Psyllid ID: psy6462

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MQLSWRRGEKKEKELDYQEFLMLDNELFSVLPSGRKASPTSGDESSKKSKKKKHKKDKKKKSKKSKKRKKKKYSSSSSSDSSSSSEDEWVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAKNKD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEEEEHHHHHEccccccccccccccccccccHHHcHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mqlswrrgekkekELDYQEFLMLDNElfsvlpsgrkasptsgdesskkskkkkhkkdkkkkskkskkrkkkkyssssssdsssssedewvdksavkssdsshssdsdnsdrdtvgpapkqhvTLTQKDygkallpgeGAAMAAYVAEgkriprrgeigltsdEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAKNKD
Flexible Loop (DISEMBL)
mqlswrrgekkekeldYQEFLMLDNELFSVLPsgrkasptsgdesskkskkkkhkkdkkkkskkskkrkkkkyssssssdsssssedewVDKSavkssdsshssdsdnsdrdtvgpapkqhvtlTQKDYGKALLPGEGAAMAAYVaegkriprrgeigltsdeieryeavgyvmsgsrhrrmeavrirkenqiysadeKRALAMfskeerqkrenriltqfkemvssklaknkd
Low Complexity Region (SEG)
MQLSWRRGEKKEKELDYQEFLMLDNELFSVLPSGRKASPTSGDEsskkskkkkhkkdkkkkskkskkrkkkkyssssssdsssssEDEWVDKSAVKssdsshssdsdnsdrdTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAKNKD
Disordered region (IsUnstruct)
******************EFLMLDNELF****************************************************************************************************YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMS***********************************************************
Disordered Region (DISOPRED)
******************EFLMLDNE***************************************************************************************************************GAA*AAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKEN*************************ILTQFKE***********
Disordered Region (DISEMBL)
************KELDYQEFLMLDNELFSVLPSG*********************************************************************************PAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV*********
Disordered Region (DISPRO)
****WRRGEKKEKELDYQEFLMLDNELFSVLP*********************************************************************************VGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLSWRRGEKKEKELDYQEFLMLDNELFSVLPSGRKASPTSGDESSKKSKKKKHKKDKKKKSKKSKKRKKKKYSSSSSSDSSSSSEDEWVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAKNKD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q9VB74	463	UPF0396 protein CG6066 OS	yes	N/A	0.512	0.259	0.818	3e-52
Q8N5F7	415	NF-kappa-B-activating pro	yes	N/A	0.508	0.286	0.713	3e-43
Q9D0F4	415	NF-kappa-B-activating pro	no	N/A	0.508	0.286	0.705	1e-42
Q4V7C9	415	NF-kappa-B-activating pro	no	N/A	0.508	0.286	0.705	2e-42
Q5M9Q1	402	NKAP-like protein OS=Homo	no	N/A	0.521	0.303	0.698	3e-42
Q55ED4	510	UPF0396 protein OS=Dictyo	yes	N/A	0.504	0.231	0.578	3e-37
Q4P4G8	577	UPF0396 protein UM04995 O	N/A	N/A	0.414	0.168	0.690	2e-35

>sp|Q9VB74|U396_DROME UPF0396 protein CG6066 OS=Drosophila melanogaster GN=CG6066 PE=1 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/121 (81%), Positives = 112/121 (92%), Gaps = 1/121 (0%)

Query: 114 VGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYV 173
           VGP+ +   +L QKD+GKALLPGEGAAMAAY+AEGKRIPRRGEIGLTSDEI  +E+VGYV
Sbjct: 342 VGPSLRPGGSLNQKDFGKALLPGEGAAMAAYIAEGKRIPRRGEIGLTSDEIANFESVGYV 401

Query: 174 MSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKL-AKN 232
           MSGSRHRRMEAVRIRKENQ+YSADEKRALAMFSKEERQKREN+IL+QFK+M+ SKL AK+
Sbjct: 402 MSGSRHRRMEAVRIRKENQLYSADEKRALAMFSKEERQKRENKILSQFKDMIHSKLQAKD 461

Query: 233 K 233
           K
Sbjct: 462 K 462

Drosophila melanogaster (taxid: 7227)

>sp|Q8N5F7|NKAP_HUMAN NF-kappa-B-activating protein OS=Homo sapiens GN=NKAP PE=1 SV=1

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 102/129 (79%), Gaps = 10/129 (7%)

Query: 112 DTVGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIE 165
           D +GP APK   TLT +D     YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI 
Sbjct: 289 DLIGPEAPK---TLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIA 345

Query: 166 RYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
            +E  GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV
Sbjct: 346 SFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMV 405

Query: 226 SSKLAKNKD 234
             K  K KD
Sbjct: 406 YRK-TKGKD 413

Acts as a transcriptional repressor. Plays a role as a transcriptional corepressor of the Notch-mediated signaling required for T-cell development. Also involved in the TNF and IL-1 induced NF-kappa-B activation. Associates with chromatin at the Notch-regulated SKP2 promoter.

