Psyllid ID: psy6533

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
EEEEEDEKKKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANAEFLTNNPMYF
cHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEcccccccccccEEEEEEcccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccEEEcccccccccccEEEccccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHcccccccccccccc
cccccccHcccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccccccEEEcccEEEcccHHHHHHHHHHHHHcccccccEEEEEEEEccccEEccccccccccccccccccEEEEccccccccccccccccEEEEEEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccEEccccccccccccccccccccEEEcEEcccccEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHHEHEcccccccccHHHHHHHHHHHHHHHEccccccccccccccccccccccHcccccccc
EEEEEDEKKKKKKKKKEEEEKKQKKQKkkkkkvnkvkpVHIIFYRDGVSEGQFQAVMrrcgpcsnrsvaglsYTIFTGAEISAIKRACQgveanynpkVTFLVVQkrhhtrffptspsegdgsrnnnvrpgtivdttithptdldfyLVSHQSIQVGILTQCIKEktvfkmnpattgNILLKINAKLNginhyvnkvkPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQgveanynpkVTFLVVQkrhhtrffptspsegdgsrnnnvrpgtivdttithptdldFYLVSHQsiqgtarptkyyrlwdeynltddeTEEMTYYLCHLfsrctrsvsypaptyyAHLAAFRGRVyiknrhldmnnlprenqVHQANAefltnnpmyf
eeeeedekkkkkkkkkeeeekkqkkqkkkkkkvnkvkpvhiifyrdgvsegqFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTrffptspsegdgsrnnnVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTrffptspsegdgsrnnnVRPGTIVDTTITHPTDLDFYLVSHQsiqgtarptkyyrlWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQanaefltnnpmyf
eeeeedekkkkkkkkkeeeekkqkkqkkkkkkVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANAEFLTNNPMYF
*************************************PVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF*****************GTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF*****************GTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDM************************
*******************EKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTS*********NNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKM*******ILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPT***********NVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRV**************************TNNPMYF
***********************************VKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFP*********RNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFP*********RNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANAEFLTNNPMYF
**********KKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSP*E*DGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN*****************************
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xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVNKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANAEFLTNNPMYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
Q9XGW1988 Protein argonaute 10 OS=A yes N/A 0.439 0.172 0.549 8e-52
Q9UKV8859 Protein argonaute-2 OS=Ho yes N/A 0.431 0.194 0.559 8e-52
O77503840 Protein argonaute-2 (Frag yes N/A 0.431 0.198 0.559 8e-52
Q6QME8860 Protein argonaute-2 OS=Bo yes N/A 0.431 0.194 0.559 8e-52
Q8CJG0860 Protein argonaute-2 OS=Mu yes N/A 0.431 0.194 0.559 1e-51
Q9QZ81860 Protein argonaute-2 OS=Ra yes N/A 0.431 0.194 0.559 2e-51
Q6DCX2862 Protein argonaute-2 OS=Xe N/A N/A 0.431 0.193 0.553 2e-51
Q6DJB9871 Protein argonaute-2 OS=Xe yes N/A 0.431 0.191 0.553 3e-51
Q69VD5979 Protein argonaute PNH1 OS yes N/A 0.413 0.163 0.559 3e-50
O043791048 Protein argonaute 1 OS=Ar no N/A 0.436 0.161 0.541 3e-50
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function desciption
 Score =  204 bits (520), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%)

Query: 198 KPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTS 257
           KP+ IIFYRDGVSEGQF  V+  E+ AI++AC  +E NY P VTF+VVQKRHHTR F  +
Sbjct: 786 KPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANN 845

Query: 258 PSEGDGS-RNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDD 316
             + + + R+ N+ PGT+VDT I HPT+ DFYL SH  IQGT+RP  Y+ LWDE N T D
Sbjct: 846 HRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTAD 905

