vv 201 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LL 201 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HH
Confidence 4788899999999999999999987543 2344 568999999999999999999999999886 354 33
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHhcc-cCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy6461 626 MCLKFAEMETKLGE-IDRARAIYAHCSQI-CDPRVTAGFWAAWKSFEITHGNEDTMREMLRIKRSVQ 690 (703)
Q Consensus 626 ~~~~~a~~~~~~g~-~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 690 (703)
.+..+++.+.+.|+ .++|..+++...+. +.|+ ..+++... +.++-..++++.|++.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD--~vtY~~ll-------~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ--ALFTAVLL-------SEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSH--HHHHHSCC-------CHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC--hhhccccc-------ChhhHHHHHHHHHHhC
Confidence 68888888888898 47899999998765 2333 44444322 3344445666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.51 E-value=2.5 Score=42.55 Aligned_cols=94 Identities=15% Similarity=-0.037 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHcCChHHHHHHHHHHhhcc----Ccc-hHHHHHHHHHHHH
Q psy6461 528 GGTKLERARDLFEQCLEACPP----RYAKTLYLLYAKLEEEHGLARHAMAVYERATGAV----LPE-EMFEMFNIYIKKA 598 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~-~~~~~~~~~~~~~ 598 (703)
..|++.+|.+++.+.++.+.. ....++++.-++++...|++.+++..+.+|.... +++ ....+...-+.+.
T Consensus 111 ~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~ 190 (394)
T 3txn_A 111 DTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILH 190 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHH
Confidence 367889998888888876433 1124677888888888899999999998886543 221 1223333344444
Q ss_pred H-HhcCchHHHHHHHHHHHhCCCc
Q psy6461 599 A-EIYGIPKTRQIYERAIESLPEE 621 (703)
Q Consensus 599 ~-~~~~~~~A~~~~~~al~~~p~~ 621 (703)
. ..+++..|...|-.+++.+.+.
T Consensus 191 l~~~rdyk~A~~~F~eaf~~f~~~ 214 (394)
T 3txn_A 191 AADERDFKTAFSYFYEAFEGFDSV 214 (394)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCHHHHHHHHHHHHhccccc
Confidence 5 5788899998888888876643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.33 Score=54.59 Aligned_cols=100 Identities=10% Similarity=-0.035 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-----hCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLE-----ACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
....+..++..++.. |++++|..+|..+.+ ..|+ ...|..++.-+.+.|+.++|..+|+......-..+
T Consensus 126 ~~~TynaLIdglcK~---G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLT---DQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 456788888877764 789999999988654 2455 57899999999999999999999999876542211
Q ss_pred HHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhC
Q psy6461 587 MFEMFNIYIKKAAEIYGI-PKTRQIYERAIESL 618 (703)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~ 618 (703)
...|+..|..+.+.|+. ++|..+|+.+....
T Consensus 200 -vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 200 -LLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 56888999988888875 68899999999874
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.41 Score=52.60 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHhhc--------cCcch--------HHHHHHHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHG-LARHAMAVYERATGA--------VLPEE--------MFEMFNIY 594 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~--------~p~~~--------~~~~~~~~ 594 (703)
.+.|+.++++..+..|... ......+..+....+ .--+|++++.++++. .+.+. ...+...=
T Consensus 265 ~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 4889999999999999752 112222322222222 233566666666542 11111 12244455
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
..|++..|+++-|..+.++|+...|+... .|..++.+|..+|+++.|.-.+..|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~--tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFE--SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhH--HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 67777889999999999999999999876 8999999999999999999998877
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.31 E-value=2.2 Score=48.06 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|+++.|.++.+ ..+++..|..++......++++.|.+.|.++=. +..+..++...|+.+...++-
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHH
Confidence 44554544432 235677777777777777777777777776411 333444444455554443333
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHh
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~ 199 (703)
+.+... . ....-...+...|++++|+++|.+.
T Consensus 731 ~~a~~~-~-~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G-KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T-CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C-chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333321 1 1112223344566666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.16 E-value=3.5 Score=46.37 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred HhccChHHHHH-HHHHHHHhCC-cccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHH
Q psy6461 117 MDQHKITQTRH-VFDRALRALP-ITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAV 194 (703)
Q Consensus 117 ~~~~~~~~A~~-~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~ 194 (703)
...+++++|.+ ++ ...| . ......+.++...|.++.|.+..+ +...-..+....|++++|.+
T Consensus 610 ~~~~~~~~a~~~~l----~~i~~~----~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVL----PNVEGK----DSLTKIARFLEGQEYYEEALNISP--------DQDQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTG----GGCCCH----HHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHH----hcCCch----HHHHHHHHHHHhCCChHHheecCC--------CcchheehhhhcCCHHHHHH
Confidence 34677777655 33 1123 2 112666777778888887776542 22233556678899998887
Q ss_pred HHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHH
Q psy6461 195 KLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDI 274 (703)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 274 (703)
+...+ .....|..+|..+.+.++++.|...
T Consensus 674 ~~~~~--------------------------------------------------~~~~~W~~la~~al~~~~~~~A~~~ 703 (814)
T 3mkq_A 674 LLTDE--------------------------------------------------SAEMKWRALGDASLQRFNFKLAIEA 703 (814)
T ss_dssp HHTTC--------------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhh--------------------------------------------------CcHhHHHHHHHHHHHcCCHHHHHHH
Confidence 75432 1136899999999999999999999
Q ss_pred HHHH
Q psy6461 275 YEEA 278 (703)
Q Consensus 275 ~~~~ 278 (703)
|.++
T Consensus 704 y~~~ 707 (814)
T 3mkq_A 704 FTNA 707 (814)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9984
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.84 E-value=1.7 Score=40.60 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH-HHHHHHHHHHHHHhcCchH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM-FEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~ 606 (703)
..++++++++.....++.+|.+ ......+.+++.-.|++++|.+-++-+.+.+|.... ..+|...|..+..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~d--a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~------ 80 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA------ 80 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH------
T ss_pred hCCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH------
Confidence 5678899999999999999999 679999999999999999999999999999998642 2344555544432
Q ss_pred HHHHHHHHHH-----hCCCcchHHHHHH---HHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 607 TRQIYERAIE-----SLPEEPTRQMCLK---FAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 607 A~~~~~~al~-----~~p~~~~~~~~~~---~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
|. +.+. ..+..+. -|+. -+......|+.++|..+-.+|.+..|.
T Consensus 81 -R~---~vfaG~~~P~~~g~~~--~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 81 -RK---DFAQGAATAKVLGENE--ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -HH---HHTTSCCCEECCCSCH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -HH---HHHcCCCCCCCCCCCH--HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 21 1221 1233333 3443 234445679999999999999887543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.4 Score=41.18 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHhccChHHHHHHHHHHHHh
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP---------RIWLDYGRFLMDQHKITQTRHVFDRALRA 135 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 135 (703)
+.|+.|+-+.+.++....+++ .+...+|+.++.++++.+|...|++||+.
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 789999999988777643222 46778899999999999999999999875
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.9 Score=37.30 Aligned_cols=91 Identities=5% Similarity=-0.091 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccC---hHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHK---ITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
.+....++.|++-+.-.| ++...+.|+-.+....+ ...+..+++..++..|.. ....+..++--+.+.|++++|+
T Consensus 21 eeL~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 21 QQLEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp HHHHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHH
Confidence 455566777766443334 78999999998888654 457899999999988842 3444444455555899999999
Q ss_pred HHHHHHHhhCCCCHHH
Q psy6461 163 RVFRRYLKLFPEDAED 178 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~ 178 (703)
+..+..|+..|++..+
T Consensus 99 ~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 99 RYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHTTCTTCHHH
T ss_pred HHHHHHHhhCCCCHHH
Confidence 9999999999999753
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.95 E-value=1.3 Score=48.77 Aligned_cols=123 Identities=8% Similarity=0.007 Sum_probs=84.2
Q ss_pred HHHHhh-cCc-hhHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh-------cC-CC
Q psy6461 37 YIEHKK-NAP-KAIINTIYERSLKELPGSYKLW-YNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF-------MH-KM 105 (703)
Q Consensus 37 ~~~~~~-~~~-~~~a~~~~e~al~~~P~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p-~~ 105 (703)
+..+.. .++ .+.|...+++..+.+|....+- ..++... ... ..+--+|..+..++++. .| .+
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~-~~~------~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITIL-DHI------ETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-TTC------GGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH-HHh------hhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 344444 555 5889999999999999654332 2222221 110 01223456666666532 12 21
Q ss_pred ----------HHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHH
Q psy6461 106 ----------PRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168 (703)
Q Consensus 106 ----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 168 (703)
..+....+.|+.+.|+++.|..+-++|+...|. .-..|..++.+|...|+++.|+-.+...
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 235556688888999999999999999999995 4788999999999999999998776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.83 E-value=7.5 Score=33.85 Aligned_cols=96 Identities=5% Similarity=-0.064 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|+++.|..+.+.. +++.-|..++...+.+|+++-|.+.|.++ . -+..+.-++...|+.+.-.++-
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~----~------D~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ----H------SFDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT----T------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh----C------CHHHHHHHHHHhCCHHHHHHHH
Confidence 7788888876654 67899999999999999999998888873 1 1444444555667765554444
Q ss_pred HHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHH
Q psy6461 166 RRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAY 198 (703)
Q Consensus 166 ~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~ 198 (703)
+.+.... ....-...+.-.|++++++.+|.+
T Consensus 84 ~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE--DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443322 111222233456777777766644
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.63 E-value=2.9 Score=35.91 Aligned_cols=110 Identities=17% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHhCCCChhHHHHHHHHHHHhC---CCcch----HHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---CcchHHHHHHHH
Q psy6461 525 SRYGGTKLERARDLFEQCLEAC---PPRYA----KTLYLLYAKLEEEHGLARHAMAVYERATGAV---LPEEMFEMFNIY 594 (703)
Q Consensus 525 ~~~~~~~~~~A~~~~~~al~~~---p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~ 594 (703)
..+..+.++.|.-+...++... |+-.+ ..+...+|+.+...|+|.+|...|++|++.. ++...... -
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~---~ 105 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP---S 105 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc---c
Confidence 3334566777777777766543 33111 1366777777778888888888888876543 22211000 0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6461 595 IKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHC 650 (703)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 650 (703)
. +. ..-....... +. ..++-...+.++.+.|+++.|+.+++..
T Consensus 106 ~------~~----~ss~p~s~~~-~~--e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 T------GN----SASTPQSQCL-PS--EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------CC-CC--HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c------cc----cCCCcccccc-cc--hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 00 0000000001 11 2346677888999999999999998763
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.45 E-value=6.8 Score=32.57 Aligned_cols=56 Identities=5% Similarity=-0.091 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHH
Q psy6461 532 LERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMF 588 (703)
Q Consensus 532 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 588 (703)
..++..+++..++..|..- .+....+|--+.+.|++++|++..+..++..|.+...
T Consensus 58 i~~GI~LLe~l~~~~~~~~-RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4788999999999888652 3555666666789999999999999999999998443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=5.6 Score=40.17 Aligned_cols=99 Identities=8% Similarity=0.030 Sum_probs=59.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy6461 43 NAPKAIINTIYERSLKELPGSY------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFL 116 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 116 (703)
.++.+.|...+++|+......+ ..|..-.... ....+- .+...++..+
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~----------------l~~~~~----------~a~~~~~~~~ 181 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATA----------------LVEDKV----------LAHTAKAEAE 181 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHH----------------HHHHHH----------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHH----------------HHHHHH----------HHHHHHHHHH
Confidence 5788888999999988764321 1232211100 111111 1223455666
Q ss_pred HhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHH
Q psy6461 117 MDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYL 169 (703)
Q Consensus 117 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 169 (703)
...|+.+++...+.+++..+| .+..+|..+...+...|+..+|+..|++.-
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667777777777777777777 346677777777777777777777776653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.47 E-value=4 Score=38.16 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=82.8
Q ss_pred HHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhH
Q psy6461 402 YEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSI 481 (703)
Q Consensus 402 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 481 (703)
+.+.|++++|+...+..++..|.+. .+...+.++++-.|+++.|.+-++-+.+.+|... . ..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~----------~----~a 68 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL----------P----GA 68 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH----------H----HH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh----------H----HH
Confidence 3468899999999999999999997 8889999999999999999999999999999741 0 12
Q ss_pred HHHHHHHHHHHhcCChhHHHh-HhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 482 KLWSLYADLEESFGTFKAYEK-GIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~e~-al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
.+|...+..+....++ |.- +...+. ....-|...+..+......|+.++|..+-.++++..|..