Homo sapiens (taxid: 9606)

>sp|Q9D0F4|NKAP_MOUSE NF-kappa-B-activating protein OS=Mus musculus GN=Nkap PE=1 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 101/129 (78%), Gaps = 10/129 (7%)

Query: 112 DTVGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIE 165
           D +GP APK   TL  +D     YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI 
Sbjct: 289 DLIGPEAPK---TLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIA 345

Query: 166 RYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
            +E  GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV
Sbjct: 346 SFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMV 405

Query: 226 SSKLAKNKD 234
             K  K KD
Sbjct: 406 YRK-TKGKD 413

Acts as a transcriptional repressor. Plays a role as a transcriptional corepressor of the Notch-mediated signaling required for T-cell development. Also involved in the TNF and IL-1 induced NF-kappa-B activation. Associates with chromatin at the Notch-regulated SKP2 promoter.

Mus musculus (taxid: 10090)

>sp|Q4V7C9|NKAP_RAT NF-kappa-B-activating protein OS=Rattus norvegicus GN=Nkap PE=2 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 101/129 (78%), Gaps = 10/129 (7%)

Query: 112 DTVGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIE 165
           D +GP APK   TL  +D     YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI 
Sbjct: 289 DLIGPEAPK---TLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIA 345

Query: 166 RYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
            +E  GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV
Sbjct: 346 SFECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMV 405

Query: 226 SSKLAKNKD 234
             K  K KD
Sbjct: 406 YRK-TKGKD 413

Acts as a transcriptional repressor. Plays a role as a transcriptional corepressor of the Notch-mediated signaling required for T-cell development. Also involved in the TNF and IL-1 induced NF-kappa-B activation. Associates with chromatin at the Notch-regulated SKP2 promoter.

Rattus norvegicus (taxid: 10116)

>sp|Q5M9Q1|NKAPL_HUMAN NKAP-like protein OS=Homo sapiens GN=NKAPL PE=2 SV=3

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 100/126 (79%), Gaps = 4/126 (3%)

Query: 112 DTVGP-APKQHVTLTQKD--YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYE 168
           D +GP AP  H +  +K   YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI  +E
Sbjct: 276 DLIGPEAPIIHTSQDEKPLKYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIGSFE 335

Query: 169 AVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSK 228
             GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KRE++IL  F+EMV  K
Sbjct: 336 CSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRESKILASFREMVHKK 395

Query: 229 LAKNKD 234
             K KD
Sbjct: 396 -TKEKD 400

Homo sapiens (taxid: 9606)

>sp|Q55ED4|U396_DICDI UPF0396 protein OS=Dictyostelium discoideum GN=DDB_G0269284 PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 96/121 (79%), Gaps = 3/121 (2%)

Query: 109 SDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYE 168
           S+RD +GP P   V +    YG A++PGE  A+A +V E KRIPRRGE+GLTS++I  +E
Sbjct: 390 SNRD-IGPKPISEVQVGS--YGGAMMPGEAEAIAQFVKENKRIPRRGEVGLTSEQIASFE 446

Query: 169 AVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSK 228
             GYVMSGSRHRRM AVRIRKE+Q+YSA+E++ALAM ++EE+ KRENR+L  F++++++K
Sbjct: 447 ETGYVMSGSRHRRMNAVRIRKESQVYSAEEQKALAMLNREEKAKRENRLLADFRDLINTK 506

Query: 229 L 229
           L
Sbjct: 507 L 507

Dictyostelium discoideum (taxid: 44689)

>sp|Q4P4G8|U396_USTMA UPF0396 protein UM04995 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UM04995 PE=3 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 80/97 (82%)

Query: 129 YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIR 188
           YG ALLPGEG+AMA+YV +GKRIPRRGEIGLTSD+IE YE  GYVMSGSRH RM AVR+R
Sbjct: 470 YGGALLPGEGSAMASYVQDGKRIPRRGEIGLTSDQIEAYEKAGYVMSGSRHHRMNAVRMR 529

Query: 189 KENQIYSADEKRALAMFSKEERQKRENRILTQFKEMV 225
           KENQ+ SA+EKR +     EE+ K+E  I++QFKE+V
Sbjct: 530 KENQVISAEEKRTMLRLQAEEKAKKEREIVSQFKELV 566


