Psyllid ID: psy6521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MNSAFRCIQSKNPCKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Secondary Structure (PSIPRED)
ccccccHHHcccccHHHcccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHEEcccccccEEEccccccccccEEEccccccccccHHHHcHEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mnsafrciqsknpcklAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Flexible Loop (DISEMBL)
mnsafrciqsknpcKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Low Complexity Region (SEG)
MNSAFRCIQSKNPCKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Disordered region (IsUnstruct)
*****RCIQSKNPCKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL**
Disordered Region (DISOPRED)
****************AFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVT********
Disordered Region (DISEMBL)
MNSAFRCIQSKNPCKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Disordered Region (DISPRO)
**SAFRCIQSKNPCKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSAFRCIQSKNPCKLAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVLPN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
B2RYT9	295	Translational activator o	yes	N/A	0.469	0.132	0.487	2e-05
Q0C5U8	252	Probable transcriptional	yes	N/A	0.445	0.146	0.513	3e-05
Q8K0Z7	294	Translational activator o	yes	N/A	0.433	0.122	0.5	5e-05
B8CXG6	253	Probable transcriptional	yes	N/A	0.433	0.142	0.5	6e-05
Q8RIE0	249	Probable transcriptional	yes	N/A	0.433	0.144	0.5	7e-05
B2A5L8	250	Probable transcriptional	yes	N/A	0.433	0.144	0.527	7e-05
B3GY39	246	Probable transcriptional	yes	N/A	0.506	0.170	0.476	7e-05
B0BQ92	246	Probable transcriptional	yes	N/A	0.506	0.170	0.476	7e-05
A3N1F5	246	Probable transcriptional	yes	N/A	0.506	0.170	0.476	7e-05
Q7VNF3	246	Probable transcriptional	yes	N/A	0.506	0.170	0.476	7e-05

>sp|B2RYT9|TACO1_RAT Translational activator of cytochrome c oxidase 1 OS=Rattus norvegicus GN=Taco1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query: 35 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          V +AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVK
Sbjct: 52 VAFAGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVK 90

Acts as a translational activator of mitochondrially-encoded cytochrome c oxidase 1.
Rattus norvegicus (taxid: 10116)

>sp|Q0C5U8|Y161_HYPNA Probable transcriptional regulatory protein HNE_0161 OS=Hyphomonas neptunium (strain ATCC 15444) GN=HNE_0161 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
          AGHSKW NI+H K  +D+++A LF  LSK++ +A K+
Sbjct: 2  AGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKM 38

Hyphomonas neptunium (strain ATCC 15444) (taxid: 228405)

>sp|Q8K0Z7|TACO1_MOUSE Translational activator of cytochrome c oxidase 1 OS=Mus musculus GN=Taco1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVK
Sbjct: 55 AGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVK 90

Acts as a translational activator of mitochondrially-encoded cytochrome c oxidase 1.

Mus musculus (taxid: 10090)

>sp|B8CXG6|Y1235_HALOH Probable transcriptional regulatory protein Hore_12350 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=Hore_12350 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW NI+H KA +D+++  LF+ LSK + +A +
Sbjct: 2  AGHSKWANIKHKKAKEDRKRGKLFSKLSKMITVAAR 37

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

>sp|Q8RIE0|Y1661_FUSNN Probable transcriptional regulatory protein FN1661 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=FN1661 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          +GHSKW NI+H K A+D+++A LFT   ++L +A K
Sbjct: 2  SGHSKWNNIQHRKGAQDKKRAKLFTKFGRELTIAAK 37

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

>sp|B2A5L8|Y1800_NATTJ Probable transcriptional regulatory protein Nther_1800 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=Nther_1800 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW NI+H KA  D+++  LF+ LSK++ +A K
Sbjct: 2  AGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAK 37

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

>sp|B3GY39|Y1210_ACTP7 Probable transcriptional regulatory protein APP7_1210 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=APP7_1210 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYV 79
          AGHSKW NI+H KAA+D ++  +FT L ++L  A K+    V
Sbjct: 2  AGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDV 43

Actinobacillus pleuropneumoniae serotype 7 (strain AP76) (taxid: 537457)

>sp|B0BQ92|Y1171_ACTPJ Probable transcriptional regulatory protein APJL_1171 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=APJL_1171 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYV 79
          AGHSKW NI+H KAA+D ++  +FT L ++L  A K+    V
Sbjct: 2  AGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDV 43