T Consensus 69 ~~yr~lI~aE~~R~~v--faG~~~P~~~--g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 69 SQLRHLVKAAQARKDF--AQGAATAKVL--GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHHHHHHHHH--TTSCCCEECC--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHH--HcCCCCCCCC--CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 3344444443322111 000 000111 122336666655554444567777777777777776554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=9.5 Score=38.45 Aligned_cols=79 Identities=6% Similarity=-0.114 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc----CCCCChHhHHHHHH
Q psy6461 593 IYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC----DPRVTAGFWAAWKS 668 (703)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~ 668 (703)
..+......|+++++.....+++..+|-+.. +|..+...+.+.|+..+|...|+++.+.. .-+..+.+-..+..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3445556689999999999999999998765 88888899999999999999999986642 11223777777777
Q ss_pred HHHHc
Q psy6461 669 FEITH 673 (703)
Q Consensus 669 ~~~~~ 673 (703)
+....
T Consensus 254 il~~~ 258 (388)
T 2ff4_A 254 ILRQQ 258 (388)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 66544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.38 E-value=40 Score=39.56 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=39.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 397 EFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 397 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
.++..+...|.++-++.+.. ..|.++ ..-+..|.+++..|++++|...|.+|-.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~----~~~~~~----~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIG----WLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHH----HSCCCH----HHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHHHhh----hccCCc----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34555667777777766433 345565 3457788999999999999999998754
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.06 E-value=2.4 Score=44.01 Aligned_cols=104 Identities=6% Similarity=0.009 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCChHH----------HHHHHHHHhh----ccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHh
Q psy6461 552 KTLYLLYAKLEEEHGLARH----------AMAVYERATG----AVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIES 617 (703)
Q Consensus 552 ~~~~~~~a~~~~~~g~~~~----------A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (703)
..+|..|+.++...|+... .+..+-.+++ .........+++..+..+...+.+++|..+..++-
T Consensus 181 ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-- 258 (523)
T 4b4t_S 181 AKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-- 258 (523)
T ss_dssp ----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--
Confidence 4588888888887776654 2333333332 22333456688888888888899999999999884
Q ss_pred CCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 618 LPEE-----PTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 618 ~p~~-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
+|.+ ......+..|++..-.+++.+|...+..|+..+|++
T Consensus 259 fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 259 YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 6643 123345566888889999999999999999988765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.06 E-value=5.6 Score=40.85 Aligned_cols=102 Identities=5% Similarity=0.003 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc-hHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC--cchH--HHH
Q psy6461 553 TLYLLYAKLEEEHGLARHAMAVYERATGAVLPE-EMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE--EPTR--QMC 627 (703)
Q Consensus 553 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~--~~~ 627 (703)
.++..+|.++.+.|++++|.+.|.++....... ....++...+..+...+++..+...+.++-..... ++.. .+-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367889999999999999999999888765432 35677777888888888999999999988665322 2221 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy6461 628 LKFAEMETKLGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 628 ~~~a~~~~~~g~~~~A~~~~~~a~~~~ 654 (703)
...+.+....+++..|-..|-.+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 444555667888999888887776653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.45 E-value=13 Score=38.02 Aligned_cols=108 Identities=11% Similarity=0.160 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
..++..+|++|.+.|+++.|.+.|.++...+.+...-..++.....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~ir---------------------------------- 176 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIAR---------------------------------- 176 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHH----------------------------------
Confidence 3468899999999999999999999988866544322222211111
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
+.+..++...+...+.++-........+.....+....|.++...+++..|
T Consensus 177 -----------------------------l~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~A 227 (429)
T 4b4t_R 177 -----------------------------LGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEA 227 (429)
T ss_dssp -----------------------------HHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHH
T ss_pred -----------------------------HHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHH
Confidence 111226666677777766544332221111223344445556678999999
Q ss_pred HHHHHHhhccC
Q psy6461 412 RLIFDKATLVP 422 (703)
Q Consensus 412 ~~~~~~al~~~ 422 (703)
...|-.++...
T Consensus 228 a~~f~e~~~t~ 238 (429)
T 4b4t_R 228 AKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHhccC
Confidence 99998887663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 703 | ||||
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-17 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 1e-13 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 6e-13 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-05 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.2 bits (199), Expect = 2e-17
Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 20/267 (7%)
Query: 30 SVKHWLRYIEHKKNAP---------KAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG 80
V W +YI+ +K+ P + YE+ L L +WY + + K
Sbjct: 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 81 KV------ITDPSYEDVNNTFERSL-VFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRAL 133
++ N +ER++ + K ++ Y + + K + +++R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 134 RALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAA 193
A+ V+ Y+ F + ++ +F++ + Y+ +
Sbjct: 127 -AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185
Query: 194 VKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGH 253
I K + + +S + + + + ++ G
Sbjct: 186 SVAFKI---FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 254 LWNSLADYYIRSGLFERARDIYEEAIQ 280
+W + G + +
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFT 269
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.0 bits (170), Expect = 1e-13
Identities = 41/264 (15%), Positives = 80/264 (30%), Gaps = 62/264 (23%)
Query: 479 KSIKLWSLYADLEESFG------------TFKAYEKGIALFKWPYIFDIWNTYLTKFLSR 526
+ + +W Y E+S AYE+ L + DIW
Sbjct: 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ--CLLVLGHHPDIWYEAAQYLEQS 63
Query: 527 Y-----------GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVY 575
+ A +++E+ + + LY YA EE ++Y
Sbjct: 64 SKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML-LYFAYADYEESRMKYEKVHSIY 122
Query: 576 ERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP------------- 622
R A+ + ++ Y+K A GI R I+++A E
Sbjct: 123 NRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181
Query: 623 --------------------TRQMCLKFAEMETKLGEIDRARAIYAHCSQIC--DPRVTA 660
+ L + + + L E + R ++ P +
Sbjct: 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241
Query: 661 GFWAAWKSFEITHGNEDTMREMLR 684
WA + +FE G+ ++ ++ +
Sbjct: 242 EIWARFLAFESNIGDLASILKVEK 265
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.1 bits (165), Expect = 6e-13
Identities = 36/286 (12%), Positives = 85/286 (29%), Gaps = 30/286 (10%)
Query: 63 SYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122
+W Y++ + + V +E+ L+ + P IW + ++L K+
Sbjct: 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 66
Query: 123 TQT--------------RHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRY 168
++++RA+ L ++ ++ Y + +S E ++ R
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRL 125
Query: 169 LKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNP 228
L + D R E I K +H +
Sbjct: 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK--AREDARTRHHVYVTAALMEYYCSK 183
Query: 229 DKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVT-TVRD 287
DK + + + + + DY R ++E + + +
Sbjct: 184 DKSVAFKIFELGLKKYGDIPE----YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239
Query: 288 FTQVFDAYAQFEE--------LSLNKRMEEIAENDTPSEEDDIELE 325
+++ + FE L + KR + +E + ++
Sbjct: 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVD 285
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.1 bits (113), Expect = 2e-06
Identities = 40/277 (14%), Positives = 84/277 (30%), Gaps = 37/277 (13%)
Query: 312 ENDTPSEEDDIELELRLARLEDLMERRL--------LLLNSVLLRQNPHNVLEWHKRVRL 363
E P +D L R+ E+ L + + + +L +
Sbjct: 18 EKSNPLRTEDQTLIT--KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN 75
Query: 364 FDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423
+ Y A+ T+ K + L+ + + E + E I+++
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNML-----LYFAYADYEESRMKYEKVHSIYNRLL---A 127
Query: 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKL 483
+ D V+ ++ + RA ++ + +A D V ++
Sbjct: 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---------DARTRHHVYVTAALME 178
Query: 484 WSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCL 543
+ D +F F+ K + I +LS + R LFE+ L
Sbjct: 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID------YLSHLN--EDNNTRVLFERVL 230
Query: 544 EACP--PRYAKTLYLLYAKLEEEHGLARHAMAVYERA 578
+ P + ++ + E G + V +R
Sbjct: 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 35/256 (13%), Positives = 80/256 (31%), Gaps = 13/256 (5%)
Query: 246 RYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNK 305
+Y +Q L D + A +IYE AI T+ ++ ++ AYA +EE +
Sbjct: 58 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRMKY 115
Query: 306 RM-----EEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKR 360
+ + ++ AR + ++ ++ +
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVYVTA 174
Query: 361 VRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATL 420
+ D + + G + + + + ++ + R++F++
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231
Query: 421 VPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKS 480
E +W + E G + L++ R + A V YK
Sbjct: 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR--YKF 289
Query: 481 IKLWSLYADLEESFGT 496
+ L+ A ++ G
Sbjct: 290 MDLYPCSASELKALGY 305
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 43/275 (15%), Positives = 91/275 (33%), Gaps = 49/275 (17%)
Query: 394 LWIEFGKFYEVN-DQLEDARLIFDKATLVPYTKVEDLAT---VWCEWAELELRAGQEEAA 449
+W ++ ++ + N + ED LI + + L +W E A+ ++ + A
Sbjct: 10 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE 69
Query: 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTF----KAYEKGIA 505
M A ++ A + + K++ L+ YAD EES + Y + +A
Sbjct: 70 KGDMNNAKLFSDEAANIYERA--ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 506 LFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYA-------------- 551
+ + KF R G ++ R +F++ E R+
Sbjct: 128 IE--DIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 183
Query: 552 -------------------KTLYLLYAKLEEEHGLARHAMAVYERATGAVL--PEEMFEM 590
L Y + ++ER + PE+ E+
Sbjct: 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243
Query: 591 FNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQ 625
+ ++ + I + ++ +R + EE +
Sbjct: 244 WARFLAFESNIGDLASILKVEKRRFTAFREEYEGK 278
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 703 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.84 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.7 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.7 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.65 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.58 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.15 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.1 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.08 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.06 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.0 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.96 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.94 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.92 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.69 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.68 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.12 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.1 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.1 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.0 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.76 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.33 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.9 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.4e-28 Score=253.07 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++.+| .+..+|..++.++...|++++|+..+
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhhhcccccccccc
Confidence 6666777777777777777777777777777777777777777777777666 34566666666666667777777777
Q ss_pred HHHHhhCCCCHH
Q psy6461 166 RRYLKLFPEDAE 177 (703)
Q Consensus 166 ~~~l~~~p~~~~ 177 (703)
..++..+|....
T Consensus 91 ~~~~~~~~~~~~ 102 (388)
T d1w3ba_ 91 RHALRLKPDFID 102 (388)
T ss_dssp HHHHHHCTTCHH
T ss_pred cccccccccccc
Confidence 777766666543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5e-27 Score=243.05 Aligned_cols=381 Identities=14% Similarity=0.155 Sum_probs=259.0
Q ss_pred HHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy6461 36 RYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGR 114 (703)
Q Consensus 36 ~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 114 (703)
.++.... .|++++|...|+++++.+|.++.+|..++..+... |++++|...|+++++.+|+++.+|..++.
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 75 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--------RRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455555 89999999999999999999999999999887664 89999999999999999999999999999
Q ss_pred HHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH---HHHhcCCHHH
Q psy6461 115 FLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE---YLSSIERLDE 191 (703)
Q Consensus 115 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~---~~~~~~~~~~ 191 (703)
++...|++++|...+.++++..|. ....+..........+....+...........+........ .....+....
T Consensus 76 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
T d1w3ba_ 76 VYKERGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHH
T ss_pred Hhhhhccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 999999999999999999999994 45566666666666666777777777777766655432221 1122232222
Q ss_pred HHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHH
Q psy6461 192 AAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERA 271 (703)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 271 (703)
+...+...+. ..|. ....+..+|..+...|+++
T Consensus 154 ~~~~~~~~~~------------------------~~~~---------------------~~~~~~~l~~~~~~~~~~~-- 186 (388)
T d1w3ba_ 154 AKACYLKAIE------------------------TQPN---------------------FAVAWSNLGCVFNAQGEIW-- 186 (388)
T ss_dssp HHHHHHHHHH------------------------HCTT---------------------CHHHHHHHHHHHHTTTCHH--
T ss_pred hHHHHHHhhc------------------------cCcc---------------------hhHHHHhhcccccccCcHH--
Confidence 2222222210 0110 1123444444444444444
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCC
Q psy6461 272 RDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNP 351 (703)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 351 (703)
T Consensus 187 -------------------------------------------------------------------------------- 186 (388)
T d1w3ba_ 187 -------------------------------------------------------------------------------- 186 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHH
Q psy6461 352 HNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLAT 431 (703)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 431 (703)
.|...+++++.. .| ....+|..+|.++...|++++|+..|+++....|... .