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.120    0.316 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,324,358
Number of Sequences: 539616
Number of extensions: 3426323
Number of successful extensions: 85865
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 1106
Number of HSP's that attempted gapping in prelim test: 40263
Number of HSP's gapped (non-prelim): 23319
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
156552055	276	PREDICTED: hypothetical protein LOC10012	0.628	0.532	0.738	8e-57
91091624	299	PREDICTED: similar to CG6066 CG6066-PA [	0.623	0.488	0.731	1e-56
350399468	245	PREDICTED: UPF0396 protein CG6066-like [	0.632	0.604	0.744	2e-56
340721089	242	PREDICTED: UPF0396 protein CG6066-like [	0.632	0.611	0.744	2e-56
48097450	247	PREDICTED: hypothetical protein LOC40834	0.611	0.578	0.758	4e-56
307166102	269	NF-kappa-B-activating protein [Camponotu	0.636	0.553	0.763	9e-56
242016769	405	pre-mRNA-splicing factor cwc25, putative	0.576	0.333	0.763	1e-55
427786453	319	hypothetical protein [Rhipicephalus pulc	0.564	0.413	0.737	1e-54
193641197	244	PREDICTED: UPF0396 protein CG6066-like [	0.564	0.540	0.739	1e-54
322797586	274	hypothetical protein SINV_03184 [Solenop	0.611	0.521	0.765	2e-54

>gi|156552055|ref|XP_001604429.1| PREDICTED: hypothetical protein LOC100120828 [Nasonia vitripennis]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 110/149 (73%), Positives = 126/149 (84%), Gaps = 2/149 (1%)

Query: 88  EWVDKSAV--KSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYV 145
           +WV+KSAV  K      S+  ++ +   +GP  KQHVTL+ KD+GKALLPGEGAAMAAYV
Sbjct: 126 QWVEKSAVIAKPKVKKDSNSEESGEEGVLGPVQKQHVTLSAKDFGKALLPGEGAAMAAYV 185

Query: 146 AEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF 205
           AEGKRIPRRGEIGLTSDEI  YE+VGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF
Sbjct: 186 AEGKRIPRRGEIGLTSDEIASYESVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF 245

Query: 206 SKEERQKRENRILTQFKEMVSSKLAKNKD 234
           SKEERQKREN IL QF++M+S KLA+ ++
Sbjct: 246 SKEERQKRENLILGQFRDMISHKLAQEQN 274

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091624|ref|XP_969888.1| PREDICTED: similar to CG6066 CG6066-PA [Tribolium castaneum] gi|270001039|gb|EEZ97486.1| hypothetical protein TcasGA2_TC011325 [Tribolium castaneum]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 128/149 (85%), Gaps = 3/149 (2%)

Query: 86  EDEWVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYV 145
           E+EWV+K+   ++ +   ++++ ++   VGP  K H  LT K+ GKALLPGEGAAMAAYV
Sbjct: 154 EEEWVEKT---TTTNKPQTNAEETEEVIVGPILKPHAALTHKEMGKALLPGEGAAMAAYV 210

Query: 146 AEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF 205
           AEGKRIPRRGEIGLTS+EIE +EAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF
Sbjct: 211 AEGKRIPRRGEIGLTSEEIESFEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF 270

Query: 206 SKEERQKRENRILTQFKEMVSSKLAKNKD 234
           SKEERQKRENRIL QF+EMV+SKLA+ K+
Sbjct: 271 SKEERQKRENRILGQFREMVNSKLAEKKN 299

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399468|ref|XP_003485534.1| PREDICTED: UPF0396 protein CG6066-like [Bombus impatiens]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 124/149 (83%), Gaps = 1/149 (0%)

Query: 86  EDEWVDKSAVKS-SDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAY 144
           E EWV+K+ +   +     S SD S  + VGP  K HVTL+ KD+GKALLPGEGAAMAAY
Sbjct: 94  ELEWVEKNGINDKAKVKKGSSSDESGDEVVGPVQKPHVTLSAKDFGKALLPGEGAAMAAY 153

Query: 145 VAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAM 204
           VAEGKRIPRRGEIGLTS+EI  YE+VGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAM
Sbjct: 154 VAEGKRIPRRGEIGLTSEEIAAYESVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAM 213

Query: 205 FSKEERQKRENRILTQFKEMVSSKLAKNK 233
           FSKEERQKREN IL QF+EMV+ KLA+ +
Sbjct: 214 FSKEERQKRENLILGQFREMVNQKLAQEQ 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721089|ref|XP_003398958.1| PREDICTED: UPF0396 protein CG6066-like [Bombus terrestris]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 124/149 (83%), Gaps = 1/149 (0%)

