Psyllid ID: psy6538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE
Flexible Loop (DISEMBL)
mqariyeleeeveverqsrakaeKQRADLARELEELGerleeaggatsaqielnKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVqsrldeanrtindldvarkkliiette
Low Complexity Region (SEG)
MQARIYeleeeveveRQSRAKAEKQradlareleelgerleeaggaTSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************
Disordered Region (DISOPRED)
MQARIYELEE****************************************************************************************************************************************L******
Disordered Region (DISEMBL)
MQARIYELE******************DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE
Disordered Region (DISPRO)
M***IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTSAQIELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
P05661	1962	Myosin heavy chain, muscl	yes	N/A	1.0	0.077	0.698	2e-47
P24733	1938	Myosin heavy chain, stria	N/A	N/A	1.0	0.078	0.517	7e-37
Q9BE40	1938	Myosin-1 OS=Bos taurus GN	yes	N/A	0.888	0.070	0.528	9e-36
Q9UKX2	1941	Myosin-2 OS=Homo sapiens	yes	N/A	0.888	0.070	0.528	1e-35
Q9BE41	1940	Myosin-2 OS=Bos taurus GN	no	N/A	0.888	0.070	0.528	1e-35
P13535	1937	Myosin-8 OS=Homo sapiens	no	N/A	1.0	0.078	0.522	1e-35
P12882	1939	Myosin-1 OS=Homo sapiens	no	N/A	0.888	0.070	0.522	2e-35
Q9TV63	1939	Myosin-2 OS=Sus scrofa GN	yes	N/A	0.888	0.070	0.528	2e-35
Q9TV62	1937	Myosin-4 OS=Sus scrofa GN	no	N/A	1.0	0.078	0.528	2e-35
Q9TV61	1939	Myosin-1 OS=Sus scrofa GN	yes	N/A	0.888	0.070	0.522	2e-35

>sp|P05661|MYSA_DROME Myosin heavy chain, muscle OS=Drosophila melanogaster GN=Mhc PE=1 SV=4

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 139/176 (78%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1110 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1169

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            +SKLRRDLEEANIQHESTLANLRKKHNDAV+EM EQ+DQLNKLK                
Sbjct: 1170 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQ 1229

Query: 106  --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                     +++A  EK+ KQL+H LNEVQS+LDE NRT+ND D ++KKL IE ++
Sbjct: 1230 TRTACDQLGRDKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSD 1285

Muscle contraction.
Drosophila melanogaster (taxid: 7227)

>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1

 Score =  152 bits (385), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/176 (51%), Positives = 126/176 (71%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEE+E ER +RAK EKQRA+L RELEELGERL+EAGGATSAQIELNKKREAE
Sbjct: 1108 LQARIEELEEELEAERNARAKVEKQRAELNRELEELGERLDEAGGATSAQIELNKKREAE 1167

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTN-------------- 106
            + K+RRDLEEA++QHE+ ++ LRKKH DA +EM +Q+DQL K+K+               
Sbjct: 1168 LLKIRRDLEEASLQHEAQISALRKKHQDAANEMADQVDQLQKVKSKLEKDKKDLKREMDD 1227

Query: 107  ---------KEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                     K +  +EKV+KQ + Q++++ +RL+++ R+IN+L   + +L  E ++
Sbjct: 1228 LESQMTHNMKNKGCSEKVMKQFESQMSDLNARLEDSQRSINELQSQKSRLQAENSD 1283

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.

Aequipecten irradians (taxid: 31199)

>sp|Q9BE40|MYH1_BOVIN Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2

 Score =  149 bits (375), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 23/159 (14%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1131 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1190

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLK-----------------------TNKEEATTEK 114
            T A LRKKH D+V+E+GEQID L ++K                        +K +   EK
Sbjct: 1191 TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEK 1250

Query: 115  VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            + + L+ QL+E++++ DE  R INDL   R +L  E+ E
Sbjct: 1251 MCRALEDQLSELKTKEDEQQRLINDLTTQRARLQTESGE 1289

Muscle contraction.

Bos taurus (taxid: 9913)

>sp|Q9UKX2|MYH2_HUMAN Myosin-2 OS=Homo sapiens GN=MYH2 PE=1 SV=1

 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 23/159 (14%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1134 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1193

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLK-----------------------TNKEEATTEK 114
            T A LRKKH D+V+E+GEQID L ++K                        +K +   EK
Sbjct: 1194 TAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNVETVSKAKGNLEK 1253

Query: 115  VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            + + L+ QL+E++S+ +E  R INDL   R +L  E+ E
Sbjct: 1254 MCRTLEDQLSELKSKEEEQQRLINDLTAQRGRLQTESGE 1292

Muscle contraction. Required for cytoskeleton organization.

Homo sapiens (taxid: 9606)

>sp|Q9BE41|MYH2_BOVIN Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 23/159 (14%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1133 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1192

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLK-----------------------TNKEEATTEK 114
            T A LRKKH D+V+E+GEQID L ++K                        +K +   EK
Sbjct: 1193 TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNVETISKAKGNLEK 1252

Query: 115  VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            + + L+ Q+NE++S+ +E  R INDL   R +L  E+ E
Sbjct: 1253 MCRTLEDQVNELKSKEEEQQRLINDLTTQRGRLQTESGE 1291

Muscle contraction. Required for cytoskeleton organization.

Bos taurus (taxid: 9913)

>sp|P13535|MYH8_HUMAN Myosin-8 OS=Homo sapiens GN=MYH8 PE=1 SV=3

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 120/176 (68%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI EL EE+E ER SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQ+ELNKKREAE
Sbjct: 1114 LQARIEELGEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQVELNKKREAE 1173

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
              KLRRDLEEA +QHE+ +A LRKKH D+++E+GEQID L ++K                
Sbjct: 1174 FQKLRRDLEEATLQHEAMVAALRKKHADSMAELGEQIDNLQRVKQKLEKEKSELKMETDD 1233

Query: 105  -------TNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                    +K +   EK+ + L+ Q++E++++ +E  R INDL   R +L  E  E
Sbjct: 1234 LSSNAEAISKAKGNLEKMCRSLEDQVSELKTKEEEQQRLINDLTAQRARLQTEAGE 1289

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|P12882|MYH1_HUMAN Myosin-1 OS=Homo sapiens GN=MYH1 PE=1 SV=3

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 108/159 (67%), Gaps = 23/159 (14%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1132 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1191

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLK-----------------------TNKEEATTEK 114
            T A LRKKH D+V+E+GEQID L ++K                        +K +   EK
Sbjct: 1192 TAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEK 1251

Query: 115  VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            + + L+ QL+E++++ +E  R INDL   R +L  E+ E
Sbjct: 1252 MCRALEDQLSEIKTKEEEQQRLINDLTAQRARLQTESGE 1290

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|Q9TV63|MYH2_PIG Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 23/159 (14%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1132 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1191

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLK-----------------------TNKEEATTEK 114
            T A LRKKH D+V+E+GEQID L ++K                        +K +   EK
Sbjct: 1192 TAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEK 1251

Query: 115  VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            + + L+ QL+E++S+ +E  R INDL   R +L  E+ E
Sbjct: 1252 MCRTLEDQLSELKSKEEEQQRLINDLTAQRGRLQTESGE 1290

Muscle contraction. Required for cytoskeleton organization.

Sus scrofa (taxid: 9823)

>sp|Q9TV62|MYH4_PIG Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 121/176 (68%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QAR  ELEEE+E ER SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE
Sbjct: 1113 LQARTEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1172

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
              K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K                
Sbjct: 1173 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDD 1232

Query: 105  -------TNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                    +K +   EK+ + L+ QL+EV+++ +E  R IN+L   + +L  E+ E
Sbjct: 1233 LASNMETVSKAKGNLEKMCRTLEDQLSEVKTKEEEHQRLINELSAQKARLQTESGE 1288

Muscle contraction.

