Psyllid ID: psy6561


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MSITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKLWIGAFWKIRTSNNKYLKSTIPAITKGASKRRSNKISVSNFHNATSTIKEAKKILIDGTKHSNSSTATANSRSGNKFAPLTSR
ccEEEEEEEEEEcccEEEEEEccEEEEccccccEEEEEEccccccccccEEEEEEEEccccccccccccccEEEEEEccccccEEEEEcccccccccccEEEEEEEcccccEEEcccccEEccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccEEcccccccHHHHHHHHHHHccEEccccccccccccccccccccccc
ccccEEEEEEEccccEEEEEEEcEEccccccccEEEEEEccccccccccEEEEEEEEcccccccccccccEEEEEEEEcccccEEEEEcccccccHHHHHEEEEEHHccccHHHHHHHccccccccccccccccccccEEEcccEEEEEEcccccccccccccccccccccccccEEEcccccccccHHHHccEEEEcEEcccccccEEcccccccccccccc
MSITYVLSKAAWNhqyefnvharsifpcfahggitvlfqypkcilpisdkirlfgkvpadvssprspssqiyitekkvirgqHSLQFGCDLFNEHYVEYCFVYVsqdstgavsdvksdcvptypvsgqgpsqmassNGLKLWIGAFWKIRTsnnkylkstipaitkgaskrrsnkisvsnfhnaTSTIKEAKKILIdgtkhsnsstatansrsgnkfapltsr
MSITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKvpadvssprspssqiyitekkviRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVsgqgpsqmassNGLKLWIGAFWKIRtsnnkylkstipaitkgaskrrsnkisvsnfhnatstikEAKKILIDGTkhsnsstatansrsgnkfapltsr
MSITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKLWIGAFWKIRTSNNKYLKSTIPAITKGASKRRSNKISVSNFHNATSTIKEAKKILIDGTKHsnsstatansRSGNKFAPLTSR
**ITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVP************IYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTY**************GLKLWIGAFWKIRTSNNKYLKSTIPAI***********************************************************
*****VLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVPA***********IYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVSGQ**S****SNGLKLWIGAFWKIRTSNNKYLKSTIP*******************************************************APL***
MSITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKV***********SQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPV**********SNGLKLWIGAFWKIRTSNNKYLKSTIPAITK********KISVSNFHNATSTIKEAKKILIDGT************************
*SITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKLWIGAFWKIRTSNNKYLKSTIPAITKGASKRRSNKISVSNFHNATSTIKEAKKILIDGTKHS*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSITYVLSKAAWNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVPADVSSPRSPSSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVSGQGPSQMASSNGLKLWIGAFWKIRTSNNKYLKSTIPAITKGASKRRSNKISVSNFHNATSTIKEAKKILIDGTKHSNSSTATANSRSGNKFAPLTSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
170054887 517 conserved hypothetical protein [Culex qu 0.547 0.235 0.617 1e-38
91093515 1099 PREDICTED: similar to golden goal CG3222 0.547 0.111 0.590 3e-38
270002682 460 hypothetical protein TcasGA2_TC005236 [T 0.529 0.256 0.618 7e-38
195019623 1306 GH14733 [Drosophila grimshawi] gi|193898 0.515 0.088 0.591 2e-37
157130520 403 hypothetical protein AaeL_AAEL011783 [Ae 0.556 0.307 0.607 3e-37
195378719 1291 GJ11514 [Drosophila virilis] gi|19415528 0.515 0.089 0.582 7e-37
194748449 1281 GF24476 [Drosophila ananassae] gi|190623 0.569 0.099 0.560 8e-37
195427645 1271 GK17240 [Drosophila willistoni] gi|19415 0.515 0.090 0.591 1e-36
242014639 1005 hypothetical protein Phum_PHUM358480 [Pe 0.542 0.120 0.593 2e-36
195160351 1178 GL25044 [Drosophila persimilis] gi|19411 0.533 0.101 0.564 2e-36
>gi|170054887|ref|XP_001863334.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167875021|gb|EDS38404.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/128 (61%), Positives = 97/128 (75%), Gaps = 6/128 (4%)