Query: 86  EDEWVDKSAVKS-SDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAY 144
           E EWV+K+ +   +     S SD S  + VGP  K HVTL+ KD+GKALLPGEGAAMAAY
Sbjct: 91  ELEWVEKNGINDKAKVKKGSSSDESGDEVVGPVQKPHVTLSAKDFGKALLPGEGAAMAAY 150

Query: 145 VAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAM 204
           VAEGKRIPRRGEIGLTS+EI  YE+VGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAM
Sbjct: 151 VAEGKRIPRRGEIGLTSEEIAAYESVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAM 210

Query: 205 FSKEERQKRENRILTQFKEMVSSKLAKNK 233
           FSKEERQKREN IL QF+EMV+ KLA+ +
Sbjct: 211 FSKEERQKRENLILGQFREMVNQKLAQEQ 239

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48097450|ref|XP_391898.1| PREDICTED: hypothetical protein LOC408346 isoform 1 [Apis mellifera]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 122/145 (84%), Gaps = 2/145 (1%)

Query: 89  WVDKSAV--KSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVA 146
           WV+K+ +  K+     SS  ++ D   VGP  K HVTL+ KD+GKALLPGEGAAMAAYVA
Sbjct: 96  WVEKNGINDKAKIKKGSSSDESGDEGIVGPVQKPHVTLSAKDFGKALLPGEGAAMAAYVA 155

Query: 147 EGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFS 206
           EGKRIPRRGEIGLTS+EI  YEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFS
Sbjct: 156 EGKRIPRRGEIGLTSEEIAAYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFS 215

Query: 207 KEERQKRENRILTQFKEMVSSKLAK 231
           KEERQKREN IL QF+EMV+ KLA+
Sbjct: 216 KEERQKRENLILGQFREMVNQKLAQ 240

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166102|gb|EFN60354.1| NF-kappa-B-activating protein [Camponotus floridanus]

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 3/152 (1%)

Query: 86  EDEWVDKSAV--KSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAA 143
           E+ WV+K+AV  K      SS  D+ D  TVGPAPK HVTL+ KD+GKALLPGEGAAMAA
Sbjct: 118 EEVWVEKTAVTDKPRLRKGSSSDDSGDDGTVGPAPKPHVTLSAKDFGKALLPGEGAAMAA 177

Query: 144 YVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 203
           YVAEGKRIPRRGEIGLTS+EI  YE+VGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA
Sbjct: 178 YVAEGKRIPRRGEIGLTSEEIASYESVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 237

Query: 204 MFSKEERQKRENRILTQFKEMVSS-KLAKNKD 234
           MFSKEERQKREN IL QF+EM++  KLA+ K+
Sbjct: 238 MFSKEERQKRENLILGQFREMINQKKLAQEKN 269

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016769|ref|XP_002428901.1| pre-mRNA-splicing factor cwc25, putative [Pediculus humanus corporis] gi|212513683|gb|EEB16163.1| pre-mRNA-splicing factor cwc25, putative [Pediculus humanus corporis]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 119/144 (82%), Gaps = 9/144 (6%)

Query: 89  WVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEG 148
           WV+K  +         DSD  D   +GP PK  V L+ KDYGKALLPGEGAAMAAYVAEG
Sbjct: 267 WVEKDKI--------DDSDEED-GMIGPVPKAQVALSSKDYGKALLPGEGAAMAAYVAEG 317

Query: 149 KRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKE 208
           KRIPRRGEIGLTSD+I  +EAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKE
Sbjct: 318 KRIPRRGEIGLTSDQIAAFEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKE 377

Query: 209 ERQKRENRILTQFKEMVSSKLAKN 232
           ERQKRENRIL QF+EMV+SKLA +
Sbjct: 378 ERQKRENRILGQFREMVNSKLANH 401

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786453|gb|JAA58678.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 119/141 (84%), Gaps = 9/141 (6%)

Query: 89  WVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEG 148
           WVDK    +SD          D + +GP PKQHV L+ KDYGKALLPGEGAAMAAYVAEG
Sbjct: 184 WVDKRRENNSDD---------DDEVIGPLPKQHVQLSAKDYGKALLPGEGAAMAAYVAEG 234

Query: 149 KRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKE 208
           KRIPRRGEIGLTS+EIE +E+VGYVMSGSRHRRMEAVR+RKENQIYSADEKRALAMF++E
Sbjct: 235 KRIPRRGEIGLTSNEIESFESVGYVMSGSRHRRMEAVRLRKENQIYSADEKRALAMFNRE 294