Actinobacillus pleuropneumoniae serotype 3 (strain JL03) (taxid: 434271)

>sp|A3N1F5|Y1151_ACTP2 Probable transcriptional regulatory protein APL_1151 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=APL_1151 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYV 79
          AGHSKW NI+H KAA+D ++  +FT L ++L  A K+    V
Sbjct: 2  AGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDV 43

Actinobacillus pleuropneumoniae serotype 5b (strain L20) (taxid: 416269)

>sp|Q7VNF3|Y596_HAEDU Probable transcriptional regulatory protein HD_0596 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=HD_0596 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYV 79
          AGHSKW NI+H KAA+D ++  +FT L ++L  A K+    V
Sbjct: 2  AGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKIGGGDV 43

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
242023839	273	conserved hypothetical protein [Pediculu	0.614	0.186	0.509	2e-07
91085333	264	PREDICTED: similar to AGAP001629-PA [Tri	0.457	0.143	0.657	4e-07
332375753	259	unknown [Dendroctonus ponderosae]	0.481	0.154	0.55	7e-06
170032456	560	cystinosin [Culex quinquefasciatus] gi|1	0.481	0.071	0.575	8e-06
157167701	277	hypothetical protein AaeL_AAEL002544 [Ae	0.614	0.184	0.528	1e-05
390463225	286	PREDICTED: translational activator of cy	0.554	0.160	0.450	2e-05
312385119	150	hypothetical protein AND_01147 [Anophele	0.433	0.24	0.611	2e-05
345486334	262	PREDICTED: translational activator of cy	0.445	0.141	0.567	3e-05
289743065	281	uncharacterized conserved protein [Gloss	0.662	0.195	0.446	3e-05
347966274	276	AGAP001629-PA [Anopheles gambiae str. PE	0.433	0.130	0.611	4e-05

>gi|242023839|ref|XP_002432338.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517761|gb|EEB19600.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query: 23 AKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          ++ N ++++ I  R+AGHSKW NI+H+K AKDQ +A+LF  LS K+ LA K
Sbjct: 20 SRCNFDVVNQISKRWAGHSKWSNIKHVKMAKDQARASLFNKLSYKISLAAK 70

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085333|ref|XP_970254.1| PREDICTED: similar to AGAP001629-PA [Tribolium castaneum] gi|270008427|gb|EFA04875.1| hypothetical protein TcasGA2_TC014933 [Tribolium castaneum]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query: 36 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          R AGHSKWQNIRHIK AKD  ++ LFT LS+++K+AV+
Sbjct: 25 RLAGHSKWQNIRHIKGAKDAARSLLFTKLSRQMKVAVQ 62

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375753|gb|AEE63017.1| unknown [Dendroctonus ponderosae]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 33 IPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAV 72
          I  R+AGHSKW NIRH+K  KD ++  LF  LS+++K+AV
Sbjct: 10 IAKRFAGHSKWANIRHVKGTKDAQRGLLFGKLSRQIKVAV 49

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032456|ref|XP_001844097.1| cystinosin [Culex quinquefasciatus] gi|167872567|gb|EDS35950.1| cystinosin [Culex quinquefasciatus]

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 31/40 (77%)

Query: 34  PVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
           P   AGHSKWQNIRHIKA  D  K+TLF  L+++++LA++
Sbjct: 311 PPALAGHSKWQNIRHIKALNDGRKSTLFIKLARQMRLAMQ 350

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167701|ref|XP_001655587.1| hypothetical protein AaeL_AAEL002544 [Aedes aegypti] gi|108882002|gb|EAT46227.1| AAEL002544-PA [Aedes aegypti]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 21 NVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          NV  + S  LS  P   AGHSKWQNIRHIKA  D  K+ LF  LS++++LA++
Sbjct: 20 NVRPVRSFHLS--PWNRAGHSKWQNIRHIKALNDGRKSVLFIKLSRQIRLAIQ 70

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390463225|ref|XP_003732995.1| PREDICTED: translational activator of cytochrome c oxidase 1 [Callithrix jacchus]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 5/51 (9%)

Query: 38  AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK-----VTHQYVVLPN 83
           AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVK     VTH+++ LP+
Sbjct: 58  AGHNKWSKVRHIKGPKDAERSRIFSKLALNIRLAVKGETLTVTHRWLPLPS 108