T Consensus 187 ------------------~A~~~~~~al~~-~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 238 (388)
T d1w3ba_ 187 ------------------LAIHHFEKAVTL-DP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----V 238 (388)
T ss_dssp ------------------HHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH----H
T ss_pred ------------------HHHHHHHHHHHh-Cc-----ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH----H
Confidence 444444444443 12 2344566667777777777777777777777666665 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCc
Q psy6461 432 VWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPY 511 (703)
Q Consensus 432 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~ 511 (703)
.+..++.++.+.|++++|+..|+++++.+|++ +..|..++.++...|+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~l~~~~~~~~~~-------------- 287 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-----------------PDAYCNLANALKEKGSV-------------- 287 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-----------------HHHHHHHHHHHHHHSCH--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCH--------------
Confidence 66677777777777777777777777777763 56666666666655554
Q ss_pred hHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHH
Q psy6461 512 IFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMF 591 (703)
Q Consensus 512 ~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 591 (703)
++|.+.|++++...|.+ ...+..++.++...|++++|+..|+++++..|++ ..++
T Consensus 288 ---------------------~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~ 342 (388)
T d1w3ba_ 288 ---------------------AEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAH 342 (388)
T ss_dssp ---------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC--HHHH
T ss_pred ---------------------HHHHHHHHhhhccCCcc--chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHH
Confidence 67777777777777776 4567777777777777777777777777777765 3344
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q psy6461 592 NIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGE 639 (703)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 639 (703)
...+..+...|++++|+..|+++++.+|+++. +|..++.++.++|+
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFAD--AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH--HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCC
Confidence 45555555666777777777777777776654 67777777766664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=1.6e-22 Score=201.89 Aligned_cols=238 Identities=16% Similarity=0.277 Sum_probs=199.4
Q ss_pred hhHHHHHHHHHHHHcC--------ChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC--------------CHHH
Q psy6461 391 LHTLWIEFGKFYEVND--------QLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG--------------QEEA 448 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 448 (703)
...+|..|+.+...++ ..++++.+|++|+...|.++ .+|+.|+.++...+ ..++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~----~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCchHHHHHHHhhcccchHH
Confidence 3567888888876543 35678889999999999887 99999999875543 3588
Q ss_pred HHHHHHHHhcC-CCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHh
Q psy6461 449 ALRLMARATAT-PARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527 (703)
Q Consensus 449 A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~ 527 (703)
|+.+|++|+.. .|. +..+|..|+.++...|+.
T Consensus 83 a~~i~~ral~~~~p~-----------------~~~l~~~ya~~~~~~~~~------------------------------ 115 (308)
T d2onda1 83 AANIYERAISTLLKK-----------------NMLLYFAYADYEESRMKY------------------------------ 115 (308)
T ss_dssp HHHHHHHHHTTTTTT-----------------CHHHHHHHHHHHHHTTCH------------------------------
T ss_pred HHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHhcccH------------------------------
Confidence 99999999986 555 478999999999887775
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH-hcCchH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE-IYGIPK 606 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 606 (703)
++|+.+|++++...|.+. ..+|+.++.++.+.|+++.|+++|+++++..|.+. .+|..++.++.. .|+.+.
T Consensus 116 -----~~a~~i~~~~l~~~~~~~-~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~--~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 116 -----EKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH--HVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp -----HHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT--HHHHHHHHHHHHTSCCHHH
T ss_pred -----HHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhccCHHH
Confidence 999999999999999774 36899999999999999999999999999999874 455555555544 478899
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC--CCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICD--PRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
|+.+|+++++.+|+++. +|..|++++.+.|++++||.+|++|++.++ |+....+|..|..||..+|+.+.+.++.+
T Consensus 188 a~~i~e~~l~~~p~~~~--~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 188 AFKIFELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999866 999999999999999999999999999753 23356799999999999999999999885
Q ss_pred HHHHH
Q psy6461 685 IKRSV 689 (703)
Q Consensus 685 ~~~~~ 689 (703)
.+..+
T Consensus 266 r~~~~ 270 (308)
T d2onda1 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=8.1e-22 Score=196.74 Aligned_cols=240 Identities=15% Similarity=0.226 Sum_probs=207.1
Q ss_pred cHHHHHHHHhhhcCC----------chhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC--------------Ch
Q psy6461 353 NVLEWHKRVRLFDGK----------PLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND--------------QL 408 (703)
Q Consensus 353 ~~~~~~~~~~~~~~~----------~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------------~~ 408 (703)
.+..|..++.+...+ ...++.+|++|+..++ ..+.+|+.|+.++...+ ..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~------~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~ 80 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 80 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCchHHHHHHHhhcccch
Confidence 457888888875432 3458889999999864 36889999999886543 35
Q ss_pred HHHHHHHHHhhcc-CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 409 EDARLIFDKATLV-PYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 409 ~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
++|+.+|++|++. .|.+. .+|..|+.++...|+++.|+.+|+++++..|.+ ...+|..|
T Consensus 81 ~~a~~i~~ral~~~~p~~~----~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~----------------~~~~w~~~ 140 (308)
T d2onda1 81 DEAANIYERAISTLLKKNM----LLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------------PTLVYIQY 140 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----------------THHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCC----------------hHHHHHHH
Confidence 8899999999986 66665 899999999999999999999999999999875 35689999
Q ss_pred HHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-cC
Q psy6461 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE-HG 566 (703)
Q Consensus 488 ~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~g 566 (703)
+.++.+.|+. +.|+++|+++++..|.+ ...|+.++.++.. .|
T Consensus 141 ~~~~~~~~~~-----------------------------------~~ar~i~~~al~~~~~~--~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 141 MKFARRAEGI-----------------------------------KSGRMIFKKAREDARTR--HHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHHCH-----------------------------------HHHHHHHHHHHTSTTCC--THHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCh-----------------------------------HHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhcc
Confidence 9888876664 99999999999999988 5689999988765 58
Q ss_pred ChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcch--HHHHHHHHHHHHHcCCHHHHH
Q psy6461 567 LARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPT--RQMCLKFAEMETKLGEIDRAR 644 (703)
Q Consensus 567 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~ 644 (703)
+.+.|+++|+++++.+|.+ ..+|..|+.++...|++++||.+|+++++.+|.++. ..+|..|+.++...|+.+.++
T Consensus 184 ~~~~a~~i~e~~l~~~p~~--~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 184 DKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999988 679999999999999999999999999999886653 459999999999999999999
Q ss_pred HHHHHHhcccCCC
Q psy6461 645 AIYAHCSQICDPR 657 (703)
Q Consensus 645 ~~~~~a~~~~~~~ 657 (703)
++++|+.+..+.+
T Consensus 262 ~~~~r~~~~~~~~ 274 (308)
T d2onda1 262 KVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHCccc
Confidence 9999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.4e-19 Score=181.87 Aligned_cols=260 Identities=12% Similarity=0.097 Sum_probs=180.6
Q ss_pred cCC-CChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcC
Q psy6461 26 RNP-FSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMH 103 (703)
Q Consensus 26 ~~P-~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 103 (703)
.|| .+...+...+..+. .|++++|...|+++++.+|+++..|..++...... |++++|...|+++++.+|
T Consensus 13 ~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p 84 (323)
T d1fcha_ 13 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN--------EQELLAISALRRCLELKP 84 (323)
T ss_dssp SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCT
T ss_pred cCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHhhhcccc
Confidence 355 36677778887777 99999999999999999999999999998887664 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6461 104 KMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYL 183 (703)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 183 (703)
+++..|..++.++...|++++|...+++++...|.. ..++..........+ .... . ....
T Consensus 85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~-----------~----~~~~-- 144 (323)
T d1fcha_ 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEGAGGAG-LGPS-----------K----RILG-- 144 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--GGGCC-------------------------------CTTH--
T ss_pred ccccccccccccccccccccccccchhhHHHhccch--HHHHHhhhhhhhhcc-cccc-----------h----hhHH--
Confidence 999999999999999999999999999999998853 222221111100000 0000 0 0000
Q ss_pred HhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHH
Q psy6461 184 SSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYI 263 (703)
Q Consensus 184 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (703)
.+.
T Consensus 145 -----------------------------------------------------------------------------~~~ 147 (323)
T d1fcha_ 145 -----------------------------------------------------------------------------SLL 147 (323)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 011
Q ss_pred HhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q psy6461 264 RSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLLLN 343 (703)
Q Consensus 264 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (703)
..+.+.+|...|++++...|+..+. .++...+.
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~-~~~~~l~~---------------------------------------------- 180 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDP-DVQCGLGV---------------------------------------------- 180 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCH-HHHHHHHH----------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHhhccccc-ccchhhHH----------------------------------------------
Confidence 1233344555555555554432221 01100000
Q ss_pred hhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCC
Q psy6461 344 SVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPY 423 (703)
Q Consensus 344 ~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 423 (703)
+....|++++|+..|++++... | ..+.+|..+|.++...|++++|+..|+++++.+|
T Consensus 181 -----------------~~~~~~~~~~A~~~~~~al~~~-p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 181 -----------------LFNLSGEYDKAVDCFTAALSVR-P-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp -----------------HHHHTTCHHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -----------------HHHHHHHHhhhhcccccccccc-c-----ccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 0001155566666666666542 2 2456788899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCc
Q psy6461 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPV 464 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 464 (703)
.++ ..|..+|.++.+.|++++|+..|++|++..|++.
T Consensus 238 ~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 238 GYI----RSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred ccH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 887 8899999999999999999999999999888753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.7e-19 Score=178.82 Aligned_cols=284 Identities=14% Similarity=0.098 Sum_probs=217.9
Q ss_pred hcCCC-cHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 348 RQNPH-NVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 348 ~~~p~-~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
+.||. +...++..+. +..|++++|+..|+++++.. | ..+.+|..+|.++...|++++|+..|+++++++|.
T Consensus 12 ~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 85 (323)
T d1fcha_ 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-P-----KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 85 (323)
T ss_dssp SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc
Confidence 34553 5555666665 34499999999999999873 3 46899999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHh
Q psy6461 425 KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGI 504 (703)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al 504 (703)
++ ..|..++.++...|++++|...+++++...|.... ++......... .......
T Consensus 86 ~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~--- 140 (323)
T d1fcha_ 86 NQ----TALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-----------------LVTPAEEGAGG-AGLGPSK--- 140 (323)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-----------------GCC-------------------
T ss_pred cc----cccccccccccccccccccccchhhHHHhccchHH-----------------HHHhhhhhhhh-cccccch---
Confidence 87 89999999999999999999999999999987521 11110000000 0000000
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCc
Q psy6461 505 ALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLP 584 (703)
Q Consensus 505 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 584 (703)
.... .+. ..+..++|...|.++++.+|+...+.++..+|.++...|++++|+..|++++...|+
T Consensus 141 ------~~~~---~~~-------~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 204 (323)
T d1fcha_ 141 ------RILG---SLL-------SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 204 (323)
T ss_dssp ------CTTH---HHH-------HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------hhHH---HHH-------HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc
Confidence 0000 000 012348899999999999998765678999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCC------
Q psy6461 585 EEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRV------ 658 (703)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~------ 658 (703)
+ ..+|...+..+...|++++|...|+++++..|+++. +|..+|.++.+.|++++|+..|++|+++.|...
T Consensus 205 ~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 280 (323)
T d1fcha_ 205 D--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR--SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280 (323)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred c--ccchhhhhhcccccccchhHHHHHHHHHHHhhccHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh
Confidence 7 457777777888899999999999999999999866 899999999999999999999999999754321
Q ss_pred ---ChHhHHHHHHHHHHcCCHHHHHHH
Q psy6461 659 ---TAGFWAAWKSFEITHGNEDTMREM 682 (703)
Q Consensus 659 ---~~~~~~~~~~~~~~~g~~~~~~~~ 682 (703)
...+|..+.......|..+.+...
T Consensus 281 ~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 281 GAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 234677777666667776655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.9e-16 Score=155.88 Aligned_cols=217 Identities=8% Similarity=0.046 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCcccccc
Q psy6461 391 LHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAG-QEEAALRLMARATATPARPVAYHDE 469 (703)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~ 469 (703)
..+++..++.++.+.+.+++|+..|+++++++|.+. .+|...+.++...| ++++|+..++++++.+|+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~----~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~------ 111 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------ 111 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh------
Confidence 445555556666666666666666666666666665 66666666655544 3666666666666666663
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 470 AETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
..+|...+.++...|++ ++|...|+++++.+|++
T Consensus 112 -----------~~a~~~~~~~~~~l~~~-----------------------------------~eAl~~~~kal~~dp~n 145 (315)
T d2h6fa1 112 -----------YQVWHHRRVLVEWLRDP-----------------------------------SQELEFIADILNQDAKN 145 (315)
T ss_dssp -----------HHHHHHHHHHHHHHTCC-----------------------------------TTHHHHHHHHHHHCTTC
T ss_pred -----------hhHHHHHhHHHHhhccH-----------------------------------HHHHHHHhhhhhhhhcc
Confidence 56666666665555543 66666666666666666
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHhCCCcchHH
Q psy6461 550 YAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAIESLPEEPTRQ 625 (703)
Q Consensus 550 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 625 (703)
..+|...|.++...|++++|+..|+++++.+|.+...+...+.+..... .+.+++|...+.++++..|++..