Query: 209 ERQKRENRILTQFKEMVSSKL 229
           ERQKRE +IL+QFKE++ +KL
Sbjct: 295 ERQKRETKILSQFKEVIKAKL 315

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193641197|ref|XP_001950524.1| PREDICTED: UPF0396 protein CG6066-like [Acyrthosiphon pisum]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 116/142 (81%), Gaps = 10/142 (7%)

Query: 87  DEWVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVA 146
           DEW++K   K +             D VGP PK +VTLTQ++YG ALLPGEGAAMAAYV 
Sbjct: 109 DEWIEKKGAKEATID----------DMVGPLPKPNVTLTQREYGHALLPGEGAAMAAYVQ 158

Query: 147 EGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFS 206
           +GKRIPRRGEIGLT DEI  YE+VGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFS
Sbjct: 159 DGKRIPRRGEIGLTCDEISSYESVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFS 218

Query: 207 KEERQKRENRILTQFKEMVSSK 228
           KEERQKREN+ILTQF++MV SK
Sbjct: 219 KEERQKRENKILTQFRDMVKSK 240

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797586|gb|EFZ19627.1| hypothetical protein SINV_03184 [Solenopsis invicta]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/145 (76%), Positives = 123/145 (84%), Gaps = 2/145 (1%)

Query: 86  EDEWVDKSAV--KSSDSSHSSDSDNSDRDTVGPAPKQHVTLTQKDYGKALLPGEGAAMAA 143
           E+ WV+K+ +  K      SS  D+ D  TVGPAPK HVTL+ KD+GKALLPGEGAAMAA
Sbjct: 122 EEVWVEKTTITDKPKLKRASSSDDSGDDGTVGPAPKPHVTLSAKDFGKALLPGEGAAMAA 181

Query: 144 YVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 203
           YVAEGKRIPRRGEIGLTS+EI  YE+VGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA
Sbjct: 182 YVAEGKRIPRRGEIGLTSEEIASYESVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALA 241

Query: 204 MFSKEERQKRENRILTQFKEMVSSK 228
           MFSKEERQKREN IL QF+EM++ K
Sbjct: 242 MFSKEERQKRENLILGQFREMINHK 266

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
FB|FBgn0039488	463	CG6066 [Drosophila melanogaste	0.512	0.259	0.818	1.2e-47
UNIPROTKB|Q8N5F7	415	NKAP "NF-kappa-B-activating pr	0.5	0.281	0.716	2.3e-39
MGI|MGI:1914300	415	Nkap "NFKB activating protein"	0.512	0.289	0.709	3.7e-39
RGD|1565955	415	Nkap "NFKB activating protein"	0.512	0.289	0.709	3.7e-39
UNIPROTKB|G5E5D9	417	NKAP "Uncharacterized protein"	0.512	0.287	0.701	9.9e-39
UNIPROTKB|F1RUA7	417	NKAP "Uncharacterized protein"	0.512	0.287	0.701	9.9e-39
TAIR|locus:2132358	422	AT4G02720 "AT4G02720" [Arabido	0.5	0.277	0.550	3.3e-31
WB|WBGene00002696	504	let-504 [Caenorhabditis elegan	0.448	0.208	0.6	1.8e-29

FB|FBgn0039488 CG6066 [Drosophila melanogaster (taxid:7227)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 99/121 (81%), Positives = 112/121 (92%)

Query:   114 VGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYV 173
             VGP+ +   +L QKD+GKALLPGEGAAMAAY+AEGKRIPRRGEIGLTSDEI  +E+VGYV
Sbjct:   342 VGPSLRPGGSLNQKDFGKALLPGEGAAMAAYIAEGKRIPRRGEIGLTSDEIANFESVGYV 401

Query:   174 MSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKL-AKN 232
             MSGSRHRRMEAVRIRKENQ+YSADEKRALAMFSKEERQKREN+IL+QFK+M+ SKL AK+
Sbjct:   402 MSGSRHRRMEAVRIRKENQLYSADEKRALAMFSKEERQKRENKILSQFKDMIHSKLQAKD 461

Query:   233 K 233
             K
Sbjct:   462 K 462

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q8N5F7 NKAP "NF-kappa-B-activating protein" [Homo sapiens (taxid:9606)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 91/127 (71%), Positives = 101/127 (79%)

Query:   114 VGP-APKQHVTLTQKD-----YGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERY 167
             +GP APK   TLT +D     YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI  +
Sbjct:   291 IGPEAPK---TLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASF 347

Query:   168 EAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSS 227
             E  GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV  
Sbjct:   348 ECSGYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYR 407

Query:   228 KLAKNKD 234
             K  K KD
Sbjct:   408 K-TKGKD 413

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030851 "granulocyte differentiation" evidence=IEA