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312385119|gb|EFR29693.1| hypothetical protein AND_01147 [Anopheles darlingi]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKWQNIRH+KA  D  KA LF  L+++++LAV+
Sbjct: 33 AGHSKWQNIRHVKALNDGRKAVLFIKLARQIRLAVQ 68

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486334|ref|XP_003425452.1| PREDICTED: translational activator of cytochrome c oxidase 1-like [Nasonia vitripennis]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 29/37 (78%)

Query: 36 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAV 72
          R+AGH+KW NIRHIK A+D E+A+    L KK+K+A+
Sbjct: 22 RFAGHNKWSNIRHIKMARDSERASALQTLIKKMKIAI 58

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743065|gb|ADD20280.1| uncharacterized conserved protein [Glossina morsitans morsitans]

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 18 FSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          +  N + I   +L+  P+  AGHSKW NI+HIKA KD EKA +F  ++++L+LA++
Sbjct: 16 YCYNKSVIRRIVLTKYPL-LAGHSKWANIKHIKAEKDGEKAMVFLRVARQLRLAIQ 70

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966274|ref|XP_321468.5| AGAP001629-PA [Anopheles gambiae str. PEST] gi|333470135|gb|EAA00925.5| AGAP001629-PA [Anopheles gambiae str. PEST]

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKWQNIRH+KA  D  KA LF  L+++++LAV+
Sbjct: 34 AGHSKWQNIRHVKALNDGRKAVLFIKLARQIRLAVQ 69

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
RGD|1306784	295	Taco1 "translational activator	0.469	0.132	0.487	1.5e-06
UNIPROTKB|F1RRW7	294	TACO1 "Uncharacterized protein	0.518	0.146	0.434	3.3e-06
UNIPROTKB|E1BJK7	297	TACO1 "Uncharacterized protein	0.433	0.121	0.527	4.3e-06
CGD|CAL0002610	285	orf19.805 [Candida albicans (t	0.638	0.185	0.446	5.1e-06
UNIPROTKB|Q5AHJ1	285	CaO19.805 "Putative uncharacte	0.638	0.185	0.446	5.1e-06
MGI|MGI:1917457	294	Taco1 "translational activator	0.433	0.122	0.5	7e-06
UNIPROTKB|Q0C5U8	252	HNE_0161 "Probable transcripti	0.445	0.146	0.513	1.4e-05
UNIPROTKB|E2RFJ8	298	TACO1 "Uncharacterized protein	0.433	0.120	0.5	1.5e-05
UNIPROTKB|Q9BSH4	297	TACO1 "Translational activator	0.433	0.121	0.5	2e-05
UNIPROTKB|P0A8A0	246	yebC "conserved protein" [Esch	0.445	0.150	0.486	6.2e-05

RGD|1306784 Taco1 "translational activator of mitochondrially encoded cytochrome c oxidase I" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 19/39 (48%), Positives = 29/39 (74%)

Query:    35 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
             V +AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVK
Sbjct:    52 VAFAGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVK 90

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006417 "regulation of translation" evidence=IEA

UNIPROTKB|F1RRW7 TACO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query:    28 NILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
             ++ + +P   AGH+KW  +RHIK  KD E++ +F+ LS  ++LAVK
Sbjct:    48 HVTAAVP---AGHNKWSKVRHIKGPKDTERSRIFSKLSLSIRLAVK 90

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BJK7 TACO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query:    38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
             AGH+KW  +RHIK  KD E++ +F+ LS  ++LAVK
Sbjct:    58 AGHNKWSKVRHIKGPKDAERSRIFSKLSLSIRLAVK 93

GO:0005739 "mitochondrion" evidence=IEA

CGD|CAL0002610 orf19.805 [Candida albicans (taxid:5476)]

 Score = 111 (44.1 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query:    19 SLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
             S  +   N+N+  T+ VR+AGHSKWQNIRH KA  D  K+   T +S +++  V+V
Sbjct:    10 STRIRGANTNL--TL-VRFAGHSKWQNIRHDKAKNDARKSKEATLISGRIESCVRV 62

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AHJ1 CaO19.805 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 111 (44.1 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query:    19 SLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
             S  +   N+N+  T+ VR+AGHSKWQNIRH KA  D  K+   T +S +++  V+V
Sbjct:    10 STRIRGANTNL--TL-VRFAGHSKWQNIRHDKAKNDARKSKEATLISGRIESCVRV 62

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1917457 Taco1 "translational activator of mitochondrially encoded cytochrome c oxidase I" [Mus musculus (taxid:10090)]