Sus scrofa (taxid: 9823)

>sp|Q9TV61|MYH1_PIG Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 108/159 (67%), Gaps = 23/159 (14%)

Query: 18   SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
            SRAKAEKQR+DL+RELEE+ ERLEEAGGATSAQIE+NKKREAE  K+RRDLEEA +QHE+
Sbjct: 1132 SRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEA 1191

Query: 78   TLANLRKKHNDAVSEMGEQIDQLNKLK-----------------------TNKEEATTEK 114
            T A LRKKH D+V+E+GEQID L ++K                        +K +   EK
Sbjct: 1192 TAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEK 1251

Query: 115  VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            + + L+ QL+E++++ +E  R INDL   R +L  E+ E
Sbjct: 1252 MCRTLEDQLSELKTKEEEQQRLINDLTAQRARLQTESGE 1290

Muscle contraction.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
229472621	836	myosin heavy chain [Bombyx mandarina]	1.0	0.183	0.710	9e-54
170029180	1946	myosin-2 heavy chain [Culex quinquefasci	1.0	0.078	0.602	3e-50
328702403	1969	PREDICTED: myosin heavy chain, muscle is	1.0	0.077	0.715	7e-48
197322818	836	myosin heavy chain [Bombyx mori]	1.0	0.183	0.721	3e-47
183979376	1965	muscle myosin heavy chain [Papilio xuthu	1.0	0.077	0.721	7e-47
234204034	918	myosin heavy chain variant C [Bombyx man	1.0	0.166	0.715	1e-46
189239927	1960	PREDICTED: similar to Myosin heavy chain	1.0	0.078	0.710	3e-46
189239937	1960	PREDICTED: similar to Myosin heavy chain	1.0	0.078	0.710	3e-46
386769712	1962	myosin heavy chain, isoform S [Drosophil	1.0	0.077	0.698	1e-45
194759999	2165	GF15360 [Drosophila ananassae] gi|190615	1.0	0.070	0.698	1e-45

>gi|229472621|gb|ACQ72825.1| myosin heavy chain [Bombyx mandarina]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 140/176 (79%), Gaps = 23/176 (13%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +Q RI ELEEEVE ERQ+RAKAEKQRADLARE EELGERLEEAGGATSAQIELNKKREAE
Sbjct: 86  LQGRIEELEEEVESERQARAKAEKQRADLAREPEELGERLEEAGGATSAQIELNKKREAE 145

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
           +SKLRRDLEEANIQHE+TLANLRKKHNDAVSEMGEQ+DQLNKLK                
Sbjct: 146 LSKLRRDLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVND 205

Query: 106 --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                   + E+A  EK++KQ +HQLNEVQS+ DEANRT+NDLD A+KKL IE ++
Sbjct: 206 LRAGLDHLSNEKAAQEKIVKQPQHQLNEVQSKADEANRTLNDLDAAKKKLSIENSD 261

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029180|ref|XP_001842471.1| myosin-2 heavy chain [Culex quinquefasciatus] gi|167881574|gb|EDS44957.1| myosin-2 heavy chain [Culex quinquefasciatus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 131/176 (74%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q RI EL++EVE ERQ+RAKAEKQRADLARELE+ GERLEEAGGATSAQI+LN+KR+ E
Sbjct: 1118 LQGRIDELQDEVESERQARAKAEKQRADLARELEDFGERLEEAGGATSAQIDLNRKRDVE 1177

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE------------ 108
            ++KLRRDLEEANIQHESTLA+LRKKHNDAV+EM EQ++QLNKLK   E            
Sbjct: 1178 LTKLRRDLEEANIQHESTLASLRKKHNDAVAEMAEQVEQLNKLKMKAEHDRANMYNELNK 1237

Query: 109  -----------EATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                       +A  EK+ KQL+H LN +  + DE NRT+ND D ++KKL +E ++
Sbjct: 1238 TRSSCDQLARDKAGQEKIAKQLQHSLNHIHGKHDETNRTLNDFDASKKKLSVENSD 1293

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702403|ref|XP_001952092.2| PREDICTED: myosin heavy chain, muscle isoform 1 [Acyrthosiphon pisum]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 142/176 (80%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q+RI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1117 LQSRIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1176

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            MSKLRRDLEEANIQHE+TLANLRKKHNDAV+EMG+QIDQLNKLKT               
Sbjct: 1177 MSKLRRDLEEANIQHEATLANLRKKHNDAVAEMGDQIDQLNKLKTKAEKDKCQFLCELND 1236

Query: 106  --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                    + E+A TEK+ KQ++HQLNEVQ +LDE NRT+ND D A+KKL IE ++
Sbjct: 1237 TRASLDHISNEKAQTEKIYKQVQHQLNEVQGKLDETNRTLNDFDAAKKKLSIENSD 1292

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197322818|gb|ACH69160.1| myosin heavy chain [Bombyx mori]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 142/176 (80%), Gaps = 23/176 (13%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +Q RI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 86  LQGRIEELEEEVESERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 145

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
           +SKLRRDLEEANIQHE+TLANLRKKHNDAVSEMGEQ+DQLNKLK                
Sbjct: 146 LSKLRRDLEEANIQHEATLANLRKKHNDAVSEMGEQLDQLNKLKAKAEKERAQYFSEVND 205

Query: 106 --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                   + E+A  EK++KQL+HQLNEVQS+ DEANRT+NDLD A+KKL IE ++
Sbjct: 206 LRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKADEANRTLNDLDAAKKKLSIENSD 261

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979376|dbj|BAG30740.1| muscle myosin heavy chain [Papilio xuthus]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 142/176 (80%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1114 LQARIEELEEEVESERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1173

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            +SKLRRDLEEANIQHESTLANLRKKHNDAV+EMGEQ+DQLNKLK                
Sbjct: 1174 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMGEQLDQLNKLKAKAEKERSQYFSEVND 1233

Query: 106  --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                    + E+A  EKV+KQL+H LNEVQ++ DEANRT+NDLD A+KKL IE ++
Sbjct: 1234 LRAGLDHLSNEKAAQEKVVKQLQHNLNEVQNKADEANRTLNDLDAAKKKLSIENSD 1289

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|234204034|gb|ACQ91271.1| myosin heavy chain variant C [Bombyx mandarina]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 141/176 (80%), Gaps = 23/176 (13%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +Q RI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 86  LQGRIEELEEEVESERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 145

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
           +SKLRRDLEEANIQHE+TLANLRKKHNDAVS MGEQ+DQLNKLK                
Sbjct: 146 LSKLRRDLEEANIQHEATLANLRKKHNDAVSGMGEQLDQLNKLKAKAEKERAQYFSEVND 205

Query: 106 --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                   + E+A  EK++KQL+HQLNEVQS+ DEANRT+NDLD A+KKL IE ++
Sbjct: 206 LRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKADEANRTLNDLDAAKKKLSIENSD 261

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239927|ref|XP_001814139.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 7 [Tribolium castaneum]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 139/176 (78%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1111 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1170

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK                
Sbjct: 1171 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAERDRASIYTELQQ 1230

Query: 105  -------TNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                     +E+A  EKV KQL+ QLN+VQ +LDE NRT+ND D A+KKL IE ++
Sbjct: 1231 TRSAVEQVGREKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSD 1286

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239937|ref|XP_001814083.1| PREDICTED: similar to Myosin heavy chain CG17927-PF isoform 6 [Tribolium castaneum]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 139/176 (78%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1111 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1170

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK---------------- 104
            ++KLRRDLEE+NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK                
Sbjct: 1171 LAKLRRDLEESNIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKAKAERDRASIYTELQQ 1230

Query: 105  -------TNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                     +E+A  EKV KQL+ QLN+VQ +LDE NRT+ND D A+KKL IE ++
Sbjct: 1231 TRSAVEQVGREKAAVEKVSKQLQQQLNDVQGKLDETNRTLNDFDAAKKKLSIENSD 1286

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769712|ref|NP_001246049.1| myosin heavy chain, isoform S [Drosophila melanogaster] gi|383291522|gb|AFH03723.1| myosin heavy chain, isoform S [Drosophila melanogaster]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 139/176 (78%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1110 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1169

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            +SKLRRDLEEANIQHESTLANLRKKHNDAV+EM EQ+DQLNKLK                
Sbjct: 1170 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQ 1229

Query: 106  --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                     +++A  EK+ KQL+H LNEVQS+LDE NRT+ND D ++KKL IE ++
Sbjct: 1230 TRTACDQLGRDKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSD 1285

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759999|ref|XP_001962229.1| GF15360 [Drosophila ananassae] gi|190615926|gb|EDV31450.1| GF15360 [Drosophila ananassae]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 139/176 (78%), Gaps = 23/176 (13%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +QARI ELEEEVE ERQ+RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
Sbjct: 1313 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1372