T Consensus 146 --~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~-- 221 (315)
T d2h6fa1 146 --YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES-- 221 (315)
T ss_dssp --HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH--
T ss_pred --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH--
Confidence 4566666666666666666666666666666665433322222211111 12245566666666666666554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHH
Q psy6461 626 MCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKS 668 (703)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 668 (703)
+|...+.++... ..+++...+++++++.+...+.......+.
T Consensus 222 ~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 263 (315)
T d2h6fa1 222 AWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVD 263 (315)
T ss_dssp HHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 555554443332 345566666666655433323333333333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.3e-17 Score=166.35 Aligned_cols=287 Identities=8% Similarity=-0.067 Sum_probs=205.7
Q ss_pred hhhHHHHhcCCCChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc--CCCCchhHHHHHHH
Q psy6461 18 LPYEEEILRNPFSVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG--KVITDPSYEDVNNT 94 (703)
Q Consensus 18 ~~~e~~l~~~P~~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~A~~~ 94 (703)
..+|+..+..+ ....+..+..... .+..++|+.+++++++.+|++..+|.....+....... .....|.+++|...
T Consensus 17 ~~~e~~~k~~~-~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~ 95 (334)
T d1dcea1 17 KRLEREQKLKL-YQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF 95 (334)
T ss_dssp SCCCCHHHHHH-HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45566555432 1233333444444 34458999999999999999999997666554332111 11123568899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHhCCcccccccHH-HHHHHHHhcCChHHHHHHHHHHHhh
Q psy6461 95 FERSLVFMHKMPRIWLDYGRFLMDQH--KITQTRHVFDRALRALPITQHHRVWP-LYLSFVKSHAVPETAVRVFRRYLKL 171 (703)
Q Consensus 95 ~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~l~~ 171 (703)
|+++++.+|+++.+|...+.++...+ +.++|...+++++..+|. ....|. ..+.++...+.++.|+..++++++.
T Consensus 96 ~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~ 173 (334)
T d1dcea1 96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch--hhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999998887765 478999999999999994 455554 4567777788899999999999999
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccch
Q psy6461 172 FPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQL 251 (703)
Q Consensus 172 ~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (703)
+|.+.
T Consensus 174 ~p~~~--------------------------------------------------------------------------- 178 (334)
T d1dcea1 174 NFSNY--------------------------------------------------------------------------- 178 (334)
T ss_dssp TCCCH---------------------------------------------------------------------------
T ss_pred CCCCH---------------------------------------------------------------------------
Confidence 88874
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
.+|..+|.++...|++++|...+++++...|.... ++.
T Consensus 179 -~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~-------------------------------------- 216 (334)
T d1dcea1 179 -SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE---LVQ-------------------------------------- 216 (334)
T ss_dssp -HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH---HHH--------------------------------------
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH---HHH--------------------------------------
Confidence 46777777777888887776666665554332110 000
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
.. .. .+..+++...|.+++...++. ...+..++..+...|+.++|
T Consensus 217 -~~------------~~----------------l~~~~~a~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 217 -NA------------FF----------------TDPNDQSAWFYHRWLLGRAEP------LFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp -HH------------HH----------------HCSSCSHHHHHHHHHHSCCCC------SSSCCCCHHHHHHHHHHHHH
T ss_pred -HH------------HH----------------hcchhHHHHHHHHHHHhCcch------hhHHHHHHHHHHHHhhHHHH
Confidence 00 00 044456777777777763322 22345556677778889999
Q ss_pred HHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 412 RLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 412 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
...+.++++.+|.+. .+|..+|.++...|++++|+..|+++++.+|.+
T Consensus 262 ~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 262 CKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp HHHHHHHCTTCHHHH----HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhhCchHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 999999998888776 889999999999999999999999999999974
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.5e-15 Score=149.09 Aligned_cols=240 Identities=9% Similarity=0.054 Sum_probs=191.2
Q ss_pred hhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHhhccCC
Q psy6461 347 LRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVND-QLEDARLIFDKATLVPY 423 (703)
Q Consensus 347 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~ 423 (703)
+.-+|+...++..+..++. +..++|+..|+++|... | ....+|...|.++...| ++++|+..++++++.+|
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P-----~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p 109 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-C-----CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 3445666666655555443 78899999999999974 3 46789999999998866 59999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhH
Q psy6461 424 TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKG 503 (703)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 503 (703)
++. .+|...+.++.+.|++++|+..++++++.+|++ ..+|...+.++...|++
T Consensus 110 ~~~----~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-----------------~~a~~~~~~~~~~~~~~------ 162 (315)
T d2h6fa1 110 KNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-----------------YHAWQHRQWVIQEFKLW------ 162 (315)
T ss_dssp TCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----------------HHHHHHHHHHHHHHTCC------
T ss_pred hhh----hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-----------------hHHHHHHHHHHHHHHhh------
Confidence 998 999999999999999999999999999999995 88999999888887765
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC------hHHHHHHHHH
Q psy6461 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGL------ARHAMAVYER 577 (703)
Q Consensus 504 l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~------~~~A~~~~~~ 577 (703)
++|...|+++++.+|.+ ..+|...+.++...|. +++|...+.+
T Consensus 163 -----------------------------~~Al~~~~~al~~~p~n--~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 163 -----------------------------DNELQYVDQLLKEDVRN--NSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp -----------------------------TTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHCCcc--HHHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence 89999999999999999 5699999998887776 5789999999
Q ss_pred HhhccCcchHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcc
Q psy6461 578 ATGAVLPEEMFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK--LGEIDRARAIYAHCSQI 653 (703)
Q Consensus 578 al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~a~~~ 653 (703)
+++..|.+.....+.+.+ ....+.+++...++++++..|+.....+....+.++.. .+..+.+...+++|+.+
T Consensus 212 al~~~P~~~~~~~~l~~l---l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 212 MIKLVPHNESAWNYLKGI---LQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286 (315)
T ss_dssp HHHHSTTCHHHHHHHHHH---HTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHH---HHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999986544444332 33456789999999999999876543344455555433 35555556666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.9e-15 Score=144.58 Aligned_cols=228 Identities=12% Similarity=-0.000 Sum_probs=165.6
Q ss_pred chhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHH
Q psy6461 368 PLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEE 447 (703)
Q Consensus 368 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (703)
.+.++..+++++...+. .++....+++.+|.+|...|++++|+..|+++++++|+++ .+|..+|.++.+.|+++
T Consensus 15 ~e~al~~~~e~l~~~~~--~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----~a~~~lg~~~~~~g~~~ 88 (259)
T d1xnfa_ 15 QEVILARMEQILASRAL--TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFD 88 (259)
T ss_dssp HHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH----HHHhhhchHHHHHHHHH
Confidence 34567777777765221 2234678999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHh
Q psy6461 448 AALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRY 527 (703)
Q Consensus 448 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~ 527 (703)
+|+..|+++++.+|++ ...|..++.++...|+.
T Consensus 89 ~A~~~~~~al~~~p~~-----------------~~a~~~lg~~~~~~g~~------------------------------ 121 (259)
T d1xnfa_ 89 AAYEAFDSVLELDPTY-----------------NYAHLNRGIALYYGGRD------------------------------ 121 (259)
T ss_dssp HHHHHHHHHHHHCTTC-----------------THHHHHHHHHHHHTTCH------------------------------
T ss_pred HhhhhhhHHHHHHhhh-----------------hhhHHHHHHHHHHHhhH------------------------------
Confidence 9999999999999985 67888888887777665
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
++|...|+++++.+|.+ .......+......+..+.+..+........+......+...++......+..+.+
T Consensus 122 -----~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 122 -----KLAQDDLLAFYQDDPND--PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL 194 (259)
T ss_dssp -----HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhcccc--HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 34455555555566665555555555555444432211111111111112233444
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCC
Q psy6461 608 RQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPR 657 (703)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~ 657 (703)
...+..++...|+.. ..|..+|.++...|++++|+..|++|++..|.+
T Consensus 195 ~~~~~~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 195 KADATDNTSLAEHLS--ETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHCCSHHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhhhcCcccH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 444444445545433 378888999999999999999999999985543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=7.2e-15 Score=147.69 Aligned_cols=263 Identities=11% Similarity=-0.024 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----------cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcC-
Q psy6461 88 YEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ----------HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHA- 156 (703)
Q Consensus 88 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~- 156 (703)
.++|+.++++++..+|++..+|.....++... |++++|...|+++++.+| .+..+|...+......+
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p--k~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC--CcHHHHHHhhHHHHHhcc
Confidence 47899999999999999999998777766543 346778888888888888 45777777766665544
Q ss_pred -ChHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCcccccccc
Q psy6461 157 -VPETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLN 235 (703)
Q Consensus 157 -~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~ 235 (703)
+.++|+..+.++++.+|.+...
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~--------------------------------------------------------- 145 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHC--------------------------------------------------------- 145 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHH---------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHhhCchhhhh---------------------------------------------------------
Confidence 3577888888888777766311
Q ss_pred HHHHHHhHhhhhccchhhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy6461 236 VDAIIRGGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDT 315 (703)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~ 315 (703)
.+...+..+...+.+++|...+++++...|.
T Consensus 146 ------------------~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~------------------------------- 176 (334)
T d1dcea1 146 ------------------WDYRRFVAAQAAVAPAEELAFTDSLITRNFS------------------------------- 176 (334)
T ss_dssp ------------------HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-------------------------------
T ss_pred ------------------hhhHHHHHHHhccccHHHHHHHHHHHHcCCC-------------------------------
Confidence 1234455666678888888888776665543
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhc--CCchhHHHHHHHHHHhcCCCccCCchhH
Q psy6461 316 PSEEDDIELELRLARLEDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFD--GKPLDIIRTYTEAVKTVDPKLAVGKLHT 393 (703)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 393 (703)
+..+|..++.++. |++++|...+.+++...+ ..
T Consensus 177 -------------------------------------~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~-- 211 (334)
T d1dcea1 177 -------------------------------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL------KE-- 211 (334)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH------HH--
T ss_pred -------------------------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHH------HH--
Confidence 3333333332221 444444444444333311 01
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
..+...+...+..+++...|.+++...|.+. ..+..++..+...++..+|...+.+++..+|+
T Consensus 212 --~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----------- 274 (334)
T d1dcea1 212 --LELVQNAFFTDPNDQSAWFYHRWLLGRAEPL----FRCELSVEKSTVLQSELESCKELQELEPENKW----------- 274 (334)
T ss_dssp --HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS----SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred --HHHHHHHHHhcchhHHHHHHHHHHHhCcchh----hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-----------
Confidence 1122223345666678888888888877766 55566666666777888888888888888876
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHH
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKT 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 553 (703)
+...|...+.++...|+. ++|...|+++++++|.+ ..
T Consensus 275 ------~~~~~~~l~~~~~~~~~~-----------------------------------~eA~~~~~~ai~ldP~~--~~ 311 (334)
T d1dcea1 275 ------CLLTIILLMRALDPLLYE-----------------------------------KETLQYFSTLKAVDPMR--AA 311 (334)
T ss_dssp ------HHHHHHHHHHHHCTGGGH-----------------------------------HHHHHHHHHHHHHCGGG--HH
T ss_pred ------HHHHHHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHHHCccc--HH
Confidence 367777777777665554 88888888888888876 45
Q ss_pred HHHHHHHHHH
Q psy6461 554 LYLLYAKLEE 563 (703)
Q Consensus 554 ~~~~~a~~~~ 563 (703)
.|..++..+.
T Consensus 312 y~~~L~~~~~ 321 (334)
T d1dcea1 312 YLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.3e-13 Score=132.66 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=91.8
Q ss_pred CchhHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q psy6461 44 APKAIINTIYERSLKELP----GSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ 119 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 119 (703)
.+.+.+...+++++...+ ....+|...+..+... |++++|...|+++++.+|+++.+|..+|.++...
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~--------g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~ 84 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 84 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH
Confidence 344556666667766544 3334666666555543 7788888888888888888888888888888888
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHH
Q psy6461 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAE 177 (703)
Q Consensus 120 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 177 (703)
|++++|...|+++++.+| .++.+|..++.++...|+++.|+..|+++++.+|.+..
T Consensus 85 g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 140 (259)
T d1xnfa_ 85 GNFDAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 140 (259)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhhhhhhHHHHHHh--hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence 888888888888888888 44677777788877888888888888888888877653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.1e-11 Score=124.71 Aligned_cols=333 Identities=9% Similarity=-0.015 Sum_probs=219.7
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
++.....|.++...|++++|...|++++...|......... .+.. .