Query: 317 ETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLP 367
             + +T  LC+ ++RCTRSVS   P YYAHLAAFR R Y++   +  N  P
Sbjct: 906 GIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSP 956
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for reliable formation of primary and axillary shoot apical meristems. Specifies leaf adaxial identity by repressing the miR165 and miR166 microRNAs in the embryonic shoot apex, in the shoot apical meristem (SAM) and leaf. Represses the microRNA miR398 which targets CCS1 chaperone mRNAs for translational inhibition. Acts as a negative regulator of AGO1 protein level. Like AGO1, is required for stem cell function and organ polarity. Unlike AGO1, is not subjected to small RNA-mediated repression itself. Essential for multiple processes in development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9UKV8|AGO2_HUMAN Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1 SV=3 Back     alignment and function description
>sp|O77503|AGO2_RABIT Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus GN=EIF2C2 PE=1 SV=2 Back     alignment and function description
>sp|Q6QME8|AGO2_BOVIN Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 SV=1 Back     alignment and function description
>sp|Q8CJG0|AGO2_MOUSE Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1 SV=3 Back     alignment and function description
>sp|Q9QZ81|AGO2_RAT Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2 PE=2 SV=2 Back     alignment and function description
>sp|Q6DCX2|AGO2_XENLA Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DJB9|AGO2_XENTR Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c2 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
345497913 956 PREDICTED: protein argonaute-2-like [Nas 0.485 0.196 0.651 1e-70
156546430 1060 PREDICTED: protein argonaute-2-like [Nas 0.656 0.239 0.507 5e-68
429137925 982 Ago2 [Aphis glycines] 0.493 0.194 0.588 1e-63
328718138 957 PREDICTED: protein argonaute-2-like [Acy 0.493 0.199 0.588 6e-63
239791844297 ACYPI008293 [Acyrthosiphon pisum] 0.493 0.643 0.588 1e-62
167234453 856 Argonaute-2a [Tribolium castaneum] gi|27 0.666 0.301 0.473 7e-61
238801215 992 argonaute 2 [Aedes aegypti] gi|403182580 0.490 0.191 0.569 2e-60
167234415 879 Argonaute-2b [Tribolium castaneum] 0.666 0.293 0.473 3e-59
270008178 904 argonaute-2b [Tribolium castaneum] 0.666 0.285 0.473 3e-59
164415010285 argonaute 2 [Ochlerotatus triseriatus] 0.498 0.677 0.565 6e-59
>gi|345497913|ref|XP_001607156.2| PREDICTED: protein argonaute-2-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 153/192 (79%), Gaps = 4/192 (2%)

Query: 198 KPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTS 257
           KP  +IFYRDGVS+GQF  +M AE+ AI+ ACQ +EA+Y PK+TFLVVQKRHHTR FPT 
Sbjct: 766 KPERLIFYRDGVSDGQFGQIMHAELLAIRNACQSIEADYRPKITFLVVQKRHHTRLFPTD 825

Query: 258 PSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDE 317
           PS  D  RN NV+ GTIVDT ITHP+ +DFYLVSH SIQGTARPTKY  LWD+ ++++DE
Sbjct: 826 PSNSD-DRNFNVQAGTIVDTEITHPSHIDFYLVSHASIQGTARPTKYRCLWDDSDMSEDE 884

Query: 318 TEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANA 377
            E +TY+LCH+FSRCTRSVSYP PTYYAHLAAFR R  I++ H+DMNNLP+E Q+ +   
Sbjct: 885 IENLTYFLCHMFSRCTRSVSYPTPTYYAHLAAFRARALIQDVHIDMNNLPQE-QLRKLTI 943