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT--------------- 105
            +SKLRRDLEEANIQHESTLANLRKKHNDAV+EM EQ+DQLNKLK                
Sbjct: 1373 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHDRQTCHNELNQ 1432

Query: 106  --------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                     +++A  EK+ KQL+H LNEVQS+LDE NRT+ND D ++KKL IE ++
Sbjct: 1433 TRTACDQLGRDKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSD 1488

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
FB|FBgn0264695	1962	Mhc "Myosin heavy chain" [Dros	0.843	0.065	0.544	4.2e-27
UNIPROTKB|Q076A5	1939	MYH4 "Myosin-4" [Canis lupus f	0.967	0.076	0.411	6.7e-22
UNIPROTKB|F1SS62	1470	MYH1 "Myosin-1" [Sus scrofa (t	0.888	0.092	0.425	9.8e-22
UNIPROTKB|Q076A6	1939	MYH1 "Myosin-1" [Canis lupus f	0.967	0.076	0.405	1.1e-21
UNIPROTKB|F1PMJ2	1859	MYH2 "Myosin-2" [Canis lupus f	0.967	0.079	0.405	1.3e-21
UNIPROTKB|F1LSI0	1926	Myh4 "Myosin-4" [Rattus norveg	0.888	0.070	0.432	1.4e-21
UNIPROTKB|F1PQU7	1938	MYH13 "Myosin-13" [Canis lupus	0.888	0.070	0.425	1.4e-21
UNIPROTKB|P12882	1939	MYH1 "Myosin-1" [Homo sapiens	0.888	0.070	0.425	1.4e-21
UNIPROTKB|Q9TV61	1939	MYH1 "Myosin-1" [Sus scrofa (t	0.888	0.070	0.425	1.4e-21
MGI|MGI:1339713	1939	Myh4 "myosin, heavy polypeptid	0.888	0.070	0.432	1.4e-21

FB|FBgn0264695 Mhc "Myosin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 4.2e-27, P = 4.2e-27
 Identities = 74/136 (54%), Positives = 85/136 (62%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          RQ+RAKAEKQ                     TSAQIELNKKREAE
Sbjct:  1110 LQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 1169

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
             +SKLRRDLEEANIQHESTLANLRKKHNDAV+EM EQ+DQLNKLK   E        +Q  
Sbjct:  1170 LSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEHD------RQTC 1223

Query:   121 H-QLNEVQSRLDEANR 135
             H +LN+ ++  D+  R
Sbjct:  1224 HNELNQTRTACDQLGR 1239

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0005863 "striated muscle myosin thick filament" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005859 "muscle myosin complex" evidence=ISS;IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0016459 "myosin complex" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0042692 "muscle cell differentiation" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0060361 "flight" evidence=IMP

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0031672 "A band" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0031033 "myosin filament organization" evidence=IMP

UNIPROTKB|Q076A5 MYH4 "Myosin-4" [Canis lupus familiaris (taxid:9615)]

 Score = 271 (100.5 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 63/153 (41%), Positives = 89/153 (58%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   +LK
Sbjct:  1175 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SELK 1229

Query:   121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
              +++++ S ++  ++   +L+   + L  + +E
Sbjct:  1230 MEIDDLASNMETVSKAKGNLEKTCRTLEDQLSE 1262

GO:0030016 "myofibril" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1SS62 MYH1 "Myosin-1" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 9.8e-22, P = 9.8e-22
 Identities = 60/141 (42%), Positives = 84/141 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:   646 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 705

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   ++K
Sbjct:   706 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SEMK 760

Query:   121 HQLNEVQSRLDEANRTINDLD 141
              +++++ S ++  ++   +L+
Sbjct:   761 MEIDDLASNMETVSKAKGNLE 781

GO:0031672 "A band" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A6 MYH1 "Myosin-1" [Canis lupus familiaris (taxid:9615)]

 Score = 269 (99.8 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 62/153 (40%), Positives = 89/153 (58%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   ++K
Sbjct:  1175 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SEMK 1229

Query:   121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
              +++++ S ++  ++   +L+   + L  + +E
Sbjct:  1230 MEIDDLASNMETVSKAKGNLEKMCRTLEDQVSE 1262

GO:0031672 "A band" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1PMJ2 MYH2 "Myosin-2" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 62/153 (40%), Positives = 89/153 (58%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1117 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1176

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   ++K
Sbjct:  1177 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SEMK 1231

Query:   121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
              +++++ S ++  ++   +L+   + L  + +E
Sbjct:  1232 MEIDDLASNVETVSKAKGNLEKMCRTLEDQVSE 1264

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1LSI0 Myh4 "Myosin-4" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 61/141 (43%), Positives = 84/141 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   +LK
Sbjct:  1175 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SELK 1229

Query:   121 HQLNEVQSRLDEANRTINDLD 141
              +++++ S ++  ++   +L+
Sbjct:  1230 MEIDDLASNMETVSKAKGNLE 1250

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1PQU7 MYH13 "Myosin-13" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 60/141 (42%), Positives = 86/141 (60%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQ+E+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEASGVTSAQVEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               KLRRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   +LK
Sbjct:  1175 FQKLRRDLEEATLQHEATTAALRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SELK 1229

Query:   121 HQLNEVQSRLDEANRTINDLD 141
              +++++ S ++  +++ ++++
Sbjct:  1230 MEIDDLASNIETVSKSKSNVE 1250

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|P12882 MYH1 "Myosin-1" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 60/141 (42%), Positives = 84/141 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   ++K
Sbjct:  1175 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SEMK 1229

Query:   121 HQLNEVQSRLDEANRTINDLD 141
              +++++ S ++  ++   +L+
Sbjct:  1230 MEIDDLASNMETVSKAKGNLE 1250

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0031672 "A band" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|Q9TV61 MYH1 "Myosin-1" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 60/141 (42%), Positives = 84/141 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   ++K
Sbjct:  1175 FQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SEMK 1229

Query:   121 HQLNEVQSRLDEANRTINDLD 141
              +++++ S ++  ++   +L+
Sbjct:  1230 MEIDDLASNMETVSKAKGNLE 1250

GO:0030016 "myofibril" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

MGI|MGI:1339713 Myh4 "myosin, heavy polypeptide 4, skeletal muscle" [Mus musculus (taxid:10090)]

 Score = 268 (99.4 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 61/141 (43%), Positives = 84/141 (59%)

Query:     1 MQARIYXXXXXXXXXRQSRAKAEKQXXXXXXXXXXXXXXXXXXXXXTSAQIELNKKREAE 60
             +QARI          R SRAKAEKQ                     TSAQIE+NKKREAE
Sbjct:  1115 LQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAE 1174

Query:    61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
               K+RRDLEEA +QHE+T A LRKKH D+V+E+GEQID L ++K   E+   EK   +LK
Sbjct:  1175 FQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEK---EK--SELK 1229

Query:   121 HQLNEVQSRLDEANRTINDLD 141
              +++++ S ++  ++   +L+
Sbjct:  1230 MEIDDLASNMETVSKAKGNLE 1250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006936 "muscle contraction" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0014823 "response to activity" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

GO:0030016 "myofibril" evidence=ISO

GO:0032982 "myosin filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UKX2	MYH2_HUMAN	No assigned EC number	0.5283	0.8888	0.0700	yes	N/A
Q076A6	MYH1_CANFA	No assigned EC number	0.5157	0.8888	0.0701	yes	N/A
Q076A7	MYH2_CANFA	No assigned EC number	0.5220	0.8888	0.0701	yes	N/A
Q9TV61	MYH1_PIG	No assigned EC number	0.5220	0.8888	0.0701	yes	N/A
Q9TV63	MYH2_PIG	No assigned EC number	0.5283	0.8888	0.0701	yes	N/A
P05661	MYSA_DROME	No assigned EC number	0.6988	1.0	0.0779	yes	N/A
Q9BE40	MYH1_BOVIN	No assigned EC number	0.5283	0.8888	0.0701	yes	N/A
P13538	MYSS_CHICK	No assigned EC number	0.5157	0.8888	0.0701	yes	N/A
P02566	MYO4_CAEEL	No assigned EC number	0.5147	0.9542	0.0742	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	153
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	6e-33
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.002