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~-a~~~----l----------------------------- 57 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV-ATSV----L----------------------------- 57 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHH-HHHH----H-----------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHH-HHHH----H-----------------------------
Confidence 35566679999999999999999999999887644211110 0000 0
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHH
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDA 411 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 411 (703)
..+....|++++|+..|++++...+...........+..++..+...|++..|
T Consensus 58 ---------------------------g~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 110 (366)
T d1hz4a_ 58 ---------------------------GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 110 (366)
T ss_dssp ---------------------------HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------HHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111129999999999999876332222223456677788889999999999
Q ss_pred HHHHHHhhccCCC----CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHH
Q psy6461 412 RLIFDKATLVPYT----KVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLY 487 (703)
Q Consensus 412 ~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
...+.+++...+. .......++..++.++...|+++.+...+.++....+...... ....+...
T Consensus 111 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 178 (366)
T d1hz4a_ 111 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ------------QLQCLAML 178 (366)
T ss_dssp HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG------------GHHHHHHH
T ss_pred HHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh------------HHHHHHHH
Confidence 9999998875321 1122345677888899999999999999999988766532110 12233333
Q ss_pred HHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc-----chHHHHHHHHHHH
Q psy6461 488 ADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR-----YAKTLYLLYAKLE 562 (703)
Q Consensus 488 ~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~a~~~ 562 (703)
+..+...+. ..++...+.++....+.. ....++...+.++
T Consensus 179 ~~~~~~~~~-----------------------------------~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T d1hz4a_ 179 IQCSLARGD-----------------------------------LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 223 (366)
T ss_dssp HHHHHHHTC-----------------------------------HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-----------------------------------HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 333333333 366777777776654322 1135677888889
Q ss_pred HHcCChHHHHHHHHHHhhccCcchH--HHHHHHHHHHHHHhcCchHHHHHHHHHHHhC---CCcc-hHHHHHHHHHHHHH
Q psy6461 563 EEHGLARHAMAVYERATGAVLPEEM--FEMFNIYIKKAAEIYGIPKTRQIYERAIESL---PEEP-TRQMCLKFAEMETK 636 (703)
Q Consensus 563 ~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~-~~~~~~~~a~~~~~ 636 (703)
...|++++|...+++++...|.+.. ...+......+...|++++|...+++++... ...+ ...++..++.++..
T Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 303 (366)
T d1hz4a_ 224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 303 (366)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999988776532 2344445566677899999999999998642 2222 24478889999999
Q ss_pred cCCHHHHHHHHHHHhcccCCCCC-------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q psy6461 637 LGEIDRARAIYAHCSQICDPRVT-------AGFWAAWKSFEITHGNEDTMREMLRIKRSVQAQYN 694 (703)
Q Consensus 637 ~g~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 694 (703)
.|++++|+..|++|+++.++.+. .........-....|..+++++- .+..+..++|
T Consensus 304 ~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~--~a~~ll~~in 366 (366)
T d1hz4a_ 304 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH--RAQRILREIN 366 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH--HHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHhcC
Confidence 99999999999999987433211 12223333334445666666542 2445554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=6.8e-12 Score=126.26 Aligned_cols=299 Identities=11% Similarity=0.023 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccc---cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 105 MPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQH---HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
++.+....+.+++..|++++|...|+++|...|.+.. ..++..++.++...|++++|+..|+++++..|...
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 85 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD----- 85 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-----
Confidence 3455556677788888888888888888888875321 12344556666677777777777777765433221
Q ss_pred HHHhcCCHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHH
Q psy6461 182 YLSSIERLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADY 261 (703)
Q Consensus 182 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (703)
.. ......+..++..
T Consensus 86 -----------------------------------------------~~------------------~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 86 -----------------------------------------------VW------------------HYALWSLIQQSEI 100 (366)
T ss_dssp -----------------------------------------------CH------------------HHHHHHHHHHHHH
T ss_pred -----------------------------------------------ch------------------HHHHHHHHHHHHH
Confidence 00 0012456778888
Q ss_pred HHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q psy6461 262 YIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARLEDLMERRLLL 341 (703)
Q Consensus 262 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (703)
+...|++..|...+.+++...+....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~------------------------------------------------------ 126 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHL------------------------------------------------------ 126 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhccc------------------------------------------------------
Confidence 99999999999999998875321100
Q ss_pred hhhhhhhcCCCcHHHHHHHHh--hhcCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q psy6461 342 LNSVLLRQNPHNVLEWHKRVR--LFDGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKAT 419 (703)
Q Consensus 342 ~~~~~l~~~p~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 419 (703)
...+........++. ...|+.+.+...+.+++...+... .......+...+..+...+++..+...+.++.
T Consensus 127 ------~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 199 (366)
T d1hz4a_ 127 ------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 199 (366)
T ss_dssp ------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 000000001111111 112888899999999887743322 22345667777888889999999999998887
Q ss_pred ccCCCC---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCC
Q psy6461 420 LVPYTK---VEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGT 496 (703)
Q Consensus 420 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (703)
...... ......++...+.++...|++++|...+.+++...|.+... ....+...+.++...|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~ 266 (366)
T d1hz4a_ 200 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-------------LQGQWRNIARAQILLGE 266 (366)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-------------GHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-------------HHHHHHHHHHHHHHcCC
Confidence 763322 22234567788888899999999999999999887764211 13334445555555554
Q ss_pred hhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhC------CCcchHHHHHHHHHHHHHcCChHH
Q psy6461 497 FKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEAC------PPRYAKTLYLLYAKLEEEHGLARH 570 (703)
Q Consensus 497 ~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~a~~~~~~g~~~~ 570 (703)
+++|...+++++... |.. ..++..+|.++...|++++
T Consensus 267 -----------------------------------~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~ 309 (366)
T d1hz4a_ 267 -----------------------------------FEPAEIVLEELNENARSLRLMSDL--NRNLLLLNQLYWQAGRKSD 309 (366)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHHHTCHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHhhcccChHH--HHHHHHHHHHHHHCCCHHH
Confidence 488999998888642 222 4689999999999999999
Q ss_pred HHHHHHHHhhccCc
Q psy6461 571 AMAVYERATGAVLP 584 (703)
Q Consensus 571 A~~~~~~al~~~p~ 584 (703)
|+..+++|+...+.
T Consensus 310 A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 310 AQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.1e-11 Score=98.67 Aligned_cols=106 Identities=8% Similarity=0.013 Sum_probs=72.9
Q ss_pred HHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy6461 37 YIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRF 115 (703)
Q Consensus 37 ~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 115 (703)
-+..+. .|++++|...|+++|+.+|.++.+|..++..+... |++++|...|.++++.+|+++.+|..+|.+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 80 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--------GDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc--------ccccccchhhhhHHHhccchhhHHHHHHHH
Confidence 344444 67777777777777777777777777777666554 667777777777777777777777777777
Q ss_pred HHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHH
Q psy6461 116 LMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFV 152 (703)
Q Consensus 116 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 152 (703)
+...|++++|...|+++++..|. ++.++..+..+.
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~l~ 115 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNME 115 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHh
Confidence 77777777777777777777773 456666655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=2.5e-10 Score=93.81 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=81.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHH
Q psy6461 397 EFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQAR 476 (703)
Q Consensus 397 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 476 (703)
.-|..+...|++++|+..|+++++.+|.++ .+|..+|.++...|++++|+..+.++++.+|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------- 70 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------------- 70 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcch----hhhhcccccccccccccccchhhhhHHHhccch-------------
Confidence 346677777888888888888888888776 778888888888888888888888888887774
Q ss_pred HHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHH
Q psy6461 477 VYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYL 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 556 (703)
+..|..++.++...|++ ++|...|+++++.+|++ +.++.
T Consensus 71 ----~~~~~~~g~~~~~~~~~-----------------------------------~~A~~~~~~a~~~~p~~--~~~~~ 109 (117)
T d1elwa_ 71 ----GKGYSRKAAALEFLNRF-----------------------------------EEAKRTYEEGLKHEANN--PQLKE 109 (117)
T ss_dssp ----HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHTTCTTC--HHHHH
T ss_pred ----hhHHHHHHHHHHHccCH-----------------------------------HHHHHHHHHHHHhCCCC--HHHHH
Confidence 67777777777766654 77888888888888877 56777
Q ss_pred HHHHHH
Q psy6461 557 LYAKLE 562 (703)
Q Consensus 557 ~~a~~~ 562 (703)
.++.+.
T Consensus 110 ~l~~l~ 115 (117)
T d1elwa_ 110 GLQNME 115 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.1e-09 Score=98.77 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=119.8
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..|.+ +.... .+++++|+..|++ +.|.++.+|..++..+... |++++|...|++|++.+|+++.+|.
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~--------g~~~~A~~~~~kAl~ldp~~~~a~~ 74 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTIL--------KNMTEAEKAFTRSINRDKHLAVAYF 74 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHc--------CCchhHHHHHHHHHHHhhhhhhhHH
Confidence 45665 44444 9999999999986 4566789999998887664 8999999999999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccc--------------cccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQH--------------HRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
.+|.++..+|++++|...|++++...|.+.. ..++..++.++...|++++|...|.+++...|...
T Consensus 75 ~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 75 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999987764321 13455668888889999999999999999988763
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q psy6461 177 EDYIEYLSSIERLDEAAVKLAYIV 200 (703)
Q Consensus 177 ~~~~~~~~~~~~~~~A~~~~~~~~ 200 (703)
.+..+.|+..+.+..
T Consensus 155 ---------~~~~~~Al~~~~~~~ 169 (192)
T d1hh8a_ 155 ---------HSKIDKAMECVWKQK 169 (192)
T ss_dssp ---------GGHHHHHHHHHHTTC
T ss_pred ---------hHHHHHHHHHHHhhh
Confidence 344556665555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.7e-10 Score=98.11 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...|+++++.+|+++.+|..+|.++...|++++|...|+++|+.+| .+..+|..++.++...|++++|+..|
T Consensus 24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~~~g~~~eA~~~~ 101 (159)
T d1a17a_ 24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGKFRAALRDY 101 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555 23444444455544555555555555
Q ss_pred HHHHhhCCCCHH
Q psy6461 166 RRYLKLFPEDAE 177 (703)
Q Consensus 166 ~~~l~~~p~~~~ 177 (703)
++++..+|++..
T Consensus 102 ~~a~~~~p~~~~ 113 (159)
T d1a17a_ 102 ETVVKVKPHDKD 113 (159)
T ss_dssp HHHHHHSTTCHH
T ss_pred HHHHHcCCCCHH
Confidence 555555555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.3e-09 Score=98.24 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhH
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETV 473 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 473 (703)
+|.. |..+...|++++|+..|+++ .+.++ .+|+.+|.++...|++++|...|++|++.+|+.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i---~~~~~----~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------- 69 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV---QDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------- 69 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS---SSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc---CCCCH----HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----------
Confidence 4543 77777888888888888864 34454 778888888888888888888888888888885
Q ss_pred HHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc---
Q psy6461 474 QARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY--- 550 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--- 550 (703)
+..|..++.++...|++ ++|...|++++...|.+.
T Consensus 70 -------~~a~~~~g~~~~~~g~~-----------------------------------~~A~~~~~kAl~~~~~n~~~~ 107 (192)
T d1hh8a_ 70 -------AVAYFQRGMLYYQTEKY-----------------------------------DLAIKDLKEALIQLRGNQLID 107 (192)
T ss_dssp -------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHTTTTCSEEE
T ss_pred -------hhhHHHHHHHHHhhccH-----------------------------------HHHHHHHHHHHHhCccCchHH
Confidence 77888888887777665 888888888887655431
Q ss_pred -----------hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcc
Q psy6461 551 -----------AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPE 585 (703)
Q Consensus 551 -----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 585 (703)
...++..+|.++...|++++|...+++|+...|..
T Consensus 108 ~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 108 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 13567788888888888888888888888877764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=1.4e-09 Score=105.67 Aligned_cols=215 Identities=11% Similarity=0.086 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchh
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPY--TKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAE 471 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 471 (703)
+|...|.+|...|++++|...|++++.+.. .+.......|..+|.++.+.|++++|...+.+++...+......
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~---- 114 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR---- 114 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch----
Confidence 456668889999999999999999988732 22233457899999999999999999999999988765421100
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcc-
Q psy6461 472 TVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRY- 550 (703)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~- 550 (703)
.....+...+.++.. ..+++++|...|+++++..+...