 Score = 110 (43.8 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query:    38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
             AGH+KW  +RHIK  KD E++ +F+ L+  ++LAVK
Sbjct:    55 AGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVK 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C5U8 HNE_0161 "Probable transcriptional regulatory protein HNE_0161" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 106 (42.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query:    38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
             AGHSKW NI+H K  +D+++A LF  LSK++ +A K+
Sbjct:     2 AGHSKWANIQHRKGKQDKKRAVLFARLSKEITVASKM 38

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RFJ8 TACO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query:    38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
             AGH+KW  +RHIK  KD E++ +F+ L   ++LAVK
Sbjct:    59 AGHNKWSKVRHIKGPKDAERSRIFSKLCLSIRLAVK 94

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9BSH4 TACO1 "Translational activator of cytochrome c oxidase 1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query:    38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
             AGH+KW  +RHIK  KD E++ +F+ L   ++LAVK
Sbjct:    58 AGHNKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVK 93

GO:0006417 "regulation of translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P0A8A0 yebC "conserved protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 100 (40.3 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query:    38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
             AGHSKW N RH KAA+D ++  +FT + ++L  A K+
Sbjct:     2 AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKL 38

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0C5U8	Y161_HYPNA	No assigned EC number	0.5135	0.4457	0.1468	yes	N/A
Q0VRK0	Y750_ALCBS	No assigned EC number	0.5135	0.4457	0.1497	yes	N/A
Q9RGC3	Y472_MYCH2	No assigned EC number	0.5428	0.4216	0.1446	yes	N/A
Q65UP3	Y710_MANSM	No assigned EC number	0.5135	0.4457	0.1497	yes	N/A
A8LJ00	Y2762_DINSH	No assigned EC number	0.5135	0.4457	0.1504	yes	N/A
Q168H2	Y2018_ROSDO	No assigned EC number	0.5135	0.4457	0.1504	yes	N/A
B8F5G8	Y943_HAEPS	No assigned EC number	0.5135	0.4457	0.1504	yes	N/A
B2A5L8	Y1800_NATTJ	No assigned EC number	0.5277	0.4337	0.144	yes	N/A
Q4A9L4	Y471_MYCHJ	No assigned EC number	0.5428	0.4216	0.1446	yes	N/A
A6VQA7	Y1803_ACTSZ	No assigned EC number	0.5135	0.4457	0.1497	yes	N/A
Q4A7P8	Y474_MYCH7	No assigned EC number	0.5428	0.4216	0.1446	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
COG0217	241	COG0217, COG0217, Uncharacterized conserved protei	2e-10
TIGR01033	238	TIGR01033, TIGR01033, DNA-binding regulatory prote	5e-10
PRK00110	245	PRK00110, PRK00110, hypothetical protein; Validate	7e-10
pfam01709	234	pfam01709, Transcrip_reg, Transcriptional regulato	2e-09
PRK12378	235	PRK12378, PRK12378, hypothetical protein; Provisio	0.002

>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown]

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW NI+H KAA+D +++ +FT L K++ +A K
Sbjct: 2  AGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAK 37

Length = 241

>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
          AGHSKW NI+H KAA+D ++  +FT L K++ +A K+
Sbjct: 2  AGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKL 38

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein [Regulatory functions, DNA interactions]. Length = 238

>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated

 Score = 52.8 bits (128), Expect = 7e-10
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW NI+H K A+D ++  +FT L +++ +A K
Sbjct: 2  AGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAK 37

Length = 245

>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator

 Score = 51.7 bits (125), Expect = 2e-09
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 41 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          SKW NI+H KAA+D ++  +FT L K++ +A K
Sbjct: 1  SKWANIKHRKAAQDAKRGKIFTKLGKEITVAAK 33

This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region. Length = 234

>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 42 KWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
           W+NI+  KA KD  K+ +F  L K++ +A K
Sbjct: 4  AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAK 35

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PRK00110	245	hypothetical protein; Validated	99.8
TIGR01033	238	DNA-binding regulatory protein, YebC/PmpR family.	99.8
COG0217	241	Uncharacterized conserved protein [Function unknow	99.78
PRK12378	235	hypothetical protein; Provisional	99.7
KOG2972|consensus	276		99.7
PF01709	234	Transcrip_reg: Transcriptional regulator; InterPro	99.55
PRK07562	1220	ribonucleotide-diphosphate reductase subunit alpha	90.46