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score =  122 bits (307), Expect = 6e-33
 Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 23/175 (13%)

Query: 2   QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
           +ARI ELEEE+E ER +RAKAEK RADL+RELEEL ERLEEAGGAT+AQIELNKKREAE+
Sbjct: 45  EARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAEL 104

Query: 62  SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT---------------- 105
           +KLR+DLEEAN+QHE  LA LRKKH DA++E+ EQI+QL K K                 
Sbjct: 105 AKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDL 164

Query: 106 -------NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
                   K +   EK  KQL+ QL+E+Q +LDE  R +NDL   + +L  E ++
Sbjct: 165 LAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSD 219

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 13/106 (12%)

Query: 49  AQIELNKKR---EAEMSKLRRDLEEA-----NIQ-HESTLANLRKKHNDAVSEMGEQIDQ 99
           AQ++   K+   EAE   +++DLE+       I   +     L+++   A +++ +   +
Sbjct: 43  AQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAE 102

Query: 100 LNKLKTNKEEATTEKV----LKQLKHQLNEVQSRLDEANRTINDLD 141
           L  LK + +E T E +    L+QL+ +L +   +L  A   + + +
Sbjct: 103 LEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN 148

Length = 1113

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +  +I  L +++        + E++ A L++EL EL   +EE         E   + EAE
Sbjct: 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE-ATTEKVLKQL 119
           + +L   +E+   + ++    L +   +      E  +   +L++ +   A TE+ L+ L
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843

Query: 120 KHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
           + Q+ E+   ++     I +L+   ++L  E   
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEA 877

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
           +  +I ELEE  E         EK ++ L  ELE+L   LE A  A S   +  K  +  
Sbjct: 326 LNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDKI 385

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
           +++ +R ++E   + ++     R    +      E  +  ++++  + E       K L+
Sbjct: 386 LAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALRREN------KNLQ 439

Query: 121 HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            +++++  +L E  R +++L+ AR++L  E  E
Sbjct: 440 DEIHDLTDQLGEGGRNVHELEKARRRLEAEKDE 472

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.96
KOG0161|consensus	1930		99.9
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.75
KOG0161|consensus	1930		97.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.05
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.04
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	94.3
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.18
PF15372	129	DUF4600: Domain of unknown function (DUF4600)	93.36
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	93.3
KOG0971|consensus	1243		93.1
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	92.87
PRK11637	428	AmiB activator; Provisional	91.75
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	90.5
PRK04863	1486	mukB cell division protein MukB; Provisional	90.44
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.0
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.97
PRK04778	569	septation ring formation regulator EzrA; Provision	89.5
KOG1029|consensus	1118		89.18
COG4942	420	Membrane-bound metallopeptidase [Cell division and	88.77
KOG0977|consensus	546		88.52
KOG0612|consensus	1317		86.63
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	86.42
PRK09039	343	hypothetical protein; Validated	85.09
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	83.25
PRK11637	428	AmiB activator; Provisional	83.16
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.59
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	82.49
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	82.37
KOG0612|consensus	1317		81.22

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.96  E-value=5.4e-31  Score=243.91  Aligned_cols=153  Identities=66%  Similarity=0.861  Sum_probs=0.0

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538           1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (153)
Q Consensus         1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~   80 (153)
                      |+++|.+|+++|++||.+|.|++|+|+||++||++|+++|++++|+|++|++++++||+||.+||++|++.+.+|+.+++
T Consensus        44 lq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~  123 (859)
T PF01576_consen   44 LQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLA  123 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538          81 NLRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTI  137 (153)
Q Consensus        81 ~lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~  137 (153)
                      .||+||+++|++|+++|++++|+|++++                       |+++++.++.+|.+|.+++.++++.++.+
T Consensus       124 ~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~  203 (859)
T PF01576_consen  124 ELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQR  203 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999                       99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q psy6538         138 NDLDVARKKLIIETTE  153 (153)
Q Consensus       138 ~el~~~~~rl~~E~~e  153 (153)
                      ++++..+.+|++|+++
T Consensus       204 ~el~~~k~kL~~E~~e  219 (859)
T PF01576_consen  204 NELTEQKAKLQSENSE  219 (859)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999864

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0161|consensus

Probab=99.90  E-value=1.1e-22  Score=197.79  Aligned_cols=152  Identities=57%  Similarity=0.766  Sum_probs=149.0

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538           1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (153)
Q Consensus         1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~   80 (153)
                      |+++|.+|.++|+.||..|+|++|+++||..+|++|+.+|++++|+|.+|++++++|+.+|.+|++.|++.+..|+.+++
T Consensus      1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538          81 NLRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTI  137 (153)
Q Consensus        81 ~lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~  137 (153)
                      .||++|++++.++.+|++++++.|++++                       +.+.++.|+.+|.++++++.+++++++.+
T Consensus      1182 ~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~ 1261 (1930)
T KOG0161|consen 1182 ELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLR 1261 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998                       88999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q psy6538         138 NDLDVARKKLIIETT  152 (153)
Q Consensus       138 ~el~~~~~rl~~E~~  152 (153)
                      +++..++.++++|++
T Consensus      1262 ~~l~~q~~~l~~E~~ 1276 (1930)
T KOG0161|consen 1262 NDLTAKRSRLQNENE 1276 (1930)
T ss_pred             HHHHHHHHHhhhhHH
Confidence            999999999999986

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.75  E-value=6e-06  Score=77.68  Aligned_cols=150  Identities=27%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538           1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (153)
Q Consensus         1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~   80 (153)
                      |.+++.++...|+.|-..+..+....+.+..+++.|.+.|++-.++.....--..+-.+++..|++-++.....+-..+.
T Consensus       241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE  320 (859)
T PF01576_consen  241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE  320 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence            45788999999999999999999999999999999999999776555554455567889999999999999988888899


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy6538          81 NLRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTI  137 (153)
Q Consensus        81 ~lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~  137 (153)
                      ..|++-...+.++.++++.+.....+|+                       ...++|+.++|+.++.+++.++++....+
T Consensus       321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~  400 (859)
T PF01576_consen  321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAER  400 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888887776666666                       55778889999999999999988777666


Q ss_pred             HHHHHHHHHHHhh
Q psy6538         138 NDLDVARKKLIIE  150 (153)
Q Consensus       138 ~el~~~~~rl~~E  150 (153)
                      ..+......+.++
T Consensus       401 d~~q~e~r~~~te  413 (859)
T PF01576_consen  401 DAAQREARELETE  413 (859)
T ss_dssp             -------------
T ss_pred             HHHHHHhHHHHHH
Confidence            6555544444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0161|consensus

Probab=97.50  E-value=0.017  Score=58.56  Aligned_cols=141  Identities=26%  Similarity=0.362  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy6538           2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN   81 (153)
Q Consensus         2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~   81 (153)
                      ..+|+++.+.++.|-..+.....+-+-+..+++.|..++++..+.-.-..---++--+++..+++.+++....+=..+..
T Consensus      1300 ~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee 1379 (1930)
T KOG0161|consen 1300 ESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEE 1379 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999987777666666778899999999999999998888999


Q ss_pred             HHhhhhhHHHHHHHHHHHHhhhhhhHH-----------------------HhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy6538          82 LRKKHNDAVSEMGEQIDQLNKLKTNKE-----------------------EATTEKVLKQLKHQLNEVQSRLDEANRTIN  138 (153)
Q Consensus        82 lrkkh~~~v~el~eqie~lqr~k~klE-----------------------k~~~ek~~k~lE~ql~el~~k~ee~~r~~~  138 (153)
                      .+++.+..+.++.++++.+.-.-.++|                       -..++++.++++..+.+++.+.+++...+.
T Consensus      1380 ~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld 1459 (1930)
T KOG0161|consen 1380 LKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELD 1459 (1930)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998887776666665                       245677788888888888888877766555


Q ss_pred             HHHH
Q psy6538         139 DLDV  142 (153)
Q Consensus       139 el~~  142 (153)
                      ....
T Consensus      1460 ~aq~ 1463 (1930)
T KOG0161|consen 1460 AAQR 1463 (1930)
T ss_pred             HHHH
Confidence            4433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.05  E-value=0.56  Score=38.71  Aligned_cols=113  Identities=25%  Similarity=0.314  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH---
Q psy6538          32 ELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE---  108 (153)
Q Consensus        32 eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE---  108 (153)
                      +|..|+++|-.-.+.+-+-       |++-..|...+..........++.++..+...+.++..+|+.+..-+++++   
T Consensus         5 eL~~LNdRla~YIekVr~L-------E~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~   77 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFL-------EQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEI   77 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhh
Confidence            4555566653333333332       333333333333333333344445555555555555566665555555444   