T Consensus 115 -------~~~~~~~~l~~~~~~----------------------------------~~~~~~~A~~~~~~A~~l~~~~~~ 153 (290)
T d1qqea_ 115 -------RGANFKFELGEILEN----------------------------------DLHDYAKAIDCYELAGEWYAQDQS 153 (290)
T ss_dssp -------HHHHHHHHHHHHHHH----------------------------------TTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------hHHHHHHHHHHhHhh----------------------------------HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 012333333333322 12456999999999988744321
Q ss_pred ---hHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchH-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCcc
Q psy6461 551 ---AKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEM-----FEMFNIYIKKAAEIYGIPKTRQIYERAIESLPEEP 622 (703)
Q Consensus 551 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (703)
...++..+|.++...|++++|...|++++...+.... ...+...+..+...++++.|...++++++.+|..+
T Consensus 154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~ 233 (290)
T d1qqea_ 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence 1357899999999999999999999999998776531 12333333344557899999999999999988543
Q ss_pred h---HHHHHHHHHHHHH--cCCHHHHHHHHHHHhcc
Q psy6461 623 T---RQMCLKFAEMETK--LGEIDRARAIYAHCSQI 653 (703)
Q Consensus 623 ~---~~~~~~~a~~~~~--~g~~~~A~~~~~~a~~~ 653 (703)
. ..+...++..+.. .+.+++|+..|+++.++
T Consensus 234 ~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 234 DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp ----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 2 1233444443333 34588999999887766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2e-09 Score=94.00 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCch
Q psy6461 433 WCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYI 512 (703)
Q Consensus 433 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~ 512 (703)
+...|..+++.|++++|+..|+++++.+|++ ...|..++.++...|++
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~~~~--------------- 60 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSN-----------------AIYYGNRSLAYLRTECY--------------- 60 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------HHHHHHHHHHHHHTTCH---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhh-----------------hhhhhhhHHHHHhcccc---------------
Confidence 3344555566677777777777777776663 66666666666665554
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcch
Q psy6461 513 FDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEE 586 (703)
Q Consensus 513 ~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 586 (703)
++|...|+++++.+|++ ..+|..+|.++...|++++|...|++++...|.+.
T Consensus 61 --------------------~~A~~~~~kal~~~p~~--~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~ 112 (159)
T d1a17a_ 61 --------------------GYALGDATRAIELDKKY--IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 112 (159)
T ss_dssp --------------------HHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred --------------------chHHHHHHHHHHHcccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 66777777777777766 45666777777777777777777777776666653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=3.5e-09 Score=102.83 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHhCchHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCcchHHHHHHHHHH
Q psy6461 252 GHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLNKRMEEIAENDTPSEEDDIELELRLARL 331 (703)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (703)
...|..+|.+|.+.|++++|...|++++...+...+....-.
T Consensus 77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-------------------------------------- 118 (290)
T d1qqea_ 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN-------------------------------------- 118 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH--------------------------------------
Confidence 357899999999999999999999999986543322111100
Q ss_pred HHHHhhhhhhhhhhhhhcCCCcHHHHHHHHhhh---cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCCh
Q psy6461 332 EDLMERRLLLLNSVLLRQNPHNVLEWHKRVRLF---DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQL 408 (703)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~---~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 408 (703)
.+...+.++ .|++++|+..|+++++..+....+.....++..+|.++...|++
T Consensus 119 ------------------------~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 119 ------------------------FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp ------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------------HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence 001111111 18889999999999876433222223456789999999999999
Q ss_pred HHHHHHHHHhhccCCCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 409 EDARLIFDKATLVPYTKVE---DLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
++|...|++++...+.... .....+...+..+...|+++.|...++++++.+|..
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999998766541 223556777778888999999999999999999863
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.06 E-value=4.9e-10 Score=91.17 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=70.0
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..+...+.... .|++++|...|+++++.+|+++..|..++...... |++++|...|+++++.+|+++.+|.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~a~~ 88 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------EKDGLAIIALNHARMLDPKDIAVHA 88 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhh--------hhHHHhhcccccccccccccccchH
Confidence 44555665555 77777787788888777787777777777766543 6777777777777777777777777
Q ss_pred HHHHHHHhccChHHHHHHHHHHH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRAL 133 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al 133 (703)
.++.++..+|++++|.+.+++.|
T Consensus 89 ~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 89 ALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777777777777777765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=5.5e-10 Score=102.03 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHH
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRI 108 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 108 (703)
+.+.....|..+. .|++++|+..|+++|+.+|.++.+|..++..+... |++++|...|++|++.+|+++..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~--------~~~~~Ai~~~~~al~l~p~~~~a 74 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--------QQPEQALADCRRALELDGQSVKA 74 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTTSCTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhh--------hhhhhhhHHHHHHHHhCCCcHHH
Confidence 3445556676666 88888888888888888888888888888877654 78888888888888888888888
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 109 WLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 109 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
|..+|.++...|++++|...|+++++..|.
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 888888888888888888888888888774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.5e-09 Score=89.30 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH---KITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAV 162 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 162 (703)
+++++|...|+++++.+|.++.++++||.+++..+ ++++|..+|++++..+|.+....+|..++..+...|++++|+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~ 92 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH
Confidence 78999999999999999999999999999998754 556799999999998885433557888999999999999999
Q ss_pred HHHHHHHhhCCCCHHH
Q psy6461 163 RVFRRYLKLFPEDAED 178 (703)
Q Consensus 163 ~~~~~~l~~~p~~~~~ 178 (703)
..|+++++.+|++..+
T Consensus 93 ~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 93 KYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCcCCHHH
Confidence 9999999999999754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.5e-09 Score=112.30 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=77.1
Q ss_pred CCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCC
Q psy6461 366 GKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQ 445 (703)
Q Consensus 366 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (703)
|+...|...+.+++... ...+++.+|.++...|++++|+..|++|+++.|++. ..|+.+|.++...|+
T Consensus 134 ~~~~~A~~~~~~al~~~--------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~----~~~~~Lg~~~~~~~~ 201 (497)
T d1ya0a1 134 THTSAIVKPQSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSKGD 201 (497)
T ss_dssp ---------CCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHcCC
Confidence 56667777777776541 245788899999999999999999999999999997 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhc
Q psy6461 446 EEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESF 494 (703)
Q Consensus 446 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
..+|...|.||+...|.. +..+..++.++...
T Consensus 202 ~~~A~~~y~ral~~~~~~-----------------~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 202 HLTTIFYYCRSIAVKFPF-----------------PAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHHSSSBCC-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHHHHHh
Confidence 999999999999998874 67777776665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.96 E-value=2e-09 Score=87.40 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHH
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVF 165 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 165 (703)
|++++|...|+++++.+|+++.+|..+|.++...|++++|...|+++++.+| .+..+|..++.++...|+.++|++.|
T Consensus 30 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~~g~~~~A~~~l 107 (112)
T d1hxia_ 30 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEHNANAALASL 107 (112)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHHCCCHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 45889999999999999999999999
Q ss_pred HHHH
Q psy6461 166 RRYL 169 (703)
Q Consensus 166 ~~~l 169 (703)
++.|
T Consensus 108 ~~~l 111 (112)
T d1hxia_ 108 RAWL 111 (112)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.6e-09 Score=87.74 Aligned_cols=108 Identities=7% Similarity=-0.100 Sum_probs=88.6
Q ss_pred HHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCC--HHHHHHHH
Q psy6461 37 YIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKM--PRIWLDYG 113 (703)
Q Consensus 37 ~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~ 113 (703)
++.... .+++++|.+.|+++++.+|.+++.+..|+.++... ...+++++|+.+|+++++.+|.+ ..+|..+|
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s-----~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-----RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-----SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 444444 78999999999999999999999999999886421 12367889999999999988755 45899999
Q ss_pred HHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHH
Q psy6461 114 RFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSF 151 (703)
Q Consensus 114 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 151 (703)
.++...|++++|++.|+++|+.+|. +..+......+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~--~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQ--NNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcC--CHHHHHHHHHH
Confidence 9999999999999999999999995 45555444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=4.2e-10 Score=118.35 Aligned_cols=226 Identities=8% Similarity=-0.009 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHH
Q psy6461 370 DIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAA 449 (703)
Q Consensus 370 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 449 (703)
+|.+.|++|+... | +..+.|+.+|.++...|++++| |++++..+|... ........+. ...+..+
T Consensus 4 eA~q~~~qA~~l~-p-----~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a----~~~~~e~~Lw--~~~y~~~ 68 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-A-----DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA----LDKKVEQDLW--NHAFKNQ 68 (497)
T ss_dssp HHHHHHHHHHHHH-G-----GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH----HHHTHHHHHH--HHHTHHH
T ss_pred HHHHHHHHHHHcC-C-----CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH----HHHhHHHHHH--HHHHHHH
Confidence 6777788887763 2 3567777778888777777665 777777766432 1111111111 1123455
Q ss_pred HHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHH-HHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhC
Q psy6461 450 LRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYA-DLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYG 528 (703)
Q Consensus 450 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~ 528 (703)
++.+++..+...... ...+...+. .+....
T Consensus 69 ie~~r~~~k~~~~~~---------------~~~~~~~~~~~l~~a~---------------------------------- 99 (497)
T d1ya0a1 69 ITTLQGQAKNRANPN---------------RSEVQANLSLFLEAAS---------------------------------- 99 (497)
T ss_dssp HHHHHHHHSCSSCTT---------------TTHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHhcccccCcc---------------HHHHHHHHHHHHHHHH----------------------------------
Confidence 666666665443210 011111111 111111
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHHH
Q psy6461 529 GTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKTR 608 (703)
Q Consensus 529 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (703)
+.++.+...|.+++...|++ ...+..+|..+.+.|+.++|...+.+++...|.. .+...+......+++++|+
T Consensus 100 -~~Y~~ai~~l~~~~~l~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 100 -GFYTQLLQELCTVFNVDLPC--RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH----CLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp -HHHHHHHHHHTC---------------------------------CCHHHHHHHHH----HHHHHHHHHHHTTCHHHHH
T ss_pred -HHHHHHHHHHHHHHCCChhh--HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHcccHHHHH
Confidence 11356666666666677766 4567777777777788888877777777666542 3333455555567788888
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHH
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFE 670 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 670 (703)
..|++|++..|+++. .+..+|.++...|+..+|...|.||+...+| .+..+.++....
T Consensus 173 ~~y~~A~~l~P~~~~--~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~--~~~a~~nL~~~~ 230 (497)
T d1ya0a1 173 SYYRHAAQLVPSNGQ--PYNQLAILASSKGDHLTTIFYYCRSIAVKFP--FPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHCTTBSH--HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CHHHHHHHHHHH
Confidence 888888888887776 6777778877888888888888888777544 355555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.92 E-value=5.6e-09 Score=89.08 Aligned_cols=95 Identities=13% Similarity=0.006 Sum_probs=74.9
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc--CCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKG--KVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQH 120 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 120 (703)
.+.+++|+..|+++++.+|++++.|..++..+...... .....+.+++|...|++|++.+|+++.+|..+|.++..+|
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 56799999999999999999999999998776532110 0001256789999999999999999999999999998765
Q ss_pred C-----------hHHHHHHHHHHHHhCC
Q psy6461 121 K-----------ITQTRHVFDRALRALP 137 (703)
Q Consensus 121 ~-----------~~~A~~~~~~al~~~p 137 (703)
+ +++|...|++++..+|
T Consensus 90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 90 FLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 3 4566666777777676
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.92 E-value=3.4e-09 Score=96.63 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCcccccchhh
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARPVAYHDEAET 472 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 472 (703)
+-....|..+...|++++|+..|++++..+|.++ .+|..+|.++.+.|++++|+..|++|++.+|+.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~--------- 71 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQS--------- 71 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc---------
Confidence 3456678899999999999999999999999987 899999999999999999999999999999985
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCc
Q psy6461 473 VQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPR 549 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 549 (703)
...|..++.++...|++ ++|...|++++++.|++
T Consensus 72 --------~~a~~~lg~~~~~l~~~-----------------------------------~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 72 --------VKAHFFLGQCQLEMESY-----------------------------------DEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp --------HHHHHHHHHHHHHTTCH-----------------------------------HHHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHHCCCH-----------------------------------HHHHHHHHHHHHhCccc
Confidence 78888888888887765 89999999999987754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=5e-08 Score=85.73 Aligned_cols=119 Identities=9% Similarity=-0.041 Sum_probs=80.0
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..+...+.... .+++++|+..|++++..+|.....+..... ....+ ...++.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~-----------------~~~~~----------~~~~~~ 66 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ-----------------KAQAL----------RLASHL 66 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH-----------------HHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHh-----------------hhchh----------HHHHHH
Confidence 34445555555 899999999999999999966543322110 00111 113456
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDY 179 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 179 (703)
.++.++.+.|++++|...++++|..+| .+..+|...+.++...|+++.|+..|+++++.+|++....