GO:0031490 "chromatin DNA binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0071425 "hematopoietic stem cell proliferation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1914300 Nkap "NFKB activating protein" [Mus musculus (taxid:10090)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 88/124 (70%), Positives = 99/124 (79%)

Query:   114 VGP-APKQHVTLTQK--DYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAV 170
             +GP APK   +   K  +YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI  +E  
Sbjct:   291 IGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECS 350

Query:   171 GYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLA 230
             GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV  K  
Sbjct:   351 GYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRK-T 409

Query:   231 KNKD 234
             K KD
Sbjct:   410 KGKD 413

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0030851 "granulocyte differentiation" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0033077 "T cell differentiation in thymus" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=ISO

GO:0071425 "hematopoietic stem cell proliferation" evidence=IMP

RGD|1565955 Nkap "NFKB activating protein" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 88/124 (70%), Positives = 99/124 (79%)

Query:   114 VGP-APKQHVTLTQK--DYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAV 170
             +GP APK   +   K  +YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI  +E  
Sbjct:   291 IGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECS 350

Query:   171 GYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLA 230
             GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV  K  
Sbjct:   351 GYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRK-T 409

Query:   231 KNKD 234
             K KD
Sbjct:   410 KGKD 413

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA;ISO

GO:0030097 "hemopoiesis" evidence=ISO

GO:0030851 "granulocyte differentiation" evidence=IEA;ISO

GO:0031490 "chromatin DNA binding" evidence=IEA;ISO

GO:0033077 "T cell differentiation in thymus" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=ISO;ISS

GO:0071425 "hematopoietic stem cell proliferation" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|G5E5D9 NKAP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 87/124 (70%), Positives = 99/124 (79%)

Query:   114 VGP-APKQHVTLTQK--DYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAV 170
             +GP APK   +   K  +YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI  +E  
Sbjct:   293 IGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECS 352

Query:   171 GYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLA 230
             GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV  K  
Sbjct:   353 GYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRK-T 411

Query:   231 KNKD 234
             K K+
Sbjct:   412 KGKE 415

GO:0071425 "hematopoietic stem cell proliferation" evidence=IEA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0031490 "chromatin DNA binding" evidence=IEA

GO:0030851 "granulocyte differentiation" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1RUA7 NKAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 87/124 (70%), Positives = 99/124 (79%)

Query:   114 VGP-APKQHVTLTQK--DYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAV 170
             +GP APK   +   K  +YG ALLPGEGAAMA YV  GKRIPRRGEIGLTS+EI  +E  
Sbjct:   293 IGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECS 352

Query:   171 GYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLA 230
             GYVMSGSRHRRMEAVR+RKENQIYSADEKRALA F++EER+KREN+IL  F+EMV  K  
Sbjct:   353 GYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRK-T 411

Query:   231 KNKD 234
             K K+
Sbjct:   412 KGKE 415

GO:0071425 "hematopoietic stem cell proliferation" evidence=IEA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0031490 "chromatin DNA binding" evidence=IEA

GO:0030851 "granulocyte differentiation" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

TAIR|locus:2132358 AT4G02720 "AT4G02720" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 65/118 (55%), Positives = 89/118 (75%)

Query:   114 VGPAPKQHVTLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYV 173
             VGP P          YG AL PGEG A+A YV +GKRIPRRGE+GL ++EI+++E +GYV
Sbjct:   287 VGPMPLPKAE-GHISYGGALRPGEGDAIAQYVQQGKRIPRRGEVGLNAEEIQKFEDLGYV 345

Query:   174 MSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAK 231
             MSGSRH+RM A+RIRKENQ+YSA++KRALAMF+ EE+ KRE ++++  + +V   + +
Sbjct:   346 MSGSRHQRMNAIRIRKENQVYSAEDKRALAMFNYEEKAKREAKVMSDLQRLVQRHMGE 403

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

WB|WBGene00002696 let-504 [Caenorhabditis elegans (taxid:6239)]

 Score = 329 (120.9 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 63/105 (60%), Positives = 80/105 (76%)

Query:   128 DYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRI 187
             +YGK LL GEGA MAAY A G+RIPRRGEIGL+S EI  YE VGYVMSGSRH+ MEA R+
Sbjct:   400 NYGKDLLKGEGAGMAAYAARGERIPRRGEIGLSSGEIAEYEKVGYVMSGSRHKAMEATRL 459

Query:   188 RKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAKN 232
             RKENQ+++A+EKR L   S E ++K+E  +L QF+ ++  K  +N
Sbjct:   460 RKENQVFTAEEKRILNSVSVEAKKKKEEAVLDQFRNLIHHKNMRN 504