Q ss_pred             ------------H-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         109 ------------E-ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       109 ------------k-~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                                  + -..-..+..++..+..+..-+++......++......|..|+
T Consensus        78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl  133 (312)
T PF00038_consen   78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL  133 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence                        1 122345667788888888888888888888888877777664

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR00606 rad50 rad50

Probab=95.04  E-value=3.2  Score=41.29  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538           9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (153)
Q Consensus         9 eeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~   43 (153)
                      ..++..++......-..+.++..+|++|...+...
T Consensus       866 i~el~~~klkl~~~l~~r~~le~~L~el~~el~~l  900 (1311)
T TIGR00606       866 TNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL  900 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555556666666666666666433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.30  E-value=2.3  Score=34.23  Aligned_cols=149  Identities=26%  Similarity=0.378  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhc---CccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG---GATSAQIELNKKREAEMSKLRRDLEEANIQHESTL   79 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~---~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~   79 (153)
                      .++..++..|......+.+++..-..|.+-+..|-+.|+-+.   ..+....+--.++-.+...-++.|+......+..+
T Consensus        15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri   94 (237)
T PF00261_consen   15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERI   94 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            356667777777777777777777777777776665554443   33344444444555555566666666666665555


Q ss_pred             HHHHhhhh--------------------------------------hHHHHHHHHHHHHhhhhhhHH---------Hhhh
Q psy6538          80 ANLRKKHN--------------------------------------DAVSEMGEQIDQLNKLKTNKE---------EATT  112 (153)
Q Consensus        80 ~~lrkkh~--------------------------------------~~v~el~eqie~lqr~k~klE---------k~~~  112 (153)
                      ..|-....                                      ..+.+|.+.|..+...-..++         .-.+
T Consensus        95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~  174 (237)
T PF00261_consen   95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEY  174 (237)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence            55444332                                      112222222222221111122         3567


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      +..++.|..+|.++..+++...+.+..|...+.+|..++
T Consensus       175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL  213 (237)
T PF00261_consen  175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL  213 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888999999999999999999998888888887765

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.18  E-value=2.7  Score=34.62  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=27.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         110 ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       110 ~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      ..+...+..++.++..++..+....+.+.+|-..+-.|..|+
T Consensus       258 ~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EI  299 (312)
T PF00038_consen  258 EEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEI  299 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            344555666666666666666666666677766666666654

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF15372 DUF4600: Domain of unknown function (DUF4600)

Probab=93.36  E-value=2.5  Score=31.47  Aligned_cols=92  Identities=23%  Similarity=0.403  Sum_probs=67.6

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHH
Q psy6538          48 SAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQ  127 (153)
Q Consensus        48 ~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~  127 (153)
                      -+|.|+|...|..+.-|+..++.+....-.-.+..|.--.-++..|..-|.+|.            +-.+.|+.|+.+..
T Consensus        11 EtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLE------------keK~~Le~qlk~~e   78 (129)
T PF15372_consen   11 ETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLE------------KEKRSLENQLKDYE   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence            478999999999999999999999988877777777655556666666666444            44455777777777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         128 SRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       128 ~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      -+++.-.+.+...+.-.....+|+
T Consensus        79 ~rLeQEsKAyhk~ndeRr~ylaEi  102 (129)
T PF15372_consen   79 WRLEQESKAYHKANDERRQYLAEI  102 (129)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Confidence            777777777766666666555554

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=93.30  E-value=7.9  Score=37.06  Aligned_cols=9  Identities=56%  Similarity=0.704  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q psy6538          29 LARELEELG   37 (153)
Q Consensus        29 l~~eLe~l~   37 (153)
                      +..+++.+.
T Consensus       334 l~~~~~~l~  342 (1164)
T TIGR02169       334 LLAEIEELE  342 (1164)
T ss_pred             HHHHHHHHH
Confidence            333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0971|consensus

Probab=93.10  E-value=9  Score=37.16  Aligned_cols=114  Identities=22%  Similarity=0.357  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCccHHHHHH--------hHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----------
Q psy6538          27 ADLARELEELGERLEEAGGATSAQIEL--------NKKREAEMSKLRRDLEEANIQHESTLANLRKKHN-----------   87 (153)
Q Consensus        27 ~dl~~eLe~l~~~Lee~~~~t~aq~el--------~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~-----------   87 (153)
                      .+|+-+|+-|+.++++.||..+++.-.        |.+.-.-+.+||--.......|-.+.-.|-+||+           
T Consensus       342 deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~  421 (1243)
T KOG0971|consen  342 DELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKER  421 (1243)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            468889999999999999877553322        2332333445554455555555555555555554           


Q ss_pred             ---------hHHHHHHHHHHHHhhhhhhHH-----HhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy6538          88 ---------DAVSEMGEQIDQLNKLKTNKE-----EATTEKVLKQLKHQLNEVQSRLDEANRTINDLD  141 (153)
Q Consensus        88 ---------~~v~el~eqie~lqr~k~klE-----k~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~  141 (153)
                               ..|.+|.+|||..=-+..-++     +.++|-+++.||..+.++.+ +++++.++.+.+
T Consensus       422 Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn  488 (1243)
T KOG0971|consen  422 LSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESN  488 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                     234444455544333333333     78888888888888877654 344444444433

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=92.87  E-value=0.15  Score=36.32  Aligned_cols=34  Identities=41%  Similarity=0.595  Sum_probs=30.3

Q ss_pred             HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538          10 EEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (153)
Q Consensus        10 eeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~   43 (153)
                      ++|..|+..|..++..+..+..||++|+..|++.
T Consensus         1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeE   34 (100)
T PF06428_consen    1 KELEEERERREEAEQEKEQIESELEELTASLFEE   34 (100)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999654

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>PRK11637 AmiB activator; Provisional

Probab=91.75  E-value=8.2  Score=33.56  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538           5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL   40 (153)
Q Consensus         5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L   40 (153)
                      |..++.++..-......++.+..++..+|..+...|
T Consensus        56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i   91 (428)
T PRK11637         56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL   91 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444444444444444444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=90.50  E-value=14  Score=34.02  Aligned_cols=54  Identities=15%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             HhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538          55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE  108 (153)
Q Consensus        55 ~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE  108 (153)
                      -....-+..|..+++....-....+..|+..+.....+....++.++.++.+..
T Consensus       404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k  457 (594)
T PF05667_consen  404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIK  457 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            335566777888888888888888888888888777777777777777666555

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.44  E-value=22  Score=36.22  Aligned_cols=39  Identities=10%  Similarity=0.106  Sum_probs=17.5

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy6538         111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLII  149 (153)
Q Consensus       111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~  149 (153)
                      ++.......+.++.++..++.+....+..+....+.+..
T Consensus       446 nF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~  484 (1486)
T PRK04863        446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK  484 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.00  E-value=15  Score=33.55  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      ..+.++.++...+.++.-+...+.++.+...+..+++
T Consensus       291 qLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL  327 (546)
T PF07888_consen  291 QLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL  327 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666666665553

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.97  E-value=8.2  Score=36.36  Aligned_cols=91  Identities=25%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             HhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhHH---------HhhhHHHHHHHHHHH
Q psy6538          53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKE---------EATTEKVLKQLKHQL  123 (153)
Q Consensus        53 l~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh~~~v~el~eqie~lqr~k~klE---------k~~~ek~~k~lE~ql  123 (153)
                      |.+|||+ ++.||-.|-.=...-|.++++||.|+-..=.-.++.+..|..--..|.         ++.+-.+|--+-.||
T Consensus       599 LSTKREQ-IaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQl  677 (717)
T PF09730_consen  599 LSTKREQ-IATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQL  677 (717)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567776 899999999999999999999999996544444555544432211121         778888888888888