>PRK00110 hypothetical protein; Validated

Probab=99.80  E-value=5.9e-20  Score=138.69  Aligned_cols=45  Identities=38%  Similarity=0.607  Sum_probs=43.6

Q ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |+|||||+||||+|+++|++|+++|+||+|||++|||+|||||..
T Consensus         1 maGHskW~~Ikh~K~~~D~kksk~f~kl~reI~vAak~GG~DP~~   45 (245)
T PRK00110          1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEG   45 (245)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            799999999999999999999999999999999999999999864

>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family

Probab=99.80  E-value=7.1e-20  Score=137.48  Aligned_cols=45  Identities=42%  Similarity=0.626  Sum_probs=43.7

Q ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |+|||||+||||+|+++|++|+++|+||+|+|++|||+|||||..
T Consensus         1 maGHskw~~Ikh~K~~~D~~ksk~f~kl~r~I~vA~k~GG~DP~~   45 (238)
T TIGR01033         1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGGGDPES   45 (238)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            799999999999999999999999999999999999999999875

This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.

>COG0217 Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.6e-19  Score=137.32  Aligned_cols=45  Identities=42%  Similarity=0.628  Sum_probs=43.8

Q ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |+|||||.||+|+|+++|++|+|+|+||+|||++|||.|||||..
T Consensus         1 MaGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg~dP~~   45 (241)
T COG0217           1 MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPES   45 (241)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            899999999999999999999999999999999999999999864

>PRK12378 hypothetical protein; Provisional

Probab=99.70  E-value=1.8e-17  Score=124.69  Aligned_cols=43  Identities=33%  Similarity=0.478  Sum_probs=41.2

Q ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        38 aGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      ||| ||+||||+|+++|++|+++|+||+|||++|||+|||||..
T Consensus         1 ~g~-kW~~Ikh~K~~~Da~ksk~f~kl~reI~vA~k~GG~dP~~   43 (235)
T PRK12378          1 MGR-AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPES   43 (235)
T ss_pred             CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            687 9999999999999999999999999999999999999874

>KOG2972|consensus

Probab=99.70  E-value=1.1e-17  Score=129.14  Aligned_cols=56  Identities=34%  Similarity=0.452  Sum_probs=53.5

Q ss_pred             cccccccCccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          26 NSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        26 ~~r~~sts~~~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      -.|.+++|+..|+||+||++|||+|+++|++|+|++.+|+++|..|||.||+||+|
T Consensus        18 ~s~sv~~s~~~~sgH~kwskIk~~Kg~nD~~rsk~~nkl~~~i~~aVk~gg~np~l   73 (276)
T KOG2972|consen   18 RSRSVTTSGWIMSGHNKWSKIKHKKGANDQARSKQINKLSQGIILAVKQGGANPEL   73 (276)
T ss_pred             chhheecccceecccchhhhhcccccccHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence            44788999999999999999999999999999999999999999999999999987

>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins

Probab=99.55  E-value=3.4e-16  Score=116.84  Aligned_cols=41  Identities=46%  Similarity=0.672  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          41 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        41 sKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |||+||||+|+++|++|+++|+||+|||++|||+|||||..
T Consensus         1 sKW~nIkh~K~~~D~~ksk~f~kl~reI~~Avk~GG~DP~~   41 (234)
T PF01709_consen    1 SKWSNIKHKKAAQDAKKSKLFTKLSREITVAVKEGGPDPDM   41 (234)
T ss_dssp             -SCGGTSSSTTTTTTSHHHHHHHHHHHHHHHHHCC-S-GGG
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            69999999999999999999999999999999999999974

This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.

>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated

Probab=90.46  E-value=0.26  Score=45.34  Aligned_cols=38  Identities=13%  Similarity=0.029  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc------CCCcc
Q psy6521          43 WQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVT------HQYVV   80 (83)
Q Consensus        43 WsnIKhkKaa~DakKsKifsKl~KeI~vAaK~G------Gp~~~   80 (83)
                      |.+.+..|.+.+..++++++|+.++|+.|+|.|      |+||.
T Consensus       296 ~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~  339 (1220)
T PRK07562        296 WKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPA  339 (1220)
T ss_pred             hccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCcc
Confidence            333446799999999999999999999999999      56654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	83
1kon_A	249	Crystal Structure Of E.Coli Yebc Length = 249		5e-05
4f3q_A	247	Structure Of A Yebc Family Protein (Cbu_1566) From		5e-05