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       177   0.00084  109 3  11 23  0.48    32
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.36u 0.21s 17.57t   Elapsed:  00:00:01
  Total cpu time:  17.36u 0.21s 17.57t   Elapsed:  00:00:01
  Start:  Thu Aug 15 13:26:21 2013   End:  Thu Aug 15 13:26:22 2013

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55ED4	U396_DICDI	No assigned EC number	0.5785	0.5042	0.2313	yes	N/A
Q9VB74	U396_DROME	No assigned EC number	0.8181	0.5128	0.2591	yes	N/A
Q8N5F7	NKAP_HUMAN	No assigned EC number	0.7131	0.5085	0.2867	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	234
pfam06047	105	pfam06047, SynMuv_product, Ras-induced vulval deve	1e-56
pfam05501	122	pfam05501, DUF755, Domain of unknown function (DUF	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.003

>gnl|CDD|114751 pfam06047, SynMuv_product, Ras-induced vulval development antagonist

 Score =  175 bits (445), Expect = 1e-56
 Identities = 79/103 (76%), Positives = 90/103 (87%)

Query: 126 QKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAV 185
              YG ALLPGEGAAMA YV +GKRIPRRGEIGLTS+EIE +E VGYVMSGSRH+RM AV
Sbjct: 3   PLSYGGALLPGEGAAMAQYVQKGKRIPRRGEIGLTSEEIENFEKVGYVMSGSRHKRMNAV 62

Query: 186 RIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSK 228
           RIRKENQ+YSA+EKRALAMF+ EER KREN+IL+QFKE++  K
Sbjct: 63  RIRKENQVYSAEEKRALAMFNYEERAKRENKILSQFKELIDRK 105

This family is from synthetic multi-vulval genes which encode chromatin-associated proteins involved in transcriptional repression. This protein has a role in antagonising Ras-induced vulval development. Length = 105

>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 23/53 (43%), Positives = 29/53 (54%)

Query: 35  RKASPTSGDESSKKSKKKKHKKDKKKKSKKSKKRKKKKYSSSSSSDSSSSSED 87
           RK    S     KK KK +H   +  K   +KKR++   SSSSSS SSSSS +
Sbjct: 68  RKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSSSSSSSSSSSSSSE 120

This family is predominated by ORFs from Circoviridae. The function of this family remains to be determined. Length = 122

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 36   KASPTSGDESSKKSKKKKHKKDKKKKSKKSKKRKKKKYSSSSSSDSSSSSEDEWVDKSAV 95
            K    S  ++++K K K   K           R+ +K  S SSS+    SE +       
Sbjct: 1322 KKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVD------- 1374

Query: 96   KSSDSSHSSDSDNSD 110
              S+     D ++ D
Sbjct: 1375 -DSEDEDDEDDEDDD 1388

Length = 1388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG2812|consensus	426		100.0
PF06047	104	SynMuv_product: Ras-induced vulval development ant	100.0
PF03457	68	HA: Helicase associated domain; InterPro: IPR00511	81.71

>KOG2812|consensus

Probab=100.00  E-value=4.2e-69  Score=499.47  Aligned_cols=137  Identities=66%  Similarity=1.022  Sum_probs=123.9

Q ss_pred             CCccCcccccccccCCCCCCCCCCCCCCCCccCCCCCc-cc--ccchhhhccccCCChhhhHHHHHHcCCCcCCCccCCC
Q psy6462          83 SSSEDEWVDKSAVKSSDSSHSSDSDNSDRDTVGPAPKQ-HV--TLTQKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGL  159 (234)
Q Consensus        83 es~Ed~WVEKsk~~~~~~~~~~~~~~~~~~~iGP~P~~-~~--~~~~~~yG~aLlpGEG~AmA~yv~~gkRIPRRGEiGl  159 (234)
                      ...+.+|.+++..            ++..++|||+|+. ++  ....-+||+|||||||+|||+||++|+||||||||||
T Consensus       285 ~~~e~~w~~k~~s------------e~~~~~igpe~~~s~~~ed~~pl~yG~aLlpGEGaamA~Yv~~GkRIPRRGEIGL  352 (426)
T KOG2812|consen  285 MISEAEWSEKVDS------------EEESGLIGPEAPGSHTSEDHKPLNYGKALLPGEGAAMAAYVAAGKRIPRRGEIGL  352 (426)
T ss_pred             hhhhhhhhhccch------------hhhccccCCCCCCCCCcCCCcccccccccCCCccHHHHHHHHhcCcCCcccccCc
Confidence            4568889999863            5778899999732 21  1223469999999999999999999999999999999