Query: 378 --EFLTNNPMYF 387
             E L ++PM+F
Sbjct: 944 KDEVLKDSPMFF 955

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156546430|ref|XP_001607164.1| PREDICTED: protein argonaute-2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|429137925|gb|AFZ74933.1| Ago2 [Aphis glycines] Back     alignment and taxonomy information
>gi|328718138|ref|XP_001944852.2| PREDICTED: protein argonaute-2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|239791844|dbj|BAH72335.1| ACYPI008293 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|167234453|ref|NP_001107842.1| Argonaute-2a [Tribolium castaneum] gi|270015142|gb|EFA11590.1| argonaute-2a [Tribolium castaneum] Back     alignment and taxonomy information
>gi|238801215|gb|ACR56327.1| argonaute 2 [Aedes aegypti] gi|403182580|gb|EJY57488.1| AAEL017251-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|167234415|ref|NP_001107828.1| Argonaute-2b [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270008178|gb|EFA04626.1| argonaute-2b [Tribolium castaneum] Back     alignment and taxonomy information
>gi|164415010|gb|ABY52974.1| argonaute 2 [Ochlerotatus triseriatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
FB|FBgn00870351214 AGO2 "Argonaute 2" [Drosophila 0.472 0.150 0.518 5.3e-57
UNIPROTKB|F1PQZ7813 EIF2C2 "Uncharacterized protei 0.428 0.204 0.562 4.3e-56
UNIPROTKB|O77503840 EIF2C2 "Protein argonaute-2" [ 0.428 0.197 0.562 6.4e-56
UNIPROTKB|Q9UKV8859 EIF2C2 "Protein argonaute-2" [ 0.428 0.193 0.562 8.2e-56
UNIPROTKB|B0JYP5860 EIF2C2 "Protein argonaute-2" [ 0.428 0.193 0.562 8.3e-56
MGI|MGI:2446632860 Ago2 "argonaute RISC catalytic 0.428 0.193 0.562 8.3e-56
UNIPROTKB|Q6QME8860 EIF2C2 "Protein argonaute-2" [ 0.428 0.193 0.562 1.1e-55
RGD|621255860 Ago2 "argonaute RISC catalytic 0.428 0.193 0.562 1.1e-55
UNIPROTKB|F1NL39856 LOC100858102 "Uncharacterized 0.428 0.193 0.556 2.2e-55
UNIPROTKB|Q6DCX2862 eif2c2 "Protein argonaute-2" [ 0.428 0.192 0.556 3.1e-55
FB|FBgn0087035 AGO2 "Argonaute 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 494 (179.0 bits), Expect = 5.3e-57, Sum P(2) = 5.3e-57
 Identities = 99/191 (51%), Positives = 127/191 (66%)

Query:   199 PVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSP 258
             P HII+YRDGVS+GQF  + + E+  IK+AC  V     PK+  ++V KRHHTRFFP S 
Sbjct:  1029 PDHIIYYRDGVSDGQFPKIKNEELRCIKQACDKVGCK--PKICCVIVVKRHHTRFFP-SG 1085

Query:   259 SEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDET 318
                  ++ NNV PGT+VD TI HP ++ F++VSHQ+IQGTA+PT+Y  + +  NL  D  
Sbjct:  1086 DVTTSNKFNNVDPGTVVDRTIVHPNEMQFFMVSHQAIQGTAKPTRYNVIENTGNLDIDLL 1145

Query:   319 EEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK--NRHLDMNNLPRENQVHQAN 376
             +++TY LCH+F RC RSVSYPAP Y AHL A RGRVY+   NR LD   L +E       
Sbjct:  1146 QQLTYNLCHMFPRCNRSVSYPAPAYLAHLVAARGRVYLTGTNRFLD---LKKEYAKRTIV 1202