T Consensus 67 nla~~y~k~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~ 133 (170)
T d1p5qa1 67 NLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHhhhhcccccchhhhhhhccc--cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 677777777777777777777777777 4466777777777777777777777777777777776643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=7.4e-08 Score=84.60 Aligned_cols=69 Identities=16% Similarity=0.044 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcch-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVED-----------LATVWCEWAELELRAGQEEAALRLMARATATPAR 462 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 462 (703)
.+...|..+...|++++|+..|++++...|..... ...++..++.++++.|++++|...+++++..+|+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 34566888888999999999999998886654311 1233444555555555566666555555555555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.76 E-value=1.9e-08 Score=85.62 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----------cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhc
Q psy6461 86 PSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ----------HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSH 155 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 155 (703)
+.+++|+..|+++++.+|+++.+|..+|.++... +.+++|...|+++++.+| .+...|..++.++...
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hhhHHHhhHHHHHHHc
Confidence 6799999999999999999999999999998754 456889999999999999 5588888888887665
Q ss_pred CC-----------hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHh
Q psy6461 156 AV-----------PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYI 199 (703)
Q Consensus 156 ~~-----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~ 199 (703)
|+ ++.|+..|++++..+|++...+..+. ....|...+.++
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~----~~~ka~~~~~e~ 139 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE----MTAKAPQLHAEA 139 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----HHHTHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHH----HHHHHHHHHHHH
Confidence 43 57899999999999999975443332 223444454444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.75 E-value=2e-07 Score=80.16 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.++.++|.+|...|++++|+..|+++++++|.++ ..|+..|..+...|++++|+..|+++++++|++
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~----ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhh----hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3578889999999999999999999999999998 899999999999999999999999999999985
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.74 E-value=2.6e-07 Score=80.84 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 393 TLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.++.++|.++...|++++|+..++++++++|.++ ..|+..|.++...|++++|+..|.+++..+|++
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3577889999999999999999999999999998 899999999999999999999999999999985
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.73 E-value=5.7e-08 Score=85.39 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=85.8
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
.+++.+|...|.++++..|... +...........|....+|..++.++.+.|++
T Consensus 40 ~~~y~~Ai~~y~~al~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 93 (169)
T d1ihga1 40 SQNWEMAIKKYTKVLRYVEGSR--------------------------AAAEDADGAKLQPVALSCVLNIGACKLKMSDW 93 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH--------------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhhhhhh--------------------------hhhhhHHHHHhChhhHHHHHHHHHHHHhhccc
Confidence 7999999999999986433111 11112233455677788888889999999999
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYI 180 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 180 (703)
++|...|.++|+.+| .++.+|...+..+...|+++.|+..|+++++++|++.....
T Consensus 94 ~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~ 149 (169)
T d1ihga1 94 QGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149 (169)
T ss_dssp HHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chhhhhhhhhhhhhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999888 45788888888888889999999999999999998876543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=8.2e-08 Score=79.73 Aligned_cols=107 Identities=11% Similarity=0.174 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHHHHHhcC
Q psy6461 108 IWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIEYLSSIE 187 (703)
Q Consensus 108 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 187 (703)
.+...|+.++..|++++|...|.++|+.+| .+..+|..++.++...|+++.|+..++++++.+|.+...+..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~------ 77 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ------ 77 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH------
Confidence 355778888899999999999999999999 457788888888889999999999999998887776421111
Q ss_pred CHHHHHHHHHHhhcccccccccCCchhhhHHHHHHHHhcCccccccccHHHHHHhHhhhhccchhhHHHHHHHHHHHhCc
Q psy6461 188 RLDEAAVKLAYIVNKESFVSKHGKSNHQLWNELCEMISQNPDKIRSLNVDAIIRGGLRRYTDQLGHLWNSLADYYIRSGL 267 (703)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (703)
...++..+|..+...++
T Consensus 78 ---------------------------------------------------------------~a~~~~~lg~~~~~~~~ 94 (128)
T d1elra_ 78 ---------------------------------------------------------------IAKAYARIGNSYFKEEK 94 (128)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHHhCC
Confidence 12578889999999999
Q ss_pred hHHHHHHHHHHHhhcCCc
Q psy6461 268 FERARDIYEEAIQTVTTV 285 (703)
Q Consensus 268 ~~~A~~~~~~~l~~~~~~ 285 (703)
+++|...|++++...++.
T Consensus 95 ~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 95 YKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhcCCCH
Confidence 999999999999876653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.69 E-value=1.5e-07 Score=82.44 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhccCCC
Q psy6461 394 LWIEFGKFYEVNDQLEDARLIFDKATLVPYT 424 (703)
Q Consensus 394 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 424 (703)
.+...|..+...|++++|+..|++++...+.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~ 47 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM 47 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3556688888899999999999998876443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.68 E-value=2.1e-07 Score=79.90 Aligned_cols=122 Identities=7% Similarity=-0.112 Sum_probs=86.7
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH
Q psy6461 32 KHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL 110 (703)
Q Consensus 32 ~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 110 (703)
..|..-|..+- .|++.+|...|++|+...|....... .......+.+ ...++.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~---------------------~~~~~~~~~~-----~~~~~~ 71 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD---------------------QILLDKKKNI-----EISCNL 71 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC---------------------HHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh---------------------HHHHHhhhhH-----HHHHHh
Confidence 34555565555 89999999999999998875432110 0111111111 124677
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy6461 111 DYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDAEDYIE 181 (703)
Q Consensus 111 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 181 (703)
+++.++...|++++|...++++|..+| .+..+|...+.++...|+++.|+..|+++++++|++......
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~ 140 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 140 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHhcccchhhhhhhccccccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788888888888888888888888888 457788888888888888888888888888888888775433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.4e-07 Score=78.34 Aligned_cols=98 Identities=9% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHH-
Q psy6461 33 HWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWL- 110 (703)
Q Consensus 33 ~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~- 110 (703)
.+...+..+. .+++++|...|.++++.+|.+..+|..++..+... |++++|...|++++..+|+++..|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~l~~~~~~~~~~ 77 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--------GDYNKCRELCEKAIEVGRENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc--------CchHHHHHHHHHHHHhCcccHHHHHH
Confidence 4566777666 99999999999999999999999999999988775 8999999999999999998776554
Q ss_pred ------HHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 111 ------DYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 111 ------~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
..|.++...+++++|...|++++...|+
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 4555666678999999999999988774
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.63 E-value=2.3e-07 Score=81.38 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhcc
Q psy6461 396 IEFGKFYEVNDQLEDARLIFDKATLV 421 (703)
Q Consensus 396 ~~~a~~~~~~~~~~~A~~~~~~al~~ 421 (703)
...+..+...|++++|+..|+++++.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~ 56 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY 56 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34466666788888888888888764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=1.7e-05 Score=74.76 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=132.6
Q ss_pred HHHHHHHHhhh--cCCchhHHHHHHHHHHhcCCCccCCchhHHHHHHHHHHHH----cCChHHHHHHHHHhhccCCCCcc
Q psy6461 354 VLEWHKRVRLF--DGKPLDIIRTYTEAVKTVDPKLAVGKLHTLWIEFGKFYEV----NDQLEDARLIFDKATLVPYTKVE 427 (703)
Q Consensus 354 ~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~ 427 (703)
+.+|+.++... .+|+.+|++.|+++.+. +...++..+|.+|.. ..++..|...++.+.... ++
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~- 70 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS- 70 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--cc-
Confidence 34444444322 37777888888877654 235567777777775 557777877777776543 22
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcccccchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhH
Q psy6461 428 DLATVWCEWAELELR----AGQEEAALRLMARATATPARPVAYHDEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKG 503 (703)
Q Consensus 428 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 503 (703)
..+..++.+... .++.+.|...++++....+. .....++........
T Consensus 71 ---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-------------------~a~~~l~~~~~~~~~------- 121 (265)
T d1ouva_ 71 ---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-------------------EGCASLGGIYHDGKV------- 121 (265)
T ss_dssp ---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHCSS-------
T ss_pred ---chhhccccccccccccchhhHHHHHHHhhhhhhhhh-------------------hHHHhhcccccCCCc-------
Confidence 445555555443 35677777777777765542 111222222211111
Q ss_pred hhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHh
Q psy6461 504 IALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEE----HGLARHAMAVYERAT 579 (703)
Q Consensus 504 l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al 579 (703)
.......+...+.+...... ...+..++.++.. ..+...+...++.+.
T Consensus 122 ------------------------~~~~~~~a~~~~~~~~~~~~----~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~ 173 (265)
T d1ouva_ 122 ------------------------VTRDFKKAVEYFTKACDLND----GDGCTILGSLYDAGRGTPKDLKKALASYDKAC 173 (265)
T ss_dssp ------------------------SCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ------------------------ccchhHHHHHHhhhhhcccc----cchhhhhhhhhccCCCcccccccchhhhhccc
Confidence 12334666677766655432 3467777777765 345667777778777
Q ss_pred hccCcchHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcc
Q psy6461 580 GAVLPEEMFEMFNIYIKKAA--EIYGIPKTRQIYERAIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQI 653 (703)
Q Consensus 580 ~~~p~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~ 653 (703)
+..... .....+.+.... ..+++++|...|+++.+... +..+..++.++.. ..+.++|..+|++|...
T Consensus 174 ~~g~~~--A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 174 DLKDSP--GCFNAGNMYHHGEGATKNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HTTCHH--HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred cccccc--cccchhhhcccCcccccchhhhhhhHhhhhcccC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 654322 222222222111 13578888999999888742 2367777777764 23688899999998877
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.46 E-value=1.8e-05 Score=74.64 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=155.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCcccc
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELR----AGQEEAALRLMARATATPARPVAYH 467 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~ 467 (703)
|..++.+|..+...+++++|+..|+++.+. .++ ..+..++.++.. ..++..|...+..+.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~------ 69 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY------ 69 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc------
Confidence 568899999999999999999999999875 344 778889998876 6689999999999887652
Q ss_pred cchhhHHHHHHhhHHHHHHHHHHHHhcCChhHHHhHhhcCCCCchHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhCC
Q psy6461 468 DEAETVQARVYKSIKLWSLYADLEESFGTFKAYEKGIALFKWPYIFDIWNTYLTKFLSRYGGTKLERARDLFEQCLEACP 547 (703)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~al~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~A~~~~~~al~~~p 547 (703)
+..+..++.+...... .....+.|...++++....+
T Consensus 70 -------------~~a~~~l~~~~~~~~~-------------------------------~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 70 -------------SNGCHLLGNLYYSGQG-------------------------------VSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp -------------HHHHHHHHHHHHHTSS-------------------------------SCCCHHHHHHHHHHHHHTTC
T ss_pred -------------cchhhccccccccccc-------------------------------cchhhHHHHHHHhhhhhhhh
Confidence 3444444444332211 13456889999999998765
Q ss_pred CcchHHHHHHHHHHHHH----cCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHhCC
Q psy6461 548 PRYAKTLYLLYAKLEEE----HGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAE----IYGIPKTRQIYERAIESLP 619 (703)
Q Consensus 548 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p 619 (703)
.. ....++..+.. ......+...+.+........ .+......... ..+...+...++.+.+.
T Consensus 106 ~~----a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-- 175 (265)
T d1ouva_ 106 AE----GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD----GCTILGSLYDAGRGTPKDLKKALASYDKACDL-- 175 (265)
T ss_dssp HH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred hh----HHHhhcccccCCCcccchhHHHHHHhhhhhcccccc----hhhhhhhhhccCCCcccccccchhhhhccccc--
Confidence 43 34444444443 445677788888777655543 23333333333 35566777888888764
Q ss_pred CcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHH-cC---CHHHHHHHHHHHHHHH
Q psy6461 620 EEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEIT-HG---NEDTMREMLRIKRSVQ 690 (703)
Q Consensus 620 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~g---~~~~~~~~~~~~~~~~ 690 (703)
.++. .+..++.++.. ..++++|..+|+++.+.. ++.-+..++.+... .| +.+.|.+.++++-...
T Consensus 176 g~~~--A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 176 KDSP--GCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TCHH--HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cccc--cccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 3333 67778877766 568999999999998873 35566666666653 22 6888998887775543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.42 E-value=2e-07 Score=87.70 Aligned_cols=125 Identities=8% Similarity=-0.014 Sum_probs=88.1
Q ss_pred cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCh
Q psy6461 43 NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKI 122 (703)
Q Consensus 43 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 122 (703)
+|++++|+..|+++++.+|.+...|..++.++... |++++|...|+++++.+|++...+..++.++...+..
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~--------G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCID--------GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 78888888888888888888888888888887665 8888888888888888888888888888877655544
Q ss_pred HHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCH
Q psy6461 123 TQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLKLFPEDA 176 (703)
Q Consensus 123 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 176 (703)
+++...+.+.....+. .....+...+......|+.++|+..++++.+..|...