Q ss_pred             HHHHhHHHHHHHHHHHHHHHH
Q psy6538         124 NEVQSRLDEANRTINDLDVAR  144 (153)
Q Consensus       124 ~el~~k~ee~~r~~~el~~~~  144 (153)
                      .+++.++.-.+...-.|++-+
T Consensus       678 demqrqL~aAEdEKKTLNsLL  698 (717)
T PF09730_consen  678 DEMQRQLAAAEDEKKTLNSLL  698 (717)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            888887766666555555443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=89.50  E-value=16  Score=33.15  Aligned_cols=42  Identities=33%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538           2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (153)
Q Consensus         2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~   43 (153)
                      ..+|..|-+.|+.|-.++..+++....+...|..+.......
T Consensus       288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l  329 (569)
T PRK04778        288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKEL  329 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999988888876544

>KOG1029|consensus

Probab=89.18  E-value=22  Score=34.20  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q psy6538         111 TTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIE  150 (153)
Q Consensus       111 ~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E  150 (153)
                      .-+-.|+.+.+++-++....+-.-..++.++.++..|...
T Consensus       539 ~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~  578 (1118)
T KOG1029|consen  539 KKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED  578 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3344577777777776665555555555566666655544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=88.77  E-value=16  Score=32.27  Aligned_cols=44  Identities=34%  Similarity=0.441  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy6538           2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG   45 (153)
Q Consensus         2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~   45 (153)
                      +..|..++..+..-+..+.+.+++..++..++..+..+|-++.+
T Consensus        44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~   87 (420)
T COG4942          44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD   87 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34577777777777788888888888888888888887755543

>KOG0977|consensus

Probab=88.52  E-value=19  Score=32.85  Aligned_cols=64  Identities=20%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q psy6538          23 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH   86 (153)
Q Consensus        23 Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrkkh   86 (153)
                      +-...+|-.+..-|...|..+......-.-++...+..+..|..+|.-....|+..|..++.++
T Consensus       168 e~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~  231 (546)
T KOG0977|consen  168 EDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKA  231 (546)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3333344444444444444443333333333444444555555555555555555555555554

>KOG0612|consensus

Probab=86.63  E-value=19  Score=35.94  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL   82 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~l   82 (153)
                      .++.++.--|..||.+|.+++--...+..+++-|+..+--+...-.-+-.....-..++.+|...|+......=.....|
T Consensus       700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eL  779 (1317)
T KOG0612|consen  700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQREL  779 (1317)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence            46788888999999999999999999999999999877555433222323333455677778888887775555555555


Q ss_pred             H
Q psy6538          83 R   83 (153)
Q Consensus        83 r   83 (153)
                      +
T Consensus       780 s  780 (1317)
T KOG0612|consen  780 K  780 (1317)
T ss_pred             h
Confidence            5

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=86.42  E-value=29  Score=32.61  Aligned_cols=104  Identities=27%  Similarity=0.339  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh--------cCccHHHHHHhHhHHHHHHHHHHHH---HHHHh
Q psy6538           5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA--------GGATSAQIELNKKREAEMSKLRRDL---EEANI   73 (153)
Q Consensus         5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~--------~~~t~aq~el~~krE~e~~~Lrr~L---ee~~~   73 (153)
                      |.-||.-|-.|+..|..+|++...-...--.-.+.--.+        ...+.+.-.=.+.-|.|+.+||++|   |+...
T Consensus       490 l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~  569 (697)
T PF09726_consen  490 LQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIR  569 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777777777777776554332211100000000        0111112122233678899999776   77888


Q ss_pred             hhHHHHHHHHhhh---hhHHHHHHHHHHHHhhhhhhHH
Q psy6538          74 QHESTLANLRKKH---NDAVSEMGEQIDQLNKLKTNKE  108 (153)
Q Consensus        74 ~~e~~~~~lrkkh---~~~v~el~eqie~lqr~k~klE  108 (153)
                      ..|.-+..||+-+   ..-++.|-..|-.+|.-...||
T Consensus       570 ~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE  607 (697)
T PF09726_consen  570 ELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLE  607 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888888742   3345667777777777677777

; GO: 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=85.09  E-value=23  Score=30.22  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHH---HHHHHHHHhhhHHH
Q psy6538           2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL---RRDLEEANIQHEST   78 (153)
Q Consensus         2 q~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~L---rr~Lee~~~~~e~~   78 (153)
                      +++|.+|-+-|.-++.....++..-..+...|+.+...-....+              -+...   ...++.....+...
T Consensus        59 ~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~--------------~~~~~~~~~~~~~~~~~~l~~~  124 (343)
T PRK09039         59 NSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA--------------LLAELAGAGAAAEGRAGELAQE  124 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhhhhcchHHHHHHHHHHH
Confidence            45677777777777665555555555555444433322211111              00000   01222222333344


Q ss_pred             HHHHHhhhh---hHHHHHHHHHHHHhhhhhhHH
Q psy6538          79 LANLRKKHN---DAVSEMGEQIDQLNKLKTNKE  108 (153)
Q Consensus        79 ~~~lrkkh~---~~v~el~eqie~lqr~k~klE  108 (153)
                      +...+...+   ..|.-|+.||+.|...-+.++
T Consensus       125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039        125 LDSEKQVSARALAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443   447788888888777766555

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=83.25  E-value=35  Score=30.79  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL   40 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~L   40 (153)
                      ..|..|.+.|+.-+.++..++..+..+..+.+.....|
T Consensus       179 ~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~  216 (522)
T PF05701_consen  179 KEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEW  216 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777778888777777777776666554444444443

Several sequences in this family are described as being myosin heavy chain-like.

>PRK11637 AmiB activator; Provisional

Probab=83.16  E-value=30  Score=30.06  Aligned_cols=42  Identities=19%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG   44 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~   44 (153)
                      .++..++.++..-........+...++..++..+..+|....
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~   88 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQAS   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555444445555555555555555555555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.59  E-value=45  Score=31.59  Aligned_cols=99  Identities=28%  Similarity=0.311  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHH---HHH--------H
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRD---LEE--------A   71 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~---Lee--------~   71 (153)
                      +.|.-|+.+|.       .+|+.+..|..-|.+...+|+-+.|+.+.|.+-....-+.+..|++.   .+.        .
T Consensus       265 ~EiqKL~qQL~-------qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~  337 (717)
T PF09730_consen  265 SEIQKLKQQLL-------QVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKE  337 (717)
T ss_pred             HHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence            34566666664       57888899999999999999999999999888877777778877772   111        0


Q ss_pred             H------hhhHHH---HHHHHhhhhhHHHHHHHHHHHHhhhhhhHH
Q psy6538          72 N------IQHEST---LANLRKKHNDAVSEMGEQIDQLNKLKTNKE  108 (153)
Q Consensus        72 ~------~~~e~~---~~~lrkkh~~~v~el~eqie~lqr~k~klE  108 (153)
                      .      ..++..   +.-|..|+..++.++..=-..|+..+.++.
T Consensus       338 ~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~  383 (717)
T PF09730_consen  338 RDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYN  383 (717)
T ss_pred             cccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0      112222   234557776666665555555555544443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=82.49  E-value=54  Score=32.44  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6538         116 LKQLKHQLNEVQSRLDEANRTINDLDVARKKLI  148 (153)
Q Consensus       116 ~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~  148 (153)
                      ...+++.+..+.....++...+..+...+..+.
T Consensus       872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~  904 (1163)
T COG1196         872 KEELEDELKELEEEKEELEEELRELESELAELK  904 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=82.37  E-value=17  Score=26.58  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=14.9

Q ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy6538         112 TEKVLKQLKHQLNEVQSRLDEANRTINDLDV  142 (153)
Q Consensus       112 ~ek~~k~lE~ql~el~~k~ee~~r~~~el~~  142 (153)
                      .+-....++..+.++..+++|+..+=.-|..
T Consensus        96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~  126 (132)
T PF07926_consen   96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHD  126 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555555444333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0612|consensus

Probab=81.22  E-value=63  Score=32.44  Aligned_cols=67  Identities=25%  Similarity=0.358  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHH
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA   80 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~   80 (153)
                      ..+.+.++-+..+++.+.+++..-+++.++|+.+....+-+.+.           ...+..++++|+......-+.++
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~-----------~~kv~~~rk~le~~~~d~~~e~~  560 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS-----------LEKVNSLRKQLEEAELDMRAESE  560 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHhhhhhhhhHH
Confidence            44556666677777766666666666666666664444333222           23466677777766666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.4 bits (162), Expect = 9e-14
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +++ I +L+E++E E+ +R KAEKQ+ DL+ ELE L   LE+    T+ Q EL      +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