Query:   377 AEFLTNNPMYF 387
              EF+  NPMYF
Sbjct:  1203 PEFMKKNPMYF 1213
GO:0006413 "translational initiation" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP;IDA
GO:0016442 "RNA-induced silencing complex" evidence=IDA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0030423 "targeting of mRNA for destruction involved in RNA interference" evidence=TAS
GO:0016246 "RNA interference" evidence=IDA;NAS;IMP;TAS
GO:0048102 "autophagic cell death" evidence=IEP
GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP
GO:0035197 "siRNA binding" evidence=IDA
GO:0035087 "siRNA loading onto RISC involved in RNA interference" evidence=IDA;IMP
GO:0035190 "syncytial nuclear migration" evidence=IMP
GO:0007349 "cellularization" evidence=IMP
GO:0007279 "pole cell formation" evidence=IMP
GO:0004521 "endoribonuclease activity" evidence=IDA
GO:0035195 "gene silencing by miRNA" evidence=IMP
GO:0051607 "defense response to virus" evidence=IMP
GO:0033227 "dsRNA transport" evidence=IMP
GO:0007367 "segment polarity determination" evidence=IGI
GO:0070578 "RISC-loading complex" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0045071 "negative regulation of viral genome replication" evidence=IMP
GO:0070868 "heterochromatin organization involved in chromatin silencing" evidence=IMP
UNIPROTKB|F1PQZ7 EIF2C2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O77503 EIF2C2 "Protein argonaute-2" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKV8 EIF2C2 "Protein argonaute-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2446632 Ago2 "argonaute RISC catalytic subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QME8 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621255 Ago2 "argonaute RISC catalytic component 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NL39 LOC100858102 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DCX2 eif2c2 "Protein argonaute-2" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UKV8AGO2_HUMAN3, ., 1, ., 2, 6, ., n, 20.55950.43150.1944yesN/A
O77503AGO2_RABIT3, ., 1, ., 2, 6, ., n, 20.55950.43150.1988yesN/A
Q9QZ81AGO2_RAT3, ., 1, ., 2, 6, ., n, 20.55950.43150.1941yesN/A
A3KPK0AGO3_DANRENo assigned EC number0.56360.42370.1906yesN/A
Q8CJG0AGO2_MOUSE3, ., 1, ., 2, 6, ., n, 20.55950.43150.1941yesN/A
Q9XGW1AGO10_ARATHNo assigned EC number0.54970.43920.1720yesN/A
Q69VD5PNH1_ORYSJNo assigned EC number0.55900.41340.1634yesN/A
Q6DJB9AGO2_XENTR3, ., 1, ., 2, 6, ., n, 20.55350.43150.1917yesN/A
Q6QME8AGO2_BOVIN3, ., 1, ., 2, 6, ., n, 20.55950.43150.1941yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 2e-96
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-70
pfam02171296 pfam02171, Piwi, Piwi domain 9e-64
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 2e-48
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 2e-48
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 6e-46
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 3e-44
smart00950301 smart00950, Piwi, This domain is found in the prot 2e-34
pfam02171296 pfam02171, Piwi, Piwi domain 5e-31
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 2e-24
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 6e-24
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 1e-23
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-11
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-06
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 1e-04
pfam10278178 pfam10278, Med19, Mediator of RNA pol II transcrip 1e-04
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 3e-04
pfam00183529 pfam00183, HSP90, Hsp90 protein 3e-04
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 4e-04
pfam08496154 pfam08496, Peptidase_S49_N, Peptidase family S49 N 4e-04
pfam08597242 pfam08597, eIF3_subunit, Translation initiation fa 6e-04
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 8e-04
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 0.001
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 0.001
pfam10278178 pfam10278, Med19, Mediator of RNA pol II transcrip 0.001
pfam00183 529 pfam00183, HSP90, Hsp90 protein 0.001
pfam06658142 pfam06658, DUF1168, Protein of unknown function (D 0.001
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 0.002
cd04659404 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_Pro 0.002
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 0.003
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 0.003
pfam06658142 pfam06658, DUF1168, Protein of unknown function (D 0.003
PRK12280158 PRK12280, rplW, 50S ribosomal protein L23; Reviewe 0.003
pfam08208193 pfam08208, RNA_polI_A34, DNA-directed RNA polymera 0.004
pfam09428130 pfam09428, DUF2011, Fungal protein of unknown func 0.004
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  293 bits (753), Expect = 2e-96
 Identities = 96/162 (59%), Positives = 116/162 (71%), Gaps = 1/162 (0%)

Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
               P  II+YRDGVSEGQF  V++ E+ AI++AC  +   Y PK+TF+VVQKRHHTRFF
Sbjct: 266 TGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFF 325

Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
           PT   + DG +N NV PGT+VD  ITHP + DFYL SH  IQGTARPT Y+ LWDE   T
Sbjct: 326 PTDEDDADG-KNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFT 384

Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYI 356
            DE + +TY LC+ ++RCTRSVS P P YYAHLAA R R Y+
Sbjct: 385 ADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19 Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal Back     alignment and domain information
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19 Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) Back     alignment and domain information
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed Back     alignment and domain information
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 Back     alignment and domain information
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
PLN03202900 protein argonaute; Provisional 100.0
KOG1041|consensus876 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
KOG1042|consensus845 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 99.97
PLN03202900 protein argonaute; Provisional 99.95
KOG1041|consensus876 99.95
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 99.94
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 99.94
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.93
KOG1042|consensus845 99.89
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.45
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 98.35
PF13032138 DUF3893: Domain of unknown function (DUF3893) 94.93
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
Probab=100.00  E-value=2.2e-66  Score=530.29  Aligned_cols=307  Identities=43%  Similarity=0.697  Sum_probs=242.4

Q ss_pred             CCCeeEEEeeccC-----ChhHHHHHHHh-cCCCCCcccccccccc---------cchHHHHHHHHHHHhhhccCCCcEE
Q psy6533          36 VKPVHIIFYRDGV-----SEGQFQAVMRR-CGPCSNRSVAGLSYTI---------FTGAEISAIKRACQGVEANYNPKVT  100 (387)
Q Consensus        36 ~~P~~Ii~yRDGV-----segq~~~v~~~-~~~~~~~~~~~~~y~~---------~~~~E~~~ik~a~~~~~~~~~Pk~t  100 (387)
                      .||..-|.|+++-     ..|.+...-.. ..+...+.|+.+....         .....++.+.++|..+|..+.    
T Consensus        21 vL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F~~~l~~~~~~~g~~~~----   96 (426)
T cd04657          21 VLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNFVDQLVKTVIGAGINIT----   96 (426)
T ss_pred             EcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHHHHHHHHHHHhcCCccc----
Confidence            5677778888542     24544321100 1123346777775542         123466778888888877654    


Q ss_pred             EEEecccccc-cccCCCCCCCCCCCCCCCCCccccccccccCCC-cceeeeeec--eeeecceeeecccccccc-CCchh
Q psy6533         101 FLVVQKRHHT-RFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTD-LDFYLVSHQ--SIQVGILTQCIKEKTVFK-MNPAT  175 (387)
Q Consensus       101 ~Ivv~Krhht-Rff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~-~dfY~~~k~--~~~~GI~TQcv~~~tv~k-~n~~~  175 (387)
                      ..+....... .++..-        .+....+..+ .+++.|.. .+.|..+|+  +.+.||+|||+..+++.+ .++++
T Consensus        97 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l-v~~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~k~~~~~~  167 (426)
T cd04657          97 TAIASVEGRVEELFAKL--------KQAKGEGPQL-VLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQY  167 (426)
T ss_pred             ccccccchhHHHHHHHH--------HhhccCCCCE-EEEEEcCCCcchHHHHHHHHhhcCCcccEEEcccccccccchHH
Confidence            1111111111 222210        0111112222 24777855 489999999  788999999999999876 68999


Q ss_pred             HHHHHHHHHhhcCCcccccc------------------------------------------------------------
Q psy6533         176 TGNILLKINAKLNGINHYVN------------------------------------------------------------  195 (387)
Q Consensus       176 ~~ni~lKiN~KlGG~n~~l~------------------------------------------------------------  195 (387)
                      +.||++|||+||||+||.+.                                                            
T Consensus       168 ~~NI~lKin~KlGG~n~~v~~~~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas~d~~~~~y~~~~~~q~~~~e~  247 (426)
T cd04657         168 FANVALKINLKLGGINHSLEPDIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHLAQYPASVRLQSHRQEI  247 (426)
T ss_pred             HHHHHHHHHHhcCCEeeecccccccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEecCCcccccceEEEEeCCCcch
Confidence            99999999999999999763                                                            


Q ss_pred             -------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccC
Q psy6533         196 -------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPT  256 (387)
Q Consensus       196 -------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~  256 (387)
                                         |.+|++|||||||||||||..|++.|+++|++||.+++.+|.|+||||+|+||||+|||+.
T Consensus       248 i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~  327 (426)
T cd04657         248 IDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPT  327 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEecc
Confidence                               7899999999999999999999999999999999999988999999999999999999997