T Consensus 81 ~~a~~~~~~~~~~~~p-~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 81 KDFAQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHHTTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHhhhhhcccCc-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 4433332222211110 1222333345556677888888888888888887764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.22 E-value=1.9e-06 Score=80.86 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=90.3
Q ss_pred CCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchHH
Q psy6461 528 GGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPKT 607 (703)
Q Consensus 528 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A 607 (703)
..|++++|+..|+++++.+|++ ...+..++.++...|++++|++.|+++++..|++. ..+..|.......+...++
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d--~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~--~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHhccccHHH
Confidence 4678999999999999999999 67999999999999999999999999999999874 4555555544332222222
Q ss_pred HHHHHHHHHh-CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy6461 608 RQIYERAIES-LPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQICDP 656 (703)
Q Consensus 608 ~~~~~~al~~-~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~~ 656 (703)
...+.+.... .|+ ....+...+......|+.++|...++++.+..|.
T Consensus 84 ~~~~~~~~~~~~p~--~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 84 AQGAATAKVLGENE--ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TTSCCCEECCCSCH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhhhcccCch--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 2111111111 121 2235566677888999999999999999998543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5e-06 Score=64.24 Aligned_cols=72 Identities=15% Similarity=0.035 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q psy6461 392 HTLWIEFGKFYEVNDQLEDARLIFDKATLVPYTKV---EDLATVWCEWAELELRAGQEEAALRLMARATATPARP 463 (703)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 463 (703)
.+-++.+|..+...|++++|+..|+++++..|.+. .....++..+|..+.+.|++++|+..++++++.+|++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 34467889999999999999999999998755432 2235788999999999999999999999999999985
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=9e-06 Score=62.75 Aligned_cols=78 Identities=9% Similarity=-0.044 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHh
Q psy6461 30 SVKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSY-------KLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVF 101 (703)
Q Consensus 30 ~~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~-------~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 101 (703)
+.+.+..++.... +|++.+|+..|++|++..|.+. +++..++..... .|++++|+..|+++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~--------~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ--------QGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh--------cCChHHHHHHHHHHHHh
Confidence 5677888998777 9999999999999999887653 333333333332 26666666666666666
Q ss_pred cCCCHHHHHHHHHH
Q psy6461 102 MHKMPRIWLDYGRF 115 (703)
Q Consensus 102 ~p~~~~~~~~~~~~ 115 (703)
+|+++.++.+++.+
T Consensus 76 ~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 76 DPEHQRANGNLKYF 89 (95)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH
Confidence 66666666665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.10 E-value=8.6e-05 Score=64.67 Aligned_cols=129 Identities=10% Similarity=-0.101 Sum_probs=86.8
Q ss_pred hCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhcCchH
Q psy6461 527 YGGTKLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKAAEIYGIPK 606 (703)
Q Consensus 527 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 606 (703)
...|++++|.+.|.+|+.+.+.... ..+.. +.+ +........+. ....+...+......|++++
T Consensus 22 ~~~g~~e~A~~~~~~AL~l~rG~~l--~~~~~-------~~w-----~~~~r~~l~~~--~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 22 AAAGRFEQASRHLSAALREWRGPVL--DDLRD-------FQF-----VEPFATALVED--KVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTT--GGGTT-------STT-----HHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCccccc--ccCcc-------hHH-----HHHHHHHHHHH--HHHHHHHHHHHHHHCCCchH
Confidence 3467788888888888888776521 11000 000 00111111111 13456667777778999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc----CCCCChHhHHHHHHHHHHc
Q psy6461 607 TRQIYERAIESLPEEPTRQMCLKFAEMETKLGEIDRARAIYAHCSQIC----DPRVTAGFWAAWKSFEITH 673 (703)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~ 673 (703)
|...++++++.+|.+.. +|..++..+.+.|+..+|+..|++|.... .-+..+.+...+..+....
T Consensus 86 Al~~~~~al~~~P~~e~--~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~~ 154 (179)
T d2ff4a2 86 VIAELEALTFEHPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQ 154 (179)
T ss_dssp HHHHHHHHHHHSTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCccHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhCC
Confidence 99999999999999876 89999999999999999999999995531 1122366777777666544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=2.3e-05 Score=68.52 Aligned_cols=118 Identities=8% Similarity=-0.038 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhh-cCchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHH
Q psy6461 31 VKHWLRYIEHKK-NAPKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIW 109 (703)
Q Consensus 31 ~~~w~~~~~~~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 109 (703)
.+.+...+.... .|+++.|...|.+|+...|+..-.+..... -+........+....+|
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~--------------------w~~~~r~~l~~~~~~a~ 70 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ--------------------FVEPFATALVEDKVLAH 70 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST--------------------THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchH--------------------HHHHHHHHHHHHHHHHH
Confidence 345555666666 899999999999999999877533221110 11112222334456788
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy6461 110 LDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVRVFRRYLK 170 (703)
Q Consensus 110 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 170 (703)
..++..+...|++++|...+++++..+| .+..+|..++..+...|+..+|+..|+++..
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~~P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999 5689999999999999999999999998743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.02 E-value=1.4e-05 Score=68.47 Aligned_cols=97 Identities=13% Similarity=-0.004 Sum_probs=60.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhhccCcch----------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC-------c
Q psy6461 559 AKLEEEHGLARHAMAVYERATGAVLPEE----------MFEMFNIYIKKAAEIYGIPKTRQIYERAIESLPE-------E 621 (703)
Q Consensus 559 a~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~ 621 (703)
|..+...|++++|+..|++++.+.|..+ ....|......+..+|++++|...++++++..|. .
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4444455666666666666665554321 1123444444455566666666666666654331 1
Q ss_pred c--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy6461 622 P--TRQMCLKFAEMETKLGEIDRARAIYAHCSQICD 655 (703)
Q Consensus 622 ~--~~~~~~~~a~~~~~~g~~~~A~~~~~~a~~~~~ 655 (703)
. ...++..++.++...|++++|...|++|+++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1 122577889999999999999999999998843
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.97 E-value=6.1e-06 Score=70.74 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHhccChHHHHHHHHHHHHhCCccc---------cccc
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP------------RIWLDYGRFLMDQHKITQTRHVFDRALRALPITQ---------HHRV 144 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~ 144 (703)
|++++|...|++++.+.|+.+ .+|.+++.++...|++++|...++++|...|... ...+
T Consensus 23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a 102 (156)
T d2hr2a1 23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 102 (156)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence 889999999999999987643 5788999999999999999999999998765210 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q psy6461 145 WPLYLSFVKSHAVPETAVRVFRRYLKLFPED 175 (703)
Q Consensus 145 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 175 (703)
+...+..+...|++++|+..|++++++.|..
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4556788888999999999999999886654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.0035 Score=49.19 Aligned_cols=53 Identities=2% Similarity=-0.219 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHhCCc
Q psy6461 86 PSYEDVNNTFERSLVFMHKMP-RIWLDYGRFLMDQHKITQTRHVFDRALRALPI 138 (703)
Q Consensus 86 ~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 138 (703)
++.++++.+++.+++.+|.+. ..|..++..+.+.|++++|++.++++|+..|.
T Consensus 52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 455666666666666666544 46666666666666666666666666666663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.0034 Score=49.24 Aligned_cols=90 Identities=6% Similarity=-0.085 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCChHHHHH
Q psy6461 87 SYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQ---HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAVPETAVR 163 (703)
Q Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 163 (703)
++...+.-|.+...-.| ++...+.|+-++... .+++++..+|+.+++.+|.. ....|..++-.+.+.|++++|++
T Consensus 17 el~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~-~rd~lY~Lav~yyklgdy~~A~~ 94 (124)
T d2pqrb1 17 QLEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKR 94 (124)
T ss_dssp HHHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444555555544344 578999999999875 45678999999999988852 34667777777779999999999
Q ss_pred HHHHHHhhCCCCHHH
Q psy6461 164 VFRRYLKLFPEDAED 178 (703)
Q Consensus 164 ~~~~~l~~~p~~~~~ 178 (703)
.++++|+.+|++..+
T Consensus 95 ~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 95 YVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHccCCCcHHH
Confidence 999999999999754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.33 E-value=0.013 Score=47.41 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHhhccCcchHHHHHHHHHHHH--HHhcCchHHH
Q psy6461 531 KLERARDLFEQCLEACPPRYAKTLYLLYAKLEEEHGLARHAMAVYERATGAVLPEEMFEMFNIYIKKA--AEIYGIPKTR 608 (703)
Q Consensus 531 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~~A~ 608 (703)
++++|...|+++.+..-. ..+..++. ....+.++|+..|+++.+.....+ ....+.+... ....+..+|.
T Consensus 8 d~~~A~~~~~kaa~~g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a--~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM----FGCLSLVS--NSQINKQKLFQYLSKACELNSGNG--CRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT----THHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh----hhhhhhcc--ccccCHHHHHHHHhhhhcccchhh--hhhHHHhhhhccccchhhHHHH
Confidence 358999999999987422 24555543 345789999999999988654332 2222222221 0135678999
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccc
Q psy6461 609 QIYERAIESLPEEPTRQMCLKFAEMETK----LGEIDRARAIYAHCSQIC 654 (703)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a~~~~ 654 (703)
.+|+++.+... +. ....++.++.. ..+.++|..+|++|.+.-
T Consensus 80 ~~~~~aa~~g~--~~--a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLND--QD--GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTC--HH--HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCc--ch--HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999998642 23 56667777665 357999999999998874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.22 E-value=0.033 Score=44.90 Aligned_cols=110 Identities=7% Similarity=0.002 Sum_probs=72.2
Q ss_pred CchhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----c
Q psy6461 44 APKAIINTIYERSLKELPGSYKLWYNYLKLRRKQVKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMD----Q 119 (703)
Q Consensus 44 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~ 119 (703)
.|+++|...|+++.+.. ++.....++.. ...+.++|...|+++... +++.....++.++.. .
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~----------~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~ 72 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVSN----------SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVK 72 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHTC----------TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhccc----------cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccc
Confidence 36778888888887764 33333333211 124677888888888754 567888888887765 3
Q ss_pred cChHHHHHHHHHHHHhCCcccccccHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q psy6461 120 HKITQTRHVFDRALRALPITQHHRVWPLYLSFVKS----HAVPETAVRVFRRYLKL 171 (703)
Q Consensus 120 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~ 171 (703)
.+.++|..+|+++.+... +.....++.++.. ..+.++|...|+++.+.
T Consensus 73 ~d~~~A~~~~~~aa~~g~----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhhccCc----chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 467888888888887543 3444555555543 24567788888887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.72 E-value=0.83 Score=42.69 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=37.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREMLR 684 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 684 (703)
...+..+.|++.-...+++...+. +...+.+.+..+.-..++.+..++.++
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~----n~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNH----NNKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTT----CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHc----ChHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 344455677777777777765442 256799999999999999888887775
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.35 E-value=1.1 Score=41.75 Aligned_cols=108 Identities=11% Similarity=0.127 Sum_probs=65.5
Q ss_pred cccCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHhCCcccccccHHHHHHHHHhcCC
Q psy6461 78 VKGKVITDPSYEDVNNTFERSLVFMHKMPRIWLDYGRFLMDQHKITQTRHVFDRALRALPITQHHRVWPLYLSFVKSHAV 157 (703)
Q Consensus 78 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 157 (703)
.+..|...|.++.|..+|... .-|-..+.++...+++..|..+..++ +...+|......+.....
T Consensus 20 i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHHhCcH
Confidence 445566667888888888742 22344566777788888887776654 235789888887766654
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHhcCCHHHHHHHHHHhhc
Q psy6461 158 PETAVRVFRRYLKLFPEDAEDYIEYLSSIERLDEAAVKLAYIVN 201 (703)
Q Consensus 158 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 201 (703)
...| .+....+..+|+.....+..+...|.+++....|+.++.
T Consensus 85 ~~la-~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~ 127 (336)
T d1b89a_ 85 FRLA-QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 127 (336)
T ss_dssp HHHH-HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Confidence 4322 222222334555555667778888999999999988764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.46 E-value=3.8 Score=39.92 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHcCChHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy6461 400 KFYEVNDQLEDARLIFDKATLVPYTKVEDLATVWCEWAELELRAGQEEAALRLMARATA 458 (703)
Q Consensus 400 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 458 (703)
......++...+...+..+-.. +.+ .....+=.|+.+...|+.++|...|..+..
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~-~~~---~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPME-AKE---KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTT-GGG---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHhcCcc-ccc---HHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 3445567888888877765322 211 124445556667788888888888888765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.90 E-value=18 Score=34.77 Aligned_cols=50 Identities=10% Similarity=-0.094 Sum_probs=26.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q psy6461 630 FAEMETKLGEIDRARAIYAHCSQICDPRVTAGFWAAWKSFEITHGNEDTMREML 683 (703)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 683 (703)
.+..+...|....|+..+..++... ++.-....+.+..+.|-++-+....
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~~----~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKSK----SKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCChhHHHHHH
Confidence 3444555666666666665555432 2334445556666666666555443
|