>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV 74
          AGHSKW N RH KAA+D ++  +FT + ++L  A K+
Sbjct: 5  AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKL 41

>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYV 79
          AGHSKW NI+H KA +D ++  +FT L +++ +A ++  + +
Sbjct: 5  AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDI 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	1e-10
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	1e-10
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	1e-10
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	9e-04

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHS W  I+H KA  D ++  LF+ L +++ +A +
Sbjct: 2  AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATR 37

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW N RH KAA+D ++  +FT + ++L  A K
Sbjct: 5  AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAK 40

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW NI+H KA +D ++  +FT L +++ +A +
Sbjct: 5  AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAAR 40

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240

 Score = 34.8 bits (81), Expect = 9e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 42 KWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
           ++  R  K  +  + + +F  L+K + LA K
Sbjct: 4  AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAK 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
4f3q_A	247	Transcriptional regulatory protein CBU_1566; YEBC	99.82
1kon_A	249	Protein YEBC, YEBC; alpha/beta, two-domains, montr	99.79
1lfp_A	249	Hypothetical protein AQ_1575; NEW fold, thermostab	99.77
1mw7_A	240	Hypothetical protein HP0162; structural genomics,	99.66

>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}

Probab=99.82  E-value=5.8e-21  Score=143.71  Aligned_cols=46  Identities=35%  Similarity=0.647  Sum_probs=38.9

Q ss_pred             ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          36 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        36 ~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      .|+|||||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus         3 ~maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~   48 (247)
T 4f3q_A            3 AMAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDS   48 (247)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            4999999999999999999999999999999999999999999964

>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1

Probab=99.79  E-value=4.2e-21  Score=144.70  Aligned_cols=47  Identities=38%  Similarity=0.555  Sum_probs=37.1

Q ss_pred             cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          35 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        35 ~~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      .+|||||||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus         2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~   48 (249)
T 1kon_A            2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDA   48 (249)
T ss_dssp             ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            46999999999999999999999999999999999999999999864

>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1

Probab=99.77  E-value=8.4e-21  Score=143.04  Aligned_cols=45  Identities=31%  Similarity=0.585  Sum_probs=39.9

Q ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |||||||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus         1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~   45 (249)
T 1lfp_A            1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEF   45 (249)
T ss_dssp             ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            899999999999999999999999999999999999999999964

>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1

Probab=99.66  E-value=9.7e-18  Score=125.73  Aligned_cols=43  Identities=21%  Similarity=0.222  Sum_probs=22.0

Q ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        38 aGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      || |||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus         1 aG-sKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~   43 (240)
T 1mw7_A            1 MG-RAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDT   43 (240)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTTCSCGGG
T ss_pred             CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            68 99999999999999999999999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d1kona_	244	e.39.1.1 (A:) Hypothetical protein YebC {Escherich	7e-12
d1lfpa_	243	e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex	3e-09

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (136), Expect = 7e-12
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 39 GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          GHSKW N RH KAA+D ++  +FT + ++L  A K
Sbjct: 1  GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAK 35

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

 Score = 49.3 bits (117), Expect = 3e-09
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 41 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          S W  I+H KA  D ++  LF+ L +++ +A +
Sbjct: 1  SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATR 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1kona_	244	Hypothetical protein YebC {Escherichia coli [TaxId	99.76
d1lfpa_	243	Hypothetical protein aq1575 {Aquifex aeolicus [Tax	99.61

>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.2e-20  Score=137.86  Aligned_cols=43  Identities=40%  Similarity=0.592  Sum_probs=37.1

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          39 GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        39 GHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |||||+||||+|+++|++|+++|+||+|+|++|||+|||||..
T Consensus         1 GHsKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG~DP~~   43 (244)
T d1kona_           1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDA   43 (244)
T ss_dssp             CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            8999999999999999999999999999999999999999974

>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein aq1575
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.61  E-value=7.6e-18  Score=122.26  Aligned_cols=41  Identities=27%  Similarity=0.522  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521          41 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL   81 (83)
Q Consensus        41 sKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~   81 (83)
                      |||+||||+|+++|++|+++|+||+|+|++|||+|||||..
T Consensus         1 SkW~nIkh~K~~~D~~r~k~f~k~~r~I~~A~k~GG~DP~~   41 (243)
T d1lfpa_           1 SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEF   41 (243)
T ss_dssp             CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            69999999999999999999999999999999999999964