Q ss_pred             ChhhhhhhhhcceeecCCccchhhHhHhhhhcccccHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6462         160 TSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMFSKEERQKRENRILTQFKEMVSSKLAK  231 (234)
Q Consensus       160 tseeI~~~E~~GYVMSGSRH~RMnAvRlRKEnQvySAeEKRaLa~~n~EEr~krE~~il~~fremv~~k~~~  231 (234)
                      |++||+.|||+|||||||||+|||||||||||||||||||||||+||+||+++|||+||++|++||+++|+.
T Consensus       353 tSeEIa~fE~~GYVMSGSRHrrMeAvRlRKENQvySAdEKRaLasfn~Eer~KRE~kiLs~fr~mvh~k~~~  424 (426)
T KOG2812|consen  353 TSEEIASFECVGYVMSGSRHRRMEAVRLRKENQVYSADEKRALASFNQEERRKRENKILSQFREMVHRKTKE  424 (426)
T ss_pred             CHHHhhhhhhcceeeccchHHHHHHHHhhhhccccchHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999953

>PF06047 SynMuv_product: Ras-induced vulval development antagonist; InterPro: IPR009269 This is a family of eukaryotic proteins with undetermined function

Probab=100.00  E-value=1.6e-63  Score=394.66  Aligned_cols=103  Identities=78%  Similarity=1.198  Sum_probs=100.6

Q ss_pred             hhhhccccCCChhhhHHHHHHcCCCcCCCccCCCChhhhhhhhhcceeecCCccchhhHhHhhhhcccccHHHHHHHHhh
Q psy6462         126 QKDYGKALLPGEGAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYVMSGSRHRRMEAVRIRKENQIYSADEKRALAMF  205 (234)
Q Consensus       126 ~~~yG~aLlpGEG~AmA~yv~~gkRIPRRGEiGltseeI~~~E~~GYVMSGSRH~RMnAvRlRKEnQvySAeEKRaLa~~  205 (234)
                      ..+||+|||||||+|||+||++|||||||||||||++||+.||++|||||||||+||||||||||||||||||||||++|
T Consensus         2 ~~~yG~aLlpGEG~AmA~yv~~gkRIPRRGEIGltseeI~~~E~~GYVMSGSRh~rm~avR~rKEnQvysaeekral~~~   81 (104)
T PF06047_consen    2 PVNYGGALLPGEGAAMAAYVQQGKRIPRRGEIGLTSEEIASFEDVGYVMSGSRHRRMNAVRLRKENQVYSAEEKRALAMF   81 (104)
T ss_pred             ccccccccCCCchHHHHHHHHcCCCCCCCcccCCCHHHHHHHHhcCeeeeccchhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Q psy6462         206 SKEERQKRENRILTQFKEMVSSK  228 (234)
Q Consensus       206 n~EEr~krE~~il~~fremv~~k  228 (234)
                      |+|||++||++||++|++||++|
T Consensus        82 ~~eer~krE~~i~~~fr~lv~~k  104 (104)
T PF06047_consen   82 NKEERAKRENKILSQFRELVNRK  104 (104)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999864

>PF03457 HA: Helicase associated domain; InterPro: IPR005114 This short domain is found in multiple copies in bacterial helicase proteins

Probab=81.71  E-value=0.32  Score=34.55  Aligned_cols=45  Identities=29%  Similarity=0.628  Sum_probs=31.4

Q ss_pred             hhhccccCCCh----hhhHHHHHHcCCCcCCCccCCCChhhhhhhhhccee
Q psy6462         127 KDYGKALLPGE----GAAMAAYVAEGKRIPRRGEIGLTSDEIERYEAVGYV  173 (234)
Q Consensus       127 ~~yG~aLlpGE----G~AmA~yv~~gkRIPRRGEiGltseeI~~~E~~GYV  173 (234)
                      ..+|+...|-.    |-.++++|....+-=|.|.  ||.+.|+.++++|+|
T Consensus        20 ~~~G~~~vp~~~~~~~~~Lg~Wl~~qR~~~r~g~--L~~er~~~L~~lg~~   68 (68)
T PF03457_consen   20 EEHGHLNVPRDYVTDGFPLGQWLNNQRRKYRKGK--LTPERIERLDALGFW   68 (68)
T ss_dssp             HHHS--S-SS-----SSHHHHHHHHHHHHHHHT-----HHHHHHHHHHT--
T ss_pred             HHHCCCCCCcccCcCCCcHHHHHHHHHHHHHcCC--CCHHHHHHHHcCCCC
Confidence            34777777655    8999999999988888887  999999999999986

The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.; PDB: 2KTA_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00