Query: 61   MS 62
              
Sbjct: 1181 DD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.6 bits (147), Expect = 9e-12
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
             ++ I ELE  ++ E +SR + EK +  L  E  +L E++ E     +       K+E E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
            +      LE+      S   N  KK  +  S + +  + L   K  + +A  EK  + L 
Sbjct: 1097 LQAALARLED----ETSQKNNALKKIRELESHISDLQEDLESEKAARNKA--EKQKRDLS 1150

Query: 121  HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
             +L  +++ L++   T       R     +  +
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 6/147 (4%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q ++    E      + R +   ++ +L   L E+  R+EE    +       KK + +
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
            M  L   LEE     E+    L+ +   A  ++ +  D +  ++    + T E+  K L+
Sbjct: 957  MLDLEEQLEEE----EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER--KLLE 1010

Query: 121  HQLNEVQSRLDEANRTINDLDVARKKL 147
             +++++ + L E      +L   + K 
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.2 bits (133), Expect = 8e-10
 Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 6/153 (3%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            MQ ++ +LEE++E E  +R K + ++     +++++ + +       +   +  K  E  
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 61   MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLK 120
            +S L  +L E   +    L  L+ KH   +SE+  ++ +  K +        EK+ ++L+
Sbjct: 1013 VSDLTTNLAEEE-EKAKNLTKLKNKHESMISELEVRLKKEEKSR-----QELEKIKRKLE 1066

Query: 121  HQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
             + +++  ++ E    I +L     K   E   
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.5 bits (126), Expect = 6e-09
 Identities = 26/156 (16%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            ++  ++E+E  +E E +   + + ++  + +++ +L E+LEE   A           + +
Sbjct: 925  LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984

Query: 61   MSKLRRDL---EEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLK 117
            + K+  D+   E+ N +       L ++ +D  + + E+ ++   L   K +   E ++ 
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL--TKLKNKHESMIS 1042

Query: 118  QLKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            +L+ +L + +    E  +    L+     L  +  E
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
              +I ++E+++ +      K  K+R  L   + +L   L E         +L  K E+ +
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041

Query: 62   S----------KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEAT 111
            S          K R++LE+   + E   ++L ++  +  +++ E   QL K +   + A 
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

Query: 112  TE-----KVLKQLKHQLNEVQSRLDEANRTINDLDVARKKL 147
                           ++ E++S + +    +     AR K 
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
            +Q +I E  +E +   +     E   +    +L    ERL  +              + E
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 61   MSKLR----------RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEA 110
            ++KLR          + +EE   +++     L  +  +  + +  + ++LN+   ++ + 
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052

Query: 111  TTEKVLKQLKHQLNEVQSRLDEANR 135
             TE + K+L  +  +++  L++   
Sbjct: 1053 ITETMEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 7    ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
                 VE  ++     E +   L R+++E  +  +           L      E  KLR 
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS---LLEKMNNLEITYSTETEKLRS 967

Query: 67   DLEEANIQHE--STLANLRKKHNDAVSEMGEQIDQLNKLK------TNKEEATTEKVLKQ 118
            D+E   +  E      N      + ++++ +++ Q    K       +K +  TE+++ +
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 119  LKHQLNEVQSRLDEANRTINDLDVARKKLIIETTE 153
            LK Q   +++  +E NR I+D      + + +   
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 17/149 (11%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
            Q  +      V   R  +A    Q        +   ++L+    +     +L+   E ++
Sbjct: 871  QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930

Query: 62   SKLRR---DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQ 118
             +L+R   +  +        + NL   ++    ++   +++L   +  +E       +  
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE--EEAKNATNRVLS 988

Query: 119  LKHQLNEVQSRLDEANRTINDLDVARKKL 147
            L+ ++ +++  L +       ++    K 
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKY 1017

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 2    QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
            +     LE ++   ++   +  K+   L  ++  L            + +E  +  E E 
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE- 978

Query: 62   SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTNKEE--ATTEKVLKQL 119
                ++     +  +  +A LRK+ +   +E     +  +K K   E+  +  ++    L
Sbjct: 979  ---AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Query: 120  KHQLNEVQSRLDEANRTINDLDVARKK 146
            K +  E+  R+ +  + I +    +  
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLV 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 1    MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE----EAGGATSAQIELNKK 56
            ++A +Y       +  +   K  K  A      ++L   LE    +       Q +  K 
Sbjct: 887  LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 57   REAEMSKLRRDLEEANIQHESTLANLRKKHNDA------VSEMGEQIDQLNKL--KTNKE 108
               +M+ L         +  S +  LR    +A      V  + E+I +L K   +T  E
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 109  EATTEKVLKQLKHQLNEVQSRLDEANR 135
            + T E+   + KH+  ++ S L E N 
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNT 1033

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 26/166 (15%)

Query: 2   QARIYE--LEEEVEVERQ---SRAKAE-KQRADLARELEELGERLEEAGGATSAQI--EL 53
           Q  + +  +EE + +  +   S  K E +Q + + R   E  +RL         Q+  + 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKY 129

Query: 54  NKKREAEMSKLRRDLEEAN-----IQH------ESTLANLRKKHNDAVSEMGEQIDQLNK 102
           N  R     KLR+ L E       +        ++ +A           +M  +I  LN 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 103 LKTNKEEATTEKVLKQLKHQLN-EVQSRLDEANRTINDLDVARKKL 147
              N  E   E  L++L +Q++    SR D ++     +   + +L
Sbjct: 190 KNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 38/156 (24%)

Query: 5   IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
           I      V  +    +  EKQ  +    +  +              +EL  K E E +  
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------------YLELKVKLENEYALH 446

Query: 65  RRDLEEANIQHESTLANLRKKHND-----------AVSEMGEQIDQLNKLKTNKEEATTE 113
           R  ++  NI       +L   + D              E  E++     +  +       
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD------F 500

Query: 114 KVLKQ-LKHQ---LNEVQSRLDEANRTINDLDVARK 145
           + L+Q ++H     N   S L+    T+  L   + 
Sbjct: 501 RFLEQKIRHDSTAWNASGSILN----TLQQLKFYKP 532

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 23/156 (14%), Positives = 56/156 (35%), Gaps = 36/156 (23%)

Query: 20   AKAEKQRADLARELEELGERLEEAGGATSAQIE--LNKKREAEMSKL------------- 64
               E Q  DL   L +    L+      + +++  +  ++ AE+ +              
Sbjct: 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRN 1989

Query: 65   ----------RRDLEEANIQH---------ESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105
                        DLE+A             E+    L+ K ++ V+ +      +   K 
Sbjct: 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049

Query: 106  NKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLD 141
                   E   +Q+K + ++V++++D +   +++L+
Sbjct: 2050 EYATLIRET--EQIKTESSKVKNKVDRSIALLDNLN 2083

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 8/88 (9%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 1   MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
               I  ++ +++       + +        +L  +  +L E     +   EL ++++  
Sbjct: 906 TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL--NYNGVPELTERKDTF 963

Query: 61  MSKLRRDLEEANIQHESTLANLRKKHND 88
            ++    ++ +   +++TL    ++   
Sbjct: 964 FAQQWTGVKSSAETYKNTLLAELERLQK 991

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.91
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	96.01
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.92
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.58
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	95.38
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.01
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.99
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	92.65
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.22
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.26
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.0
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	89.65
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	88.84
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.02
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	85.78
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	84.79
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	81.11
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.9

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.91  E-value=0.018  Score=42.95  Aligned_cols=91  Identities=26%  Similarity=0.366  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy6538           4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR   83 (153)
Q Consensus         4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lr   83 (153)
                      .+..|.+.|..|+..|..+|..+..+..||++|+..|++-.                                       
T Consensus        59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA---------------------------------------   99 (154)
T 2ocy_A           59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA---------------------------------------   99 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence            34556666667777777777777777777777776664331                                       


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy6538          84 KKHNDAVSEMGEQIDQLNKLKTNKEEATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLI  148 (153)
Q Consensus        84 kkh~~~v~el~eqie~lqr~k~klEk~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~  148 (153)
                                +.=+-..     +.+...++++...|+.++.+....++-++.++.+|..-...+.
T Consensus       100 ----------N~MVa~a-----r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~  149 (154)
T 2ocy_A          100 ----------NNMVADA-----RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD  149 (154)
T ss_dssp             ----------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             ----------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      1111111     1123366677777888888888888877777777765544443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.92  E-value=0.21  Score=34.42  Aligned_cols=41  Identities=29%  Similarity=0.470  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy6538           3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA   43 (153)
Q Consensus         3 ~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~   43 (153)
                      ..+..|..+|..|+..|..+|..+..+..||++|+..|.+-
T Consensus        26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE   66 (97)
T 2eqb_B           26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE   66 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667888888899999999999999999999998888654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.58  E-value=0.0021  Score=61.06  Aligned_cols=61  Identities=38%  Similarity=0.527  Sum_probs=0.0

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHH
Q psy6538           1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM   61 (153)
Q Consensus         1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~   61 (153)
                      ++.+|.+|.++|+.++..+.+.+.++.+|..+++.|..+|++.++.+.+|++++++|+++-
T Consensus      1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn~aq~el~~~~e~~~ 1181 (1184)
T 1i84_S         1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181 (1184)
T ss_dssp             -------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence            3567888999999999999999999999999999999999999999999999999999863

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.38  E-value=0.04  Score=40.26  Aligned_cols=39  Identities=31%  Similarity=0.497  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy6538           4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE   42 (153)
Q Consensus         4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee   42 (153)
                      .+..|...|..|+..|..+|..+..+..||++|+..|++
T Consensus        47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe   85 (135)
T 2e7s_A           47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD   85 (135)
T ss_dssp             HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777777777777777777777644

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.11  E-value=1.4  Score=33.18  Aligned_cols=72  Identities=13%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHH
Q psy6538           1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN   72 (153)
Q Consensus         1 lq~~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~   72 (153)
                      |+-++.|+++-|-+|-.+-.|.-|+-.+++.-+..+-.-+-|..+....-..-+-..+.++..|+-.|+...
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr   82 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER   82 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999888877777777666666666667778899999999998877

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.01  E-value=3.9  Score=38.71  Aligned_cols=17  Identities=35%  Similarity=0.464  Sum_probs=7.9

Q ss_pred             hHHHHHHHHHHHHHHHH
Q psy6538          56 KREAEMSKLRRDLEEAN   72 (153)
Q Consensus        56 krE~e~~~Lrr~Lee~~   72 (153)
                      +-+.++..|+.++++..
T Consensus       957 ~~~~e~~~L~~~l~~le  973 (1080)
T 2dfs_A          957 TYSTETEKLRSDVERLR  973 (1080)
T ss_dssp             HHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34445555554444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.99  E-value=0.032  Score=53.03  Aligned_cols=14  Identities=21%  Similarity=0.318  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHh
Q psy6538           4 RIYELEEEVEVERQ   17 (153)
Q Consensus         4 ~i~eLeeeLe~Er~   17 (153)
                      ++..+...+..++.
T Consensus       893 e~~~l~~~L~~e~~  906 (1184)
T 1i84_S          893 EKNLLQEKLQAETE  906 (1184)
T ss_dssp             HHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=92.65  E-value=1.5  Score=29.23  Aligned_cols=83  Identities=27%  Similarity=0.473  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHhHhHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q psy6538           5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK   84 (153)
Q Consensus         5 i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Lee~~~~t~aq~el~~krE~e~~~Lrr~Lee~~~~~e~~~~~lrk   84 (153)
                      |.+|...++.=-.-+++++-++.-+...+++++..+++-       +.++..-|++|..||++++++++..    ..|  
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E-------~~~R~~~E~d~~~LrkdvD~a~l~r----~dL--   68 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-------MLQREEAENTLQSFRQDVDNASLAR----LDL--   68 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTTHHHHHHHH----HHH--
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHH----HHH--
Confidence            677888888777777888888888888888888888764       4555667889999999999988543    122  


Q ss_pred             hhhhHHHHHHHHHHHHhh
Q psy6538          85 KHNDAVSEMGEQIDQLNK  102 (153)
Q Consensus        85 kh~~~v~el~eqie~lqr  102 (153)
                        ...|..|.++|..|++
T Consensus        69 --E~kvesL~eEl~fLkk   84 (86)
T 3swk_A           69 --ERKVESLQEEIAFLKK   84 (86)
T ss_dssp             --HHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHHHhh
Confidence              2346677777777665

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.22  E-value=2.2  Score=30.24  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy6538         115 VLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIETT  152 (153)
Q Consensus       115 ~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~~  152 (153)
                      ..-.++..+.++..++++......++...+.++..+++
T Consensus        77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~  114 (129)
T 2fxo_A           77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECS  114 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457777888888888888888888888888776653

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.00  E-value=6.1  Score=37.36  Aligned_cols=13  Identities=15%  Similarity=0.534  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHH
Q psy6538           2 QARIYELEEEVEV   14 (153)
Q Consensus         2 q~~i~eLeeeLe~   14 (153)
                      +..|.+|+..|+.
T Consensus       927 E~kl~eLq~rL~~  939 (1080)
T 2dfs_A          927 ENKIMQLQRKIDE  939 (1080)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            3455556555544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=89.65  E-value=6.1  Score=30.83  Aligned_cols=23  Identities=4%  Similarity=0.073  Sum_probs=13.8

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHH
Q psy6538          86 HNDAVSEMGEQIDQLNKLKTNKE  108 (153)
Q Consensus        86 h~~~v~el~eqie~lqr~k~klE  108 (153)
                      .+.....|+-+|+.+.+-...++
T Consensus        88 ~~kE~~aL~kEie~~~~~i~~lE  110 (256)
T 3na7_A           88 SERELRSLNIEEDIAKERSNQAN  110 (256)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666555555

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=88.84  E-value=5.7  Score=29.34  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q psy6538           6 YELEEEVEVERQSRAKAEKQRADLARELEELGE   38 (153)
Q Consensus         6 ~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~   38 (153)
                      .+|...+..-.......+.....+...+..+..
T Consensus        23 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   55 (284)
T 1c1g_A           23 DEAEADKKAAEDRSKQLEDELVSLQKKLKATED   55 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.02  E-value=6.3  Score=27.81  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Q psy6538           4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE   41 (153)
Q Consensus         4 ~i~eLeeeLe~Er~~R~k~Ek~r~dl~~eLe~l~~~Le   41 (153)
                      .|..|.+.|..+-..|...+.....|..+..+|..+|.
T Consensus        21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~   58 (129)
T 2fxo_A           21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ   58 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677776667777777777777777777666664

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=85.78  E-value=8.8  Score=28.30  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=30.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         110 ATTEKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       110 ~~~ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      -.++...+.|...|.++..+++...|.+..|...+.+|..++
T Consensus        73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L  114 (155)
T 2efr_A           73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL  114 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777777777777777777777777777777766543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=84.79  E-value=9.8  Score=27.98  Aligned_cols=28  Identities=7%  Similarity=0.235  Sum_probs=10.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6538         119 LKHQLNEVQSRLDEANRTINDLDVARKK  146 (153)
Q Consensus       119 lE~ql~el~~k~ee~~r~~~el~~~~~r  146 (153)
                      ++..+..+...+......+..+.....+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (284)
T 1c1g_A          242 AERSVTKLEKSIDDLEDELYAQKLKYKA  269 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.11  E-value=12  Score=26.26  Aligned_cols=39  Identities=18%  Similarity=0.254  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      ....-.+|.+|..++..+.-.-+...+|-..|..|..|+
T Consensus        81 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI  119 (129)
T 3tnu_B           81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777788887777777777788888888877765

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.90  E-value=12  Score=26.29  Aligned_cols=39  Identities=15%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6538         113 EKVLKQLKHQLNEVQSRLDEANRTINDLDVARKKLIIET  151 (153)
Q Consensus       113 ek~~k~lE~ql~el~~k~ee~~r~~~el~~~~~rl~~E~  151 (153)
                      ....-.+|.+|..++..+.-.-+...+|-..|..|..|+
T Consensus        83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI  121 (131)
T 3tnu_A           83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI  121 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455777777777777777777778888887777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00