Q ss_pred             CCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCc
Q psy6533         257 SPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSV  336 (387)
Q Consensus       257 ~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~v  336 (387)
                       +..+.....+||+||||||++||+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+||+++|
T Consensus       328 -~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~v  406 (426)
T cd04657         328 -DEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSV  406 (426)
T ss_pred             -CcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCc
Confidence             3222222479999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchHHHHHHHHhhhhhhh
Q psy6533         337 SYPAPTYYAHLAAFRGRVYI  356 (387)
Q Consensus       337 slPaP~~yA~~~a~R~~~~~  356 (387)
                      |+|+|+||||++|+|||+|+
T Consensus       407 sip~p~~yA~~la~r~r~~~  426 (426)
T cd04657         407 SIPPPAYYAHLAAARARCYL  426 (426)
T ss_pred             ccchHHHHHHHHHHHHhhcC
Confidence            99999999999999999986

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
>PLN03202 protein argonaute; Provisional Back     alignment and domain information
>KOG1041|consensus Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>KOG1042|consensus Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>PLN03202 protein argonaute; Provisional Back     alignment and domain information
>KOG1041|consensus Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>KOG1042|consensus Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 1e-52
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 2e-52
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 4e-30
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 4e-27
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 1e-11
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure 
Iteration: 1

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
            + KP  IIFYRDGVSEGQFQ V+  E+ AI+ AC  +E +Y P +TF+VVQKRHHTR F
Sbjct: 657 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 716
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
            T  +E  G ++ N+  GT VDT ITHPT+ DFYL SH  IQGT+RP+ Y+ LWD+   +
Sbjct: 717 CTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFS 775
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLD 362
            DE + +TY LCH + RCTRSVS PAP YYAHL AFR R ++ ++  D
Sbjct: 776 SDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHD 823
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 3e-68
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 2e-32
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 2e-08
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 3e-66
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 3e-27
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 3e-07
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 6e-59
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-23
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 4e-08
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 5e-41
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 4e-12
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 2e-36
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-12
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 4e-35
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 1e-13
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 1e-33
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 3e-14
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 8e-32
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 1e-10
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 8e-11
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 1e-10
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 6e-10
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 3e-09
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-04
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  230 bits (586), Expect = 3e-68
 Identities = 103/208 (49%), Positives = 129/208 (62%), Gaps = 21/208 (10%)

Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
            + KP  IIFYRDGVSEGQFQ V+  E+ AI+ AC  +E +Y P +TF+VVQKRHHTR F
Sbjct: 659 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 718

Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
            T  +E  G ++ N+  GT VDT ITHPT+ DFYL SH  IQGT+RP+ Y+ LWD+   +
Sbjct: 719 CTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFS 777

Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNN--------- 365
            DE + +TY LCH + RCTRSVS PAP YYAHL AFR R ++ ++  D            
Sbjct: 778 SDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSN 837

Query: 366 ------LPRENQVHQANAEFLTNNPMYF 387
                 L +  QVHQ      T   MYF
Sbjct: 838 GRDHQALAKAVQVHQD-----TLRTMYF 860
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 100.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 100.0
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 100.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 99.97
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 99.96
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 99.95
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 99.69
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 99.67
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 99.53
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 99.41
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 99.4
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.28
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.25
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.22
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.15
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=1.5e-67  Score=576.27  Aligned_cols=314  Identities=38%  Similarity=0.632  Sum_probs=249.1

Q ss_pred             CCCeeEEEeecc------CChhHHHHHHHh-cCCCCCcccccccccc-------cchHHHHHHHHHHHhhhccCC--CcE
Q psy6533          36 VKPVHIIFYRDG------VSEGQFQAVMRR-CGPCSNRSVAGLSYTI-------FTGAEISAIKRACQGVEANYN--PKV   99 (387)
Q Consensus        36 ~~P~~Ii~yRDG------Vsegq~~~v~~~-~~~~~~~~~~~~~y~~-------~~~~E~~~ik~a~~~~~~~~~--Pk~   99 (387)
                      .||..-|.|.++      ...|+....-.. ..+...+.|+.+.+..       .....+..+.++|..+|....  |.+
T Consensus       414 vL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~  493 (861)
T 4f3t_A          414 VLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCF  493 (861)
T ss_dssp             ECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSE
T ss_pred             EecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeE
Confidence            467777889864      134554211000 0122346677664321       123567888999998887664  433