Query: 9   KAAWNHQYEFNVHARSIFPCFAHG-GITVLFQYPKCILPISDKIRLFGKVPADVSSPRSP 67
           KA W+ QY F VHARSIFPC  HG GI +LFQYP CIL  SD++R++GK+ ADV+S   P
Sbjct: 338 KADWSKQYIFTVHARSIFPCDVHGDGIRLLFQYPSCILDQSDRVRVYGKLRADVTSLAPP 397

Query: 68  SSQIYITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVS- 126
           +S  YI E++V++GQHSL FGCDLF E Y+EYCFVYVSQ  +GAV+D++ DCVPT PVS 
Sbjct: 398 TSLHYIAEQRVMKGQHSLYFGCDLFYEKYIEYCFVYVSQAISGAVADIRMDCVPTLPVSP 457

Query: 127 ----GQGP 130
               G GP
Sbjct: 458 SDSGGWGP 465




Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093515|ref|XP_969668.1| PREDICTED: similar to golden goal CG32227-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270002682|gb|EEZ99129.1| hypothetical protein TcasGA2_TC005236 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195019623|ref|XP_001985022.1| GH14733 [Drosophila grimshawi] gi|193898504|gb|EDV97370.1| GH14733 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|157130520|ref|XP_001661910.1| hypothetical protein AaeL_AAEL011783 [Aedes aegypti] gi|108871894|gb|EAT36119.1| AAEL011783-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195378719|ref|XP_002048129.1| GJ11514 [Drosophila virilis] gi|194155287|gb|EDW70471.1| GJ11514 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194748449|ref|XP_001956658.1| GF24476 [Drosophila ananassae] gi|190623940|gb|EDV39464.1| GF24476 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195427645|ref|XP_002061887.1| GK17240 [Drosophila willistoni] gi|194157972|gb|EDW72873.1| GK17240 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|242014639|ref|XP_002427994.1| hypothetical protein Phum_PHUM358480 [Pediculus humanus corporis] gi|212512493|gb|EEB15256.1| hypothetical protein Phum_PHUM358480 [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195160351|ref|XP_002021039.1| GL25044 [Drosophila persimilis] gi|194118152|gb|EDW40195.1| GL25044 [Drosophila persimilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
FB|FBgn0052227 1272 gogo "golden goal" [Drosophila 0.515 0.090 0.565 1.1e-32
FB|FBgn0052227 gogo "golden goal" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 370 (135.3 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 65/115 (56%), Positives = 90/115 (78%)

Query:    12 WNHQYEFNVHARSIFPCFAHGGITVLFQYPKCILPISDKIRLFGKVPADVSSPRSPSSQI 71
             W+ ++ FNV+ARSIFPC  H GI VL++YP CIL   D++RL+ ++ ADV+S + P+S  
Sbjct:   338 WSDEFVFNVYARSIFPCDPHTGIGVLYEYPGCILEQGDRVRLYARLRADVASLKPPTSLH 397

Query:    72 YITEKKVIRGQHSLQFGCDLFNEHYVEYCFVYVSQDSTGAVSDVKSDCVPTYPVS 126
             Y++E++V++ QHSL F C+ F+E YVEYCFVYVSQ  +GAV+DV+ DCVPT PVS
Sbjct:   398 YVSEQRVVKSQHSLYFACEHFSEKYVEYCFVYVSQAISGAVADVRMDCVPTLPVS 452


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       213   0.00084  112 3  11 22  0.37    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.07u 0.12s 18.19t   Elapsed:  00:00:01
  Total cpu time:  18.07u 0.12s 18.19t   Elapsed:  00:00:01
  Start:  Thu Aug 15 11:24:54 2013   End:  Thu Aug 15 11:24:55 2013


GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP
GO:0030426 "growth cone" evidence=IDA
GO:0030424 "axon" evidence=IDA
GO:0016021 "integral to membrane" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0004872 "receptor activity" evidence=IMP
GO:0007411 "axon guidance" evidence=IMP
GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00