Q ss_pred             EEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec--eeeecceeeeccccccccCCchhHH
Q psy6533         100 TFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ--SIQVGILTQCIKEKTVFKMNPATTG  177 (387)
Q Consensus       100 t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~--~~~~GI~TQcv~~~tv~k~n~~~~~  177 (387)
                      .-+...-..-..+|..-         .+..++..+ .+|+.|...+.|..+|+  ++..||+|||+..+++.+.++|++.
T Consensus       494 ~~~~~~~~~~~~~~~~l---------~~~~~~~ql-vl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~  563 (861)
T 4f3t_A          494 CKYAQGADSVEPMFRHL---------KNTYAGLQL-VVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLS  563 (861)
T ss_dssp             EEECCSSSSHHHHHHHH---------HHHSTTCCE-EEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHH
T ss_pred             EEecCchHHHHHHHHHH---------HhhcCCCcE-EEEEeCCCccHHHHHHHHhcccCCcceEEEEecccccccHHHHH
Confidence            22111001111222100         000122222 25788877889999999  7899999999999999888999999


Q ss_pred             HHHHHHHhhcCCcccccc--------------------------------------------------------------
Q psy6533         178 NILLKINAKLNGINHYVN--------------------------------------------------------------  195 (387)
Q Consensus       178 ni~lKiN~KlGG~n~~l~--------------------------------------------------------------  195 (387)
                      ||++|||+||||+||.+.                                                              
T Consensus       564 ni~lKiN~KlGG~n~~l~~~~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~E~i~~  643 (861)
T 4f3t_A          564 NLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQD  643 (861)
T ss_dssp             HHHHHHHHHTTCBCCEECSTTSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTCCSCTT
T ss_pred             HHHHHHHHhcCCcceeccccccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCccHHHH
Confidence            999999999999999742                                                              


Q ss_pred             ----------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCC
Q psy6533         196 ----------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPS  259 (387)
Q Consensus       196 ----------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~  259 (387)
                                      |.+|++|||||||||||||.+|+++|+++|++||.+++.+|.|+||||||+||||+|||+. +.
T Consensus       644 l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~-~~  722 (861)
T 4f3t_A          644 LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCT-DK  722 (861)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEES-SG
T ss_pred             HHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeec-CC
Confidence                            8999999999999999999999999999999999999999999999999999999999997 33


Q ss_pred             CCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCc
Q psy6533         260 EGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYP  339 (387)
Q Consensus       260 ~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslP  339 (387)
                      .+..++.+||+||||||++||+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+||+++||||
T Consensus       723 ~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvp  802 (861)
T 4f3t_A          723 NERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIP  802 (861)
T ss_dssp             GGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSC
T ss_pred             cccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhhccCCCCCCc
Confidence            23346789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhhhhhhcccC
Q psy6533         340 APTYYAHLAAFRGRVYIKNRH  360 (387)
Q Consensus       340 aP~~yA~~~a~R~~~~~~~~~  360 (387)
                      ||+||||++|+|||+||....
T Consensus       803 aP~yYA~~~a~R~r~~l~~~~  823 (861)
T 4f3t_A          803 APAYYAHLVAFRARYHLVDKE  823 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC-
T ss_pred             hHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999997643
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 4e-49
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 2e-15
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 4e-38
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-14
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 1e-36
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 3e-15
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  168 bits (427), Expect = 4e-49
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 27/172 (15%)

Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
              K   I+ +RDG            E++A K+  +     Y   +  L + KR++ RFF
Sbjct: 245 GFKKGSKIVVHRDGRLYRD-------EVAAFKKYGE----LYGYSLELLEIIKRNNPRFF 293

Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
                      N     G           D       +Q  +GT +P K  +++ E  + 
Sbjct: 294 S----------NEKFIKGYFY----KLSEDSVILATYNQVYEGTHQPIKVRKVYGELPV- 338

Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLDMNNL 366
            +        L  +     + +  PA  +Y+          I+    + + +
Sbjct: 339 -EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIM 389
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.62
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.35
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.31
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=9.7e-46  Score=370.48  Aligned_cols=243  Identities=16%  Similarity=0.158  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHhhhccCCC-cEEEEEecccccc--cccCCCCCCCCCCCCCCCCCccccccccccCC--------Cccee
Q psy6533          79 AEISAIKRACQGVEANYNP-KVTFLVVQKRHHT--RFFPTSPSEGDGSRNNNVRPGTIVDTTITHPT--------DLDFY  147 (387)
Q Consensus        79 ~E~~~ik~a~~~~~~~~~P-k~t~Ivv~Krhht--Rff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~--------~~dfY  147 (387)
                      .++..+.+.|...|....+ ...++...-|...  .+...-.      .  .-.+..+   +|+.|.        ..++|
T Consensus        57 ~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~l~---~vi~~~~~~~~~~~~~~~Y  125 (392)
T d1yvua2          57 EFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVIN------K--IKDVDLV---IVFLEEYPKVDPYKSFLLY  125 (392)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHT------T--TSSCSEE---EEEEC----------CHHH
T ss_pred             HHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHh------h--ccCCCEE---EEEEcCCCCcccccchhHH
Confidence            4677888889888876543 2233333333322  2211000      0  0111222   344442        24689


Q ss_pred             eeeec-eeeecceeeeccccccccCCch-hHHHHHHHHHhhcCCcccccc------------------------------
Q psy6533         148 LVSHQ-SIQVGILTQCIKEKTVFKMNPA-TTGNILLKINAKLNGINHYVN------------------------------  195 (387)
Q Consensus       148 ~~~k~-~~~~GI~TQcv~~~tv~k~n~~-~~~ni~lKiN~KlGG~n~~l~------------------------------  195 (387)
                      ..+|+ .+..||+|||+..+++.+.+.+ ++.||++|||+||||+||.+.                              
T Consensus       126 ~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~~~~~tmiIGiDv~h~~~~~~~~~~v~~~  205 (392)
T d1yvua2         126 DFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFT  205 (392)
T ss_dssp             HHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEE
T ss_pred             HHHHHHHhcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCCCCCCeEEEEEEEEecCCCCCcccEEEEE
Confidence            99999 7889999999999998877655 578999999999999999874                              


Q ss_pred             ----------------------------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccC
Q psy6533         196 ----------------------------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEAN  235 (387)
Q Consensus       196 ----------------------------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~  235 (387)
                                                              |.+|++|||||||+..       ++|+++|++||+++   
T Consensus       206 ~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~---  275 (392)
T d1yvua2         206 KIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY---  275 (392)
T ss_dssp             EEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH---
T ss_pred             EEEcCCCCEEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCc-------HHHHHHHHHHHHhc---
Confidence                                                    8899999999999855       46999999999876   


Q ss_pred             CCCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCH
Q psy6533         236 YNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD  315 (387)
Q Consensus       236 ~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~  315 (387)
                       .|++++|+|+||||+|||+.          .|+++||+++    .+...+||++||.+.|||++|+||+|++|++  +.
T Consensus       276 -~pki~~IvV~Krh~~Rff~~----------~~~~~Gt~v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~  338 (392)
T d1yvua2         276 -GYSLELLEIIKRNNPRFFSN----------EKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PV  338 (392)
T ss_dssp             -TCEEEEEEEECSSCCCEECS----------CSCCTTEEEE----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CH
T ss_pred             -CCcEEEEEEEecCCeeecCC----------CCCCCCCEEe----CCCCeEEEEEcCCcCCCCCCCcEEEEECCCC--CH
Confidence             48999999999999999986          3567899873    5678899999999999999999999999986  56


Q ss_pred             HHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhccc
Q psy6533         316 DETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNR  359 (387)
Q Consensus       316 d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~  359 (387)
                      |+||++||.|||+|+||++++|+|+|+||||++|+|+|.++++.
T Consensus       339 d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~  382 (392)
T d1yvua2         339 EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI  382 (392)
T ss_dssp             HHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHHhhccCcCCCCeeCHHHHHHHHHHHHHhhcCCcc
Confidence            99999999999999999999999999999999999999988653
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure